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Diagnostic Study of Head and Neck Metastatic Tumors From Different Primary Sites Based on Stacking Machine Learning Methods 基于堆叠机器学习方法的头颈部不同原发部位转移性肿瘤诊断研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-24 DOI: 10.1002/jbio.202500044
Yifei Liu, Cong Wu, Junpeng Ma, Liang Ma, Chongxuan Tian, Yunze Li, Jinlin Deng, Qize Lv, Wei Li, Miaoqing Zhao

Metastatic tumors of the head and neck (MTHN) typically indicate advanced disease with a poor prognosis, originating from cells that spread from other body parts. Diagnosis generally relies on slow and error-prone methods like imaging and histopathology. Addressing the need for a faster, more accurate diagnostic method, this study uses hyperspectral imaging to gather detailed cellular data from 208 patients at six primary MTHN sites. Techniques select characteristic spectral bands, and models including SVM, LightGBM, and ResNet are developed. A high-performance classification model, MTHN-SC, employs stacking technology with SVM and LightGBM as base learners and Random Forest as the meta-learner, achieving a diagnostic accuracy of 82.47%, outperforming other models. This research enhances targeted treatment strategies and advances the application of hyperspectral technology in identifying MTHN primary sites.

头颈部转移性肿瘤(MTHN)通常表明疾病进展,预后差,起源于身体其他部位扩散的细胞。诊断通常依赖于缓慢且容易出错的方法,如成像和组织病理学。为了满足对更快、更准确诊断方法的需求,本研究使用高光谱成像技术收集了来自6个原发性MTHN部位的208名患者的详细细胞数据。利用技术选择特征波段,开发了SVM、LightGBM、ResNet等模型。高性能分类模型MTHN-SC采用堆叠技术,SVM和LightGBM作为基础学习器,Random Forest作为元学习器,诊断准确率达到82.47%,优于其他模型。本研究增强了靶向治疗策略,推进了高光谱技术在MTHN原发部位识别中的应用。
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引用次数: 0
Hyperspectral Imaging for Benign and Malignant Diagnosis of Breast Tumors 高光谱成像在乳腺肿瘤良恶性诊断中的应用。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-24 DOI: 10.1002/jbio.202500188
Yihui He, Yihan Zhao, Jia Xu, Dongsheng Zhou, Weichen Shi, Yulong Wang, Yunchao Wang, Xulei Wang, Mengqiu Zhang, Ning Kang, Jianning Wang

Objective

To assess the feasibility of combining microscopic hyperspectral imaging (370–1100 nm) with a lightweight 1D-CNN for rapid, label-free discrimination of benign and malignant breast tumors.

Methods

Breast specimens (43 malignant, 39 benign) were imaged; 2 050 000 pixel spectra were preprocessed (dark-current subtraction, white-reference calibration, Savitzky–Golay smoothing, z-score normalization) and input to a custom 1D-CNN. Performance was benchmarked against SVM, AlexNet, and LSTM using accuracy, sensitivity, specificity.

Results

The 1D-CNN achieved 90.43% accuracy, 89.10% sensitivity, 91.34% specificity, exceeding baseline models.

Conclusions

Combining HSI with 1D CNN enables rapid and highly accurate classification of breast tumors, providing a new approach to rapid pathological diagnosis.

目的:探讨显微高光谱成像(370 ~ 1100nm)与轻型1D-CNN相结合快速、无标记区分乳腺良恶性肿瘤的可行性。方法:对乳腺标本(恶性43例,良性39例)进行影像学检查;对205万像素光谱进行预处理(暗电流减去、白基准校准、Savitzky-Golay平滑、z-score归一化),并输入到自定义1D-CNN中。使用准确性,灵敏度,特异性对SVM, AlexNet和LSTM进行性能基准测试。结果:1D-CNN准确率为90.43%,灵敏度为89.10%,特异性为91.34%,优于基线模型。结论:HSI联合1D CNN对乳腺肿瘤进行快速、高精度的分类,为快速病理诊断提供了新途径。
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引用次数: 0
Comprehensive Investigation of the Eye-Cornea Structure Based on the Extended Techniques of Polarization-Sensitive Optical Coherence Tomography 基于偏振敏感光学相干层析成像扩展技术的人眼角膜结构综合研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-24 DOI: 10.1002/jbio.202500101
O. V. Angelsky, A. Y. Bekshaev, C. Yu. Zenkova, D. I. Ivanskyi, J. Zheng, Xinzheng Zhang, Yu. Ursuliak

We present a universal technique for noninvasive investigation of thin multilayer optically transparent tissues based on polarization-sensitive optical coherence tomography. To reach higher diagnostic accuracy, we revisit the model of the cornea structure and reconsider the physical features of the interaction of light with the tissue structural elements. In the scheme proposed, the probing beam is algorithmically adjustable such that the x-polarized radiation impinges each consecutive structural layer; the object beam is formed by the reflection and back-scattering. Its characteristics are found analytically and numerically within the framework of the polarized Monte-Carlo model and the Jones matrix formalism. A modified Mach–Zehnder interferometer with orthogonal polarization channels enables the elimination of the object-signal depolarization caused by stochastic scattering and facilitates evaluation of the refractive indices and birefringence of tissue elements. The technique permits spatial scanning of the object, providing a complete 3D mapping with a submicrometer resolution in the longitudinal and transverse directions.

我们提出了一种基于偏振敏感光学相干层析成像的薄多层光学透明组织无创研究的通用技术。为了达到更高的诊断准确性,我们重新审视了角膜结构模型,并重新考虑了光与组织结构元素相互作用的物理特征。在提出的方案中,探测光束通过算法可调,使得x偏振辐射撞击每个连续的结构层;目标光束是由反射和后向散射形成的。在极化蒙特卡罗模型和琼斯矩阵形式主义的框架内,用解析和数值方法发现了它的特征。采用正交偏振通道的Mach-Zehnder干涉仪,消除了随机散射引起的目标信号去极化,便于组织元件折射率和双折射的测量。该技术允许对物体进行空间扫描,在纵向和横向上提供具有亚微米分辨率的完整3D映射。
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引用次数: 0
Depth-Resolved Attenuation Coefficient Quantification During Murine Embryonic Brain Development 小鼠胚胎脑发育过程中深度分辨衰减系数的量化。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-23 DOI: 10.1002/jbio.202500212
Md Mobarak Karim, Achuth Nair, Manmohan Singh, Maryam Hatami, Salavat R. Aglyamov, Kirill V. Larin

Brain development is a highly regulated process with significant morphological and functional transformations during early embryogenesis. Here, we quantified the optical attenuation coefficient (OAC) during murine embryonic brain development with a focus on crucial areas, including the forebrain, midbrain, and hindbrain from embryonic day (E)9.5 to E13.5. At earlier developmental stages, the estimation of OAC in these regions is comparatively low due to the low cell density and more straightforward pattern of extracellular matrix (ECM) composition, which results in minimal scattering and signal attenuation. However, as the embryo grows (by E13.5), increased ECM density and vascularization, along with the formation of blood vessels, contribute to enhanced signal attenuation, thereby reducing light penetration. As a result of gradual changes in cellular composition, tissue architecture, and extracellular matrix density, the study's findings demonstrate an increasing trend in OAC across the midbrain, hindbrain, and forebrain during embryonic development from E9.5 to E13.5.

大脑发育是一个高度调控的过程,在早期胚胎发生时具有显著的形态和功能转变。在这里,我们量化了小鼠胚胎大脑发育过程中的光学衰减系数(OAC),重点关注了胚胎日(E)9.5至E13.5期间的关键区域,包括前脑、中脑和后脑。在早期发育阶段,这些区域的OAC估计相对较低,因为细胞密度低,细胞外基质(ECM)组成模式更直接,导致最小的散射和信号衰减。然而,随着胚胎的生长(E13.5), ECM密度和血管化的增加,以及血管的形成,有助于增强信号衰减,从而减少光的穿透。由于细胞组成、组织结构和细胞外基质密度的逐渐变化,研究结果表明,在胚胎发育期间,从E9.5到E13.5,中脑、后脑和前脑的OAC呈增加趋势。
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引用次数: 0
Identification of Migraine Subtypes Using Functional Near-Infrared Spectroscopy Data: A Domain-Based Feature Extraction 使用功能近红外光谱数据识别偏头痛亚型:基于域的特征提取。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-23 DOI: 10.1002/jbio.202500120
Begum Kara Gulay, Nilufer Zengin, Fatih Emre Ozturk, Vesile Ozturk, Cagdas Guducu, Neslihan Demirel

Migraine diagnosis relies on subjective patient reports and International Headache Society guidelines, leading to misdiagnoses. In clinical practice, objective, reliable diagnostic tools are needed. To address this, the study proposes a framework utilizing functional near-infrared spectroscopy (fNIRS) to distinguish healthy individuals, interictal migraine patients with and without aura. The approach focuses on prefrontal cortex (PFC) activity, extracting features from oxyhemoglobin, deoxyhemoglobin, and total hemoglobin in time, frequency, and time-frequency domains. XGBoost applied to time-frequency features of oxyhemoglobin in the left PFC demonstrated outstanding performance, achieving 92% balanced accuracy, 89% sensitivity, 95% specificity, and 89% F1 score. Non-invasive fNIRS with Machine Learning offers a promising, cost-effective alternative to traditional diagnostic methods, enhancing early and accurate diagnosis, leading to better-targeted treatments and improved outcomes. The study provides a strong foundation for future research and clinical applications in migraine diagnosis.

偏头痛的诊断依赖于主观的患者报告和国际头痛学会指南,导致误诊。在临床实践中,需要客观、可靠的诊断工具。为了解决这个问题,该研究提出了一个利用功能性近红外光谱(fNIRS)来区分健康个体、有先兆和没有先兆的间歇期偏头痛患者的框架。该方法主要关注前额皮质(PFC)的活动,在时间、频率和时频域提取含氧血红蛋白、脱氧血红蛋白和总血红蛋白的特征。XGBoost应用于左PFC氧合血红蛋白的时频特征表现出出色的性能,达到92%的平衡精度,89%的灵敏度,95%的特异性和89%的F1评分。与机器学习相结合的非侵入性fNIRS为传统诊断方法提供了一种有前途的、具有成本效益的替代方法,增强了早期和准确的诊断,从而实现了更有针对性的治疗和改善的结果。本研究为今后偏头痛诊断的研究和临床应用奠定了坚实的基础。
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引用次数: 0
Use of Mitochondrial Delayed Luminescence Measurements From Brain Tissue to Optimize Photobiomodulation Prarameters in Alzheimer's Disease Mice 利用脑组织线粒体延迟发光测量优化阿尔茨海默病小鼠的光生物调节参数。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-23 DOI: 10.1002/jbio.202500151
Hong Bae Kim, Chang Kyu Sung

The therapeutic potential of photobiomodulation (PBM) for Alzheimer's disease (AD) was evaluated by examining β-amyloid accumulation, microglial activation, and memory function. Mitochondrial delayed luminescence (m-DL), an indirect mitochondrial marker, was measured by irradiating 2 J/cm2 of 808 nm near-infrared light to the exposed brain surface of anesthetized 5XFAD mice. Based on m-DL findings, behavioral PBM was applied transcranially to the intact scalp using the same fluence at 30, 40, and 80 Hz with respective duty cycles and durations. The 80 Hz setting produced the longest m-DL decay time and selectively improved recognition memory. Immunofluorescence revealed a significant 0.27-fold decrease in β-amyloid and 0.13-fold decrease in microglial activation without changes in neuronal density. Limitations include the small sample size, short duration, and the need to validate m-DL with established bioenergetic assays. Despite these, findings suggest that optimized PBM may offer a promising noninvasive intervention for AD, warranting further long-term investigation.

通过检测β-淀粉样蛋白积累、小胶质细胞激活和记忆功能,评估光生物调节(PBM)治疗阿尔茨海默病(AD)的潜力。采用2 J/cm2 808 nm近红外光照射麻醉5XFAD小鼠暴露的脑表面,测量线粒体延迟发光(m-DL),这是一种间接的线粒体标志物。基于m-DL的发现,行为性PBM经颅应用于完整的头皮,在30,40和80hz的不同占空比和持续时间下使用相同的影响。80hz设置产生了最长的m-DL衰减时间,并选择性地改善了识别记忆。免疫荧光显示β-淀粉样蛋白显著降低0.27倍,小胶质细胞活性显著降低0.13倍,但神经元密度未发生变化。局限性包括样本量小,持续时间短,需要用已建立的生物能量测定法验证m-DL。尽管如此,研究结果表明,优化的PBM可能为阿尔茨海默病提供了一种有希望的无创干预手段,值得进一步的长期研究。
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引用次数: 0
Hyperspectral Imaging Combined With Deep Learning for Precision Grading of Clear Cell Renal Cell Carcinoma 高光谱成像结合深度学习对透明细胞肾细胞癌的精确分级。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-23 DOI: 10.1002/jbio.202500180
Guoxia Zhang, Jing Zhang, Xulei Wang, Lv Haiyue, Mengqiu Zhang, Chunlei Wang, Xiaoqing Yang

This study presents an integrated approach combining hyperspectral imaging (HSI) and deep learning for accurate grading of clear cell renal cell carcinoma (ccRCC). A refined preprocessing pipeline—including wavelet-based denoising and principal component analysis (PCA)—effectively enhances image quality and reduces data dimensionality. The proposed architecture utilizes a 1D convolutional neural network with attention mechanisms and a Transformer module to extract both local spectral features and global contextual information. Evaluated on a dataset of 80 ccRCC samples, the model achieves 90.32% accuracy, 89.65% sensitivity, and 90.15% specificity, outperforming several state-of-the-art models. These findings demonstrate the potential of HSI-based deep learning systems to improve diagnostic accuracy and support more precise, personalized treatment planning in renal oncology.

本研究提出了一种结合高光谱成像(HSI)和深度学习的透明细胞肾细胞癌(ccRCC)准确分级的综合方法。精细的预处理流程——包括基于小波的去噪和主成分分析(PCA)——有效地提高了图像质量,降低了数据维数。所提出的架构利用具有注意机制的一维卷积神经网络和Transformer模块来提取局部光谱特征和全局上下文信息。在80个ccRCC样本的数据集上进行评估,该模型达到了90.32%的准确率,89.65%的灵敏度和90.15%的特异性,优于几个最先进的模型。这些发现证明了基于hsi的深度学习系统在提高肾肿瘤诊断准确性和支持更精确、个性化的治疗计划方面的潜力。
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引用次数: 0
Handheld Ultrasound and Photoacoustic Dual-Modal Imaging With Sound Speed Correction Guided by Ultrasound Image 超声图像引导声速校正的手持式超声光声双模成像。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-22 DOI: 10.1002/jbio.202500203
Yijie Huang, Lin Huang, Renbin Zhong

In recent years, handheld ultrasound (HHU) devices have made rapid advancements in the point-of-care ultrasound (US) field. These devices feature smaller packaging, user-friendly interfaces, and lower costs, providing unprecedented mobility and convenience to emergency departments. For traditional photoacoustic imaging (PAI) systems, although the integration of US probes and laser sources can be achieved—such as through the use of specific optical fibers and custom molds for portable imaging or miniaturized imaging devices based on laser diode (LED)—these systems require relatively bulky and expensive or separated acquisition systems. In this study, leveraging the development of HHU devices, we introduced a cost-effective 32-channel HHU (integrating the acquisition system into the US probe) into PAI to build a HHU-based US/PA dual-modal imaging system and using HHU images guide speed of sound (SoS) correction for PAI reconstruction. The proposed approach can advance low-cost, miniaturized US/PA dual-modal imaging technologies.

近年来,手持式超声(HHU)设备在护理点超声(美国)领域取得了快速发展。这些设备具有更小的包装、用户友好的界面和更低的成本,为急诊科提供了前所未有的移动性和便利性。对于传统的光声成像(PAI)系统,虽然可以实现美国探头和激光源的集成,例如通过使用特定的光纤和定制的便携式成像模具或基于激光二极管(LED)的小型化成像设备,但这些系统需要相对笨重和昂贵的或分离的采集系统。在本研究中,利用HHU设备的发展,我们将一种具有成本效益的32通道HHU(将采集系统集成到美国探头中)引入PAI,构建基于HHU的US/PA双峰成像系统,并使用HHU图像指导声速校正进行PAI重建。该方法可以推进低成本、小型化的US/PA双峰成像技术。
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引用次数: 0
The Utility of Fourier Transform Infrared Spectroscopy (FTIR) for Detecting Exercise-Induced Changes in the Human Hand Epidermis 傅立叶变换红外光谱(FTIR)在检测人体手部表皮运动引起的变化中的应用。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-22 DOI: 10.1002/jbio.202500173
Paweł Król, Zbigniew Obmiński, Adam Reich, Wojciech Czarny, Józef Cebulski, Joanna Depciuch, Michał Zamorski, Katarzyna Stępień, Łukasz Rydzik

The literature lacks data on transient infrared spectral changes in the epidermis following physical exercise. This study tested the hypothesis that a single exercise session affects selected spectral bands (3270–1045 cm−1) in healthy individuals. Eight professional tennis players completed a 1.5-h moderate-intensity training session. Epidermal samples from the inner hand were collected before and after exercise, following cleaning with distilled water and 96% PA ethyl alcohol. Samples were analyzed using Fourier Transform Infrared Spectroscopy (FTIR). Absorbance values were recorded for 12 peaks. Significant correlations were observed for the 3270 cm−1 (r = 0.976) and 1045 cm−1 (r = 0.754) peaks. Notably, post-exercise increases were found at 1453 cm−1 (lipids/proteins), 1078 cm−1 (phospholipids), and 1045 cm−1 (carbohydrates). No significant changes were observed for other peaks, though a general upward trend appeared. Inter-individual variability was high. FTIR may detect acute epidermal biochemical responses to exercise, especially in lipid- and phospholipid-related structures.

文献缺乏关于运动后表皮瞬态红外光谱变化的数据。这项研究验证了一个假设,即一次锻炼会影响健康个体的选定光谱波段(3270-1045 cm-1)。8名职业网球运动员完成了1.5小时的中等强度训练。在运动前后收集内侧手表皮样本,用蒸馏水和96% PA乙醇清洗。采用傅里叶变换红外光谱(FTIR)对样品进行分析。记录12个峰的吸光度值。在3270 cm-1 (r = 0.976)和1045 cm-1 (r = 0.754)峰上观察到显著相关。值得注意的是,运动后增加了1453 cm-1(脂质/蛋白质),1078 cm-1(磷脂)和1045 cm-1(碳水化合物)。其他峰值未见显著变化,但总体呈上升趋势。个体间变异性高。FTIR可以检测运动后急性表皮生化反应,特别是脂质和磷脂相关结构。
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引用次数: 0
Enhancing the Accuracy of Skin Lesion Diagnosis Using Hyperspectral Imaging and Deep Learning 利用高光谱成像和深度学习提高皮肤病变诊断的准确性。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-12 DOI: 10.1002/jbio.202500182
Huiwen Zheng, Yunqing Ren, Lijuan Yu, Zhenying Cai, Xin Xia, Guoqiang Qi, Jing Li, Chen Shen

This study presents a novel diagnostic approach that integrates hyperspectral imaging (HSI) with deep learning to discriminate among dermatitis, actinic keratosis (AK), and seborrheic keratosis (SK). We evaluated 60 intraoperative clinical specimens and achieved 93% accuracy, 91% sensitivity, and 95% specificity in three-class classification. A Savitzky–Golay filter was applied to the raw spectra to enhance the signal-to-noise ratio and data fidelity, while first-derivative spectral analysis enabled the model to capture subtle biochemical and morphological differences among lesions. Our results demonstrate that the combined HSI–deep-learning framework can accelerate dermatologic diagnosis and reduce error rates. This methodology not only provides a robust tool for clinical decision support in dermatology but also holds promise for wider adoption across medical imaging workflows. Future work will focus on scalability, cost–benefit optimization, and seamless integration with existing diagnostic platforms.

本研究提出了一种新的诊断方法,将高光谱成像(HSI)与深度学习相结合,用于区分皮炎、光化性角化病(AK)和脂溢性角化病(SK)。我们对60例术中临床标本进行了评估,三类分类的准确率为93%,灵敏度为91%,特异性为95%。对原始光谱进行Savitzky-Golay滤波以提高信噪比和数据保真度,而一阶导数光谱分析使模型能够捕捉病变之间细微的生化和形态学差异。我们的研究结果表明,结合hsi -深度学习框架可以加速皮肤病诊断并降低错误率。该方法不仅为皮肤科临床决策支持提供了一个强大的工具,而且还有望在医学成像工作流程中得到更广泛的采用。未来的工作将集中在可扩展性、成本效益优化以及与现有诊断平台的无缝集成上。
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引用次数: 0
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Journal of Biophotonics
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