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Automatic detection of ischemic necrotic sites in small intestinal tissue using hyperspectral imaging and transfer learning 利用高光谱成像和迁移学习技术自动检测小肠组织中的缺血性坏死部位。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-29 DOI: 10.1002/jbio.202300315
Lechao Zhang, Jianxia Xue, Yi Xie, Danfei Huang, Zhonghao Xie, Libin Zhu, Xiaoqing Chen, Guihua Cui, Shujat Ali, Guangzao Huang, Xiaojing Chen

Acquiring large amounts of hyperspectral data of small intestinal tissue with real labels in the clinic is difficult, and the data shows inter-patient variability. Building an automatic identification model using a small dataset presents a crucial challenge in obtaining a strong generalization of the model. This study aimed to explore the performance of hyperspectral imaging and transfer learning techniques in the automatic identification of normal and ischemic necrotic sites in small intestinal tissue. Hyperspectral data of small intestinal tissues were collected from eight white rabbit samples. The transfer component analysis (TCA) method was performed to transfer learning on hyperspectral data between different samples and the variability of data distribution between samples was reduced. The results showed that the TCA transfer learning method improved the accuracy of the classification model with less training data. This study provided a reliable method for single-sample modelling to detect necrotic sites in small intestinal tissue .

在临床中获取具有真实标签的小肠组织的大量高光谱数据是困难的,并且数据显示出患者之间的差异。使用小数据集构建自动识别模型是获得模型强泛化的关键挑战。本研究旨在探讨高光谱成像和迁移学习技术在小肠组织正常和缺血性坏死部位自动识别中的应用。采集了8只白兔小肠组织的高光谱数据。采用传递分量分析(TCA)方法对不同样本间的高光谱数据进行迁移学习,降低了样本间数据分布的可变性。结果表明,TCA迁移学习方法在训练数据较少的情况下提高了分类模型的准确率。本研究提供了一种可靠的单样本模型检测小肠组织坏死部位的方法。这篇文章受版权保护。版权所有。
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引用次数: 0
Optical clearing of human skin: Molecular modeling and in vivo OCT study 人体皮肤光学清除:分子模型和体内oct研究。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-29 DOI: 10.1002/jbio.202300354
K. V. Berezin, E. V. Grabarchuk, A. M. Lichter, K. N. Dvoretski, V. V. Tuchin

The results of in vivo immersion optical clearing of human skin under the action of two different optical clearing agents (OCAs), such as an aqueous sucrose solution and a radiographic contrast agent Omnipaque™ 300 (iohexol), were obtained with the use of optical coherence tomography (OCT) method. The rate of reduction of light scattering coefficient, obtained through an averaged A-scan of the OCT image in the region of dermis within the depths from 350 to 700 μm, were determined to evaluate the efficiency of optical clearing (EOC). The correlations between the EOC and the energy of intermolecular interaction of OCAs with a fragment of collagen peptide have been established as a result of molecular modeling by quantum chemistry methods HF/STO3G/DFT/B3LYP/6—311G(d) of a number of OCAs (glycerol, iohexol, sucrose, ribose, fructose, glucose) with mimetic peptide of collagen (GPH)3.

使用OCT方法获得两种不同的光学清除剂(OCAs)(如蔗糖水溶液和放射造影剂Omnipaque™300(碘己醇))作用下人体皮肤的体内浸泡光学清除结果。通过对350 ~ 700 μm深度范围内的OCT图像进行平均a扫描,确定光散射系数的降低率,以评估光学清除(EOC)的效率。利用量子化学方法HF/STO3G/ DFT/B3LYP/6 - 311G(d)对几种OCAs(甘油、碘己醇、蔗糖、核苷酸、果糖、葡萄糖)与胶原模拟肽(GPH)3进行分子模拟,建立了EOC与OCAs与胶原肽片段分子间相互作用能量之间的相关性。这篇文章受版权保护。版权所有。
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引用次数: 0
Review of optical methods for noninvasive imaging of skin fibroblasts—From in vitro to ex vivo and in vivo visualization 皮肤成纤维细胞非侵入性成像的光学方法综述——从体外到离体和体内可视化。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-29 DOI: 10.1002/jbio.202300223
Viktor V. Nikolaev, Yury V. Kistenev, Marius Kröger, Hala Zuhayri, Maxim E. Darvin

Fibroblasts are among the most common cell types in the stroma responsible for creating and maintaining the structural organization of the extracellular matrix in the dermis, skin regeneration, and a range of immune responses. Until now, the processes of fibroblast adaptation and functioning in a varying environment have not been fully understood. Modern laser microscopes are capable of studying fibroblasts in vitro and ex vivo. One-photon- and two-photon-excited fluorescence microscopy, Raman spectroscopy/microspectroscopy are well-suited noninvasive optical methods for fibroblast imaging in vitro and ex vivo. In vivo staining-free fibroblast imaging is not still implemented. The exception is fibroblast imaging in tattooed skin. Although in vivo noninvasive staining-free imaging of fibroblasts in the skin has not yet been implemented, it is expected in the future. This review summarizes the state-of-the-art in fibroblast visualization using optical methods and discusses the advantages, limitations, and prospects for future noninvasive imaging.

成纤维细胞是基质中最常见的细胞类型之一,负责在真皮层中创建和维持细胞外基质(ECM)的结构组织,皮肤再生和一系列免疫反应。到目前为止,成纤维细胞在不同环境中的适应和功能过程尚未完全了解。现代激光显微镜能够在体外和离体研究成纤维细胞。单光子和双光子激发荧光显微镜、拉曼光谱/显微光谱是非常适合于成纤维细胞体外和离体成像的非侵入性光学方法。体内无染色成纤维细胞成像仍未实现。唯一的例外是纹身皮肤的成纤维细胞成像。虽然皮肤成纤维细胞的体内无创无染色成像尚未实现,但未来有望实现。本文综述了光学方法在成纤维细胞可视化方面的研究进展,并讨论了非侵入性成像的优点、局限性和前景。这篇文章受版权保护。版权所有。
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引用次数: 0
Angle-dependent light scattering in tissue phantoms for the case of thin bone layers with predominant forward scattering 以前向散射为主的薄骨层在组织幻象中的角度依赖光散射。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-29 DOI: 10.1002/jbio.202300358
Tom Witke, Eduard Kuhn, Fabian Teichert, Christian Goßler, Ulrich Theodor Schwarz, Angela Thränhardt

The cochlea forms a key element of the human auditory system in the temporal bone. Damage to the cochlea continues to produce significant impairment for sensory reception of environmental stimuli. To improve this impairment, the optical cochlear implant forms a new research approach. A prerequisite for this method is to understand how light propagation, as well as scattering, reflection, and absorption, takes place within the cochlea. We offer a method to study the light distribution in the human cochlea through phantom materials which have the objective to mimic the optical behavior of bone and Monte-Carlo simulations. The calculation of an angular distribution after scattering requires a phase function. Often approximate functions like Henyey–Greenstein, two-term Henyey–Greenstein or Legendre polynomial decompositions are used as phase function. An alternative is to exactly calculate a Mie distribution for each scattering event. This method provides a better fit to the data measured in this work.

耳蜗是颞骨中人类听觉系统的重要组成部分。耳蜗的损伤继续对环境刺激的感觉接收产生重大损害。为了改善这种缺陷,光学人工耳蜗形成了一种新的研究途径。这种方法的先决条件是了解光的传播、散射、反射和吸收是如何在耳蜗内发生的。我们提出了一种通过模拟骨光学行为的模拟材料和蒙特卡罗模拟来研究人耳蜗内光分布的方法。计算散射后的角分布需要一个相函数。通常近似函数如Henyey-Greenstein,两项Henyey-Greenstein或Legendre多项式分解被用作相函数。另一种方法是精确地计算每个散射事件的米氏分布。该方法能更好地拟合本工作中测量的数据。这篇文章受版权保护。版权所有。
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引用次数: 0
Near-infrared light does not induce DNA damage in human dermal fibroblasts 近红外光不会诱导人皮肤成纤维细胞DNA损伤。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-29 DOI: 10.1002/jbio.202300388
Jessica Mineroff, Jennifer Y. Wang, Raichel Philip, Evan Austin, Jared Jagdeo

Photobiomodulation (PBM) can be used to treat a range of conditions in dermatology. PBM refers to the changes induced by red (RL, 620–700 nm) and near-infrared (NIR, 700–1440 nm) light. Light radiation-induced DNA damage is a major contributor to aging and skin cancer. It is crucial to study the effects of PBM on DNA to ensure safety. Our lab previously demonstrated that RL (633 ± 6 nm) did not result in human dermal fibroblasts (HDFs) DNA damage. This study employed similar methods to investigate NIR effects. Commercially available LED-NIR (830 ± 5 nm) panels (66, 132, and 264 J/cm2) did not result in DNA damage measured by cyclobutane pyrimidine dimers and pyrimidine-6,4-pyrimidone photoproducts in HDFs compared to temperature-matched controls immediately, 3 h, and 24 h following irradiation and compared to positive and negative controls. This demonstrates that LED-NIR does not damage DNA in HDFs in vitro.

光生物调节(PBM)可用于治疗一系列皮肤病。PBM是指红光(RL, 620-700 nm)和近红外光(NIR, 700-1440 nm)引起的变化。光辐射引起的DNA损伤是导致衰老和皮肤癌的主要原因。研究PBM对DNA的影响是保证其安全性的关键。我们的实验室先前证明RL(633±6 nm)不会导致人真皮成纤维细胞(HDFs) DNA损伤。本研究采用类似的方法来研究近红外效应。市售LED NIR(830±5 nm)面板(66、132和264 J/cm2)与温度匹配的对照、照射后3小时和24小时以及阳性和阴性对照相比,在HDFs中通过环丁烯嘧啶二聚体和嘧啶-6,4-嘧啶光产物测量的DNA损伤没有发生。这表明LED-NIR在体外不破坏HDFs中的DNA。这篇文章受版权保护。版权所有。
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引用次数: 0
Moving grating-based laser heterodyne digital holographic microscopy system for measuring dynamic phase of living cell attachment 基于移动光栅的活细胞附着动态相位测量激光外差数字全息显微系统。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-27 DOI: 10.1002/jbio.202300355
Peng Wang, Shizhou Wu, Xia Zhang, Boquan Qin, Guoying Feng

We propose a laser heterodyne digital holography microscopy system based on a moving grating, which uses the Doppler principle between a moving grating and beam to achieve a low-frequency bias between the diffracted beams, abandoning traditional heterodyne digital holography that requires multiple acousto-optic modulators. The dynamic phase distribution obtained using the laser heterodyne digital holography phase-reconstruction algorithm was more realistic and analyzable than the results of the angular spectrum algorithm. The structure and algorithm were used to capture the shape characteristics of mouse fibroblasts after ~2 h of incubation (37°C, 5% CO2), and the dynamic phase distribution of the cells was monitored in real-time during the attachment process. The system proposed in this study, with its high spatial resolution and high-precision phase measurement capability, is suitable for both static and live cells.

本文提出了一种基于移动光栅的激光外差数字全息显微系统,该系统利用移动光栅和光束之间的多普勒原理,实现了衍射光束之间的低频偏置,从而消除了传统外差数字全息术需要多个声光调制器的缺点。采用激光外差数字全息相位重建算法(HDHA)得到的动态相位分布比角谱算法(ASA)得到的结果更真实、可分析。利用该结构和算法捕获小鼠成纤维细胞(37℃,5% CO2)孵育约2 h后的形状特征,并实时监测细胞在附着过程中的动态相位分布。本研究提出的系统具有高空间分辨率和高精度相位测量能力,适用于静态和活细胞。这篇文章受版权保护。版权所有。
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引用次数: 0
Effect of photobiomodulation at 830 nm on gene expression correlated with JAK/STAT signalling in wounded and diabetic wounded fibroblasts in vitro 830 nm光生物调节对体外损伤及糖尿病损伤成纤维细胞JAK/STAT信号相关基因表达的影响
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-27 DOI: 10.1002/jbio.202300230
Thobekile S. Leyane, Sandy W. Jere, Nicolette N. Houreld

Treatment of chronic diabetic wounds is an ongoing socio-economic challenge. Dysregulated signalling pathways characterise cells from chronic diabetic wounds. Photobiomodulation (PBM) stimulates healing by eliciting photochemical effects that affect gene regulation. JAK/STAT signalling is a primary signal transduction pathway involved in wound healing. This in vitro study aimed to determine if PBM at 830 nm and a fluence of 5 J/cm2 regulates genes related to JAK/STAT signalling in wounded and diabetic wounded fibroblast cells. A continuous wave diode laser (12.53 mW/cm2) was used to irradiate cells. Forty-eight hours post-PBM, RT-qPCR was used to analyse 84 genes related to JAK/STAT signalling. Five genes were upregulated and four downregulated in wounded cell models, while six genes were downregulated in diabetic wounded models. The results show drastic gene expression differences between wounded and diabetic wounded cell models in response to PBM using 830 nm.

慢性糖尿病伤口的治疗是一项持续的社会经济挑战。失调的信号通路是慢性糖尿病伤口细胞的特征。光生物调节(PBM)通过引发影响基因调控的光化学效应来刺激愈合。JAK/STAT信号是参与伤口愈合的主要信号转导途径。这项体外研究旨在确定在830 nm和5 J/cm2的影响下PBM是否调节损伤和糖尿病损伤成纤维细胞中JAK/STAT信号相关基因。用连续波二极管激光器(12.53 mW/cm2)照射细胞。pbm后48小时,RT-qPCR分析了84个与JAK/STAT信号传导相关的基因。在损伤细胞模型中有5个基因表达上调,4个基因表达下调,而在糖尿病损伤细胞模型中有6个基因表达下调。结果显示,在830 nm的PBM作用下,损伤细胞模型和糖尿病损伤细胞模型的基因表达存在显著差异。这篇文章受版权保护。版权所有。
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引用次数: 0
Evaluation of 10 current image reconstruction algorithms for linear array photoacoustic imaging 线阵光声成像中10种现有图像重建算法的评价。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-27 DOI: 10.1002/jbio.202300117
Ravi Prakash, Rayyan Manwar, Kamran Avanaki

Various reconstruction algorithms have been implemented for linear array photoacoustic imaging systems with the goal of accurately reconstructing the strength absorbers within the tissue being imaged. Since the existing algorithms have been introduced by different research groups and the context of performance evaluation was not consistent, it is difficult to make a fair comparison between them. In this study, we systematically compared the performance of 10 published image reconstruction algorithms (DAS, UBP, pDAS, DMAS, MV, EIGMV, SLSC, GSC, TR, and FD) using in-vitro phantom data. Evaluations were conducted based on lateral resolution of the reconstructed images, computational time, target detectability, and noise sensitivity. We anticipate the outcome of this study will assist researchers in selecting appropriate algorithms for their linear array PA imaging applications.

为了准确地重建被成像组织内的强度吸收体,各种重建算法已经被用于线阵光声成像系统。由于现有的算法是由不同的研究小组引入的,并且性能评估的背景并不一致,因此很难对它们进行公平的比较。在这项研究中,我们系统地比较了十种已发表的图像重建算法(DAS、UBP、pDAS、DMAS、MV、EIGMV、SLSC、GSC、TR和FD)的性能。根据重建图像的横向分辨率、计算时间、目标可检测性和噪声灵敏度进行评估。我们期望这项研究的结果将有助于研究人员为他们的线性阵列成像应用选择合适的算法。这篇文章受版权保护。版权所有。
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引用次数: 0
Experimental study on the mechanical properties and thermal damage of laser welding the ruptured flexor digitorum longus tendons 激光焊接断裂指屈肌腱力学性能及热损伤的实验研究。
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-27 DOI: 10.1002/jbio.202300373
Jun Huang, Jinjin Wu, Yuxin Chen, Tongyu Xu, Kehong Wang, Yunfeng Rui

To investigate the influence of laser parameters on the performance of tendon tissue, experiments were conducted and the process of laser-assisted tendon welding was studied. Several conclusions were drawn by analyzing the effects of laser parameters on the tensile strength, microstructure, and collagen content of tendon tissue incisions. The optimal parameters for laser welding tendon tissue were found to be a laser power of 5 W, a scanning speed of 150 mm/s, and a defocus amount of 0 mm, resulting in a laser energy density of 32.164 J/cm2. At these parameters, the percentage of inactivated cells due to thermal damage was only 23.78%, and the tensile strength of the tendon tissue incisions reached 0.61 MPa. Additionally, the collagen content around the incision was measured to be 33.679%, composed of type I and type III collagens, with the latter accounting for 50.714% of the total collagen content.

为了研究激光参数对肌腱组织性能的影响,进行了激光辅助肌腱焊接的实验研究。通过分析激光参数对肌腱组织切口的拉伸强度、显微结构和胶原蛋白含量的影响,得出了一些结论。激光焊接肌腱组织的最佳参数为激光功率为5 W,扫描速度为150 mm/s,离焦量为0 mm,激光能量密度为32.164 J/cm2。在这些参数下,由于热损伤而失活的细胞比例仅为23.78%,肌腱组织切口的抗拉强度达到0.61 MPa。另外,测得切口周围胶原含量为33.679%,由I型胶原和III型胶原组成,后者占总胶原含量的50.714%。这篇文章受版权保护。版权所有。
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引用次数: 0
Femtosecond optical Kerr effect in normal and grades of cancerous breast tissues as a new optical biopsy method 飞秒光学Kerr效应在正常和分级癌性乳腺组织中的应用
IF 2.8 3区 物理与天体物理 Q1 Engineering Pub Date : 2023-11-27 DOI: 10.1002/jbio.202300344
Henry J. Meyer, Sandra Mamani, Zhi Li, Lingyan Shi, Robert R. Alfano

This study reports on the first use of the optical Kerr effect (OKE) in breast cancer tissue. This proposed optical biopsy method utilizes a Femtosecond Optical Kerr Gate to detect changes in dielectric relaxation and conductivity created by a cancerous infection. Here, the temporal behavior of the OKE is tracked in normal and cancerous samples of human and mouse breast. These tissues display a double peaked temporal structure and its decay rate changes depending on the tissue's infection status. The decay of the secondary peak, attributed to ultrafast plasma response, indicates that the tissue's conductivity has doubled once infected. A slower molecular contribution to the Kerr effect can also be observed in healthy tissues. These findings suggest two possible biomarkers for the use of OKE in optical biopsy. Both markers arise from alterations in the infected tissue's cellular structure, which changes the rate at which electronic and molecular processes occur.

本文报道了光学克尔效应(Optical Kerr Effect, OKE)在乳腺癌组织中的首次应用。这种提出的光学活检方法利用飞秒光学克尔门来检测由癌性感染引起的介电松弛和电导率的变化。在这里,OKE的时间行为被跟踪在正常和癌变的人类和小鼠的乳房样本。这些组织呈现双峰颞结构,其衰减率随组织感染状态的变化而变化。次级峰的衰减,归因于超快的等离子体反应,表明组织的电导率一旦被感染就会翻倍。在健康组织中也可以观察到对克尔效应的较慢的分子贡献。这些发现提示了在光学活检中使用OKE的两种可能的生物标志物。这两种标记都是由受感染组织细胞结构的改变引起的,这改变了电子和分子过程发生的速度。这篇文章受版权保护。版权所有。
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引用次数: 0
期刊
Journal of Biophotonics
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