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Ultrabroadband two-beam coherent anti-Stokes Raman scattering and spontaneous Raman spectroscopy of organic fluids: A comparative study 有机流体的超宽带双光束相干反斯托克斯拉曼散射和自发拉曼光谱:比较研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-09 DOI: 10.1002/jbio.202300505
Timea Koch, Roland Ackermann, Axel Stoecker, Tobias Meyer-Zedler, Thomas Gabler, Tom Lippoldt, Jeannine Missbach-Guentner, Christoph Russmann, Jürgen Popp, Stefan Nolte

Spontaneous Raman spectroscopy is a well-established diagnostic tool, allowing for the identification of all Raman active species with a single measurement. Yet, it may suffer from low-signal intensity and fluorescent background. In contrast, coherent anti-Stokes Raman scattering (CARS) offers laser-like signals, but the traditional approach lacks the multiplex capability of spontaneous Raman spectroscopy. We present an ultrabroadband CARS setup which aims at exciting the full spectrum (300–3700 cm−1) of biological molecules. A dual-output optical parametric amplifier provides a ~7 fs pump/Stokes and a ~700 fs probe pulse. CARS spectra of DMSO, ethanol, and methanol show great agreement with spontaneous Raman spectroscopy and superiority in fluorescent environments. The spectral resolution proves sufficient to differentiate between the complex spectra of L-proline and hydroxyproline. Moreover, decay constants in the sub picosecond range are determined for individual Raman transitions, providing an additional approach for sample characterization.

自发拉曼光谱是一种成熟的诊断工具,只需一次测量就能识别所有拉曼活性物种。然而,它可能存在信号强度低和荧光背景的问题。相比之下,相干反斯托克斯拉曼散射(CARS)可提供类似激光的信号,但这种传统方法缺乏自发拉曼光谱的复用能力。我们提出了一种超宽带 CARS 装置,旨在激发生物分子的全光谱(300-3700 cm-1)。双输出光参量放大器提供约 7 fs 的泵浦/斯托克斯脉冲和约 700 fs 的探测脉冲。二甲基亚砜、乙醇和甲醇的 CARS 光谱与自发拉曼光谱非常吻合,在荧光环境中也非常优越。光谱分辨率足以区分 L-脯氨酸和羟脯氨酸的复杂光谱。此外,还确定了单个拉曼跃迁在亚皮秒范围内的衰减常数,为样品表征提供了另一种方法。
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引用次数: 0
Relationship between amide ratio assessed by Fourier-transform infrared spectroscopy: A biomarker candidate for polycythemia vera disease 傅立叶变换红外光谱法评估的酰胺比率之间的关系:多发性红细胞症的候选生物标志物
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-08 DOI: 10.1002/jbio.202400162
Zozan Guleken, Aynur Aday, Ayşe Gül Bayrak, İpek Yönal Hindilerden, Meliha Nalçacı, Jozef Cebulski, Joanna Depciuch

The study utilized Fourier transform infrared (FTIR) spectroscopy coupled with chemometrics to investigate protein composition and structural changes in the blood serum of patients with polycythemia vera (PV). Principal component analysis (PCA) revealed distinct biochemical properties, highlighting elevated absorbance of phospholipids, amides, and lipids in PV patients compared to healthy controls. Ratios of amide I/amide II and amide I/amide III indicated alterations in protein structures. Support vector machine analysis and receiver operating characteristic curves identified amide I as a crucial predictor of PV, achieving 100% accuracy, sensitivity, and specificity, while amide III showed a lower predictive value (70%). PCA analysis demonstrated effective differentiation between PV patients and controls, with key wavenumbers including amide II, amide I, and CH lipid vibrations. These findings underscore the potential of FTIR spectroscopy for diagnosing and monitoring PV.

该研究利用傅立叶变换红外光谱(FTIR)和化学计量学方法研究了多发性红细胞症(PV)患者血清中的蛋白质组成和结构变化。主成分分析(PCA)揭示了与健康对照组相比,多发性红细胞症患者血清中磷脂、酰胺和脂质的吸收率升高,从而显示出不同的生化特性。酰胺I/酰胺II和酰胺I/酰胺III的比率表明蛋白质结构发生了改变。支持向量机分析和接收器操作特征曲线确定酰胺 I 是预测脑积水的重要指标,准确率、灵敏度和特异性均达到 100%,而酰胺 III 的预测值较低(70%)。PCA 分析表明,酰胺 II、酰胺 I 和 CH 脂质振动等关键波数能有效区分 PV 患者和对照组。这些研究结果凸显了傅立叶变换红外光谱在诊断和监测真性红斑狼疮方面的潜力。
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引用次数: 0
Toward noncontact macroscopic imaging of multiple cancers using multi-spectral inelastic scattering detection 利用多光谱非弹性散射检测技术实现多发性癌症的非接触式宏观成像。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-04 DOI: 10.1002/jbio.202400087
Sandryne David, Nassim Ksantini, Frédérick Dallaire, Katherine Ember, François Daoust, Guillaume Sheehy, Costas G. Hadjipanayis, Kevin Petrecca, Brian C. Wilson, Frédéric Leblond

Here we introduce a Raman spectroscopy approach combining multi-spectral imaging and a new fluorescence background subtraction technique to image individual Raman peaks in less than 5 seconds over a square field-of-view of 1-centimeter sides with 350 micrometers resolution. First, human data is presented supporting the feasibility of achieving cancer detection with high sensitivity and specificity – in brain, breast, lung, and ovarian/endometrium tissue – using no more than three biochemically interpretable biomarkers associated with the inelastic scattering signal from specific Raman peaks. Second, a proof-of-principle study in biological tissue is presented demonstrating the feasibility of detecting a single Raman band – here the CH2/CH3 deformation bands from proteins and lipids – using a conventional multi-spectral imaging system in combination with the new background removal method. This study paves the way for the development of a new Raman imaging technique that is rapid, label-free, and wide field.

在此,我们介绍一种拉曼光谱方法,该方法结合了多光谱成像和新型荧光背景减除技术,可在不到 5 秒钟的时间内对边长为 1 厘米、分辨率为 350 微米的正方形视场中的单个拉曼峰进行成像。首先,介绍的人体数据证明了在脑部、乳腺、肺部和卵巢/子宫内膜组织中实现高灵敏度和高特异性癌症检测的可行性。其次,介绍了在生物组织中进行的原理验证研究,证明了使用传统多光谱成像系统并结合新的背景消除方法检测单一拉曼光谱带(此处为蛋白质和脂质的 CH2/CH3 变形谱带)的可行性。这项研究为开发快速、无标记、宽领域的新型拉曼成像技术铺平了道路。
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引用次数: 0
The effect of low-dose photodynamic therapy using the photosensitizer chloroaluminum phthalocyanine on a scratch wound model in skin fibroblasts 使用光敏剂氯铝酞菁的低剂量光动力疗法对皮肤成纤维细胞划痕伤口模型的影响。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-04 DOI: 10.1002/jbio.202400033
Efstathios Giannakopoulos, Annita Katopodi, Michail Rallis, Konstantinos Politopoulos, Eleni Alexandratou

Different approaches on wound healing have been developed over the years but they suffer from high costs and adverse effects for the patients. The current paper was designed to study low dose PDT, a novel healing approach, in an in vitro fibroblasts wound healing model. Chloroaluminum phthalocyanine (AlClPc) was used as photosensitizer and was activated by a red diode laser at 661 nm. After PDT optimization, wound closure rate and reactive oxygen species were quantified by image processing and analysis. Our results revealed that wound healing rates were significantly higher in PDT treated groups than in the control. Additionally, the study revealed that a prolonged ROS increase did not promote wound closure, while a small increase acted as a trigger, resulting in faster wound closure. Concluding, low dose PDT using AlClPc enhances wound healing in vitro in a ROS dependent manner, allowing the assumption of similar positive effects in vivo.

多年来,人们开发了不同的伤口愈合方法,但这些方法成本高昂,且对患者有不良影响。本文旨在体外成纤维细胞伤口愈合模型中研究低剂量光导光疗这种新型愈合方法。氯化铝酞菁(AlClPc)被用作光敏剂,由波长为 661 纳米的红色二极管激光器激活。优化光导疗法后,通过图像处理和分析对伤口闭合率和活性氧进行量化。结果显示,PDT 治疗组的伤口愈合率明显高于对照组。此外,研究还发现,长时间的活性氧增加并不会促进伤口闭合,而少量的活性氧增加则会触发伤口闭合,从而加快伤口闭合。总之,使用 AlClPc 的低剂量光紫外疗法能以依赖 ROS 的方式促进体外伤口愈合,因此可以推测在体内也会产生类似的积极效果。
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引用次数: 0
Unpaired fundus image enhancement based on constrained generative adversarial networks 基于约束生成式对抗网络的非配对眼底图像增强。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-04 DOI: 10.1002/jbio.202400168
Luyao Yang, Shenglan Yao, Pengyu Chen, Mei Shen, Suzhong Fu, Jiwei Xing, Yuxin Xue, Xin Chen, Xiaofei Wen, Yang Zhao, Wei Li, Heng Ma, Shiying Li, Valery V. Tuchin, Qingliang Zhao

Fundus photography (FP) is a crucial technique for diagnosing the progression of ocular and systemic diseases in clinical studies, with wide applications in early clinical screening and diagnosis. However, due to the nonuniform illumination and imbalanced intensity caused by various reasons, the quality of fundus images is often severely weakened, brings challenges for automated screening, analysis, and diagnosis of diseases. To resolve this problem, we developed strongly constrained generative adversarial networks (SCGAN). The results demonstrate that the quality of various datasets were more significantly enhanced based on SCGAN, simultaneously more effectively retaining tissue and vascular information under various experimental conditions. Furthermore, the clinical effectiveness and robustness of this model were validated by showing its improved ability in vascular segmentation as well as disease diagnosis. Our study provides a new comprehensive approach for FP and also possesses the potential capacity to advance artificial intelligence-assisted ophthalmic examination.

眼底摄影(FP)是临床研究中诊断眼部和全身疾病进展的重要技术,在临床早期筛查和诊断中有着广泛的应用。然而,由于各种原因导致的光照不均匀和强度不平衡,眼底图像的质量往往被严重削弱,给疾病的自动筛查、分析和诊断带来了挑战。为了解决这一问题,我们开发了强约束生成对抗网络(SCGAN)。结果表明,基于 SCGAN,各种数据集的质量得到了更显著的提升,同时在各种实验条件下更有效地保留了组织和血管信息。此外,该模型在血管分割和疾病诊断方面的能力也得到了提高,从而验证了其临床有效性和鲁棒性。我们的研究为 FP 提供了一种新的综合方法,并具有推动人工智能辅助眼科检查的潜在能力。
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引用次数: 0
Subpixel motion artifacts correction and motion estimation for 3D-OCT 用于 3D-OCT 的亚像素运动伪影校正和运动估算。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-02 DOI: 10.1002/jbio.202400104
Xiao Zhang, Haozhe Zhong, Sainan Wang, Bin He, Liangqi Cao, Ming Li, Miaowen Jiang, Qin Li

A number of hardware-based and software-based strategies have been suggested to eliminate motion artifacts for improvement of 3D-optical coherence tomography (OCT) image quality. However, the hardware-based strategies have to employ additional hardware to record motion compensation information. Many software-based strategies have to need additional scanning for motion correction at the expense of longer acquisition time. To address this issue, we propose a motion artifacts correction and motion estimation method for OCT volumetric imaging of anterior segment, without requirements of additional hardware and redundant scanning. The motion correction effect with subpixel accuracy for in vivo 3D-OCT has been demonstrated in experiments. Moreover, the physiological information of imaging object, including respiratory curve and respiratory rate, has been experimentally extracted using the proposed method. The proposed method offers a powerful tool for scientific research and clinical diagnosis in ophthalmology and may be further extended for other biomedical volumetric imaging applications.

为了消除运动伪影,提高三维光学相干断层成像(OCT)图像质量,人们提出了许多基于硬件和软件的策略。然而,基于硬件的策略必须使用额外的硬件来记录运动补偿信息。许多基于软件的策略需要额外的扫描来进行运动校正,代价是需要更长的采集时间。为了解决这个问题,我们提出了一种运动伪影校正和运动估计方法,用于前段的 OCT 容积成像,无需额外的硬件和冗余扫描。实验证明,该方法对体内 3D-OCT 的运动校正效果达到了亚像素精度。此外,实验还利用所提出的方法提取了成像对象的生理信息,包括呼吸曲线和呼吸频率。所提出的方法为眼科学的科学研究和临床诊断提供了强有力的工具,并可进一步扩展到其他生物医学容积成像应用中。
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引用次数: 0
Stitching method for panoramic nail fold images based on capillary contour enhancement 基于毛细血管轮廓增强的指甲褶皱全景图像拼接方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-02 DOI: 10.1002/jbio.202400105
Jianan Lin, Hao Yin, Yanxiong Wu, Jiaxiong Luo, Qianyao Ye, Bin Zhou, Mugui Xie, Cong Ye, Junzhao Liang, Xiaosong Li, Wei Bin, Zhimin Yang

Nail fold capillaroscopy is an important means of monitoring human health. Panoramic nail fold images improve the efficiency and accuracy of examinations. However, the acquisition of panoramic nail fold images is seldom studied and the problem manifests of few matching feature points when image stitching is used for such images. Therefore, this paper presents a method for panoramic nail fold image stitching based on vascular contour enhancement, which first solves the problem of few matching feature points by pre-processing the image with contrast-constrained adaptive histogram equalization (CLAHE), bilateral filtering (BF), and sharpening algorithms. The panoramic images of the nail fold blood vessels are then successfully stitched using the fast robust feature (SURF), fast library of approximate nearest neighbors (FLANN) and random sample agreement (RANSAC) algorithms. The experimental results show that the panoramic image stitched by this paper's algorithm has a field of view width of 7.43 mm, which improves the efficiency and accuracy of diagnosis.

甲襞毛细血管镜检查是监测人体健康的重要手段。全景甲襞图像可提高检查的效率和准确性。然而,对全景甲襞图像的采集研究较少,而且在对这类图像进行图像拼接时,会出现匹配特征点较少的问题。因此,本文提出了一种基于血管轮廓增强的全景甲襞图像拼接方法,首先通过对比度约束自适应直方图均衡化(CLAHE)、双边滤波(BF)和锐化算法对图像进行预处理,解决匹配特征点少的问题。然后,利用快速鲁棒特征(SURF)、快速近似近邻库(FLANN)和随机样本协议(RANSAC)算法,成功地拼接了甲皱血管的全景图像。实验结果表明,采用本文算法拼接的全景图像视场宽度为 7.43 毫米,提高了诊断效率和准确性。
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引用次数: 0
Ovarian cancer identification technology based on deep learning and second harmonic generation imaging 基于深度学习和二次谐波成像的卵巢癌识别技术。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-02 DOI: 10.1002/jbio.202400200
Bingzi Kang, Siyu Chen, Guangxing Wang, Yuhang Huang, Han Wu, Jiajia He, Xiaolu Li, Gangqin Xi, Guizhu Wu, Shuangmu Zhuo

Ovarian cancer is among the most common gynecological cancers and the eighth leading cause of cancer-related deaths among women worldwide. Surgery is among the most important options for cancer treatment. During surgery, a biopsy is generally required to screen for lesions; however, traditional case examinations are time consuming and laborious and require extensive experience and knowledge from pathologists. Therefore, this study proposes a simple, fast, and label-free ovarian cancer diagnosis method that combines second harmonic generation (SHG) imaging and deep learning. Unstained fresh human ovarian tissues were subjected to SHG imaging and accurately characterized using the Pyramid Vision Transformer V2 (PVTv2) model. The results showed that the SHG imaged collagen fibers could quantify ovarian cancer. In addition, the PVTv2 model could accurately differentiate the 3240 SHG images obtained from our imaging collection into benign, normal, and malignant images, with a final accuracy of 98.4%. These results demonstrate the great potential of SHG imaging techniques combined with deep learning models for diagnosing the diseased ovarian tissues.

卵巢癌是最常见的妇科癌症之一,也是全球妇女因癌症死亡的第八大原因。手术是治疗癌症的最重要选择之一。在手术过程中,一般需要进行活组织检查以筛查病变;然而,传统的病例检查费时费力,而且需要病理学家具备丰富的经验和知识。因此,本研究提出了一种结合二次谐波发生(SHG)成像和深度学习的简单、快速、无标记的卵巢癌诊断方法。对未染色的新鲜人体卵巢组织进行SHG成像,并使用Pyramid Vision Transformer V2(PVTv2)模型对其进行精确表征。结果表明,SHG成像的胶原纤维可以量化卵巢癌。此外,PVTv2 模型还能准确地将从我们的影像库中获得的 3240 幅 SHG 图像区分为良性、正常和恶性图像,最终准确率达到 98.4%。这些结果表明,SHG 成像技术与深度学习模型相结合,在诊断患病卵巢组织方面具有巨大潜力。
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引用次数: 0
Mueller matrix polarimetry approach for noninvasive glucose sensing with absorbance and anisotropic parameters on fingertips 用穆勒矩阵极坐标法在指尖上测量吸光度和各向异性参数,实现无创葡萄糖传感。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-02 DOI: 10.1002/jbio.202400052
Po-Ling Huang, Yu-Lung Lo, Yu-Ren Chen, Chih-Yi Liu

A Mueller matrix polarimetry system at 532 nm wavelength is developed for noninvasive glucose sensing in turbid media such as human's fingertip. The system extracts mean absorbance and anisotropic properties, demonstrated numerically and experimentally with phantom glucose samples. It is found that mean absorbance (Ae), depolarization index (Δ), and linear dichroism (LD) show linear variation with glucose concentration 100–500 mg/dL. In addition, LightTools simulations indicate proportional scaling of scattering effects with Ae, Δ, and LD. Real-world tests on fingertip show a strong correlation between these properties and blood glucose levels with a mean absolute relative deviation (MARD) of 12.56% and a correlation coefficient (R2) of 0.875 in prediction by a neural network (NN) model, highlighting the advantages of Mueller matrix in extracting more parameters related to blood glucose.

开发了一种波长为 532 nm 的穆勒矩阵极坐标测量系统,用于在人体指尖等浑浊介质中进行无创葡萄糖检测。该系统提取了平均吸光度和各向异性特性,并用模型葡萄糖样品进行了数值和实验演示。研究发现,平均吸光度(A e $$ {A}_e $$)、去极化指数(Δ)和线性二色性(LD)随葡萄糖浓度 100-500 mg/dL 呈线性变化。此外,LightTools 模拟显示散射效应与 A e $$ {A}_e $$、Δ 和 LD 成比例。在指尖上进行的实际测试表明,这些特性与血糖水平之间具有很强的相关性,平均绝对相对偏差 (MARD) 为 12.56%,神经网络 (NN) 模型预测的相关系数 (R2) 为 0.875,这凸显了穆勒矩阵在提取更多血糖相关参数方面的优势。
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引用次数: 0
Deep learning classification of ex vivo human colon tissues using spectroscopic optical coherence tomography 利用光谱光学相干断层扫描对体内外人体结肠组织进行深度学习分类。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-02 DOI: 10.1002/jbio.202400082
Wesley Y. Kendall, Qinyi Tian, Shi Zhao, Seyedbabak Mirminachi, Erin O'Kane, Abel Joseph, Darin Dufault, David A. Miller, Chanjuan Shi, Jatin Roper, Adam Wax

Screening for colorectal cancer (CRC) with colonoscopy has improved patient outcomes; however, it remains the third leading cause of cancer-related mortality, novel strategies to improve screening are needed. Here, we propose an optical biopsy technique based on spectroscopic optical coherence tomography (OCT). Depth resolved OCT images are analyzed as a function of wavelength to measure optical tissue properties and used as input to machine learning algorithms. Previously, we used this approach to analyze mouse colon polyps. Here, we extend the approach to examine human biopsied colonic epithelial tissue samples ex vivo. Optical properties are used as input to a novel deep learning architecture, producing accuracy of up to 97.9% in discriminating tissue type. SOCT parameters are used to create false colored en face OCT images and deep learning classifications are used to enable visual classification by tissue type. This study advances SOCT toward clinical utility for analysis of colonic epithelium.

使用结肠镜筛查结肠直肠癌(CRC)改善了患者的预后;然而,它仍然是癌症相关死亡率的第三大原因,因此需要新的策略来改善筛查。在此,我们提出了一种基于光谱光学相干断层扫描(OCT)的光学活检技术。深度分辨 OCT 图像通过分析波长函数来测量光学组织特性,并将其作为机器学习算法的输入。此前,我们曾用这种方法分析了小鼠结肠息肉。在这里,我们将这种方法扩展到检查活检的人体结肠上皮组织样本。光学特性被用作新型深度学习架构的输入,在区分组织类型方面的准确率高达 97.9%。SOCT 参数用于创建假彩色正视 OCT 图像,深度学习分类用于按组织类型进行视觉分类。这项研究推动了 SOCT 在分析结肠上皮方面的临床应用。
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引用次数: 0
期刊
Journal of Biophotonics
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