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Comparing Imaging Depth of Intravital Lung Imaging Using Perfluorocarbon-Based Liquid Ventilation With Tissue Clearing for Deep-Tissue Imaging 全氟化碳液体通气与组织清除术肺内成像深度比较
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-03 DOI: 10.1002/jbio.202500145
Pascal Detampel, Wolf Heusermann, Katarzyna M. Wojcik, Bryan G. Yipp, Matthias Amrein

Intravital lung imaging has been employed to study physiological and pathophysiological processes related to nanoparticle deposition in the alveolar lung, particularly in the context of air pollution and drug delivery. However, optical imaging depth is limited, often attributed to the refractive index (RI) mismatch at the alveolar air-tissue interface. To investigate this, we evaluated two complementary strategies. First, we demonstrated that eliminating the RI mismatch via partial liquid ventilation with oxygenated perfluorocarbon (PFC) did not enhance the imaging depth. A second approach, utilizing ex vivo optical tissue clearing (with RI matching), was only successful in improving imaging penetration depth if it included removal of scattering lipids such as pulmonary surfactant. Nevertheless, partial liquid ventilation with PFC in vivo enabled the homogeneous delivery of nanoparticles to the alveoli, allowing real-time observation of their interactions with lung epithelium. This finding opens new avenues for studying inhaled particulates and optimizing inhalation-based drug delivery.

活体肺成像已被用于研究与肺泡中纳米颗粒沉积相关的生理和病理生理过程,特别是在空气污染和药物输送的背景下。然而,光学成像深度有限,通常归因于肺泡空气-组织界面的折射率(RI)不匹配。为了研究这一点,我们评估了两种互补的策略。首先,我们证明通过含氧全氟碳(PFC)部分液体通气消除RI错配并不能增强成像深度。第二种方法是利用离体光学组织清除(与RI匹配),只有当它包括去除散射脂质(如肺表面活性剂)时,才能成功提高成像穿透深度。然而,体内PFC部分液体通气使得纳米颗粒均匀地递送到肺泡,从而可以实时观察它们与肺上皮的相互作用。这一发现为研究吸入微粒和优化吸入给药开辟了新的途径。
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引用次数: 0
Precise Identification of Gastric Cancer Pathological Differentiation Based on Hyperspectral Imaging and Lightweight Deep Learning Models 基于高光谱成像和轻量级深度学习模型的胃癌病理分化精确识别。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-03 DOI: 10.1002/jbio.202500242
Yutao Ma, Ruoyu Zhou, Zhengshuai Jiang, Chongxuan Tian, Rui Meng, Shuyan Zhang, Wei Li, Hongbo Ren

Accurate classification of gastric cancer differentiation is crucial for prognosis and treatment decisions. In this study, we propose a lightweight deep learning model—Improved Deep Residual Network (IDRN)—combined with hyperspectral imaging (HSI) to achieve precise identification of gastric cancer tissues. The model incorporates spectral preprocessing, dimensionality reduction, and a residual CNN with attention mechanisms to enhance feature extraction while maintaining efficiency. Comparative experiments with SVM, ResNet50, and ViT models show that IDRN achieves superior performance, particularly in identifying poorly differentiated tissues. Our approach provides a promising tool for computer-aided diagnosis and offers potential for clinical translation.

胃癌的准确分类对预后和治疗决策至关重要。在这项研究中,我们提出了一种轻量级的深度学习模型-改进的深度残差网络(IDRN)-结合高光谱成像(HSI)来实现胃癌组织的精确识别。该模型结合了光谱预处理、降维和带有注意机制的残差CNN,在保持效率的同时增强了特征提取。与SVM、ResNet50和ViT模型的对比实验表明,IDRN在识别低分化组织方面取得了更好的性能。我们的方法为计算机辅助诊断提供了一个有前途的工具,并提供了临床转化的潜力。
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引用次数: 0
Effects of Photobiomodulation on Orofacial Function and Electromyography in Children and Adolescents With Down Syndrome: A Preliminary Case Series 光生物调节对唐氏综合症儿童和青少年口面部功能和肌电图的影响:初步病例系列。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-03 DOI: 10.1002/jbio.202500294
Monise Mendes Rocha, Rafael Zaratin Beltramin, Fabiano Politti, Raquel Agnelli Mesquita-Ferrari, Sandra Gouveia Spínola, Amanda Rafaelly Honório Mandetta, Kristianne Porta Santos Fernandes, Ana Paula Taboada Sobral, Cinthya Cosme Gutierrez Duran, Lara Jansiski Motta, Sandra Kalil Bussadori

Introduction

Down syndrome (DS) causes motor and cognitive impairments, including hypotonia that compromises orofacial functions.

Objective

To report the effects of LED photobiomodulation (PBM) on masticatory muscle stability and orofacial function in children and adolescents with DS.

Methods

Five individuals with DS underwent three PBM sessions. Orofacial function was assessed using the NOT-S protocol and electromyography measured masseter and temporalis muscle activity.

Results

Electromyography showed greater muscle stability, reduced variability in electrical signals, and more balanced chewing forces. The NOT-S indicated improvements in nasal breathing and salivation control. However, discrepancies were observed between clinical findings and questionnaire responses, mainly in chewing function.

Conclusion

PBM with red LED may represent a promising complementary approach for supporting orofacial function and muscle stability in children and adolescents with DS. However, these preliminary observations require confirmation through future studies with larger, more homogeneous samples and long-term follow-up.

唐氏综合症(DS)导致运动和认知障碍,包括损害口腔面部功能的张力低下。目的:报道LED光生物调节(PBM)对儿童和青少年退行性椎体滑移患者咀嚼肌稳定性和口面部功能的影响。方法:5例DS患者接受了3次PBM治疗。采用NOT-S方案评估口面部功能,肌电图测量咬肌和颞肌活动。结果:肌电图显示肌肉更稳定,电信号变异性减少,咀嚼力更平衡。NOT-S表明鼻呼吸和唾液控制有所改善。然而,临床结果与问卷调查结果之间存在差异,主要是在咀嚼功能方面。结论:PBM与红色LED可能是支持儿童和青少年退行性椎体滑移患者口面部功能和肌肉稳定性的一种有希望的补充方法。然而,这些初步观察结果需要通过未来更大、更均匀的样本和长期随访的研究来证实。
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引用次数: 0
Non-Invasive Study of Bacteria Mobility by Lithium Niobate Crystal-Based Light-Induced Photovoltaic Tweezers 铌酸锂晶体光致光伏镊子对细菌迁移的无创研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-03 DOI: 10.1002/jbio.202500235
Lusine Tsarukyan, Anahit Badalyan, Michael Schwab, Kerstin Bellmann, Tigran Galstian, André Marette, Rafael Drampyan

We report the results of an experimental study of the movement and trapping of Gram-negative Escherichia coli (E. coli) bacteria in broth suspensions, under photovoltaic fields generated by an optical Bessel beam illumination of the surface of a lithium niobate crystal (photovoltaic tweezers). The study was performed using a phase-sensitive transmission microscope. Experiments showed that the direct electrical interactions are suppressed due to the screening of the negative charge of bacteria by Na+ counterions present in broth media because of the dissociation of NaCl in the water. The immobilization and trapping of ~95% of bacteria in the area of the recorded hologram (~2 mm2) require ~40 min. The velocity map of bacteria movement in the photovoltaic lattice is constructed. The formation and destruction of bacterial chains are also observed and discussed. The proposed method is a non-invasive microscopy technique with inserted chip-scale photovoltaic tweezers.

我们报道了一项实验研究的结果,在由光学贝塞尔光束照射铌酸锂晶体表面(光伏镊子)产生的光伏场下,在肉汤悬浮液中革兰氏阴性大肠杆菌(E. coli)细菌的运动和捕获。本研究采用相敏透射显微镜进行。实验表明,由于NaCl在水中的解离作用,肉汤介质中存在的Na+反离子对细菌的负电荷进行筛选,从而抑制了直接电相互作用。在记录的全息图面积(~2 mm2)内,~95%的细菌的固定和捕获需要~40分钟。构建了细菌在光伏晶格中的运动速度图。还观察和讨论了细菌链的形成和破坏。所提出的方法是一种插入芯片级光伏镊子的非侵入性显微镜技术。
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引用次数: 0
Optical Coherence Tomography and Angiography Image Enhancement Using Optical Clearing Agent Tartrazine 光学相干断层扫描和血管造影图像增强使用光学清除剂酒黄石。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-09-01 DOI: 10.1002/jbio.202500297
Yilin Liang, Xiaochen Meng, Chongyang Wang, Jiawei Ma, Xuanye Zhang, Fan Fan, Jiang Zhu

Optical coherence tomography (OCT) provides high-resolution, non-invasive visualization of biological tissues, enabling structural imaging and the visualization of microvascular networks. However, tissue scattering remains a significant limitation for achieving deeper imaging penetration and improved image quality. Optical clearing agents help minimize this scattering, enhancing OCT imaging capabilities. This study investigates the optical clearing effects of tartrazine, a commonly used food dye, to improve OCT and OCT angiography imaging. In ex vivo chicken breast, tartrazine solution demonstrated enhanced penetration depth and reversible optical clearing. In vivo mouse skin was evaluated using parameters such as extinction coefficient, signal-to-noise ratio, contrast-to-noise ratio, and vessel density. The results revealed substantial reductions in light scattering, improved imaging penetration, and enhanced visualization of vascular networks after applying tartrazine solution.

光学相干断层扫描(OCT)提供高分辨率、非侵入性的生物组织可视化,使结构成像和微血管网络可视化成为可能。然而,组织散射仍然是实现更深的成像穿透和提高图像质量的重大限制。光学清除剂有助于减少这种散射,增强OCT成像能力。本研究探讨了一种常用的食用染料酒黄石对改善OCT和OCT血管造影成像的光学清除作用。在离体鸡胸肉中,酒黄石溶液显示出增强的穿透深度和可逆的光学清除。使用消光系数、信噪比、对比噪声比和血管密度等参数对活体小鼠皮肤进行评估。结果显示,应用酒黄石溶液后,光散射显著减少,成像穿透性提高,血管网络的可视化增强。
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引用次数: 0
Photonics Detection of Molecular-Specific Spatial Structural Alterations of Cells due to Chronic Alcoholism and Probiotics Treatments in Colon Cancer 结肠癌慢性酒精中毒和益生菌治疗引起的细胞分子特异性空间结构改变的光子检测。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-28 DOI: 10.1002/jbio.202500221
Ishmael Apachigawo, Pradeep K. Shukla, Dhruvil Solanki, Santanu Maity, Radhakrishna Rao, Prabhakar Pradhan

Photonics/light localization techniques are essential in understanding the structural changes in biological cells/tissues at the nano- to sub-micron scale. It is now known that structural alterations begin at the nanoscale, marking the onset of cancer progression. This photonics study examines the molecular-specific nano-structural alterations of chronic alcoholism and probiotic effects on colon cancer using a mouse model of colon cancer. We assessed alcohol-treated and azoxymethane (AOM) with dextran sulfate sodium (DSS)-induced colitis models, including ethanol (EtOH) and probiotic (L.casei) treatments separately and together. The confocal images were analyzed using the mesoscopic physics-based Inverse Participation Ratio (IPR) technique to quantify structural alterations at nano- to submicron scales. Significant enhancement of cancer progression was observed in the EtOH-treated group, and probiotic treatment with EtOH showed substantial reversal of these changes in colon cancer, underscoring the potential of the IPR technique in detecting and monitoring cancer progression.

光子学/光定位技术对于理解生物细胞/组织在纳米到亚微米尺度上的结构变化至关重要。现在我们知道,结构改变始于纳米级,标志着癌症进展的开始。本光子学研究利用结肠癌小鼠模型研究慢性酒精中毒和益生菌对结肠癌的分子特异性纳米结构改变。我们用葡聚糖硫酸钠(DSS)诱导的结肠炎模型评估了酒精处理和偶氮氧甲烷(AOM),包括乙醇(EtOH)和益生菌(L.casei)单独和共同处理。使用基于介观物理的逆参与比(IPR)技术对共聚焦图像进行分析,以量化纳米到亚微米尺度上的结构变化。在EtOH治疗组中观察到癌症进展的显著增强,而益生菌治疗EtOH在结肠癌中显示出这些变化的实质性逆转,强调了IPR技术在检测和监测癌症进展方面的潜力。
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引用次数: 0
Retinal Fluorescence Features in Alzheimer's Disease: In Vivo Study Using Synchronous Scan and Emission Mapping 阿尔茨海默病视网膜荧光特征:使用同步扫描和发射作图的体内研究。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-27 DOI: 10.1002/jbio.202500271
Sherif S. Mahmoud, Rehab A. Fouad, Eman M. Aly

Alzheimer's disease (AD) involves retinal changes that may serve as biomarkers, given the retina's connection to the brain via the visual cortex. Variability in AD research arises from methodological differences, patient diversity, and evolving hypotheses. This study explores AD progression and complexity using synchronous and emission map fluorescence spectroscopy of retinas from rats administered aluminum chloride for 3, 6, 9, and 12 weeks. Elevated retinal amyloid-beta (Aβ-40 and Aβ-42) levels suggest similar pathological changes as in the brain. In synchronous spectra, excessive or insufficient levels of structural proteins can enhance retinal dysfunction or disease, while emission map spectra revealed enhanced photosensitivity due to increased porphyrins over time (AD-6 to AD-12 weeks).

考虑到视网膜通过视觉皮层与大脑的联系,阿尔茨海默病(AD)涉及视网膜的变化,这种变化可能作为生物标志物。阿尔茨海默病研究的可变性源于方法差异、患者多样性和不断发展的假设。本研究利用同步和发射图荧光光谱研究了大鼠给予氯化铝3、6、9和12周后视网膜的AD进展和复杂性。视网膜β淀粉样蛋白(a - β-40和a - β-42)水平升高表明与大脑相似的病理改变。在同步光谱中,结构蛋白水平过高或不足可增强视网膜功能障碍或疾病,而发射图光谱显示,随着时间的推移(AD-6至AD-12周),卟啉增加导致光敏性增强。
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引用次数: 0
Hyperspectral Imaging for Distinguishing Granulomatous Mastitis From Normal Breast Tissue in Core Needle Biopsies 高光谱成像在核心穿刺活检中鉴别肉芽肿性乳腺炎与正常乳腺组织。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-27 DOI: 10.1002/jbio.202500240
Minmin Yu, Yukun Yin, Guangshang Zhong, Chanchan Zhu, Cuilei Wei, Mengqiu Zhang, Mengdi Zhang, Haiyue Lv, Xinqian Dong, Jingwei Li

This study explores the use of hyperspectral imaging (HSI) to distinguish granulomatous mastitis (GM) from normal breast tissue in core-needle biopsy specimens. High-resolution spectral data were captured from paraffin-embedded sections across the 400–1000 nm range. Following preprocessing, normalization, and principal component analysis, one-way analysis of variance revealed ten wavelengths with the greatest diagnostic power. Notably, hemoglobin absorption peaks and lipid–collagen signatures provided the strongest spectral discrimination between GM and healthy tissue. These results underscore HSI's promise as a rapid, real-time adjunct for preoperative and intraoperative evaluation of breast lesions.

本研究探讨了使用高光谱成像(HSI)来区分肉芽肿性乳腺炎(GM)和正常乳腺组织的核心针活检标本。从400-1000 nm范围内的石蜡包埋切片中捕获高分辨率光谱数据。经过预处理、归一化和主成分分析,单向方差分析揭示了十个具有最大诊断能力的波长。值得注意的是,血红蛋白吸收峰和脂质-胶原蛋白特征提供了转基因组织和健康组织之间最强的光谱区分。这些结果强调了HSI作为一种快速、实时的术前和术中乳腺病变评估辅助手段的前景。
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引用次数: 0
Prognostic Value of Tumor Infiltrating Lymphocytes in Luminal B Breast Cancer Based on Multiphoton Microscopy 基于多光子显微镜的B腔乳腺癌肿瘤浸润淋巴细胞的预后价值。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-26 DOI: 10.1002/jbio.202500281
Xi Chen, Deyong Kang, Zhonghua Han, Jianping Huang, Zhen Lu, Jiajia He, Zhijun Li, Yuxuan Luo, Xingfu Wang, Lianhuang Li, Xiahui Han, Jianxin Chen, Liqin Zheng, Junzhen Jiang

This study investigates the prognostic value of tumor-infiltrating lymphocytes (TILs) in luminal B breast cancer patients using multiphoton microscopy (MPM) and evaluates their association with 5-year disease-free survival (DFS). We obtained unlabeled MPM images from 213 patients, quantified the frequency of TILs, and assigned a TILs-score to each patient using ridge regression analysis. In addition, compared with single CLI-score model, the nomogram model, which integrated the TILs-score model with CLI-score model, further enhanced the predictive power for the luminal B subgroup. Specifically, the area under the curve (AUC) for 5-year DFS increased from 0.740 to 0.830 and hazard ratio (HR) increased from 5.31 to 7.24 in the training cohort; in the validation cohort, AUC increased from 0.716 to 0.822 and HR increased from 3.08 to 5.01. These findings suggest that the MPM-based TILs-score is a robust prognostic factor for luminal B breast cancer, potentially guiding more tailored treatment protocols.

本研究利用多光子显微镜(MPM)研究肿瘤浸润淋巴细胞(til)在B型乳腺癌患者中的预后价值,并评估其与5年无病生存率(DFS)的关系。我们从213例患者中获得了未标记的MPM图像,量化了TILs的频率,并使用脊回归分析为每位患者分配了TILs评分。此外,与单一的cli评分模型相比,将til -评分模型与cli评分模型相结合的nomogram模型进一步提高了对luminal B亚组的预测能力。其中,训练组5年DFS的曲线下面积(AUC)从0.740增加到0.830,风险比(HR)从5.31增加到7.24;在验证队列中,AUC从0.716增加到0.822,HR从3.08增加到5.01。这些发现表明,基于mpm的tils评分是B腔乳腺癌的一个强有力的预后因素,可能指导更有针对性的治疗方案。
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引用次数: 0
Optical Detection of the Spatial Structural Alteration in the Human Brain Tissues/Cells and DNA/Chromatin due to Parkinson's Disease 帕金森病引起的人脑组织/细胞和DNA/染色质空间结构改变的光学检测
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-25 DOI: 10.1002/jbio.202500114
Fatemah Alharthi, Dhruvil Solanki, Ishmael Apachigawo, Santanu Maity, Jianfeng Xiao, Mohammad Moshahid Khan, Prabhakar Pradhan

Parkinson's disease (PD) is one of the most common neurodegenerative disorders, highlighting the urgent need for early, reliable biomarkers. Structural disorder at the subcellular level, particularly in nuclear components such as DNA/chromatin, offers a promising diagnostic target. In this study, we applied two mesoscopic physics-based optical techniques—partial wave spectroscopy (PWS) and inverse participation ratio (IPR)—to quantify nanoscale structural alterations in postmortem human brain tissues and nuclei. Both PWS and IPR revealed a significant increase in structural disorder and mass density fluctuations in DNA/chromatin of PD samples. These abnormalities are potentially linked to the pathological aggregation of alpha-synuclein in the substantia nigra, a hallmark of PD-related neurodegeneration. Complementary histological analyses supported the optical findings, validating the presence of disrupted microarchitecture. Our results establish PWS and IPR as sensitive optical/photonics tools for detecting early nanoscale changes in PD, offering a novel path toward improved diagnosis and understanding of disease progression.

帕金森病(PD)是最常见的神经退行性疾病之一,迫切需要早期可靠的生物标志物。亚细胞水平的结构紊乱,特别是在核成分如DNA/染色质中,提供了一个有希望的诊断靶点。在这项研究中,我们应用了两种基于介观物理的光学技术-部分波光谱(PWS)和逆参与比(IPR)来量化死后人脑组织和细胞核的纳米级结构变化。PWS和IPR均显示PD样品的DNA/染色质结构紊乱和质量密度波动显著增加。这些异常可能与α -突触核蛋白在黑质中的病理聚集有关,这是pd相关神经变性的标志。补充组织学分析支持光学结果,证实了微结构破坏的存在。我们的研究结果建立了PWS和IPR作为检测PD早期纳米级变化的敏感光学/光子学工具,为改进诊断和了解疾病进展提供了新的途径。
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引用次数: 0
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Journal of Biophotonics
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