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Empirical Mode Decomposition and Grassmann Manifold-Based Cervical Cancer Detection 基于经验模态分解和Grassmann流形的宫颈癌检测。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-28 DOI: 10.1002/jbio.202400584
Sidharthenee Nayak, Bhaswati Singha Deo, Mayukha Pal, Prasanta K. Panigrahi, Asima Pradhan

Cervical cancer is a prevalent malignancy affecting the female reproductive system and is recognized as a prominent factor to female mortality on a global scale. Timely and precise detection of various stages of cervical cancer plays a crucial role in enhancing the chances of successful treatment and extending patient survival. Fluorescence spectroscopy stands out as a highly sensitive method for identifying biochemical alterations associated with cancer and numerous other pathological conditions. In our study, empirical mode decomposition (EMD) and Grassmann manifold (GM) learning are explored for reliable cancer detection using fluorescence spectral signals collected from 110 subjects representing various categories of the human cervix. Initially, EMD is used to decompose the signal into several multi-feature intrinsic mode functions (IMFs) on a spectral scale. Each IMF demonstrates uniqueness by capturing the inherent frequency characteristics within the signal, thus facilitating the extraction of signal features. The GM representation of IMFs is employed for investigating the non-linear subspace structure within spectral signals, which is subsequently followed by a low-rank representation to transform and analyze the spectral signals. The GM allows for the extraction of relevant information, reduction of dimensionality, and exploration of complex relationships within data, ultimately contributing to improved diagnosis. Mutual information is further used for feature selection to reduce the number of features and hence the computational cost. When the selected features were employed for classification, the Random Forest (RF) classifier attained a high five-fold validation accuracy of 99% and exhibited a minimal standard deviation of 0.02. Other state-of-the-art machine learning classifiers were also used and compared with the RF model.

子宫颈癌是一种影响女性生殖系统的普遍恶性肿瘤,被认为是全球范围内女性死亡的一个重要因素。及时准确地发现子宫颈癌的各个阶段,对提高成功治疗的机会和延长患者的生存期至关重要。荧光光谱作为一种高度敏感的方法,用于识别与癌症和许多其他病理状况相关的生化变化。在我们的研究中,经验模式分解(EMD)和格拉斯曼流形(GM)学习探索了可靠的癌症检测,使用从110个代表不同类别的人类子宫颈受试者中收集的荧光光谱信号。首先,利用EMD将信号在谱尺度上分解为多个多特征的内禀模态函数(imf)。每个IMF通过捕捉信号内固有的频率特征来展示其独特性,从而便于提取信号特征。该方法首先利用imf的GM表示来研究谱信号的非线性子空间结构,然后利用低秩表示对谱信号进行变换和分析。GM允许提取相关信息、降维和探索数据中的复杂关系,最终有助于改进诊断。互信息进一步用于特征选择,以减少特征的数量,从而减少计算成本。当选择的特征被用于分类时,随机森林(RF)分类器获得了高达99%的五倍验证精度,并表现出最小的标准偏差0.02。其他最先进的机器学习分类器也被使用,并与RF模型进行比较。
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引用次数: 0
Optical Method for the Detection of Viral RNA Using an Optical Fiber Sensor 利用光纤传感器检测病毒RNA的光学方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-27 DOI: 10.1002/jbio.202500063
Patryk Sokołowski, Paweł Wityk, Joanna Raczak-Gutknecht, Wiktoria Brzezińska, Michał Sobaszek, Paweł Kalinowski, Sebastian Garcia-Galan, Małgorzata Szczerska

This study introduces a fiber-optic sensor functionalized with a sensing probe for SARS-CoV-2 RNA detection. The sensor employs a microsphere design at the sensor's tip, enhanced with a gold layer and oligonucleotide probes, to achieve high sensitivity and specificity. Utilizing optical interference, the system enables near real-time monitoring of viral RNA at concentrations as low as 10−12 M. While the sensor's sensitivity is lower than that of the RT-PCR, it excels in speed, portability, and scalability, making it suitable for point-of-care diagnostics, environmental monitoring, and large-scale screening. The integration of fiber-optic sensors with advanced analytical systems further enhances their utility in preventing virus transmission and contamination, highlighting their role in global efforts to combat infectious diseases.

本研究介绍了一种具有传感探针功能的光纤传感器,用于检测SARS-CoV-2 RNA。该传感器在传感器尖端采用微球设计,通过金层和寡核苷酸探针增强,以实现高灵敏度和特异性。利用光学干涉,该系统可以在低至10-12 M的浓度下对病毒RNA进行近实时监测。虽然传感器的灵敏度低于RT-PCR,但它在速度,便携性和可扩展性方面表现出色,使其适用于即时诊断,环境监测和大规模筛查。光纤传感器与先进分析系统的结合进一步增强了它们在预防病毒传播和污染方面的效用,突出了它们在全球抗击传染病努力中的作用。
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引用次数: 0
Design and Analysis of a Novel Nanoscale 2D Photonic Crystal Structure for Enhanced Multi-Disorder Biosensing 一种新型纳米二维光子晶体结构的设计与分析,用于增强多无序生物传感。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-27 DOI: 10.1002/jbio.202500130
K. Bhuvaneshwari, B. Elizabeth Caroline, J. Vidhya, K. Sagadevan

A 2D nano-scale multipurpose diamond-shaped ring resonator photonic crystal (PhC) biosensor with 15 × 11 circular silicon (Si) rods in a triangular lattice arrangement is proposed in this article. The distinct feature of the suggested biosensor is the design of a nano-cavity with two different rod radii. The designed biosensor is intended for identifying diabetic blood samples, malaria, and chikungunya virus. The proposed biosensor achieves a high quality factor (QF) of 8080, a high sensitivity (S) of 1108 nm/RIU with a low detection limit (DL) of 9.02 × 10−6 RIU, towards breast cancer analysis. The QF, S, and DL of the biosensor for the diabetic blood sample are 6963, 1087 nm/RIU, and 1.01 × 10−5 RIU respectively. The highest QF and sensitivity of the biosensor are 8561 and 1121.6 nm/RIU respectively, towards malarial detection. A high QF of 9129.4 and a high sensitivity of 1166.9 is achieved for infected plasma towards chikungunya virus detection.

提出了一种由15 × 11根三角形晶格排列的圆形硅棒构成的二维多用途金刚石环形谐振腔光子晶体生物传感器。所建议的生物传感器的显著特征是设计了具有两个不同棒半径的纳米腔。所设计的生物传感器用于识别糖尿病血液样本、疟疾和基孔肯雅病毒。该传感器对乳腺癌的检测质量因子(QF)为8080,灵敏度(S)为1108 nm/RIU,检出限(DL)为9.02 × 10-6 RIU。该传感器对糖尿病血液样品的QF、S和DL分别为6963、1087 nm/RIU和1.01 × 10-5 RIU。该传感器检测疟疾的QF和灵敏度分别为8561 nm/RIU和1121.6 nm/RIU。感染血浆检测基孔肯雅病毒的高QF为9129.4,高灵敏度为1166.9。
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引用次数: 0
Near-Infrared Spectroscopy Mapping for Uterine Cancer and Fibroid Detection 近红外光谱在子宫癌和子宫肌瘤检测中的应用。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-24 DOI: 10.1002/jbio.70062
Danyang Cheng, Haiqiu Yang, Arielle S. Joasil, Xiaowei Chen, Hanina Hibshoosh, Christine P. Hendon

Endometrial cancer and uterine leiomyomas (fibroid) are common uterine pathologies that require early diagnosis to improve a patient's symptoms and increase the success rate of interventional procedures. In this work, we report on near-infrared spectroscopy (NIRS) spectral features of uterine cancer and fibroids from 69 surgical specimens obtained from 24 patients following hysterectomies. Normal uterus, cancer, and fibroid tissue were identified by NIR spectral contrast parameters based on the differences in spectrum morphology. Using the significant optical features and spectral principal components, a classification model was able to classify uterus tissue with a prediction accuracy higher than 70%, identifying cancer specimens with 70% sensitivity and 93% specificity, and fibroid samples with 86% sensitivity and 83% specificity. These results demonstrated NIRS mapping has promise as a complementary method for gynecologic imaging.

子宫内膜癌和子宫平滑肌瘤(肌瘤)是常见的子宫疾病,需要早期诊断以改善患者的症状并提高介入手术的成功率。在这项工作中,我们报告了24例子宫切除术后69例子宫癌和肌瘤的近红外光谱特征。根据光谱形态的差异,采用近红外光谱对比参数对正常子宫、癌组织和肌瘤组织进行鉴别。利用显著的光学特征和光谱主成分,该分类模型对子宫组织的分类预测准确率高于70%,对癌症标本的识别灵敏度为70%,特异性为93%,对肌瘤标本的识别灵敏度为86%,特异性为83%。这些结果表明,近红外成像有希望作为妇科成像的补充方法。
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引用次数: 0
A Human Skin Diagnosis System Using Human Skin Reflective Spectrum Matching 基于人体皮肤反射光谱匹配的人体皮肤诊断系统。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-21 DOI: 10.1002/jbio.70064
Munsun Cho, Jiwon Shin, Minyoung Lee, Ye Jin Yang, Yaenyeong Choi, Heemuk Oh, Jun Bae Lee, Sung-Kyu Hong

Recently, the beauty market demands easier and more accurate skin diagnosis methods that can diagnose skin in a non-contact manner. In this study, we proposed a noncontact skin diagnosis method to evaluate personal skin information through mechanical matching of simulated optical skin reflection spectrum based on the Kubelka-Munk 2-layer model with actually measured skin reflection spectrum. For the validation of this skin information, correlation analysis between the spectrum matched skin information and the actually measured skin information was performed. Results confirmed that the spectrum matched skin information (melanin, hemoglobin, and dermis thickness) had a strong correlation with the actually measured skin information in terms of statistical significance.

最近,美容市场要求更容易和更准确的皮肤诊断方法,可以在非接触的方式诊断皮肤。在本研究中,我们提出了一种基于Kubelka-Munk 2层模型的非接触式皮肤诊断方法,通过机械匹配模拟光学皮肤反射光谱与实际测量的皮肤反射光谱来评估个人皮肤信息。为了验证该皮肤信息,对光谱匹配的皮肤信息与实际测量的皮肤信息进行相关性分析。结果证实,光谱匹配的皮肤信息(黑色素、血红蛋白和真皮层厚度)与实际测量的皮肤信息在统计意义上有很强的相关性。
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引用次数: 0
Label-Free and Intelligent Cell Death Recognition Toward Lung Cancer Chemotherapy 无标签和智能细胞死亡识别在肺癌化疗中的应用
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-20 DOI: 10.1002/jbio.202500127
Shubin Wei, Guoqing Luo, Zhaoyi Ye, Yueyun Weng, Liye Mei, Yan Jin, Yi Liu, Du Wang, Sheng Liu, Qing Geng, Cheng Lei

The lack of high-throughput, label-free, and intelligent recognition models for assessing cell death hinders the broad application of cell death analysis in chemotherapy for lung cancer. We propose an intelligent quantitative detection technique for cell deaths. Using high-throughput quantitative phase imaging flow cytometry to capture numerous label-free images and employing convolutional neural networks (CNN) to characterize the heterogeneity and quantitative detection of cell death. We revealed the heterogeneity of cell death through morphology features and achieved interpretability analysis of the CNN using clustering. Finally, the classification reliability of the CNN was validated by extracting features from classified cells. This method, compared with biochemical methods, showed a correlation of 0.92 and 0.91 with autophagy detection (Pearson and Cosine Similarity), and an average error of 12.52% with apoptosis detection. Our approach has the potential to become a valuable tool for studying cell death mechanisms and offers a new perspective for cancer treatment.

缺乏用于评估细胞死亡的高通量、无标签和智能识别模型阻碍了细胞死亡分析在肺癌化疗中的广泛应用。我们提出了一种智能的细胞死亡定量检测技术。使用高通量定量相成像流式细胞术捕获大量无标记图像,并使用卷积神经网络(CNN)表征细胞死亡的异质性和定量检测。我们通过形态学特征揭示了细胞死亡的异质性,并利用聚类实现了CNN的可解释性分析。最后,通过从分类细胞中提取特征来验证CNN的分类可靠性。与生化方法相比,该方法与自噬检测的相关系数分别为0.92和0.91 (Pearson and Cosine Similarity),与细胞凋亡检测的平均误差为12.52%。我们的方法有可能成为研究细胞死亡机制的宝贵工具,并为癌症治疗提供新的视角。
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引用次数: 0
Investigation of Helicobacter pylori Through C2H4 and CO2 Breath Markers Using Photoacoustic Spectroscopy 利用光声光谱法通过C2H4和CO2呼吸标记物研究幽门螺杆菌。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-19 DOI: 10.1002/jbio.202500140
Cristina Popa, Mioara Petrus, Ana Maria Bratu

Helicobacter pylori ( H. pylori ) is a bacterium that infects the stomach and can lead to conditions like peptic ulcers, chronic gastric inflammation, and stomach cancer. A key feature of H. pylori is urease, an enzyme that breaks down urea into ammonium carbonate. Various methods exist for diagnosing H. pylori infections, including breath tests. This study expands on previous research that focused on ammonia detection by introducing a novel approach using photoacoustic spectroscopy to measure ethylene and carbon dioxide levels in the breath of infected individuals. Our results show significant differences in gas concentrations between H. pylori -infected individuals and healthy controls. Ethylene concentrations were 113.64% higher, and carbon dioxide levels were 433.47% higher in infected participants, suggesting that both gases may serve as biomarkers for H. pylori detection.

幽门螺杆菌(h.p ylori)是一种感染胃部的细菌,可导致消化性溃疡、慢性胃炎和胃癌等疾病。幽门螺旋杆菌的一个关键特征是脲酶,一种将尿素分解成碳酸铵的酶。诊断幽门螺杆菌感染的方法多种多样,包括呼吸测试。这项研究扩展了以前的研究,重点是氨检测,引入了一种新的方法,利用光声光谱来测量受感染个体呼吸中的乙烯和二氧化碳水平。我们的结果显示幽门螺杆菌感染个体和健康对照之间的气体浓度有显著差异。在受感染的参与者中,乙烯浓度高出113.64%,二氧化碳水平高出433.47%,这表明这两种气体可以作为幽门螺杆菌检测的生物标志物。
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引用次数: 0
Comparative Analysis of Pulsed and Continuous Wave Modes in High-Intensity Laser Light Therapy: Implications for Deep Tissue Treatment 高强度激光治疗中脉冲和连续波模式的比较分析:对深层组织治疗的启示。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-19 DOI: 10.1002/jbio.202400164
Chironjeet Chaki, Luis De Taboada, Kwong Ming Tse

High-intensity laser at a wavelength of 1064 nm has gained significant attention in the field of therapeutic applications due to its potential to penetrate deeper. Continuous wave laser therapy, although effective, poses a challenge of elevated skin temperature. This study endeavors to explore the transition from continuous to pulsed laser, aiming to enhance light fluence in deep tissue while mitigating skin temperature rise. Investigating continuous versus pulsed wave in transdermal deep tissue light therapy, this research utilizes a high-intensity laser at 1064 nm to optimize fluence in deep muscle tissue of the human knee, minimizing absorption-driven skin temperature rise. Simulated parameters, including peak power (60 W), pulse width (2 ms), duty cycle (10%), frequency (50 Hz), as well as beam size of 20 mm, indicate that pulsed wave irradiation after 300 s achieved the lowest skin surface temperature (42.5°C) and the highest fluence (approximately 4.2 J/cm2).

波长为1064nm的高强度激光由于具有穿透深度的潜力,在治疗领域得到了广泛的关注。连续波激光治疗,虽然有效,提出了皮肤温度升高的挑战。本研究试图探索从连续激光到脉冲激光的过渡,旨在增强深层组织的光影响,同时缓解皮肤温度升高。研究了连续波与脉冲波在透皮深层组织光治疗中的作用,本研究利用1064 nm的高强度激光优化人体膝盖深层肌肉组织的影响,最大限度地减少吸收驱动的皮肤温升。模拟参数包括峰值功率(60 W)、脉冲宽度(2 ms)、占空比(10%)、频率(50 Hz)以及光束尺寸为20 mm,结果表明,脉冲波照射300 s后,皮肤表面温度最低(42.5°C),影响最大(约4.2 J/cm2)。
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引用次数: 0
A Novel Approach to Sequential Organ Failure Assessment (SOFA) Using Near-Infrared Spectroscopy in Extracorporeal Membrane Oxygenation (ECMO) Patients 使用近红外光谱对体外膜氧合(ECMO)患者进行顺序器官衰竭评估(SOFA)的新方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-16 DOI: 10.1002/jbio.202500032
Chia-Wei Sun, Chun-Yeh Wang, Yu-Han Zheng, Yi-Min Wang, Hsiao-Huang Chang

Extracorporeal membrane oxygenation (ECMO) is a medical device that provides temporary external circulation and respiratory support during heart-lung procedures, substituting for heart and lung function to alleviate their burden and allow more time for treatment. This study employs the sequential organ failure assessment (SOFA) to evaluate the severity of illness in ECMO patients and utilizes noninvasive near-infrared spectroscopy (NIRS) to monitor lower limb microcirculation. By extracting and selecting features, blood oxygen information is input into machine learning models for classification and regression analysis. The results indicated that the classification accuracy for disease severity reached 90% for veno-venous (VV-ECMO) and veno-arterial (VA-ECMO) patients, demonstrating the efficacy of combining NIRS with machine learning in clinically distinguishing disease severity. Additionally, the regression analysis yielded excellent performance. These findings underscore the effectiveness of NIRS in assessing disease severity among ECMO patients, offering valuable clinical guidance for optimizing ECMO settings, adjusting cardiovascular medication dosages, and predicting patient prognosis.

体外膜氧合(Extracorporeal membrane oxygenation, ECMO)是一种医疗设备,在心肺手术过程中提供暂时的外循环和呼吸支持,取代心肺功能,减轻其负担,为治疗留出更多时间。本研究采用序贯器官衰竭评估(SOFA)来评估ECMO患者的病情严重程度,并利用无创近红外光谱(NIRS)监测下肢微循环。通过提取和选择特征,将血氧信息输入到机器学习模型中进行分类和回归分析。结果表明,静脉-静脉(VV-ECMO)和静脉-动脉(VA-ECMO)患者疾病严重程度的分类准确率达到90%,证明了NIRS与机器学习相结合在临床上区分疾病严重程度的有效性。此外,回归分析产生了良好的性能。这些发现强调了NIRS在评估ECMO患者疾病严重程度方面的有效性,为优化ECMO设置、调整心血管药物剂量和预测患者预后提供了有价值的临床指导。
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引用次数: 0
Application of Upper Limb Multimodal Tasks Combined With fNIRS Technology in the Assessment of Mild Cognitive Impairment 上肢多模态任务联合近红外光谱技术在轻度认知障碍评估中的应用。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-14 DOI: 10.1002/jbio.202500020
Zhenda You, Ying Liu, Zengyong Li, Jixiao Liu, Jian Li

Mild cognitive impairment (MCI) is primarily characterized by a gradual decline in cognitive function, where early detection and intervention are crucial to preventing Alzheimer's disease progression. This study integrates upper limb multimodal tasks (ULMTs) with functional near-infrared spectroscopy (fNIRS) to assess cognitive and motor functions in MCI patients. Thirty-seven elderly participants were categorized into healthy control (HC) and MCI groups. The experiment consisted of resting state, numerical cognitive task (NCT), motor task (MT), and ULMT phases. fNIRS measured hemodynamic responses in the prefrontal and motor cortices, while an upper limb trainer recorded motor data. Results showed weaker cortical responses in the MCI group during rest and reduced motor cortex activation during NCT. Both groups displayed increased cortical activity during ULMT compared to NCT but reduced motor performance compared to MT. These findings demonstrate the potential of ULMTs combined with fNIRS for early MCI assessment and intervention.

轻度认知障碍(MCI)的主要特征是认知功能逐渐下降,早期发现和干预对于预防阿尔茨海默病的进展至关重要。本研究将上肢多模态任务(ulmt)与功能性近红外光谱(fNIRS)结合起来评估MCI患者的认知和运动功能。37名老年人被分为健康对照组(HC)和MCI组。实验分为静息状态、数字认知任务(NCT)、运动任务(MT)和终极任务(ULMT)四个阶段。fNIRS测量前额叶和运动皮层的血流动力学反应,而上肢训练器记录运动数据。结果显示,MCI组在休息时皮层反应较弱,NCT时运动皮层激活减少。与NCT相比,两组在ULMT期间都表现出皮层活动增加,但运动表现下降。这些发现表明,ULMT联合fNIRS在早期MCI评估和干预方面具有潜力。
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引用次数: 0
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Journal of Biophotonics
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