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Exploring Immediate Photon Effects From 635 nm Light on Mitochondrial Bioenergetics 探索635 nm光对线粒体生物能量学的即时光子效应。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-10 DOI: 10.1002/jbio.202500162
Natasha F. Mezzacappo, Natalia M. Inada, Edilene S. Siqueira-Santos, José Dirceu Vollet-Filho, Roger F. Castilho, Michael L. Denton, Vanderlei S. Bagnato

Visible light primarily targets mitochondria at the cellular level, but photon interaction mechanisms are still not fully understood. This study examined the in vitro impacts of 635 nm laser irradiation using mitochondria isolated from mouse liver. Mitochondria samples were irradiated for 330 s inside the respirometer chamber, with delivered powers ranging from 100 to 800 mW, corresponding to power densities ranging from 31.6 to 211.7 mW/cm2 inside the chamber. Analysis of real-time oxygen consumption showed an elevated proton leak during ATP synthase inhibition at 800 mW (211.7 mW/cm2, 69.9 J/cm2), suggesting enhanced permeability of the mitochondrial inner membrane. Under different experimental conditions, post-irradiation analysis revealed increased basal respiration with 400 mW (129.1 mW/cm2, 42.6 J/cm2) and 800 mW, along with increased susceptibility to Ca2+-triggered mitochondrial swelling. The investigation of mitochondrial bioenergetics demonstrated that red light induces transient and localized effects, highlighting the complexities of cellular and mitochondrial photostimulation mechanisms.

可见光主要针对细胞水平的线粒体,但光子相互作用机制仍未完全了解。研究了635 nm激光照射对小鼠肝脏线粒体的体外影响。线粒体样品在呼吸计腔内照射330 s,输出功率为100至800 mW,对应于腔内功率密度为31.6至211.7 mW/cm2。实时耗氧量分析显示,在ATP合酶抑制800 mW (211.7 mW/cm2, 69.9 J/cm2)时,质子泄漏增加,表明线粒体内膜通透性增强。在不同的实验条件下,辐照后分析显示,400 mW (129.1 mW/cm2, 42.6 J/cm2)和800 mW的辐射增加了基础呼吸,同时增加了对Ca2+触发的线粒体肿胀的敏感性。线粒体生物能量学的研究表明,红光诱导瞬时和局部效应,突出了细胞和线粒体光刺激机制的复杂性。
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引用次数: 0
In Vivo Bacterial Tracking Technology Based on Membrane Dye Labeling 基于膜染料标记的体内细菌跟踪技术。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-09 DOI: 10.1002/jbio.202500172
Liang Zhou, Jiahe Li, Xian He, Mingxiao Liu

Present methodologies for assessing antimicrobial effectiveness in living systems are heavily dependent on terminal detection approaches, including colony-forming unit enumeration and histological examination after animal euthanasia, for evaluating antimicrobial characteristics. Such conventional assessment techniques fail to monitor real-time alterations in infectious conditions throughout therapeutic interventions. This investigation introduces an innovative approach employing lipophilic near-infrared fluorophores for bacterial fluorescent tagging, integrated with IVIS (in vivo imaging system) technology, to accomplish continuous surveillance of bacterial infections in targeted infection models. Subsequently to localized administration of fluorescently marked bacteria, IVIS imaging demonstrated temporal variations in fluorescent signals within infection sites, which were subsequently employed to assess the in vivo performance of antimicrobial biomaterials. This methodology has been successfully verified using a rat tibial bone defect infection model. Experimental findings indicate that this technique provides immediate visualization of antimicrobial treatment effects and enables accurate quantitative evaluation, offering a methodological foundation for in vivo antimicrobial efficacy assessment.

目前评估生命系统抗菌有效性的方法严重依赖于终端检测方法,包括菌落形成单位枚举和动物安乐死后的组织学检查,以评估抗菌特性。这种传统的评估技术无法在整个治疗干预过程中监测传染病的实时变化。本研究介绍了一种利用亲脂性近红外荧光团进行细菌荧光标记的创新方法,结合IVIS(体内成像系统)技术,在靶向感染模型中实现对细菌感染的连续监测。随后,局部给药荧光标记的细菌,IVIS成像显示感染部位荧光信号的时间变化,随后用于评估抗菌生物材料的体内性能。该方法已成功地在大鼠胫骨缺损感染模型上得到验证。实验结果表明,该技术提供了抗菌治疗效果的即时可视化和准确的定量评估,为体内抗菌疗效评估提供了方法学基础。
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引用次数: 0
A Novel Quantitative Hemodynamic Evaluation Method of Laser Therapy for Scars Based on Diffuse Correlation Spectroscopy 一种基于漫射相关光谱的疤痕激光治疗定量血流动力学评价方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-09 DOI: 10.1002/jbio.202500178
Zhe Li, Yongjian Liu, Peng Tian, Chong Wang, Feng Tu, Chao Gao, Jiangtao Bai, Ruixin Fu, Jinchao Feng, Pengyu Liu, Kebin Jia

In this study, we proposed a hemodynamic evaluation method for scar laser therapy based on diffuse correlation spectroscopy (DCS) quantitatively. In vivo experiments were conducted to validate the feasibility of the proposed method by monitoring microvascular blood flow (BF) before and immediately after the laser therapy via a custom-built DCS device. Six participants were enrolled with two kinds of laser therapy treatments, one of which is aimed to induce vasoconstriction, while the other is intended to promote vasodilation. The scar BF reduced by 43.27% and the power spectral density (PSD) of that reduced by 72% for the vasoconstriction laser therapy treatment, while the scar BF increased 338.73% and PSD increased by 917% for the vasodilation laser therapy treatment. Finally, experimental results indicated that DCS enables reliable quantitative evaluation for laser therapy of scars. We are confident that DCS will assist clinicians in understanding the microvascular hemodynamic conditions of scars.

在本研究中,我们提出了一种基于漫射相关光谱(DCS)定量评价疤痕激光治疗血流动力学的方法。在体内进行实验,通过定制的DCS装置监测激光治疗前后的微血管血流(BF)来验证所提出方法的可行性。六名参与者接受了两种激光治疗,一种旨在诱导血管收缩,另一种旨在促进血管舒张。血管收缩激光治疗瘢痕BF降低43.27%,功率谱密度(PSD)降低72%,而血管扩张激光治疗瘢痕BF增加338.73%,PSD增加917%。最后,实验结果表明DCS能够对疤痕激光治疗进行可靠的定量评价。我们相信DCS将帮助临床医生了解疤痕的微血管血流动力学状况。
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引用次数: 0
Cellular Identification of Single-Base Mutations in KRAS Gene Fragments Based on Nonhomologous Spectroscopic Data Fusion Modeling 基于非同源光谱数据融合模型的KRAS基因片段单碱基突变的细胞鉴定。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-08 DOI: 10.1002/jbio.202500239
Chenchen Wang, Alimire Abudureyimu, Qin Zhang, Weiquan You, Dandan Li, Xiaofan Jia, Yating Zhang, Chengjie Chen, Rong Hu, Mengyao Wang, Shangyuan Feng, Pengfei Guo, Yang Chen

The sensitivity of KRAS gene mutation detection in colorectal cancer (CRC) can affect prognosis. This study established a nonhomologous spectroscopic data fusion method based on nuclear magnetic resonance (NMR) and laser tweezers Raman spectroscopy (LTRS), in order to analyze the metabolic characteristics of wild-type cells DKS-8 and HEK-3, and their respective mutant cells DLD-1 and HCT-116. Through multivariate statistical analysis, it was found that there were significant differences between mutant and wild-type cells. Four metabolites including taurine, glucose, phosphorylcholine, and tyrosine were screened as characteristic metabolites. Single-base KRAS mutations commonly alter metabolic pathways like d-glutamine and d-glutamate metabolisms, alanine, aspartate, and glutamate metabolism, and arginine biosynthesis. It is concluded that the combination of nonhomologous spectral data fusion would enhance reliability of the single source-derived characteristic markers. The proposed strategy will benefit congeneric researches in the biomedical field.

KRAS基因突变检测在结直肠癌(CRC)中的敏感性可影响预后。本研究建立了基于核磁共振(NMR)和激光镊子拉曼光谱(LTRS)的非同源光谱数据融合方法,以分析野生型细胞DKS-8和HEK-3及其各自的突变细胞DLD-1和HCT-116的代谢特性。通过多变量统计分析,发现突变型细胞与野生型细胞之间存在显著差异。筛选出牛磺酸、葡萄糖、磷胆碱、酪氨酸4种代谢物作为特征性代谢物。单碱基KRAS突变通常会改变代谢途径,如d-谷氨酰胺和d-谷氨酸代谢、丙氨酸、天冬氨酸和谷氨酸代谢以及精氨酸生物合成。结果表明,结合非同源光谱数据融合可以提高单源特征标记的可靠性。提出的策略将有利于生物医学领域的同类研究。
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引用次数: 0
Rapid and Noninvasive Detection of Brucellosis in Human Based on Serum Fluorescence Spectrum Combined With Machine Learning Algorithms 基于血清荧光光谱结合机器学习算法的人类布鲁氏菌病快速无创检测。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-03 DOI: 10.1002/jbio.202500100
Ziyi Fang, Quan Wang, Yiwei Gong, Xiangxiang Zheng, Wubulitalifu Dawuti, Shengke Xu, Hui Zhao, Guodong Lü

Brucellosis is a notable zoonotic disease caused by Brucella that is often overlooked. Diagnosis involves both clinical symptoms and serological examinations, which are accurate but time-consuming. Therefore, a simple and accurate method is needed. This study aims to assess the potential for diagnosing human brucellosis using serum fluorescence spectra in conjunction with principal component analysis–linear discriminant analysis (PCA-LDA), linear support vector machine (linear SVM), medium radial basis function support vector machine (RBF SVM), K-nearest neighbors (KNN), and decision tree (DT). The study of serum fluorescence spectra in brucellosis-infected compared to healthy revealed that patients with brucellosis had reduced peaks at 452, 624, and 688 nm and elevated peaks at 495 and 643 nm. SVM (linear/RBF) provides more accurate classification results than other algorithms. The method achieved an overall diagnostic accuracy of 89.0%. In conclusion, the serum fluorescence spectrum paired with the SVM (linear/RBF) algorithm is highly promising for human brucellosis detection.

布鲁氏菌病是由布鲁氏菌引起的一种重要的人畜共患疾病,经常被忽视。诊断包括临床症状和血清学检查,这些检查准确但耗时。因此,需要一种简单准确的方法。本研究旨在评估结合主成分分析-线性判别分析(PCA-LDA)、线性支持向量机(linear support vector machine, linear SVM)、中径向基函数支持向量机(medium radial basis function support vector machine, RBF SVM)、k近邻(KNN)和决策树(decision tree, DT)的血清荧光光谱诊断人类布鲁氏菌病的潜力。布鲁氏菌病感染者血清荧光光谱的研究显示,布鲁氏菌病患者在452,624和688 nm处的峰值降低,在495和643 nm处的峰值升高。SVM (linear/RBF)的分类结果比其他算法更准确。该方法的总体诊断准确率为89.0%。综上所述,血清荧光光谱与支持向量机(线性/RBF)算法配对,在人类布鲁氏菌病检测中具有很高的应用前景。
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引用次数: 0
Differential Diagnosis of Papillary Thyroid Carcinoma and Nodular Goiter With Papillary Hyperplasia Using Hyperspectral Imaging Technology 应用高光谱成像技术鉴别甲状腺乳头状癌和结节性甲状腺肿伴乳头状增生。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-02 DOI: 10.1002/jbio.202500200
Baohua Zhang, Chunlei Wang, Xiaoqing Yang, Tiefeng Sun, Mengqiu Zhang, Hao Chen, Lingquan Meng

Papillary thyroid carcinoma (PTC) and nodular goiter with papillary hyperplasia (NGPH) share similar histological features, complicating both preoperative and intraoperative diagnoses. We assessed hyperspectral imaging (HSI) combined with deep learning to differentiate PTC from NGPH. Forty-three paraffin-embedded PTC and 39 NGPH samples were imaged across 400–1000 nm, with reflectance calibration and Savitzky–Golay smoothing applied. Extracted spectral features were input into a one-dimensional convolutional neural network with a self-attention mechanism. HSI demonstrated sensitivity above 90% in the 500–600 nm and near-infrared regions for distinguishing PTC and NGPH. The model achieved an area under the ROC curve of 0.8635 and pixel-level classification accuracy of 87.07%, with both sensitivity and specificity at 87%. Spectral feature depth correlated significantly with histopathological parameters. These findings indicate that HSI combined with deep learning can accurately capture spectral differences between PTC and NGPH, supporting its potential for rapid intraoperative guidance and noninvasive preoperative screening.

甲状腺乳头状癌(PTC)和结节性甲状腺肿合并乳头状增生(NGPH)具有相似的组织学特征,术前和术中诊断都很复杂。我们评估了高光谱成像(HSI)结合深度学习来区分PTC和NGPH。43个石蜡包埋的PTC和39个NGPH样品在400-1000 nm范围内成像,采用反射率校准和Savitzky-Golay平滑。将提取的光谱特征输入到具有自注意机制的一维卷积神经网络中。HSI在500-600 nm和近红外区域对PTC和NGPH的识别灵敏度在90%以上。该模型的ROC曲线下面积为0.8635,像素级分类准确率为87.07%,灵敏度和特异性均为87%。光谱特征深度与组织病理学参数显著相关。这些发现表明,HSI结合深度学习可以准确捕获PTC和NGPH之间的频谱差异,支持其快速术中指导和无创术前筛查的潜力。
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引用次数: 0
Tartrazine for Optical Clearing of Tissues: Stability and Diffusion Issues 酒黄石用于组织的光学清除:稳定性和扩散问题。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-01 DOI: 10.1002/jbio.202500160
Ana R. Guerra, Luís R. Oliveira, Gonçalo O. Rodrigues, Maria R. Pinheiro, Maria I. Carvalho, Valery V. Tuchin, Luís M. Oliveira

Measuring the density of tartrazine (TZ) powder allowed to develop a protocol for fast preparation of aqueous solutions with a desired concentration. The stability time of these solutions decreases exponentially with the increase of TZ concentration: solutions with TZ concentrations below 25% remain stable for more than 24 h, while the solution with 60% TZ remains stable only for 35 min. To validate the developed protocol, muscle samples were immersed in the 40% TZ solution and, as expected, the tissue transparency increased smoothly and exponentially during the whole treatment of 30 min. The diffusion time of TZ in ex vivo skeletal muscle was quantitatively determined with high accuracy as τ TZ = 5.39 ± 0.49 min for sample thickness of 0.5 mm. By measuring the refractive index of TZ solutions during preparation, it will be easier to prepare such solutions in a fast manner for future research on tissue optical clearing.

通过测量酒黄石(TZ)粉末的密度,可以制定一种快速制备所需浓度水溶液的方案。这些溶液的稳定时间随着TZ浓度的增加呈指数递减,TZ浓度低于25%的溶液稳定时间超过24 h,而TZ浓度为60%的溶液稳定时间仅为35 min。为了验证所开发的方案,将肌肉样品浸入40% TZ溶液中,正如预期的那样,在整个30分钟的处理过程中,组织透明度呈指数级平滑增长。定量测定TZ在离体骨骼肌中的扩散时间,样品厚度为0.5 mm时,τTZ = 5.39±0.49 min,精度较高。通过在制备过程中测量TZ溶液的折射率,将更容易快速地制备出TZ溶液,为今后组织光学清除的研究提供依据。
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引用次数: 0
DeepLabV3+ With Convolutional Triplet Attention and Histopathology-Guided Voting for Hyperspectral Image Segmentation of Serous Ovarian Cancer 基于卷积三重关注和组织病理学引导投票的DeepLabV3+用于浆液性卵巢癌高光谱图像分割。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-30 DOI: 10.1002/jbio.202500142
Wenrui Tang, Lijun Wei, Zhenfeng Mo, Jiahao Wang, Xuan Zhang, Siqi Zhu, Lvfen Gao

Deep learning has been extensively applied in medical image analysis, providing healthcare professionals with more efficient and accurate diagnostic information. Among these advanced semantic segmentation models, the baseline DeepLabV3+ model is more adept at processing low-dimensional data such as RGB images, but its performance on high-dimensional data like hyperspectral images is suboptimal, limiting its generalization and discriminative capabilities. We propose a highly innovative hybrid architecture integrating a Convolutional Triplet Attention Module (CTAM) to capture cross-dimensional spectral-spatial dependencies and a Histopathology-Guided Voting Mechanism (HVM) to incorporate WHO diagnostic criteria. The results demonstrate that our model can accurately differentiate and localize low-grade and high-grade serous ovarian cancer tissues, with an accuracy of 92.7% and 90.2%, respectively. Furthermore, our performance exceeds the pathologist's consensus (85.4%) and surpasses state-of-the-art models (e.g., U-Net, PAN, FPN) by a significant margin of over 20% in LGSC classification, rigorously validating its scientific superiority.

深度学习已广泛应用于医学图像分析,为医疗专业人员提供更高效、准确的诊断信息。在这些高级语义分割模型中,基线DeepLabV3+模型更擅长处理RGB图像等低维数据,但在高光谱图像等高维数据上的性能不佳,限制了其泛化和判别能力。我们提出了一种高度创新的混合架构,集成了卷积三重关注模块(CTAM)来捕获跨维光谱空间依赖关系,以及组织病理学引导投票机制(HVM)来纳入世卫组织诊断标准。结果表明,该模型能够准确地区分和定位低级别和高级别浆液性卵巢癌组织,准确率分别为92.7%和90.2%。此外,我们的表现超过了病理学家的共识(85.4%),并且在LGSC分类中超过了最先进的模型(例如,U-Net, PAN, FPN)超过20%,严格验证了其科学优势。
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引用次数: 0
Unstained Blood Smear Analysis: A Review of Rule-Based, Machine Learning, and Deep Learning Techniques 未染血涂片分析:基于规则、机器学习和深度学习技术综述。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-30 DOI: 10.1002/jbio.202500121
Husnu Baris Baydargil, Thomas Bocklitz

Blood cells are central to oxygen transport, immune defense, and hemostasis. Their number and morphology act as sensitive biomarkers, making accurate segmentation and classification essential for hematological diagnostics. Biophotonic techniques now provide label-free imaging of unstained smears by exploiting intrinsic phase and scattering contrast, yet such images exhibit low optical signal and subtle morphological variation that exacerbate segmentation errors. Label-free modalities nevertheless preserve contrast where dyes fail, motivating renewed interest in unstained workflows. This review analyzes rule-based, machine-learning, and deep-learning approaches for segmenting and classifying label-free blood cells, highlighting performance gains, persistent challenges, and future directions for clinical adoption.

血细胞是氧运输、免疫防御和止血的中心。它们的数量和形态作为敏感的生物标志物,使准确的分割和分类对血液学诊断至关重要。生物光子技术现在通过利用本征相位和散射对比度提供未染色涂片的无标记成像,然而这种图像表现出低光信号和微妙的形态变化,从而加剧了分割错误。然而,无标签模式保留了染料失效的对比度,激发了对无染色工作流程的新兴趣。本文分析了基于规则、机器学习和深度学习的无标签血细胞分割和分类方法,强调了性能的提高、持续的挑战和临床应用的未来方向。
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引用次数: 0
Automated Classification of Rheumatoid Arthritis and Knee Synovitis From Hyperspectral Reflectance Data 基于高光谱反射数据的类风湿性关节炎和膝关节滑膜炎的自动分类。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-25 DOI: 10.1002/jbio.202500197
Shuwang Sun, Zhengyu Wang, Minmin Yu, Yihan Zhao, Yihui He, Lining Zhao

Accurate differentiation between rheumatoid arthritis (RA) and knee synovitis (KS) is essential for guiding optimal treatment, yet conventional histopathology often relies on subjective interpretation and offers limited insight into tissue biochemistry. Here, we introduce TransCNN, a novel multimodal framework that integrates hyperspectral imaging (HSI) with deep learning to achieve objective, high-precision diagnosis. Reflectance-mode HSI across the 400–1000 nm spectrum was performed on 95 synovial tissue specimens. Spectral data were denoised using Savitzky–Golay filtering and distilled via principal component analysis to enhance feature separability. TransCNN employs convolutional neural networks to capture intricate spatial morphology and Transformer layers to model global spectral correlations, producing a unified spectral-spatial representation. On an independent validation set, TransCNN achieved 91% accuracy, 89% F1-score, 90% recall, and 89% precision, substantially surpassing traditional approaches. These findings demonstrate that TransCNN provides a noninvasive, highly sensitive tool for pathological diagnosis, facilitating more reliable, data-driven decision-making in rheumatologic practice.

准确区分类风湿关节炎(RA)和膝关节滑膜炎(KS)对于指导最佳治疗至关重要,然而传统的组织病理学往往依赖于主观解释,并且对组织生物化学的了解有限。在这里,我们介绍了TransCNN,这是一种新的多模态框架,将高光谱成像(HSI)与深度学习相结合,以实现客观、高精度的诊断。在400-1000 nm光谱范围内对95个滑膜组织标本进行了反射模式HSI。光谱数据采用Savitzky-Golay滤波去噪,主成分分析提取,增强特征可分性。TransCNN采用卷积神经网络捕获复杂的空间形态和Transformer层来模拟全局光谱相关性,从而产生统一的光谱空间表示。在一个独立的验证集上,TransCNN达到了91%的准确率、89%的f1分数、90%的召回率和89%的精度,大大超过了传统方法。这些发现表明,TransCNN为病理诊断提供了一种无创、高灵敏度的工具,促进了风湿病实践中更可靠、数据驱动的决策。
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引用次数: 0
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Journal of Biophotonics
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