Pub Date : 2025-01-16Epub Date: 2024-11-27DOI: 10.1128/mra.01042-24
Hannah M Petronek, Matt T Kasson, Amy M Metheny, Cameron M Stauder, Brian Lovett, Shannon C Lynch, Jeff R Garnas, Lindsay R Kasson, Jason E Stajich
The fungal genus Neonectria contains many phytopathogenic species currently impacting forests and fruit trees worldwide. Despite their importance, a majority of Neonectria spp. lack sufficient genomic resources to resolve suspected cryptic species. Here, we report draft genomes and assemblies for Neonectria magnoliae NRRL 64651 and Neonectria punicea NRRL 64653.
{"title":"Draft genome sequences for <i>Neonectria magnoliae</i> and <i>Neonectria punicea,</i> canker pathogens of <i>Liriodendron tulipifera</i> and <i>Acer saccharum</i> in West Virginia.","authors":"Hannah M Petronek, Matt T Kasson, Amy M Metheny, Cameron M Stauder, Brian Lovett, Shannon C Lynch, Jeff R Garnas, Lindsay R Kasson, Jason E Stajich","doi":"10.1128/mra.01042-24","DOIUrl":"10.1128/mra.01042-24","url":null,"abstract":"<p><p>The fungal genus <i>Neonectria</i> contains many phytopathogenic species currently impacting forests and fruit trees worldwide. Despite their importance, a majority of <i>Neonectria</i> spp. lack sufficient genomic resources to resolve suspected cryptic species. Here, we report draft genomes and assemblies for <i>Neonectria magnoliae</i> NRRL 64651 and <i>Neonectria punicea</i> NRRL 64653.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0104224"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737037/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142730438","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16Epub Date: 2024-11-27DOI: 10.1128/mra.00930-24
Heo Ri Kim, Jae Su Kim, Se Jin Lee
Metarhizium anisopliae JEF-157, one of the biological control agents, was obtained from the Insect Microbial Biotechnology Laboratory at Jeonbuk National University. Herein, we report the whole genome of JEF-157, which has pathogenicity against Asian tiger mosquito larvae. The genome has 13,725 genes with a length of 17,719,696 bp.
{"title":"Whole-genome sequence of <i>Metarhizium anisopliae</i> JEF-157 against Asian tiger mosquito larvae (<i>Aedes albopictus</i>).","authors":"Heo Ri Kim, Jae Su Kim, Se Jin Lee","doi":"10.1128/mra.00930-24","DOIUrl":"10.1128/mra.00930-24","url":null,"abstract":"<p><p><i>Metarhizium anisopliae</i> JEF-157, one of the biological control agents, was obtained from the Insect Microbial Biotechnology Laboratory at Jeonbuk National University. Herein, we report the whole genome of JEF-157, which has pathogenicity against Asian tiger mosquito larvae. The genome has 13,725 genes with a length of 17,719,696 bp.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0093024"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737080/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142730443","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We present the results of the whole-genome sequencing of a Bacillus anthracis strain isolated from a permafrost sample collected in Yakutia, Russia. This strain was named YakM12. Phylogenetic analysis showed that YakM12 belongs to the canSNP group A.Br.001/002 and is genetically close to the Sterne vaccine strain.
{"title":"The genome sequence of a non-capsular natural <i>Bacillus anthracis</i> strain of A.Br.001/002 canSNP group isolated from permafrost in Yakutia, Russia.","authors":"Yulia Goncharova, Irina Bakhteeva, Raisa Mironova, Yuriy Skryabin, Angelina Kislichkina, Aleksandra Solomentseva, Vitalii Timofeev","doi":"10.1128/mra.01105-24","DOIUrl":"10.1128/mra.01105-24","url":null,"abstract":"<p><p>We present the results of the whole-genome sequencing of a <i>Bacillus anthracis</i> strain isolated from a permafrost sample collected in Yakutia, Russia. This strain was named YakM12. Phylogenetic analysis showed that YakM12 belongs to the canSNP group A.Br.001/002 and is genetically close to the Sterne vaccine strain.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0110524"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737082/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142751355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report the complete genome sequence of strain AEG42_29, a representative of the genus Paraconexibacter isolated from a temperate grassland soil. Its genome codes for several genes involved in stress response, defense, and virulence, which may help this bacterium cope with fluctuating conditions in the soil environment.
{"title":"Complete genome sequence of strain AEG42_29 (DSM 112329), a member of the genus <i>Paraconexibacter</i> isolated from soil.","authors":"Selma Vieira, Katharina Huber, Alicia Geppert, Jörg Overmann","doi":"10.1128/mra.01163-24","DOIUrl":"10.1128/mra.01163-24","url":null,"abstract":"<p><p>We report the complete genome sequence of strain AEG42_29, a representative of the genus <i>Paraconexibacter</i> isolated from a temperate grassland soil. Its genome codes for several genes involved in stress response, defense, and virulence, which may help this bacterium cope with fluctuating conditions in the soil environment.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0116324"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737030/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16Epub Date: 2024-12-10DOI: 10.1128/mra.00943-24
Gi Yoon Shin, Brian H Kvitko
We report the complete genomes of two Pantoea vagans strains, GM1 and GM2, isolated from garlic mustard plants. P. vagans strain GM1 was found to carry a HiVir pantaphos biosynthetic gene cluster, which causes onion necrosis.
{"title":"Complete genome sequences of <i>Pantoea vagans</i> strains GM1 and GM2, isolated from the leaves of garlic mustard.","authors":"Gi Yoon Shin, Brian H Kvitko","doi":"10.1128/mra.00943-24","DOIUrl":"10.1128/mra.00943-24","url":null,"abstract":"<p><p>We report the complete genomes of two <i>Pantoea vagans</i> strains, GM1 and GM2, isolated from garlic mustard plants. <i>P. vagans</i> strain GM1 was found to carry a HiVir pantaphos biosynthetic gene cluster, which causes onion necrosis.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0094324"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737166/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142801560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16Epub Date: 2024-11-27DOI: 10.1128/mra.00765-24
Pei Yi Peggy Tang, Aaron An Rong Loh, Dalong Hu, Lindsey Kane Deignan, Stephen Summers, Joao Paulo Andre Pereyra, Rebecca J Case
Two Roseibium spp. strains were isolated from skeletal macerates of the Singaporean coral Pachyseris speciosa at an ambient high temperature. We sequenced the genomes of SCP14 (JBDZYH000000000) and SCP15 (JBDZYI000000000), which revealed genomes containing genetic elements that play a role in coral health during thermal stress.
{"title":"Draft genomes of two <i>Roseibium</i> spp. isolated from the coral <i>Pachyseris speciosa</i> from a Singaporean reef.","authors":"Pei Yi Peggy Tang, Aaron An Rong Loh, Dalong Hu, Lindsey Kane Deignan, Stephen Summers, Joao Paulo Andre Pereyra, Rebecca J Case","doi":"10.1128/mra.00765-24","DOIUrl":"10.1128/mra.00765-24","url":null,"abstract":"<p><p>Two <i>Roseibium</i> spp. strains were isolated from skeletal macerates of the Singaporean coral <i>Pachyseris speciosa</i> at an ambient high temperature. We sequenced the genomes of SCP14 (JBDZYH000000000) and SCP15 (JBDZYI000000000), which revealed genomes containing genetic elements that play a role in coral health during thermal stress.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0076524"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737088/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142730439","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We present the genome sequence of Lacticaseibacillus rhamnosus isolated from human gut using Oxford Nanopore technology sequencing. The annotated draft genome of L. rhamnosus A20T1A showed the presence of probiotics and psychobiotics genomic traits relevant for gut colonization and human health.
{"title":"Genome sequence of potential psychobiotic <i>Lacticaseibacillus rhamnosus</i> A20T1A using long-read ONT technology.","authors":"Irene Franciosa, Davide Buzzanca, Luca Cocolin, Francesca De Filippis, Ilario Ferrocino","doi":"10.1128/mra.00685-24","DOIUrl":"10.1128/mra.00685-24","url":null,"abstract":"<p><p>We present the genome sequence of <i>Lacticaseibacillus rhamnosus</i> isolated from human gut using Oxford Nanopore technology sequencing. The annotated draft genome of <i>L. rhamnosus</i> A20T1A showed the presence of probiotics and psychobiotics genomic traits relevant for gut colonization and human health.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0068524"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737158/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142716497","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16Epub Date: 2024-11-27DOI: 10.1128/mra.00319-24
Hongyan Wang, Xin Wang, Siqi Huang, Shujing Yang, Hengyi Liao, Xuhao Wang, Huijuan Jin, Jingjing Wang, Xiuying Li, Jun Yan, Yi Yang
"Candidatus Dehalogenimonas loeffleri" strain W, isolated from estuarine sediments, can dechlorinate 1,2-dichloroethane under high salinity. Its genome consists of a circular 1,772,240-bp chromosome with a G + C content of 52.5% and encompasses 1,763 protein-coding sequences, including 28 genes encoding reductive dehalogenases.
从河口沉积物中分离出的 "Candidatus Dehalogenimonas loeffleri "菌株 W 能在高盐度条件下对 1,2-二氯乙烷进行脱氯。其基因组由 1,772,240 bp 的环状染色体组成,G+C 含量为 52.5%,包含 1,763 个蛋白质编码序列,其中 28 个基因编码还原脱卤酶。
{"title":"Complete genome sequence of \"<i>Candidatus</i> Dehalogenimonas loeffleri\" strain W, a highly salt-tolerant chlorinated alkane-dechlorinating bacterium isolated from estuarine sediments.","authors":"Hongyan Wang, Xin Wang, Siqi Huang, Shujing Yang, Hengyi Liao, Xuhao Wang, Huijuan Jin, Jingjing Wang, Xiuying Li, Jun Yan, Yi Yang","doi":"10.1128/mra.00319-24","DOIUrl":"10.1128/mra.00319-24","url":null,"abstract":"<p><p><i>\"Candidatus</i> Dehalogenimonas loeffleri\" strain W, isolated from estuarine sediments, can dechlorinate 1,2-dichloroethane under high salinity. Its genome consists of a circular 1,772,240-bp chromosome with a G + C content of 52.5% and encompasses 1,763 protein-coding sequences, including 28 genes encoding reductive dehalogenases.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0031924"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737167/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142730350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16Epub Date: 2024-11-27DOI: 10.1128/mra.00626-24
Ann M Hirsch, Ethan Humm, Liudmilla Rubbi, Giorgia Del Vecchio, Sung Min Ha, Matteo Pellegrini, Robert P Gunsalus
Mucilaginibacter species have been isolated from various environments, often in association with plants. Here, we report the complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4. The former is the first available for that species, and based on 16S sequence analysis, the latter strain is likely a new species.
{"title":"Complete genomes of <i>Mucilaginibacter sabulilitoris</i> SNA2 and <i>Mucilaginibacter</i> sp. cycad4: microbes with the potential for plant growth promotion.","authors":"Ann M Hirsch, Ethan Humm, Liudmilla Rubbi, Giorgia Del Vecchio, Sung Min Ha, Matteo Pellegrini, Robert P Gunsalus","doi":"10.1128/mra.00626-24","DOIUrl":"10.1128/mra.00626-24","url":null,"abstract":"<p><p><i>Mucilaginibacter</i> species have been isolated from various environments, often in association with plants. Here, we report the complete genomes of <i>Mucilaginibacter sabulilitoris</i> SNA2 and <i>Mucilaginibacter</i> sp. cycad4. The former is the first available for that species, and based on 16S sequence analysis, the latter strain is likely a new species.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0062624"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737089/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142730435","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16Epub Date: 2024-12-09DOI: 10.1128/mra.00911-24
Casiano H Choresca, Francis S Legario, Ma Elaine E De Leon, Mary Nia M Santos, Benjamin E Bumanlag, Christine Grace P Ca-As, Angelie A Gente, Paul Christian T Gloria
We report the draft genome of Streptococcus agalactiae serotype Ia strain FBC260, associated with hemorrhagic septicemia and massive cellular meningitis in cultured Nile tilapia from the Philippines. This genomic resource of S. agalactiae from the Philippines will provide valuable insights for disease management.
{"title":"Draft genome of <i>Streptococcus agalactiae</i> serotype Ia FBC260 causing hemorrhagic septicemia with massive cellular meningitis in cultured Nile tilapia from the Philippines.","authors":"Casiano H Choresca, Francis S Legario, Ma Elaine E De Leon, Mary Nia M Santos, Benjamin E Bumanlag, Christine Grace P Ca-As, Angelie A Gente, Paul Christian T Gloria","doi":"10.1128/mra.00911-24","DOIUrl":"10.1128/mra.00911-24","url":null,"abstract":"<p><p>We report the draft genome of <i>Streptococcus agalactiae</i> serotype Ia strain FBC260, associated with hemorrhagic septicemia and massive cellular meningitis in cultured Nile tilapia from the Philippines. This genomic resource of <i>S. agalactiae</i> from the Philippines will provide valuable insights for disease management.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0091124"},"PeriodicalIF":0.7,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11737160/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142801624","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}