We report the complete genome sequences of two antimony-oxidizing bacteria, Mesorhizobium sp. strain ANAO-SY3R2, comprising one chromosome (4.3 Mbp) and four circular plasmids, and Hydrogenophaga sp. strain ANAO-22, comprising one chromosome (5.8 Mbp) and two circular plasmids. These genome information extend our understanding of physiological versatility of antimony-transforming microorganisms.
We collected a urine specimen from a 20-year-old male, cultured it on Chrom-agar Enterococcus, identified it with VITEK2, and whole-genome sequenced it using the PacBio RSII. The genome was 3,111,621 nucleotides long with a GC% of 37.6%. It was identified as a human pathogen with a 92.3% probability and is available on NCBI with an accession ID of JBFBPS000000000.1.
We present the draft genomic sequences of 65 isolates of Campylobacter spp. (38 Campylobacter coli and 27 Campylobacter jejuni) isolated from table egg-layer chickens, which are not generally associated with human transmission. Up to this time, there are no publicly available genomic sequences of Campylobacter isolated from laying hens.
The phylotypr R package implements the popular naive Bayesian classification algorithm that is frequently used to classify 16S rRNA and other gene sequences to taxonomic lineages. A companion data package, phylotyprrefdata, also provides numerous versions of taxonomic databases from the Ribosomal Database Project, SILVA, and greengenes.
Algoriphagus is a heterotrophic bacterium commonly found in diverse marine environments. Here, we report the complete genome sequence of Algoriphagus halophilus strain SOCE 003, which is 5,154,101 bp long, encoding 5,524 annotated protein-coding genes, 39 tRNAs, and 8 rRNAs. This genome information will help us understand the ecology of Algoriphagus.
Microbacteriophage Godfather was collected from a soil sample in Stephenville, Texas. The 17,452-bp double-stranded genome contains 24 protein-coding genes. The genome shares >99% nucleotide sequence identity with cluster EE microbacteriophages Scamander, Danno, Kojax4, and Burgy.
Draft genomes of two phenanthrene-degrading bacterial isolates from oil sands process-affected water (OSPW) in Alberta, Canada were sequenced. Both isolates grew in close association on agar plates and were difficult to obtain axenically. They represent novel Pseudomonas chengduensis and Sphingobium sp. strains with genomes of 5.5 and 4.1 Mbases length, respectively.
We describe a complete genome sequence of Dorea formicigenerans JCM 31256. The genome consists of a single circular chromosome with a length of 3,090,452 base pairs and a GC content of 40.8%, and was predicted to contain 3,061 total genes, encoding for 2,907 proteins.
Psilocybe is a genus of mushroom-forming fungi with ecological, ethnomycological, and clinical importance due to psilocybin production by most species. We present five genomes that enable deeper discovery and analysis of the psilocybin gene cluster and increase taxonomic resolution within Psilocybe: Psilocybe semilanceata, Psilocybe gandalfiana nom. prov., Psilocybe caeruleorhiza, Psilocybe azurescens, and Psilocybe allenii.
We report the complete genome sequence of Pseudoxanthomonas koreensis TDY-1, an odor-reducing strain isolated from livestock wastewater on a pig farm. Its genome consists of a 2.97-Mb chromosome.
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