Kook-Il Han, Young Ho Nam, Hye Kyeong Kang, Hyun Mi Jin, Eui-Jin Kim
We report here the complete genome sequence of Pseudomonas brenneri strain JD2-26 isolated from a municipal solid waste landfill facility. The genome consists of a 6.32-Mbp chromosome and a plasmid having a total of 6,100 genes, including 5,914 coding sequences.
{"title":"Complete genome sequence of <i>Pseudomonas brenneri</i> strain JD2-26, a potential pollutant-reducing bacterium isolated from a municipal solid waste landfill facility.","authors":"Kook-Il Han, Young Ho Nam, Hye Kyeong Kang, Hyun Mi Jin, Eui-Jin Kim","doi":"10.1128/mra.01094-24","DOIUrl":"https://doi.org/10.1128/mra.01094-24","url":null,"abstract":"<p><p>We report here the complete genome sequence of <i>Pseudomonas brenneri</i> strain JD2-26 isolated from a municipal solid waste landfill facility. The genome consists of a 6.32-Mbp chromosome and a plasmid having a total of 6,100 genes, including 5,914 coding sequences.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0109424"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896051","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Catherine Badel, Enrico Bocconetti, Radi Khodr, Claire Husser, Michael Ryckelynck, Stéphane Vuilleumier
A complete genome sequence of Caballeronia sp. strain S22 capable of growing with fluoroacetate as the sole source of carbon and energy was obtained by PacBio technology. It consists of seven circular replicons totaling 9,367 kb, with a gene cluster involved in fluoroacetate utilization on its smallest 172 kb plasmid.
{"title":"Complete genome sequence of fluoroacetate-degrading <i>Caballeronia</i> sp. S22 strain (DSM 8341) as a reference resource for investigations of microbial defluorination.","authors":"Catherine Badel, Enrico Bocconetti, Radi Khodr, Claire Husser, Michael Ryckelynck, Stéphane Vuilleumier","doi":"10.1128/mra.00812-24","DOIUrl":"https://doi.org/10.1128/mra.00812-24","url":null,"abstract":"<p><p>A complete genome sequence of <i>Caballeronia</i> sp. strain S22 capable of growing with fluoroacetate as the sole source of carbon and energy was obtained by PacBio technology. It consists of seven circular replicons totaling 9,367 kb, with a gene cluster involved in fluoroacetate utilization on its smallest 172 kb plasmid.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0081224"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896052","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Egor A Vasyagin, Alexey V Beletsky, Elena V Ivanova, Maxim Yu Shalamitskiy, Andrey V Mardanov, Nikolai V Ravin
Schizosaccharomyces pombe is a non-Saccharomyces yeast that is widely used in winemaking due to its ability to ferment malic acid, thus improving organoleptic properties of wine. We report the draft genome sequence of S. pombe strain I-540, isolated from grape must in Russia.
{"title":"Draft genome sequences of <i>Schizosaccharomyces pombe</i> strain I-540 isolated from grape must.","authors":"Egor A Vasyagin, Alexey V Beletsky, Elena V Ivanova, Maxim Yu Shalamitskiy, Andrey V Mardanov, Nikolai V Ravin","doi":"10.1128/mra.01135-24","DOIUrl":"https://doi.org/10.1128/mra.01135-24","url":null,"abstract":"<p><p><i>Schizosaccharomyces pombe</i> is a non-Saccharomyces yeast that is widely used in winemaking due to its ability to ferment malic acid, thus improving organoleptic properties of wine. We report the draft genome sequence of <i>S. pombe</i> strain I-540, isolated from grape must in Russia.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0113524"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896056","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos
Tenacibaculum maritimum is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.
{"title":"First complete genome sequence of <i>Tenacibaculum maritimum</i> serotype O4, a rising threat in marine aquaculture.","authors":"M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos","doi":"10.1128/mra.01122-24","DOIUrl":"https://doi.org/10.1128/mra.01122-24","url":null,"abstract":"<p><p><i>Tenacibaculum maritimum</i> is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0112224"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Egor A Vasyagin, Alexey V Beletsky, Maxim Yu Shalamitskiy, Karina A Semenova, Nikolai V Ravin, Andrey V Mardanov
Kluyveromyces marxianus is a yeast widely used in the dairy industry and frequently isolated from vineyards and wineries. Its capacity to metabolize diverse sugars makes it highly promising for winemaking applications. We report the draft genome sequence of the K. marxianus strain U848.
{"title":"Draft genome sequences of <i>Kluyveromyces marxianus</i> strain U848 isolated from <i>Agave sisalana</i>.","authors":"Egor A Vasyagin, Alexey V Beletsky, Maxim Yu Shalamitskiy, Karina A Semenova, Nikolai V Ravin, Andrey V Mardanov","doi":"10.1128/mra.01173-24","DOIUrl":"https://doi.org/10.1128/mra.01173-24","url":null,"abstract":"<p><p><i>Kluyveromyces marxianus</i> is a yeast widely used in the dairy industry and frequently isolated from vineyards and wineries. Its capacity to metabolize diverse sugars makes it highly promising for winemaking applications. We report the draft genome sequence of the <i>K. marxianus</i> strain U848.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0117324"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Adrian Estrada-Graf, Hari Koneru, Jason Arnold, Sara Calhoun, Igor V Grigoriev, Zackary I Johnson
The microalga Nannochloropsis is an important organism for algae-based biocommodity production of food, feed, and fuel, among other products. Using PacBio Revio, we sequenced, assembled, and annotated a 26.41 Mbp Nannochloropsis oceanica C018 genome.
{"title":"Genome assembly and annotation of microalga <i>Nannochloropsis oceanica</i> C018.","authors":"Adrian Estrada-Graf, Hari Koneru, Jason Arnold, Sara Calhoun, Igor V Grigoriev, Zackary I Johnson","doi":"10.1128/mra.00883-24","DOIUrl":"https://doi.org/10.1128/mra.00883-24","url":null,"abstract":"<p><p>The microalga <i>Nannochloropsis</i> is an important organism for algae-based biocommodity production of food, feed, and fuel, among other products. Using PacBio Revio, we sequenced, assembled, and annotated a 26.41 Mbp <i>Nannochloropsis oceanica</i> C018 genome.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0088324"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dieter M Tourlousse, Kazutoshi Murotomi, Mayu Hamajima, Yuji Sekiguchi
We describe a complete genome sequence of Dorea formicigenerans JCM 31256. The genome consists of a single circular chromosome with a length of 3,090,452 base pairs and a GC content of 40.8%, and was predicted to contain 3,061 total genes, encoding for 2,907 proteins.
{"title":"Complete genome sequence of <i>Dorea formicigenerans</i> JCM 31256.","authors":"Dieter M Tourlousse, Kazutoshi Murotomi, Mayu Hamajima, Yuji Sekiguchi","doi":"10.1128/mra.01254-24","DOIUrl":"https://doi.org/10.1128/mra.01254-24","url":null,"abstract":"<p><p>We describe a complete genome sequence of <i>Dorea formicigenerans</i> JCM 31256. The genome consists of a single circular chromosome with a length of 3,090,452 base pairs and a GC content of 40.8%, and was predicted to contain 3,061 total genes, encoding for 2,907 proteins.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0125424"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ian M Bollinger, Harte Singer, Jordan Jacobs, Marshall Tyler, Kelsey Scott, Christopher S Pauli, Dusty Rose Miller, Caine Barlow, Alan Rockefeller, Jason C Slot, Victor Angel-Mosti
Psilocybe is a genus of mushroom-forming fungi with ecological, ethnomycological, and clinical importance due to psilocybin production by most species. We present five genomes that enable deeper discovery and analysis of the psilocybin gene cluster and increase taxonomic resolution within Psilocybe: Psilocybe semilanceata, Psilocybe gandalfiana nom. prov., Psilocybe caeruleorhiza, Psilocybe azurescens, and Psilocybe allenii.
{"title":"High-quality draft genomes of ecologically and geographically diverse <i>Psilocybe</i> species.","authors":"Ian M Bollinger, Harte Singer, Jordan Jacobs, Marshall Tyler, Kelsey Scott, Christopher S Pauli, Dusty Rose Miller, Caine Barlow, Alan Rockefeller, Jason C Slot, Victor Angel-Mosti","doi":"10.1128/mra.00250-24","DOIUrl":"https://doi.org/10.1128/mra.00250-24","url":null,"abstract":"<p><p><i>Psilocybe</i> is a genus of mushroom-forming fungi with ecological, ethnomycological, and clinical importance due to psilocybin production by most species. We present five genomes that enable deeper discovery and analysis of the psilocybin gene cluster and increase taxonomic resolution within <i>Psilocybe</i>: <i>Psilocybe semilanceata</i>, <i>Psilocybe gandalfiana</i> nom. prov., <i>Psilocybe caeruleorhiza</i>, <i>Psilocybe azurescens</i>, and <i>Psilocybe allenii</i>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0025024"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896059","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report the complete genome assembly of a hydroquinonesulfonate-assimilating bacterium, Delftia lacustris strain HQS1. This strain contains one circular chromosome (6,979,964 bp) and one circular plasmid (39,999 bp). The chromosomal sequence contained 6,359 coding sequences and a gene cluster involved in the degradation of gentisate, which is structurally similar to hydroquinonesulfonate.
{"title":"Complete genome sequence of hydroquinonesulfonate-assimilating bacterium, <i>Delftia lacustris</i> HQS1.","authors":"Masahiro Takeo, Seiwa Ohtaki, Hidehiro Ishizawa","doi":"10.1128/mra.00371-24","DOIUrl":"https://doi.org/10.1128/mra.00371-24","url":null,"abstract":"<p><p>We report the complete genome assembly of a hydroquinonesulfonate-assimilating bacterium, <i>Delftia lacustris</i> strain HQS1. This strain contains one circular chromosome (6,979,964 bp) and one circular plasmid (39,999 bp). The chromosomal sequence contained 6,359 coding sequences and a gene cluster involved in the degradation of gentisate, which is structurally similar to hydroquinonesulfonate.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0037124"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896053","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The pure culture of prokaryotes is essential to understanding their physiology. To facilitate research into better understanding the roles of individual bacteria in the gastric microbiome in chickens, we have established a culture collection of 1,240 isolates from fecal samples collected from healthy laying hens from across Canada.
{"title":"Culture collection containing 1,240 isolates from healthy Canadian laying hens.","authors":"Zhixuan Tiffany Feng, Jinha Suh, Jennifer Ronholm","doi":"10.1128/mra.01203-24","DOIUrl":"https://doi.org/10.1128/mra.01203-24","url":null,"abstract":"<p><p>The pure culture of prokaryotes is essential to understanding their physiology. To facilitate research into better understanding the roles of individual bacteria in the gastric microbiome in chickens, we have established a culture collection of 1,240 isolates from fecal samples collected from healthy laying hens from across Canada.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0120324"},"PeriodicalIF":0.7,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}