Grace Nkechinyere Ijoma, Henry Joseph Oduor Ogola, Thendo Mafuna
We present a draft genome of Schizophyllum sp. F4_1A, a basidiomycete isolated from decaying wood in Gauteng Province, South Africa, sequenced using the MGISEQ-2000RS platform. This draft genome will serve as a valuable genomic resource, enhancing our understanding of white rot fungi and facilitating future comparative genomic analyses.
{"title":"Draft genome of <i>Schizophyllum</i> sp. strain F4_1A, a novel white-rot fungus isolated in Gauteng Province, South Africa.","authors":"Grace Nkechinyere Ijoma, Henry Joseph Oduor Ogola, Thendo Mafuna","doi":"10.1128/mra.00830-24","DOIUrl":"10.1128/mra.00830-24","url":null,"abstract":"<p><p>We present a draft genome of <i>Schizophyllum</i> sp. F4_1A, a basidiomycete isolated from decaying wood in Gauteng Province, South Africa, sequenced using the MGISEQ-2000RS platform. This draft genome will serve as a valuable genomic resource, enhancing our understanding of white rot fungi and facilitating future comparative genomic analyses.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142546380","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report the draft genome sequence of Gloeocapsa sp. BRSZ isolated from Bo Khlueng hot spring in Thailand, comprising 42 contigs assembled at the scaffold level, totaling 6,084,403 bp, with 43.5% G + C content. It contains 5,456 putative protein-coding genes, including genes responsible for biosynthesis of mycosporine-like amino acids.
{"title":"Draft genome sequence of a cyanobacterium <i>Gloeocapsa</i> sp. BRSZ, isolated from Bo Khlueng hot spring in Ratchaburi, Thailand.","authors":"Taiki Aono, Sasiprapa Samsri, Rungaroon Waditee-Sirisattha, Hakuto Kageyama","doi":"10.1128/mra.00681-24","DOIUrl":"https://doi.org/10.1128/mra.00681-24","url":null,"abstract":"<p><p>We report the draft genome sequence of <i>Gloeocapsa</i> sp. BRSZ isolated from Bo Khlueng hot spring in Thailand, comprising 42 contigs assembled at the scaffold level, totaling 6,084,403 bp, with 43.5% G + C content. It contains 5,456 putative protein-coding genes, including genes responsible for biosynthesis of mycosporine-like amino acids.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study reveals the genomes of psittaciform chaphamaparvovirus 5 (PsChPV-5) and a beak and feather disease virus (BFDV), discovered in the fecal samples of cockatiels. The genomes of PsChPV-5 and BFDV are 4,366 and 2,009 base pairs long, respectively, each exhibiting the characteristic genomic structures of their respective genera.
{"title":"Genomic characterization of parvovirus and beak and feather disease virus in cockatiel (<i>Nymphicus hollandicus</i>).","authors":"Subir Sarker, Saranika Talukder, Md Safiul Alam Bhuiyan, Md Hakimul Haque","doi":"10.1128/mra.00820-24","DOIUrl":"https://doi.org/10.1128/mra.00820-24","url":null,"abstract":"<p><p>This study reveals the genomes of psittaciform chaphamaparvovirus 5 (PsChPV-5) and a beak and feather disease virus (BFDV), discovered in the fecal samples of cockatiels. The genomes of PsChPV-5 and BFDV are 4,366 and 2,009 base pairs long, respectively, each exhibiting the characteristic genomic structures of their respective genera.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522421","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Güel Dumann, Oliver Rohland, Mostafa Y Abdel-Glil, Rosalind J Allen, Michael Bauer, Anne Busch
We describe the genetic properties of two strains isolated from the elusive bile duct microbiome from solid organ transplant patients. Bacterial strains Enterococcus lactis (MS-STENT-08-E-001) and Klebsiella pneumoniae (MS-STENT-01-M-001) were isolated from the biofilms of bile duct catheters.
{"title":"Draft genomes of the bile duct microbiome strains <i>Klebsiella pneumoniae</i> and <i>Enterococcus lactis</i> isolated from bilioenteric drainages with biofilm-forming abilities.","authors":"Güel Dumann, Oliver Rohland, Mostafa Y Abdel-Glil, Rosalind J Allen, Michael Bauer, Anne Busch","doi":"10.1128/mra.00202-24","DOIUrl":"https://doi.org/10.1128/mra.00202-24","url":null,"abstract":"<p><p>We describe the genetic properties of two strains isolated from the elusive bile duct microbiome from solid organ transplant patients. Bacterial strains <i>Enterococcus lactis</i> (MS-STENT-08-E-001) and <i>Klebsiella pneumoniae</i> (MS-STENT-01-M-001) were isolated from the biofilms of bile duct catheters.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mircea Podar, Leah H Hochanadel, William G Alexander, Christopher W Schadt, Dale A Pelletier
Promicromonospora sp. strain Populi is an actinobacterium isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa. We completely sequenced its 5.2-Mbp chromosome using Oxford Nanopore long reads and predicted it to encode 4,685 proteins, 3 rRNA operons, and 54 tRNAs and noncoding RNAs.
{"title":"Complete genome sequence of <i>Promicromonospora</i> sp. strain Populi<i>,</i> an actinobacterium isolated from <i>Populus trichocarpa</i> rhizosphere.","authors":"Mircea Podar, Leah H Hochanadel, William G Alexander, Christopher W Schadt, Dale A Pelletier","doi":"10.1128/mra.00851-24","DOIUrl":"https://doi.org/10.1128/mra.00851-24","url":null,"abstract":"<p><p><i>Promicromonospora</i> sp. strain Populi is an actinobacterium isolated from the rhizosphere of a black cottonwood tree, <i>Populus trichocarpa</i>. We completely sequenced its 5.2-Mbp chromosome using Oxford Nanopore long reads and predicted it to encode 4,685 proteins, 3 rRNA operons, and 54 tRNAs and noncoding RNAs.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Here, we present the genome sequences of dengue viruses (DENV) isolated from adult patients in Thailand during 2016-2017: DENV2 (412749), DENV3 (416384), and DENV4 (416709). These sequences provide valuable genetic and evolutionary information for dengue research and antiviral development.
{"title":"Genome sequences of dengue virus serotypes 2, 3, and 4 isolated from adult patients in Thailand.","authors":"Adisak Songjaeng, Kwanrutai Chin-Inmanu, Phitchapha Proykhunthod, Ranyikar Poraha, Preeyanuch Sayboonruan, Dararat Prayongkul, Dumrong Mairiang, Yupin Suputtamongkol, Nasikarn Angkasekwinai, Nuntaya Punyadee, Panisadee Avirutnan","doi":"10.1128/mra.00522-24","DOIUrl":"https://doi.org/10.1128/mra.00522-24","url":null,"abstract":"<p><p>Here, we present the genome sequences of dengue viruses (DENV) isolated from adult patients in Thailand during 2016-2017: DENV2 (412749), DENV3 (416384), and DENV4 (416709). These sequences provide valuable genetic and evolutionary information for dengue research and antiviral development.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522420","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Christensenella minuta is one of the representative bacterial species of the human gut microbiome. We report the complete genome sequence of two strains, Christensenella minuta CIP 112228 and CIP 112229, isolated from two healthy volunteers.
{"title":"Complete genome sequence of two <i>Christensenella minuta</i> strains CIP 112228 and CIP 112229, isolated from human fecal samples.","authors":"Christiane Bouchier, Gérald Touak, Damien Rei, Dominique Clermont","doi":"10.1128/mra.00766-24","DOIUrl":"https://doi.org/10.1128/mra.00766-24","url":null,"abstract":"<p><p><i>Christensenella minuta</i> is one of the representative bacterial species of the human gut microbiome. We report the complete genome sequence of two strains, <i>Christensenella minuta</i> CIP 112228 and CIP 112229, isolated from two healthy volunteers.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522413","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Janette González-Nava, Leilani I Salinas-Virgen, Horacio Sandoval-Trujillo, Ma Eugenia de la Torre-Hernández, Hugo Ramírez-Saad
The complete genome sequence of the opportunistic pathogen Nocardia vulneris is reported. The strain N. vulneris LPB4002 was isolated from a clinical sample of a patient with actinomycetoma. The reported genome comprises a single 9,489-Kb closed chromosome, with 8,584 protein-coding genes and 68% GC content.
{"title":"Complete genome of the opportunistic pathogen <i>Nocardia vulneris</i> strain LPB4002 and its biosynthetic potential.","authors":"Janette González-Nava, Leilani I Salinas-Virgen, Horacio Sandoval-Trujillo, Ma Eugenia de la Torre-Hernández, Hugo Ramírez-Saad","doi":"10.1128/mra.00840-24","DOIUrl":"https://doi.org/10.1128/mra.00840-24","url":null,"abstract":"<p><p>The complete genome sequence of the opportunistic pathogen <i>Nocardia vulneris</i> is reported. The strain <i>N. vulneris</i> LPB4002 was isolated from a clinical sample of a patient with actinomycetoma. The reported genome comprises a single 9,489-Kb closed chromosome, with 8,584 protein-coding genes and 68% GC content.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Escherichia coli strain, AKS1GF ICAR-CIFRI, was isolated from a thermally contaminated water with average water temperatures of 45°C ± 2.5°C in river Ganga, India. The draft genome sequence is of 4.7 MB consisting of 44 contigs. The strain contains 4,314 protein coding genes and 96 RNA genes.
{"title":"Draft genome sequence of heat-tolerant <i>Escherichia coli</i> strain AKS1GF CIFRI isolated from a coal power plant discharge in the river ganga.","authors":"Amiya Kumar Sahoo, Dharmendra Kumar Meena, Basanta Kumar Das, Subhankhi Dasgupta, Smruti Samantaray, Debasmita Mohanty, Ayushman Gadnayak, Subhasmita Behera, Asit Kumar Bera","doi":"10.1128/mra.00953-24","DOIUrl":"https://doi.org/10.1128/mra.00953-24","url":null,"abstract":"<p><p><i>Escherichia coli</i> strain, AKS1GF ICAR-CIFRI, was isolated from a thermally contaminated water with average water temperatures of 45°C ± 2.5°C in river Ganga, India. The draft genome sequence is of 4.7 MB consisting of 44 contigs. The strain contains 4,314 protein coding genes and 96 RNA genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Burkholderia cepacia BCTT, isolated from chronically polluted soil in Trinidad, shows a capacity to survive in crude oil as a sole carbon source. Here, we report its high-quality draft genome sequence and highlight those pathways and genes involved in xenobiotic degradation. These data give a clearer insight into this organism's biotechnological potential.
{"title":"Draft genome of hydrocarbon-degrader <i>Burkholderia cepacia</i> BCTT, isolated from soil chronically polluted with crude oil in Trinidad.","authors":"Amanda Christine Ramdass, Sephra Nalini Rampersad","doi":"10.1128/mra.00902-24","DOIUrl":"https://doi.org/10.1128/mra.00902-24","url":null,"abstract":"<p><p><i>Burkholderia cepacia</i> BCTT<i>,</i> isolated from chronically polluted soil in Trinidad, shows a capacity to survive in crude oil as a sole carbon source. Here, we report its high-quality draft genome sequence and highlight those pathways and genes involved in xenobiotic degradation. These data give a clearer insight into this organism's biotechnological potential.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142522416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}