Pub Date : 2025-02-11Epub Date: 2024-12-27DOI: 10.1128/mra.01122-24
M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos
Tenacibaculum maritimum is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.
{"title":"First complete genome sequence of <i>Tenacibaculum maritimum</i> serotype O4, a rising threat in marine aquaculture.","authors":"M Pilar Escribano, Rubén Salvador-Clavell, Miguel Balado, Beatriz Magariños, Carmen Amaro, Manuel L Lemos","doi":"10.1128/mra.01122-24","DOIUrl":"10.1128/mra.01122-24","url":null,"abstract":"<p><p><i>Tenacibaculum maritimum</i> is a Gram-negative marine fish pathogen. Here, we present the complete genome sequence of strain SP9.1, representing the emerging serotype O4. Selected as a model for pathogenesis studies, this genome provides valuable insights into the genetic basis of virulence and adaptation, complementing existing data for serotype O1.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0112224"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812311/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2025-01-08DOI: 10.1128/mra.01253-24
Kazutoshi Murotomi, Dieter M Tourlousse, Mayu Hamajima, Yuji Sekiguchi
We describe a complete genome sequence of Roseburia faecis strain M72/1T (= JCM 17581T = DSM 16840T = NCIMB 14031T). The genome assembly consists of a single circular chromosome with a length of 3,385,415 base pairs and was predicted to contain 3,338 genes and encode for 3,180 proteins.
{"title":"Complete genome sequence of <i>Roseburia faecis</i> M72/1<sup>T</sup>.","authors":"Kazutoshi Murotomi, Dieter M Tourlousse, Mayu Hamajima, Yuji Sekiguchi","doi":"10.1128/mra.01253-24","DOIUrl":"10.1128/mra.01253-24","url":null,"abstract":"<p><p>We describe a complete genome sequence of <i>Roseburia faecis</i> strain M72/1<sup>T</sup> (= JCM 17581<sup>T</sup> = DSM 16840<sup>T</sup> = NCIMB 14031<sup>T</sup>). The genome assembly consists of a single circular chromosome with a length of 3,385,415 base pairs and was predicted to contain 3,338 genes and encode for 3,180 proteins.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0125324"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812376/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2025-01-17DOI: 10.1128/mra.01081-24
Anuradha J Punchihewage-Don, Nur A Hasan, Salina Parveen
We report 16S rRNA sequencing of microbiomes associated with organic and conventional retail chickens (n=31), processed via whole-carcass enrichment and rinse methodologies. Amplicon sequencing was performed targeting the V3-V4 region of the 16S rRNA gene, which resulted with Good's coverage exceeding 99.7% of the libraries.
{"title":"16S rRNA amplicon sequencing of organic and conventional chickens.","authors":"Anuradha J Punchihewage-Don, Nur A Hasan, Salina Parveen","doi":"10.1128/mra.01081-24","DOIUrl":"10.1128/mra.01081-24","url":null,"abstract":"<p><p>We report 16S rRNA sequencing of microbiomes associated with organic and conventional retail chickens (<i>n</i>=31), processed via whole-carcass enrichment and rinse methodologies. Amplicon sequencing was performed targeting the V3-V4 region of the 16S rRNA gene, which resulted with Good's coverage exceeding 99.7% of the libraries.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0108124"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812310/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143008491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2025-01-21DOI: 10.1128/mra.00858-24
Gaosheng Wang, Yumin Zeng, Yuwu Bu, Xiaolong Yuan, Mingjun Peng, Qianchi Zhao, Yi Wang
Armillaria calvescens is a symbiotic fungus of Gastrodia elata. Here, we present a draft genome sequence of A. calvescens strain YAFA0618. The genome resource will support subsequent research into the relationship between A. calvescens and G. elata.
{"title":"Draft genome sequence of <i>Armillaria calvescens</i> strain YAFA0618 associated with <i>Gastrodia elata</i>.","authors":"Gaosheng Wang, Yumin Zeng, Yuwu Bu, Xiaolong Yuan, Mingjun Peng, Qianchi Zhao, Yi Wang","doi":"10.1128/mra.00858-24","DOIUrl":"10.1128/mra.00858-24","url":null,"abstract":"<p><p><i>Armillaria calvescens</i> is a symbiotic fungus of <i>Gastrodia elata</i>. Here, we present a draft genome sequence of <i>A. calvescens</i> strain YAFA0618. The genome resource will support subsequent research into the relationship between <i>A. calvescens</i> and <i>G. elata</i>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0085824"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812339/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143008503","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-19DOI: 10.1128/mra.01114-24
Jinwoo Ahn, Jeonghwan Jang
We report here the complete genome sequence of Neobacillus sp. strain OS1-2, a bacterium isolated from apple orchard soil and possessing a complete set of denitrification functional genes in its genome. The isolate was observed to perform denitrification under aerobic and anaerobic conditions.
{"title":"Complete genome sequence of <i>Neobacillus</i> sp. strain OS1-2, a denitrifying bacterium isolated from apple orchard soil.","authors":"Jinwoo Ahn, Jeonghwan Jang","doi":"10.1128/mra.01114-24","DOIUrl":"10.1128/mra.01114-24","url":null,"abstract":"<p><p>We report here the complete genome sequence of <i>Neobacillus</i> sp. strain OS1-2, a bacterium isolated from apple orchard soil and possessing a complete set of denitrification functional genes in its genome. The isolate was observed to perform denitrification under aerobic and anaerobic conditions.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0111424"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812405/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-19DOI: 10.1128/mra.01031-24
Thomas Guy, Colleen Harlton, Siyun Wang, Karen Fong
Salmonella enterica is a Gram-negative inhabitant of the gastrointestinal tract of warm-blooded animals and commonly implicated in foodborne illness. Here, we describe the isolation of Salmonella enterica phage SeKF_80. The 89,965 bp genome contains 174 predicted coding sequences with 44 predicted functions. Phage SeKF_80 shares species-level similarity with Salmonella phages 7-11.
{"title":"Complete genome sequence of <i>Salmonella enterica</i> bacteriophage SeKF_80, isolated from wastewater in British Columbia.","authors":"Thomas Guy, Colleen Harlton, Siyun Wang, Karen Fong","doi":"10.1128/mra.01031-24","DOIUrl":"10.1128/mra.01031-24","url":null,"abstract":"<p><p><i>Salmonella enterica</i> is a Gram-negative inhabitant of the gastrointestinal tract of warm-blooded animals and commonly implicated in foodborne illness. Here, we describe the isolation of <i>Salmonella enterica</i> phage SeKF_80. The 89,965 bp genome contains 174 predicted coding sequences with 44 predicted functions. Phage SeKF_80 shares species-level similarity with <i>Salmonella</i> phages 7-11.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0103124"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812318/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854840","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-23DOI: 10.1128/mra.00942-24
Andrew F Herbig, Eliana M Pendergrass
Adastra is a lytic bacteriophage that infects Bacillus subtilis. Here, we report the sequencing and annotation of the 136,306-bp genome of Adastra and its similarity to other myophages in the SPO1 family.
{"title":"Complete genome sequence of <i>Bacillus subtilis</i> bacteriophage Adastra.","authors":"Andrew F Herbig, Eliana M Pendergrass","doi":"10.1128/mra.00942-24","DOIUrl":"10.1128/mra.00942-24","url":null,"abstract":"<p><p>Adastra is a lytic bacteriophage that infects <i>Bacillus subtilis</i>. Here, we report the sequencing and annotation of the 136,306-bp genome of Adastra and its similarity to other myophages in the SPO1 family.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0094224"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812378/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142877431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-23DOI: 10.1128/mra.00990-24
Damilare Ajagbe, William Marsh, Robert Murdoch, Babu Fathepure
The draft genome sequence of Modicisalibacter sp. strain Wilcox, isolated from produced water, is presented. The genome is 3.6 Mb in size with 3,283 protein-coding genes, including genes for hydrocarbon degradation, heavy metal resistance, and adaptation to high salinity. This genome provides insights into molecular mechanisms of hydrocarbon degradation under hypersaline conditions.
{"title":"Draft genome sequence of <i>Modicisalibacter</i> sp. strain Wilcox isolated from produced water.","authors":"Damilare Ajagbe, William Marsh, Robert Murdoch, Babu Fathepure","doi":"10.1128/mra.00990-24","DOIUrl":"10.1128/mra.00990-24","url":null,"abstract":"<p><p>The draft genome sequence of <i>Modicisalibacter</i> sp. strain Wilcox, isolated from produced water, is presented. The genome is 3.6 Mb in size with 3,283 protein-coding genes, including genes for hydrocarbon degradation, heavy metal resistance, and adaptation to high salinity. This genome provides insights into molecular mechanisms of hydrocarbon degradation under hypersaline conditions.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0099024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812360/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142877534","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-27DOI: 10.1128/mra.01173-24
Egor A Vasyagin, Alexey V Beletsky, Maxim Yu Shalamitskiy, Karina A Semenova, Nikolai V Ravin, Andrey V Mardanov
Kluyveromyces marxianus is a yeast widely used in the dairy industry and frequently isolated from vineyards and wineries. Its capacity to metabolize diverse sugars makes it highly promising for winemaking applications. We report the draft genome sequence of the K. marxianus strain U848.
{"title":"Draft genome sequences of <i>Kluyveromyces marxianus</i> strain U848 isolated from <i>Agave sisalana</i>.","authors":"Egor A Vasyagin, Alexey V Beletsky, Maxim Yu Shalamitskiy, Karina A Semenova, Nikolai V Ravin, Andrey V Mardanov","doi":"10.1128/mra.01173-24","DOIUrl":"10.1128/mra.01173-24","url":null,"abstract":"<p><p><i>Kluyveromyces marxianus</i> is a yeast widely used in the dairy industry and frequently isolated from vineyards and wineries. Its capacity to metabolize diverse sugars makes it highly promising for winemaking applications. We report the draft genome sequence of the <i>K. marxianus</i> strain U848.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0117324"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812298/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-11Epub Date: 2024-12-27DOI: 10.1128/mra.00883-24
Adrian Estrada-Graf, Hari Koneru, Jason Arnold, Sara Calhoun, Igor V Grigoriev, Zackary I Johnson
The microalga Nannochloropsis is an important organism for algae-based biocommodity production of food, feed, and fuel, among other products. Using PacBio Revio, we sequenced, assembled, and annotated a 26.41 Mbp Nannochloropsis oceanica C018 genome.
{"title":"Genome assembly and annotation of microalga <i>Nannochloropsis oceanica</i> C018.","authors":"Adrian Estrada-Graf, Hari Koneru, Jason Arnold, Sara Calhoun, Igor V Grigoriev, Zackary I Johnson","doi":"10.1128/mra.00883-24","DOIUrl":"10.1128/mra.00883-24","url":null,"abstract":"<p><p>The microalga <i>Nannochloropsis</i> is an important organism for algae-based biocommodity production of food, feed, and fuel, among other products. Using PacBio Revio, we sequenced, assembled, and annotated a 26.41 Mbp <i>Nannochloropsis oceanica</i> C018 genome.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0088324"},"PeriodicalIF":0.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11812345/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}