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Draft genome sequences of Bordetella parapertussis clinical isolates during an increase in confirmed cases from Colombia, 2023.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-05 DOI: 10.1128/mra.00672-24
Efraín Montilla-Escudero, Fabiola Rojas-Baquero, Valentina Bonilla-Bravo, Nathalia Vargas-Florez

We report three Bordetella parapertussis genome sequences obtained from national pertussis surveillance in Colombia during an increase in confirmed cases not linked to outbreaks.

{"title":"Draft genome sequences of <i>Bordetella parapertussis</i> clinical isolates during an increase in confirmed cases from Colombia, 2023.","authors":"Efraín Montilla-Escudero, Fabiola Rojas-Baquero, Valentina Bonilla-Bravo, Nathalia Vargas-Florez","doi":"10.1128/mra.00672-24","DOIUrl":"https://doi.org/10.1128/mra.00672-24","url":null,"abstract":"<p><p>We report three <i>Bordetella parapertussis</i> genome sequences obtained from national pertussis surveillance in Colombia during an increase in confirmed cases not linked to outbreaks.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0067224"},"PeriodicalIF":0.7,"publicationDate":"2025-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143190009","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequences of two verona integron-encoded metallo-ß-lactamase (VIM)-producing enterobacterales isolated from dogs in the United States.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-05 DOI: 10.1128/mra.00892-24
Dhruv Desai, Stephen D Cole

This announcement reports the complete genome sequences, created by combined Illumina and Oxford Nanopore sequencing, of two carbapenemase-producing Enterobacterales (Escherichia coli [LaAc-1-20] and Enterobacter hormaechei, strain 19632-21) isolated from dogs in the United States. Both isolates harbor a blaVIM-4 gene found on a 47 kb plasmid and on the bacterial chromosome, respectively.

{"title":"Complete genome sequences of two verona integron-encoded metallo-ß-lactamase (VIM)-producing enterobacterales isolated from dogs in the United States.","authors":"Dhruv Desai, Stephen D Cole","doi":"10.1128/mra.00892-24","DOIUrl":"https://doi.org/10.1128/mra.00892-24","url":null,"abstract":"<p><p>This announcement reports the complete genome sequences, created by combined Illumina and Oxford Nanopore sequencing, of two carbapenemase-producing Enterobacterales (<i>Escherichia coli</i> [LaAc-1-20] and <i>Enterobacter hormaechei</i>, strain 19632-21) isolated from dogs in the United States. Both isolates harbor a blaVIM-4 gene found on a 47 kb plasmid and on the bacterial chromosome, respectively.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0089224"},"PeriodicalIF":0.7,"publicationDate":"2025-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143190007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome of Enterococcus faecium CV167, a bacteriocinogenic strain isolated from raw milk in Minas Gerais, Brazil.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-05 DOI: 10.1128/mra.01036-24
Yasmin Neves Vieira Sabino, Joice Fátima Moreira Silva, Bruna Vieira Alonso, Isabela Vieira Barbosa, Paula Aparecida Azevedo Almeida, Claudia Oliveira Pinto, Humberto Moreira Hungaro, Marcio Roberto Silva, Guilherme Nunes de Souza, Geraldo Marcio Costa, Heloisa Carneiro, Karina Neoob de Carvalho Castro, Aline Dias Paiva, Laura Maria Bruno, João Batista Ribeiro

Here, we describe the draft genome sequence of Enterococcus faecium CV167, a strain isolated from raw milk in Brazil that exhibits antimicrobial activity against various pathogens. The draft genome has a completeness index of 99.3%, spans 2,736,418 base pairs, has a guanine-cytosine content of 37.93%, and encodes 2,554 proteins.

{"title":"Draft genome of <i>Enterococcus faecium</i> CV167, a bacteriocinogenic strain isolated from raw milk in Minas Gerais, Brazil.","authors":"Yasmin Neves Vieira Sabino, Joice Fátima Moreira Silva, Bruna Vieira Alonso, Isabela Vieira Barbosa, Paula Aparecida Azevedo Almeida, Claudia Oliveira Pinto, Humberto Moreira Hungaro, Marcio Roberto Silva, Guilherme Nunes de Souza, Geraldo Marcio Costa, Heloisa Carneiro, Karina Neoob de Carvalho Castro, Aline Dias Paiva, Laura Maria Bruno, João Batista Ribeiro","doi":"10.1128/mra.01036-24","DOIUrl":"https://doi.org/10.1128/mra.01036-24","url":null,"abstract":"<p><p>Here, we describe the draft genome sequence of <i>Enterococcus faecium</i> CV167, a strain isolated from raw milk in Brazil that exhibits antimicrobial activity against various pathogens. The draft genome has a completeness index of 99.3%, spans 2,736,418 base pairs, has a guanine-cytosine content of 37.93%, and encodes 2,554 proteins.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0103624"},"PeriodicalIF":0.7,"publicationDate":"2025-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143190008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gut microbiome metagenomic sequences of honey bees (Apis mellifera) exposed to crops.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-04 DOI: 10.1128/mra.00731-24
L Tran, L Lansing, M Cunningham, J Ho, T Deckers, T Newman, L Wu, A S Gregoris, J Zorz, L Muntz, K Lee, D Trépanier-Leroux, I M Conflitti, M Pepinelli, E M Walsh, N Morfin, J E Powell, N Moran, S E Hoover, S F Pernal, R W Currie, P Giovenazzo, E Guzman-Novoa, H Jabbari, L J Foster, A Zayed, R Ortega Polo, M M Guarna

The gut microbiome of the European honey bee (Apis mellifera) is vital to its health, yet large-scale studies are scarce. We present metagenomic sequencing data from 180 samples collected near and far from eight crops across Canada over 2 years. These data sets will help address various biological and environmental questions.

{"title":"Gut microbiome metagenomic sequences of honey bees (<i>Apis mellifera</i>) exposed to crops.","authors":"L Tran, L Lansing, M Cunningham, J Ho, T Deckers, T Newman, L Wu, A S Gregoris, J Zorz, L Muntz, K Lee, D Trépanier-Leroux, I M Conflitti, M Pepinelli, E M Walsh, N Morfin, J E Powell, N Moran, S E Hoover, S F Pernal, R W Currie, P Giovenazzo, E Guzman-Novoa, H Jabbari, L J Foster, A Zayed, R Ortega Polo, M M Guarna","doi":"10.1128/mra.00731-24","DOIUrl":"https://doi.org/10.1128/mra.00731-24","url":null,"abstract":"<p><p>The gut microbiome of the European honey bee (<i>Apis mellifera</i>) is vital to its health, yet large-scale studies are scarce. We present metagenomic sequencing data from 180 samples collected near and far from eight crops across Canada over 2 years. These data sets will help address various biological and environmental questions.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0073124"},"PeriodicalIF":0.7,"publicationDate":"2025-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143190010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft genome for the horse hair fungus, Marasmius crinis-equi, isolated from cacao in Ghana.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-03 DOI: 10.1128/mra.01108-24
Stephen P Cohen, Indrani Kakati, Ishmael Amoako-Attah, Yahaya Bukari, Bryan A Bailey, Lyndel W Meinhardt

Marasmius crinis-equi, known as the horse hair fungus, is a litter-decomposing fungus that is opportunistically pathogenic on various plants. We sequenced the genome of M. crinis-equi strain GH-76 isolated from thread blight disease-infected cacao leaves in Ghana. The genome is 72.8 Mbp in size and 91.2% complete via benchmarking universal single-copy orthologs (BUSCO).

{"title":"Draft genome for the horse hair fungus, <i>Marasmius crinis-equi</i>, isolated from cacao in Ghana.","authors":"Stephen P Cohen, Indrani Kakati, Ishmael Amoako-Attah, Yahaya Bukari, Bryan A Bailey, Lyndel W Meinhardt","doi":"10.1128/mra.01108-24","DOIUrl":"https://doi.org/10.1128/mra.01108-24","url":null,"abstract":"<p><p><i>Marasmius crinis-equi</i>, known as the horse hair fungus, is a litter-decomposing fungus that is opportunistically pathogenic on various plants. We sequenced the genome of <i>M. crinis-equi</i> strain GH-76 isolated from thread blight disease-infected cacao leaves in Ghana. The genome is 72.8 Mbp in size and 91.2% complete via benchmarking universal single-copy orthologs (BUSCO).</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0110824"},"PeriodicalIF":0.7,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143080539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Coding-complete genome sequence of a bovine viral diarrhea virus subgenotype 1v strain isolated in China.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-03 DOI: 10.1128/mra.01150-24
Shandian Gao, Wei Liu, Junjun Shao, Yun Zhang, Huichen Guo, Huiyun Chang, Jiandong Wang

We sequenced the coding-complete genome sequence of bovine viral diarrhea virus (BVDV) strain NX2019/02. It belongs to the 1v subgenotype. This report will increase our understanding of the epidemiology of BVDV in China.

{"title":"Coding-complete genome sequence of a bovine viral diarrhea virus subgenotype 1v strain isolated in China.","authors":"Shandian Gao, Wei Liu, Junjun Shao, Yun Zhang, Huichen Guo, Huiyun Chang, Jiandong Wang","doi":"10.1128/mra.01150-24","DOIUrl":"https://doi.org/10.1128/mra.01150-24","url":null,"abstract":"<p><p>We sequenced the coding-complete genome sequence of bovine viral diarrhea virus (BVDV) strain NX2019/02. It belongs to the 1v subgenotype. This report will increase our understanding of the epidemiology of BVDV in China.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0115024"},"PeriodicalIF":0.7,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143080601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequences of AZ Arthrobacter phages Wildwest and Sue2.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-02-03 DOI: 10.1128/mra.01078-24
Isabella E Cloud, Ava N Ortega, Angelina M Spencer, Varsha Upadhyayulla, Tamarah L Adair

This announcement reports the complete genome sequences of two bacteriophages isolated from soil samples using the host Arthrobacter atrocyaneus Strain NRRL B-2883. These findings enhance our understanding of AZ1 cluster phages, particularly Wildwest and Sue2, with their unique genomic features.

{"title":"Complete genome sequences of AZ <i>Arthrobacter</i> phages Wildwest and Sue2.","authors":"Isabella E Cloud, Ava N Ortega, Angelina M Spencer, Varsha Upadhyayulla, Tamarah L Adair","doi":"10.1128/mra.01078-24","DOIUrl":"10.1128/mra.01078-24","url":null,"abstract":"<p><p>This announcement reports the complete genome sequences of two bacteriophages isolated from soil samples using the host <i>Arthrobacter atrocyaneus</i> Strain NRRL B-2883. These findings enhance our understanding of AZ1 cluster phages, particularly Wildwest and Sue2, with their unique genomic features.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0107824"},"PeriodicalIF":0.7,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143080606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
clustur: an R package for clustering features using sparse distance matrices.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-30 DOI: 10.1128/mra.01238-24
Gregory Johnson, Sarah L Westcott, Patrick D Schloss

The clustur R package implements the de novo clustering algorithms found in the mothur software package for assigning 16S rRNA gene sequences to operational taxonomic units (OTUs). Making these algorithms accessible through the R ecosystem will foster their further development, broader application, and integration within other R packages.

{"title":"clustur: an R package for clustering features using sparse distance matrices.","authors":"Gregory Johnson, Sarah L Westcott, Patrick D Schloss","doi":"10.1128/mra.01238-24","DOIUrl":"https://doi.org/10.1128/mra.01238-24","url":null,"abstract":"<p><p>The clustur R package implements the <i>de novo</i> clustering algorithms found in the mothur software package for assigning 16S rRNA gene sequences to operational taxonomic units (OTUs). Making these algorithms accessible through the R ecosystem will foster their further development, broader application, and integration within other R packages.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0123824"},"PeriodicalIF":0.7,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143066614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-genome sequence of Salmonella enterica subsp. diarizonae serovar 17: l,v:z: a new serovar isolated from a nose-horned viper in Republic of Serbia.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-30 DOI: 10.1128/mra.01174-24
Kazimir Matović, Natasa Galić, Dejan Vidanović, Milanko Šekler, Marko Dmitrić, Nikola Vasković, Zoran Debeljak, Bojana Tešović, Aleksandar Simović, Ivan Bošnjak, Dejan Krnjaić, Jörg Linde, Ulrich Methner

We report the draft genome sequence of Salmonella enterica subsp. diarizonae serovar 17: l,v:z isolated from a nose-horned viper (Vipera ammodytes) in Republic of Serbia which might be considered a new serovar of Salmonella.

{"title":"Whole-genome sequence of <i>Salmonella enterica</i> subsp. <i>diarizonae</i> serovar 17: l,v:z: a new serovar isolated from a nose-horned viper in Republic of Serbia.","authors":"Kazimir Matović, Natasa Galić, Dejan Vidanović, Milanko Šekler, Marko Dmitrić, Nikola Vasković, Zoran Debeljak, Bojana Tešović, Aleksandar Simović, Ivan Bošnjak, Dejan Krnjaić, Jörg Linde, Ulrich Methner","doi":"10.1128/mra.01174-24","DOIUrl":"https://doi.org/10.1128/mra.01174-24","url":null,"abstract":"<p><p>We report the draft genome sequence of <i>Salmonella</i> enterica subsp. <i>diarizonae</i> serovar 17: l,v:z isolated from a nose-horned viper (<i>Vipera ammodytes</i>) in Republic of Serbia which might be considered a new serovar of <i>Salmonella</i>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0117424"},"PeriodicalIF":0.7,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143066620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome of Mycoplasmoides cavipharyngis strain 117C, a close relative of hemotrophic mycoplasma.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-30 DOI: 10.1128/mra.00556-24
Janina Kramer, Christina Zübert, Bruno Huettel, Michael Kube, Ludwig E Hoelzle

Mycoplasmoides cavipharyngis is one of the closest relatives of the highly host-adapted and uncultivable hemotrophic mycoplasma. The complete genome of strain 117C was constructed from long-reads derived from Pacific Biosciences single-molecule, real-time sequencing technology. The genome is organized into one circular, gapless chromosome with a length of 1,034 kb.

{"title":"The complete genome of <i>Mycoplasmoides cavipharyngis</i> strain 117C, a close relative of hemotrophic mycoplasma.","authors":"Janina Kramer, Christina Zübert, Bruno Huettel, Michael Kube, Ludwig E Hoelzle","doi":"10.1128/mra.00556-24","DOIUrl":"https://doi.org/10.1128/mra.00556-24","url":null,"abstract":"<p><p><i>Mycoplasmoides cavipharyngis</i> is one of the closest relatives of the highly host-adapted and uncultivable hemotrophic mycoplasma. The complete genome of strain 117C was constructed from long-reads derived from Pacific Biosciences single-molecule, real-time sequencing technology. The genome is organized into one circular, gapless chromosome with a length of 1,034 kb.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0055624"},"PeriodicalIF":0.7,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143066618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Microbiology Resource Announcements
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