Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya
In this article, we announce the sequence and draft analysis of the genome of endophyte Bacillus amyloliquefaciens strain Apn01R, isolated from the roots of Alhagi pseudalhagi (Bieb.) Fisch. Our results show genes that may be crucial to defy abiotic stress and repel bacterial and fungal pathogens.
{"title":"Draft genome sequence of endophyte <i>Bacillus amyloliquefaciens</i> strain Apn01R, isolated from the roots of <i>Alhagi pseudalhagi</i> (Bieb.) Fisch.","authors":"Vladimir K Chebotar, Anna V Myskova, Margarita Khudyaeva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya","doi":"10.1128/mra.01074-24","DOIUrl":"https://doi.org/10.1128/mra.01074-24","url":null,"abstract":"<p><p>In this article, we announce the sequence and draft analysis of the genome of endophyte <i>Bacillus amyloliquefaciens</i> strain Apn01R, isolated from the roots of <i>Alhagi pseudalhagi</i> (Bieb.) Fisch. Our results show genes that may be crucial to defy abiotic stress and repel bacterial and fungal pathogens.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0107424"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jessica M Lewis, Daniel K Arens, Abraham Quaye, Diana G Calvopina-Chavez, Kyson T Jensen, Ashley K Miller, Melinda M Moss, M Elizabeth Warren, Justina P Tavana, Steven M Johnson, Julianne H Grose
We announce the complete genomes of Klebsiella phages ValerieMcCarty03 and ValerieMcCarty04 isolated from wastewater treatment plant samples that infect a multidrug-resistant Klebsiella oxytoca clinical isolate. These phages belong to the T4-like cluster and fall within the Jiaodavirus genus.
{"title":"Genome sequences of two <i>Klebsiella</i> phages isolated from wastewater treatment samples that infect a clinical <i>Klebsiella</i> isolate.","authors":"Jessica M Lewis, Daniel K Arens, Abraham Quaye, Diana G Calvopina-Chavez, Kyson T Jensen, Ashley K Miller, Melinda M Moss, M Elizabeth Warren, Justina P Tavana, Steven M Johnson, Julianne H Grose","doi":"10.1128/MRA.00836-23","DOIUrl":"https://doi.org/10.1128/MRA.00836-23","url":null,"abstract":"<p><p>We announce the complete genomes of <i>Klebsiella</i> phages ValerieMcCarty03 and ValerieMcCarty04 isolated from wastewater treatment plant samples that infect a multidrug-resistant <i>Klebsiella oxytoca</i> clinical isolate. These phages belong to the T4-like cluster and fall within the <i>Jiaodavirus</i> genus.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0083623"},"PeriodicalIF":0.7,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142837827","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We present the nuclear and complete mitochondrial genome sequences of Aspergillus clavatophorus NBRC 116038, Aspergillus magnivesiculatus NBRC 116037, and Aspergillus verrucosus NBRC 115547T, all isolated from house dust in Japan. These sequence data are crucial for elucidating the evolutionary characteristics of section Restricti, a unique taxon comprising exclusively xerophilic species.
{"title":"Draft genome sequences of three xerophilic <i>Aspergillus</i> section <i>Restricti</i> species isolated from house dust in Japan.","authors":"Ryo Hagiuda, Dai Hirose","doi":"10.1128/mra.00889-24","DOIUrl":"https://doi.org/10.1128/mra.00889-24","url":null,"abstract":"<p><p>We present the nuclear and complete mitochondrial genome sequences of <i>Aspergillus clavatophorus</i> NBRC 116038, <i>Aspergillus magnivesiculatus</i> NBRC 116037, and <i>Aspergillus verrucosus</i> NBRC 115547<sup>T</sup>, all isolated from house dust in Japan. These sequence data are crucial for elucidating the evolutionary characteristics of section <i>Restricti</i>, a unique taxon comprising exclusively xerophilic species.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0088924"},"PeriodicalIF":0.7,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nicole T Cavanaugh, Girish Kumar, Matteo Couto Frignani, Nathan Thewedros, Marcello Twahirwa, Carlos Riquelme, André O Hudson, Yunrong Chai, Veronica Godoy-Carter
The Atacama Desert is home to bacteria that use biofilms as a means of protecting themselves against the harsh environment. To inform research regarding this survival mechanism, we cultured and sequenced the genomes of three Bacillus sp. isolates from Atacama Desert soil.
{"title":"Whole-genome sequencing of three extremophile <i>Bacillus</i> sp. strains isolated from the Atacama Desert.","authors":"Nicole T Cavanaugh, Girish Kumar, Matteo Couto Frignani, Nathan Thewedros, Marcello Twahirwa, Carlos Riquelme, André O Hudson, Yunrong Chai, Veronica Godoy-Carter","doi":"10.1128/mra.00679-24","DOIUrl":"https://doi.org/10.1128/mra.00679-24","url":null,"abstract":"<p><p>The Atacama Desert is home to bacteria that use biofilms as a means of protecting themselves against the harsh environment. To inform research regarding this survival mechanism, we cultured and sequenced the genomes of three <i>Bacillus</i> sp. isolates from Atacama Desert soil.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0067924"},"PeriodicalIF":0.7,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Bradyrhizobium sp. Ash2021 is a free-living soil bacterium isolated from a Pinus radiata forest in Canterbury, New Zealand. The genome comprises of a 9,328,819 bp chromosome and a 375,468 bp plasmid. The chromosome harbors biosynthesis pathways for auxins, thiazole-oxazole-modified microcins, and polyketide synthase. The plasmid harbors lactate and GlcNAc metabolism genes.
Bradyrhizobium sp. Ash2021 是一种自由生活的土壤细菌,从新西兰坎特伯雷的辐射松林中分离出来。其基因组由一条 9,328,819 bp 的染色体和一条 375,468 bp 的质粒组成。染色体上含有辅酶、噻唑-噁唑修饰的微素和多酮合成酶的生物合成途径。质粒含有乳酸和 GlcNAc 代谢基因。
{"title":"Genome sequence of <i>Bradyrhizobium</i> sp. Ash2021, a free-living <i>Bradyrhizobium</i> species isolated from <i>Pinus radiata</i> forest soil.","authors":"Charlotte Armstrong, Steve Wakelin","doi":"10.1128/mra.00852-24","DOIUrl":"https://doi.org/10.1128/mra.00852-24","url":null,"abstract":"<p><p><i>Bradyrhizobium</i> sp. Ash2021 is a free-living soil bacterium isolated from a <i>Pinus radiata</i> forest in Canterbury, New Zealand. The genome comprises of a 9,328,819 bp chromosome and a 375,468 bp plasmid. The chromosome harbors biosynthesis pathways for auxins, thiazole-oxazole-modified microcins, and polyketide synthase. The plasmid harbors lactate and GlcNAc metabolism genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0085224"},"PeriodicalIF":0.7,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aureobasidium pullulans is a well-studied polyextremotolerant generalist fungus with a ubiquitous distribution, which can efficiently secret extracellular polysaccharides, especially pullulan. Here, we reported the draft genome of A. pullulans ATCC15233, whose genome length is 30,444,007 bp, with a GC content of 50.63%.
{"title":"Draft genome sequence of <i>Aureobasidium pullulans</i> ATCC15233.","authors":"Shuang Li, Xiuyun Wu, Jing Meng","doi":"10.1128/mra.00756-24","DOIUrl":"https://doi.org/10.1128/mra.00756-24","url":null,"abstract":"<p><p><i>Aureobasidium pullulans</i> is a well-studied polyextremotolerant generalist fungus with a ubiquitous distribution, which can efficiently secret extracellular polysaccharides, especially pullulan. Here, we reported the draft genome of <i>A. pullulans</i> ATCC15233, whose genome length is 30,444,007 bp, with a GC content of 50.63%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0075624"},"PeriodicalIF":0.7,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829339","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We present a novel pathogenic and multidrug-resistant Kytococcus sedentarius isolated from Labeo rohita. The bacterium belongs to the Micrococcales order and has a genome consisting of 2.59 Mb in length and 71.7% GC content. K. sedentarius contains 2,393 coding gene sequences, 6 rRNA, 51 tRNA, 1 tmRNA, and 2,173 antimicrobial resistance genes.
{"title":"Whole-genome sequencing of novel pathogenic and multidrug-resistant <i>Kytococcus sedentarius</i>, causing mortality in fish species (<i>Labeo rohita</i>).","authors":"Basanta Kumar Das, Vikash Kumar, Suvra Roy, Debasmita Mohanty, Asim Kumar Jana, Ayushman Gadnayak","doi":"10.1128/mra.01127-24","DOIUrl":"https://doi.org/10.1128/mra.01127-24","url":null,"abstract":"<p><p>We present a novel pathogenic and multidrug-resistant <i>Kytococcus sedentarius</i> isolated from <i>Labeo rohita</i>. The bacterium belongs to the Micrococcales order and has a genome consisting of 2.59 Mb in length and 71.7% GC content. <i>K. sedentarius</i> contains 2,393 coding gene sequences, 6 rRNA, 51 tRNA, 1 tmRNA, and 2,173 antimicrobial resistance genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0112724"},"PeriodicalIF":0.7,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report the complete genome sequence of strain AEG42_29, a representative of the genus Paraconexibacter isolated from a temperate grassland soil. Its genome codes for several genes involved in stress response, defense, and virulence, which may help this bacterium cope with fluctuating conditions in the soil environment.
{"title":"Complete genome sequence of strain AEG42_29 (DSM 112329), a member of the genus <i>Paraconexibacter</i> isolated from soil.","authors":"Selma Vieira, Katharina Huber, Alicia Geppert, Jörg Overmann","doi":"10.1128/mra.01163-24","DOIUrl":"https://doi.org/10.1128/mra.01163-24","url":null,"abstract":"<p><p>We report the complete genome sequence of strain AEG42_29, a representative of the genus <i>Paraconexibacter</i> isolated from a temperate grassland soil. Its genome codes for several genes involved in stress response, defense, and virulence, which may help this bacterium cope with fluctuating conditions in the soil environment.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0116324"},"PeriodicalIF":0.7,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In this study, we present whole genome sequences of Staphylococcus aureus RN4220. Using PacBio DNA sequencing and de novo assembly, we obtained a single contig of 2,697,647 bp, which includes 2,652 predicted genes comprising protein-coding sequences, tRNAs, and rRNAs.
{"title":"Genome sequences of <i>Staphylococcus aureus</i> RN4220.","authors":"Eon-Min Ko, Seonghan Kim","doi":"10.1128/mra.00462-24","DOIUrl":"https://doi.org/10.1128/mra.00462-24","url":null,"abstract":"<p><p>In this study, we present whole genome sequences of <i>Staphylococcus aureus</i> RN4220. Using PacBio DNA sequencing and <i>de novo</i> assembly, we obtained a single contig of 2,697,647 bp, which includes 2,652 predicted genes comprising protein-coding sequences, tRNAs, and rRNAs.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0046224"},"PeriodicalIF":0.7,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829354","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Federico Valdez, Lauro Velazquez-Salinas, Lawrence H Zhou, George R Smoliga, Ian Fish, Roberto Navarro-Lopez, Irene Lopez-Gonzalez, Kathryn A Hanley, Chad E Mire, Luis L Rodriguez, Jonathan Arzt
Here, we report the near full-length genome sequence of a Vesiculovirus newjersey isolate obtained from a naturally infected cow (Bos taurus) in the state of Chiapas, Mexico. This sequence will support future efforts to improve our understanding of the evolutionary dynamics of this pathogen in endemic regions of Mexico.
{"title":"Near full-length genome sequence of a vesicular stomatitis New Jersey virus isolate collected from a naturally infected cow in the endemic state of Chiapas, Mexico.","authors":"Federico Valdez, Lauro Velazquez-Salinas, Lawrence H Zhou, George R Smoliga, Ian Fish, Roberto Navarro-Lopez, Irene Lopez-Gonzalez, Kathryn A Hanley, Chad E Mire, Luis L Rodriguez, Jonathan Arzt","doi":"10.1128/mra.01007-24","DOIUrl":"https://doi.org/10.1128/mra.01007-24","url":null,"abstract":"<p><p>Here, we report the near full-length genome sequence of a <i>Vesiculovirus newjersey</i> isolate obtained from a naturally infected cow (<i>Bos taurus</i>) in the state of Chiapas, Mexico. This sequence will support future efforts to improve our understanding of the evolutionary dynamics of this pathogen in endemic regions of Mexico.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0100724"},"PeriodicalIF":0.7,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142818712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}