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The Role of Tumor-Intrinsic HuR in Modeling the Pancreatic Tumor Microenvironment: Molecular Mechanisms and Therapeutic Opportunities. 肿瘤内在HuR在胰腺肿瘤微环境建模中的作用:分子机制和治疗机会。
IF 2.7 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 Epub Date: 2025-10-13 DOI: 10.1080/10985549.2025.2557414
Katherine R Pelz, Kyle P Gribbin, Tess Sevetson, Jonathan R Brody

Pancreatic ductal adenocarcinoma (PDAC) remains largely refractory to therapy, due in part to the complex interplay between tumor cells and their microenvironment. Human antigen R (HuR/ELAVL1), a ubiquitously expressed RNA-binding protein, is emerging as an important regulator both of tumor-intrinsic and tumor-extrinsic pathways that govern PDAC progression. While the role of HuR in promoting cancer cell survival under stress is well established, recent studies reveal its broader role in shaping the tumor microenvironment (TME), including metabolic rewiring, stromal activation, angiogenesis, and immune modulation. In this review, we examine how tumor-intrinsic HuR drives epithelial-mesenchymal transition, stabilizes key transcripts involved in metabolic adaptation, and alters the tumor secretome to influence extracellular matrix deposition and fibroblast behavior. We further explore the role of HuR in regulating immune cell function and the immune landscape of PDAC. Notably, HuR-driven TME remodeling reinforces environmental stressors that further activate HuR, establishing a feed-forward loop that drives disease progression. These findings underscore HuR as a central regulator of the PDAC TME and therapeutic resistance, and thus, highlight its potential as a target in PDAC.

胰腺导管腺癌(PDAC)在很大程度上仍然难以治疗,部分原因是肿瘤细胞与其微环境之间复杂的相互作用。人抗原R (HuR/ELAVL1)是一种无处不在表达的rna结合蛋白,它是控制PDAC进展的肿瘤内源性和肿瘤外源性途径的重要调节因子。虽然HuR在促进肿瘤细胞在应激下存活方面的作用已经得到了很好的证实,但最近的研究揭示了它在塑造肿瘤微环境(TME)方面的更广泛作用,包括代谢重组、基质激活、血管生成和免疫调节。在这篇综述中,我们研究了肿瘤内部的HuR如何驱动上皮-间质转化,稳定参与代谢适应的关键转录物,并改变肿瘤分泌组以影响细胞外基质沉积和成纤维细胞行为。我们将进一步探讨HuR在调节PDAC免疫细胞功能和免疫景观中的作用。值得注意的是,hr驱动的TME重塑强化了进一步激活hr的环境压力源,建立了一个推动疾病进展的前馈循环。这些发现强调了HuR作为PDAC TME和治疗耐药的中心调节因子,因此强调了其作为PDAC靶点的潜力。
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引用次数: 0
Protein Phosphatase 1 Regulatory Subunit PNUTS Prevents CENP-A Mislocalization and Chromosomal Instability. 蛋白磷酸酶1调控亚基PNUTS防止CENP-A错位和染色体不稳定性。
IF 2.7 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-01-01 Epub Date: 2025-04-24 DOI: 10.1080/10985549.2025.2487010
Vinutha Balachandra, Makenzie Thomas, Roshan L Shrestha, Subhash Chandra Sethi, Raj Chari, Shinjen Lin, Ken Chih-Chien Cheng, Tatiana S Karpova, Natasha J Caplen, Munira A Basrai

Chromosomal instability (CIN), a major hallmark of cancer, can be driven by defects in the integrity of centromere or kinetochore structure. Coordinated control of phosphorylation and dephosphorylation activities during cell division is critical to ensure chromosomal stability. Overexpression of the centromeric histone H3 variant CENP-A is observed in many cancers, and its mislocalization to noncentromeric regions promotes CIN. We identified protein phosphatase 1 (PP1) nuclear targeting subunit (PNUTS) as a top candidate in a genome-wide siRNA screen for gene depletions that lead to increased nuclear CENP-A levels. Here, we define a role for PNUTS in preventing CENP-A mislocalization and CIN. Depletion of PNUTS resulted in high nuclear CENP-A levels throughout the cell cycle in a PP1-dependent manner. Consistent with these results, mislocalization of CENP-A and its interacting partner CENP-C were observed on mitotic chromosomes from PNUTS-depleted cells. Defects in kinetochore integrity and CIN phenotypes were also observed in PNUTS-depleted cells. Mechanistically, we show that depletion of the histone H3.3 chaperone DAXX suppresses the mislocalization of CENP-A and micronuclei incidence in PNUTS-depleted cells. In summary, our studies highlight the importance of phospho-regulation mediated by PNUTS in preventing CENP-A mislocalization and CIN.

染色体不稳定性(CIN)是癌症的一个主要标志,可由着丝粒或着丝粒结构完整性的缺陷驱动。细胞分裂过程中磷酸化和去磷酸化活动的协调控制是确保染色体稳定性的关键。着丝粒组蛋白H3变异体CENP-A在许多癌症中都有过表达,它在非着丝粒区域的错误定位促进了CIN。我们在全基因组siRNA筛选中发现蛋白磷酸酶1 (PP1)核靶向亚基(PNUTS)是导致核CENP-A水平升高的基因缺失的首选候选基因。在这里,我们定义了PNUTS在防止CENP-A错定位和CIN中的作用。PNUTS的耗竭导致在整个细胞周期中以pp1依赖的方式产生高核CENP-A水平。与这些结果一致,在pnuts缺失的细胞有丝分裂染色体上观察到CENP-A及其相互作用伙伴CENP-C的错误定位。在pnuts缺失的细胞中也观察到着丝点完整性和CIN表型的缺陷。在机制上,我们发现组蛋白H3.3伴侣DAXX的缺失抑制了pnuts缺失细胞中CENP-A的错误定位和微核发生率。总之,我们的研究强调了PNUTS介导的磷酸化调控在预防CENP-A错定位和CIN中的重要性。
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引用次数: 0
Midnolin, a Genetic Risk Factor for Parkinson’s Disease, Promotes Neurite Outgrowth Accompanied by Early Growth Response 1 Activation in PC12 Cells 帕金森病的遗传风险因子 Midnolin 能促进 PC12 细胞中神经元的生长,同时激活早期生长应答 1
IF 5.3 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-12 DOI: 10.1080/10985549.2024.2399358
Ayano Chiba Chisato Kato Tadashi Nakagawa Tsukasa Osaki Kohei Nakamura Ikuo Norota Mikako Nagashima Toru Hosoi Kuniaki Ishii Yutaro Obara a Department of Pharmacology, Yamagata University School of Medicine, Yamagata, Japanb Department of Clinical Pharmacology, Faculty of Pharmaceutical Sciences, Sanyo-Onoda City University, Sanyo Onoda, Japanc Department of Biochemistry and Molecular Biology, Yamagata University School of Medicine, Yamagata, Japan
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引用次数: 0
Statement of Retraction: FLIP Protects against Hypoxia/Reoxygenation-Induced Endothelial Cell Apoptosis by Inhibiting Bax Activation. 撤回声明:FLIP通过抑制Bax活化防止缺氧/再氧诱导的内皮细胞凋亡
IF 3.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-03 DOI: 10.1080/10985549.2024.2396764
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引用次数: 0
Selective Hypoxia-Sensitive Oxomer Formation by FIH Prevents Binding of the NF-κB Inhibitor IκBβ to NF-κB Subunits FIH选择性缺氧敏感氧化物形成可阻止NF-κB抑制剂IκBβ与NF-κB亚基结合
IF 5.3 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-22 DOI: 10.1080/10985549.2024.2338727
Yulia L. VolkovaAgnieszka E. JuchtNina OechslerRoopesh KrishnankuttyAlex von KriegsheimRoland H. WengerCarsten C. Scholza Institute of Physiology, University of Zurich, Zurich, Switzerlandb Institute of Physiology, University Medicine Greifswald, Greifswald, Germanyc Institute of Genetics and Cancer, University of Edinburgh, UK
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引用次数: 0
Endogenous EWSR1 Exists in Two Visual Modalities That Reflect Its Associations with Nucleic Acids and Concentration at Sites of Active Transcription 内源性 EWSR1 存在于两种视觉模式,反映了它与核酸的关联以及在活性转录位点的浓度
IF 5.3 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-03-20 DOI: 10.1080/10985549.2024.2315425
Soumya Sundara RajanVernon J. EbegboniPatricio PichlingKatelyn R. LudwigTamara L. JonesRaj ChariAndy TranMichael J. KruhlakJadranka LoncarekNatasha J. Caplena Functional Genetics Section, Genetics Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USAb Genome Modification Core, Laboratory Animal Sciences Program, Frederick National Lab for Cancer Research, Frederick, Maryland, USAc CCR Confocal Microscopy Core Facility, Laboratory of Cancer Biology and Genetics, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USAd Centrosome Biology Section, Cancer Innovation Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA
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引用次数: 0
Uncovering the Role of the Yeast Lysine Acetyltransferase NuA4 in the Regulation of Nuclear Shape and Lipid Metabolism. 揭示酵母赖氨酸乙酰转移酶 NuA4 在核形状和脂质代谢调控中的作用
IF 3.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 Epub Date: 2024-07-04 DOI: 10.1080/10985549.2024.2366206
Sarah Jane Laframboise, Lauren F Deneault, Alix Denoncourt, Michael Downey, Kristin Baetz

Here, we report a novel role for the yeast lysine acetyltransferase NuA4 in regulating phospholipid availability for organelle morphology. Disruption of the NuA4 complex results in 70% of cells displaying nuclear deformations and nearly 50% of cells exhibiting vacuolar fragmentation. Cells deficient in NuA4 also show severe defects in the formation of nuclear-vacuole junctions (NJV), as well as a decrease in piecemeal microautophagy of the nucleus (PMN). To determine the cause of these defects we focused on Pah1, an enzyme that converts phosphatidic acid into diacylglycerol, favoring accumulation of lipid droplets over phospholipids that are used for membrane expansion. NuA4 subunit Eaf1 was required for Pah1 localization to the inner nuclear membrane and artificially tethering of Pah1 to the nuclear membrane rescued nuclear deformation and vacuole fragmentation defects, but not defects related to the formation of NVJs. Mutation of a NuA4-dependent acetylation site on Pah1 also resulted in aberrant Pah1 localization and defects in nuclear morphology and NVJ. Our work suggests a critical role for NuA4 in organelle morphology that is partially mediated through the regulation of Pah1 subcellular localization.

在这里,我们报告了酵母赖氨酸乙酰转移酶NuA4在调节细胞器形态的磷脂可用性方面的新作用。破坏 NuA4 复合物会导致 70% 的细胞出现核变形,近 50% 的细胞出现液泡破碎。缺乏 NuA4 的细胞还表现出核-液泡连接(NJV)形成的严重缺陷,以及细胞核成片微自噬(PMN)的减少。为了确定这些缺陷的原因,我们重点研究了 Pah1,它是一种将磷脂酸转化为二酰基甘油的酶,有利于脂滴的积累,而不是用于膜扩张的磷脂。NuA4亚基Eaf1是Pah1定位到核内膜所必需的,人为地将Pah1拴系到核膜上能挽救核变形和液泡破碎缺陷,但不能挽救与NVJ形成有关的缺陷。Pah1上一个依赖于NuA4的乙酰化位点的突变也会导致Pah1定位异常以及核形态和NVJ缺陷。我们的工作表明,NuA4在细胞器形态中起着关键作用,这种作用部分是通过调节Pah1的亚细胞定位介导的。
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引用次数: 0
Unveiling the Role of Sik1 in Osteoblast Differentiation: Implications for Osteoarthritis. 揭示 Sik1 在成骨细胞分化中的作用:对骨关节炎的影响
IF 3.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 Epub Date: 2024-08-22 DOI: 10.1080/10985549.2024.2385633
Kuanmin Tian, Xiaoxin He, Xue Lin, Xiaolei Chen, Yajing Su, Zhidong Lu, Zhirong Chen, Liang Zhang, Peng Li, Long Ma, Zhibin Lan, Xin Zhao, Gangning Fen, Qinqin Hai, Di Xue, Qunhua Jin

Osteoarthritis (OA) is a chronic degenerative disease characterized by subchondral osteosclerosis, mainly due to osteoblast activity. This research investigates the function of Sik1, a member of the AMP-activated protein kinase family, in OA. Proteomic analysis was conducted on clinical samples from 30 OA patients, revealing a negative correlation between Sik1 expression and OA. In vitro experiments utilized BMSCs to examine the effect of Sik1 on osteogenic differentiation. BMSCs were cultured and induced toward osteogenesis with specific media. Sik1 overexpression was achieved through lentiviral transfection, followed by analysis of osteogenesis-associated proteins using Western blotting, RT-qPCR, and alkaline phosphate staining. In vivo experiments involved destabilizing the medial meniscus in mice to establish an OA model, assessing the therapeutic potential of Sik1. The CT scans and histological staining were used to analyze subchondral bone alterations and cartilage damage. The findings show that Sik1 downregulation correlates with advanced OA and heightened osteogenic differentiation in BMSCs. Sik1 overexpression inhibits osteogenesis-related markers in vitro and reduces cartilage damage and subchondral osteosclerosis in vivo. Mechanistically, Sik1 modulates osteogenesis and subchondral bone changes through Runx2 activity regulation. The research emphasizes Sik1 as a promising target for treating OA, suggesting its involvement in controlling bone formation and changes in the subchondral osteosclerosis.

骨关节炎(OA)是一种以软骨下骨质硬化为特征的慢性退行性疾病,主要是由于成骨细胞的活动所致。本研究调查了 AMP 激活蛋白激酶家族成员 Sik1 在 OA 中的功能。研究人员对30名OA患者的临床样本进行了蛋白质组分析,发现Sik1的表达与OA呈负相关。体外实验利用 BMSCs 研究 Sik1 对成骨分化的影响。用特定培养基培养并诱导 BMSCs 成骨。通过慢病毒转染实现 Sik1 的过表达,然后使用 Western 印迹、RT-qPCR 和碱性磷酸染色分析成骨相关蛋白。体内实验包括破坏小鼠内侧半月板的稳定性,以建立 OA 模型,评估 Sik1 的治疗潜力。CT 扫描和组织学染色用于分析软骨下骨的改变和软骨损伤。研究结果表明,Sik1 的下调与晚期 OA 和 BMSCs 的成骨分化增强相关。Sik1 在体外过表达可抑制成骨相关标记物,在体内可减少软骨损伤和软骨下骨质硬化。从机制上讲,Sik1 通过调节 Runx2 的活性来调节成骨和软骨下骨的变化。该研究强调,Sik1是治疗OA的一个有前景的靶点,表明它参与控制骨形成和软骨下骨质硬化的变化。
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引用次数: 0
A Genome Wide CRISPR Screen Reveals That HOXA9 Promotes Enzalutamide Resistance in Prostate Cancer. 全基因组 CRISPR 筛选揭示 HOXA9 可促进前列腺癌的恩杂鲁胺抗性
IF 3.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 Epub Date: 2024-09-20 DOI: 10.1080/10985549.2024.2401465
Michael V Roes, Frederick A Dick

Androgen receptor inhibitors are commonly used for prostate cancer treatment, but acquired resistance is a significant problem. Codeletion of RB and p53 is common in castration resistant prostate cancers, however they are difficult to target pharmacologically. To comprehensively identify gene loss events that contribute to enzalutamide response, we performed a genome-wide CRISPR knockout screen in LNCaP prostate cancer cells. This revealed novel genes implicated in resistance that are largely unstudied. Gene loss events that confer enzalutamide sensitivity are enriched for GSEA categories related to stem cell and epigenetic regulation. We investigated the myeloid lineage stem cell factor HOXA9 as a candidate gene whose loss promotes sensitivity to enzalutamide. Cancer genomic data reveals that HOXA9 overexpression correlates with poor prognosis and characteristics of advanced prostate cancer. In cell culture, HOXA9 depletion sensitizes cells to enzalutamide, whereas overexpression drives enzalutamide resistance. Combination of the HOXA9 inhibitor DB818 with enzalutamide demonstrates synergy. This demonstrates the utility of our CRISPR screen data in discovering new approaches for treating enzalutamide resistant prostate cancer.

雄激素受体抑制剂是治疗前列腺癌的常用药物,但获得性抗药性是一个重要问题。RB和p53基因缺失在对阉割产生耐药性的前列腺癌中很常见,但它们很难成为药理靶点。为了全面鉴定导致恩杂鲁胺反应的基因缺失事件,我们在LNCaP前列腺癌细胞中进行了全基因组CRISPR基因敲除筛选。这揭示了与抗药性有关的新基因,而这些基因在很大程度上尚未得到研究。赋予恩杂鲁胺敏感性的基因缺失事件富集于与干细胞和表观遗传调控相关的GSEA类别。我们将髓系干细胞因子HOXA9作为候选基因进行了研究,该基因的缺失会促进对恩杂鲁胺的敏感性。癌症基因组数据显示,HOXA9的过表达与晚期前列腺癌的不良预后和特征相关。在细胞培养中,HOXA9 缺失会使细胞对恩杂鲁胺敏感,而过表达则会导致恩杂鲁胺耐药。将HOXA9抑制剂DB818与恩杂鲁胺联合使用可产生协同作用。这证明了我们的 CRISPR 筛选数据在发现治疗恩杂鲁胺耐药前列腺癌的新方法方面的实用性。
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引用次数: 0
Discovery of Transcription Factors Involved in the Maintenance of Resident Vascular Endothelial Stem Cell Properties. 发现参与维持驻留血管内皮干细胞特性的转录因子。
IF 3.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 Epub Date: 2024-01-29 DOI: 10.1080/10985549.2023.2297997
Hirotaka Konishi, Fitriana N Rahmawati, Naoki Okamoto, Keigo Akuta, Koichi Inukai, Weizhen Jia, Fumitaka Muramatsu, Nobuyuki Takakura

A resident vascular endothelial stem cell (VESC) population expressing CD157 has been identified recently in mice. Herein, we identified transcription factors (TFs) regulating CD157 expression in endothelial cells (ECs) that were associated with drug resistance, angiogenesis, and EC proliferation. In the first screening, we detected 20 candidate TFs through the CD157 promoter and gene expression analyses. We found that 10 of the 20 TFs induced CD157 expression in ECs. We previously reported that 70% of CD157 VESCs were side population (SP) ECs that abundantly expressed ATP-binding cassette (ABC) transporters. Here, we found that the 10 TFs increased the expression of several ABC transporters in ECs and increased the proportion of SP ECs. Of these 10 TFs, we found that six (Atf3, Bhlhe40, Egr1, Egr2, Elf3, and Klf4) were involved in the manifestation of the SP phenotype. Furthermore, the six TFs enhanced tube formation and proliferation in ECs. Single-cell RNA sequence data in liver ECs suggested that Atf3 and Klf4 contributed to the production of CD157+ VESCs in the postnatal period. We concluded that Klf4 might be important for the development and maintenance of liver VESCs. Our work suggests that a TF network is involved in the differentiation hierarchy of VESCs.

最近在小鼠体内发现了表达CD157的常驻血管内皮干细胞(VESC)群体。在此,我们发现了调节内皮细胞(EC)中CD157表达的转录因子(TFs),它们与耐药性、血管生成和EC增殖有关。在第一次筛选中,我们通过 CD157 启动子和基因表达分析发现了 20 个候选 TF。我们发现,20 个 TFs 中有 10 个能诱导 EC 中 CD157 的表达。我们以前曾报道过,70%的CD157 VESC是侧群(SP)EC,它们大量表达ATP结合盒(ABC)转运体。在这里,我们发现这 10 种 TF 增加了 EC 中多种 ABC 转运体的表达,并提高了 SP EC 的比例。在这10个TFs中,我们发现有6个(Atf3、Bhlhe40、Egr1、Egr2、Elf3和Klf4)参与了SP表型的表现。此外,这六种TFs还增强了ECs中管的形成和增殖。肝脏ECs的单细胞RNA序列数据表明,Atf3和Klf4有助于在出生后产生CD157+ VESCs。我们的结论是,Klf4可能对肝脏VESCs的发育和维持很重要。我们的研究表明,TF网络参与了VESCs的分化层次。
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引用次数: 0
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