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Optimal invariant sets for atomistic machine learning 原子机器学习的最优不变量集
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-17 DOI: 10.1038/s41524-025-01948-0
Alice E. A. Allen, Emily Shinkle, Roxana Bujack, Nicholas Lubbers
The representation of atomic configurations for machine learning models has led to numerous sets of descriptors. However, many descriptor sets are incomplete and/or functionally dependent. Incomplete sets cannot faithfully represent atomic environments. Yet complete constructions often suffer from a high degree of functional dependence, where some descriptors are functions of others. These redundant descriptors do not improve discrimination between atomic environments. We employ pattern recognition techniques to remove dependent descriptors to produce the smallest possible set that satisfies completeness. We apply this in two ways: First, we refine an existing description, the atomic cluster expansion. Second, we augment an incomplete construction, yielding a new message-passing neural network architecture that can recognize up to 5-body patterns. This architecture shows strong accuracy on state-of-the-art benchmarks while retaining low computational cost. Our results demonstrate the utility of this strategy to optimize descriptor sets across a range of descriptors and application datasets.
机器学习模型的原子配置表示导致了大量的描述符集。然而,许多描述符集是不完整的和/或功能相关的。不完全集不能忠实地表示原子环境。然而,完整的结构经常遭受高度的功能依赖,其中一些描述符是其他描述符的功能。这些冗余的描述符并不能改善原子环境之间的区别。我们使用模式识别技术去除依赖描述符,以产生满足完备性的最小可能集。我们以两种方式应用它:首先,我们改进现有的描述,即原子簇扩展。其次,我们增强了一个不完整的结构,产生了一个新的消息传递神经网络架构,可以识别多达5个体的模式。该体系结构在最先进的基准测试中显示出很强的准确性,同时保持较低的计算成本。我们的结果证明了该策略在一系列描述符和应用程序数据集上优化描述符集的实用性。
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引用次数: 0
phaser: a unified and extensible framework for fast electron ptychography 相位器:一个统一的和可扩展的框架,用于快速电子印刷
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-17 DOI: 10.1038/s41524-026-01956-8
Colin Gilgenbach, Menglin Zhu, James M. LeBeau
We present phaser, an open-source Python package that provides a unified interface to both conventional and autodifferentiation-based ptychographic algorithms. Features such as mixed-state probe, probe position correction, and multislice ptychography make experimental reconstructions practical and robust. Reconstructions are specified in a declarative format and can be run from a command line, Jupyter notebook, or web interface. Multiple computational backends are supported to provide maximum flexibility. We report reconstruction success for a variety of experimental datasets, and detail the effects of regularization on convergence and reconstruction quality. Reconstruction speed is benchmarked for single-slice and multislice reconstructions and compared to state-of-the-art packages. The software promises to speed the application and development of ptychographic methods for materials science.
我们介绍了phaser,一个开源的Python包,它提供了一个统一的接口,既传统的和基于自动区分的平面算法。混合状态探针、探针位置校正和多层平面成像等特性使实验重建具有实用性和鲁棒性。重构以声明式格式指定,可以从命令行、Jupyter笔记本或web界面运行。支持多个计算后端,以提供最大的灵活性。我们报告了各种实验数据集的重建成功,并详细介绍了正则化对收敛和重建质量的影响。重建速度是单层和多层重建的基准,并与最先进的软件包进行比较。该软件有望加速材料科学中触电学方法的应用和发展。
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引用次数: 0
Short bond evaluation method for rapidly assessing the generalization ability of deep neural network potential function models and its effectiveness verification 快速评估深度神经网络势函数模型泛化能力的短键评价方法及其有效性验证
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-16 DOI: 10.1038/s41524-026-01957-7
Xiumin Chen, Yunmin Chen, Jie Zhou
When training deep neural networks using first-principles calculation data to obtain potential functions for molecular dynamics simulations, extensive model capability evaluation work is required. However, the commonly used validation sets for model evaluation are limited by the high cost of obtaining first-principles data, making it difficult to comprehensively assess the strong generalization ability of deep neural network trained models, which requires coverage of a much larger space than the training set samples. This manuscript proposes a short bond evaluation method and conducts evaluation experiments using this method and the self-consistent field labeling evaluation method on multiple tasks under different structures generalization in two complex reaction systems. It also performs correlation analysis between the results of the two methods to validate and explain the applicability and effectiveness of the proposed method. Although this method has the necessary and insufficient characteristics, the results show that this method can accelerate the assessment of model generalization capabilities while maintaining the reliability of the evaluation results. Moreover, this method can particularly accelerate the high-accuracy filter of poor-performing models, thereby helping to improve the convergence speed during the model training iteration process. At the same time, it achieves a significant reduction in evaluation costs.
当使用第一性原理计算数据训练深度神经网络以获得分子动力学模拟的势函数时,需要进行大量的模型能力评估工作。然而,常用的用于模型评估的验证集受到获得第一性原理数据的高成本的限制,难以全面评估深度神经网络训练模型强大的泛化能力,这需要覆盖比训练集样本大得多的空间。本文提出了一种短键评价方法,并将该方法与自一致场标记评价方法在两种复杂反应体系中不同结构概化下的多任务上进行了评价实验。并对两种方法的结果进行相关性分析,验证和说明所提方法的适用性和有效性。尽管该方法具有必要和不足的特点,但结果表明,该方法可以在保持评估结果可靠性的同时加快模型泛化能力的评估。此外,该方法可以特别加快对性能较差模型的高精度滤波,从而有助于提高模型训练迭代过程中的收敛速度。同时,大大降低了评估成本。
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引用次数: 0
A non-orthogonal representation for materials based on chemical similarity 基于化学相似性的材料的非正交表示
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-15 DOI: 10.1038/s41524-025-01916-8
Tiago F. T. Cerqueira, Haichen Wang, Silvana Botti, Miguel A. L. Marques
We present a novel approach to generate a fingerprint for crystalline materials that balances efficiency for machine processing and human interpretability, allowing its application in both machine learning inference and understanding of structure-property relationships. Our proposed material encoding has two components: one representing the crystal structure and the other characterizing the chemical composition, which we call Pettifor embedding. For the latter, we construct a non-orthogonal space where each axis represents a chemical element and where the angle between the axes quantifies a measure of the similarity between them. The chemical composition is then defined by the point on the unit sphere in this non-orthogonal space. We show that the Pettifor embeddings systematically outperform other commonly used elemental embeddings in compositional machine learning models. Using the Pettifor embeddings to define a distance metric and applying dimension reduction techniques, we construct a two-dimensional global map of the space of thermodynamically stable crystalline compounds. Despite their simplicity, such maps succeed in providing a physical separation of material classes according to basic physical properties.
我们提出了一种为晶体材料生成指纹的新方法,该方法平衡了机器处理效率和人类可解释性,允许其应用于机器学习推理和结构-性质关系的理解。我们提出的材料编码有两个组成部分:一个代表晶体结构,另一个表征化学成分,我们称之为Pettifor嵌入。对于后者,我们构建了一个非正交空间,其中每个轴代表一个化学元素,轴之间的角度量化了它们之间的相似性。然后用这个非正交空间中单位球上的点来定义化学成分。我们表明,Pettifor嵌入在组合机器学习模型中系统地优于其他常用的元素嵌入。利用Pettifor嵌入定义距离度量并应用降维技术,我们构建了热力学稳定晶体化合物空间的二维全局图。尽管它们很简单,但这种映射成功地根据基本物理性质提供了材料类的物理分离。
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引用次数: 0
Quantifying the phase diagram and Hamiltonian of S = 1/2 kagome antiferromagnets: bridging theory and experiment S = 1/2 kagome反铁磁体相图和哈密顿量的量化:桥接理论与实验
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-15 DOI: 10.1038/s41524-026-01959-5
Shengtao Jiang, Arthur C. Campello, Wei He, Jiajia Wen, Daniel M. Pajerowski, Young S. Lee, Hong-Chen Jiang
Spin-1/2 kagome antiferromagnets are leading candidates for realizing quantum spin liquid (QSL) ground states. While QSL ground states are predicted for the pure Heisenberg model, understanding the robustness of the QSL to additional interactions that may be present in real materials is a forefront question in the field. Here we employ large-scale density-matrix renormalization group simulations to investigate the effects of next-nearest neighbor exchange couplings J2 and Dzyaloshinskii-Moriya interactions D, which are relevant to understanding the prototypical kagome materials herbertsmithite and Zn-barlowite. By utilizing clusters as large as XC12 and extrapolating the results to the thermodynamic limit, we precisely delineate the scope of the QSL phase, which remains robust across an expanded parameter range of J2 and D. Direct comparison of the simulated static and dynamic spin structure factors with inelastic neutron scattering reveals the parameter space of the Hamiltonians for herbertsmithite and Zn-barlowite, and, importantly, provides compelling evidence that both materials exist within the QSL phase. These results establish a powerful convergence of theory and experiment in this most elusive state of matter.
自旋1/2 kagome反铁磁体是实现量子自旋液体(QSL)基态的主要候选体。虽然纯海森堡模型预测了QSL基态,但了解QSL对实际材料中可能存在的额外相互作用的鲁棒性是该领域的前沿问题。本文采用大规模密度矩阵重正化群模拟研究了次近邻交换耦合J2和Dzyaloshinskii-Moriya相互作用D的影响,这与理解典型的kagome材料herbertsmithite和zn - barlowitite有关。通过利用XC12大小的团簇并将结果外推到热力学极限,我们精确地描绘了QSL相的范围,在J2和d的扩展参数范围内保持鲁棒性。将模拟的静态和动态自旋结构因子与非弹性中子散射直接比较,揭示了herbertsmithite和zn - barlowitite的哈密顿量的参数空间,重要的是,提供了令人信服的证据,证明这两种材料都存在于QSL阶段。这些结果在这个最难以捉摸的物质状态中建立了理论和实验的强大融合。
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引用次数: 0
Combining feature-based approaches with graph neural networks and symbolic regression for synergistic performance and interpretability 将基于特征的方法与图神经网络和符号回归相结合,以提高协同性能和可解释性
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-15 DOI: 10.1038/s41524-025-01938-2
Rogério Almeida Gouvêa, Pierre-Paul De Breuck, Tatiane Pretto, Gian-Marco Rignanese, Marcos José Leite Santos
This study introduces MatterVial, an innovative hybrid framework for feature-based machine learning in materials science. MatterVial expands the feature space by integrating latent representations from a diverse suite of pretrained graph-neural network (GNN) models—including structure-based (MEGNet), composition-based (ROOST), and equivariant (ORB) graph networks—with computationally efficient, GNN-approximated descriptors and novel features from symbolic regression. Our approach combines the chemical transparency of traditional feature-based models with the predictive power of deep learning architectures. When augmenting the feature-based model MODNet on Matbench tasks, this method yields significant error reductions and elevates its performance to be competitive with, and in several cases superior to, state-of-the-art end-to-end GNNs, with accuracy increases exceeding 40% for multiple tasks. An integrated interpretability module, employing surrogate models and symbolic regression, decodes the latent GNN-derived descriptors into explicit, physically meaningful formulas. This unified framework advances materials informatics by providing a high-performance, transparent tool that aligns with the principles of explainable AI, paving the way for more targeted and autonomous materials discovery.
本研究介绍了MatterVial,这是一种用于材料科学中基于特征的机器学习的创新混合框架。MatterVial通过整合来自各种预训练的图神经网络(GNN)模型的潜在表示(包括基于结构的(MEGNet)、基于成分的(ROOST)和等变(ORB)图网络)、计算效率高的、GNN近似的描述符和来自符号回归的新特征,扩展了特征空间。我们的方法结合了传统基于特征的模型的化学透明度和深度学习架构的预测能力。当在matlab任务上增加基于特征的模型MODNet时,该方法可以显著降低误差,并提高其性能,与最先进的端到端GNNs竞争,在某些情况下优于最先进的端到端GNNs,多个任务的精度提高超过40%。集成的可解释性模块,采用代理模型和符号回归,将潜在的gnn衍生描述符解码为明确的,物理上有意义的公式。这个统一的框架通过提供符合可解释人工智能原则的高性能、透明工具来推进材料信息学,为更有针对性和自主的材料发现铺平了道路。
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引用次数: 0
Impact of electronic correlations on the superconductivity of high-pressure CeH9 电子相关对高压CeH9超导性的影响
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-14 DOI: 10.1038/s41524-025-01889-8
Siyu Chen, Yao Wei, Bartomeu Monserrat, Jan M. Tomczak, Samuel Poncé
Rare-earth superhydrides have attracted considerable attention because of their high critical superconducting temperature under extreme pressures. They are known to have localized valence electrons, implying strong electronic correlations. However, such many-body effects are rarely included in first-principles studies of rare-earth superhydrides because of the complexity of their high-pressure phases. In this work, we use a combined density functional theory and dynamical mean-field theory approach to study both electrons and phonons in the prototypical rare-earth superhydride CeH9, shedding light on the impact of electronic correlations on its critical temperature for phonon-mediated superconductivity. Our findings indicate that electronic correlations result in a larger electronic density at the Fermi level, a bigger superconducting gap, and softer vibrational modes associated with hydrogen atoms. Together, the inclusion of these correlation signatures increases the Migdal-Eliashberg superconducting critical temperature from 47 K to 96 K, close to the measured 95 K. Our results reconcile experimental observations and theoretical predictions for CeH9 and herald a path towards the quantitative modeling of phonon-mediated superconductivity for interacting electron systems.
稀土超氢化物因其在极端压力下具有较高的临界超导温度而引起了人们的广泛关注。已知它们有定域价电子,这意味着有很强的电子相关性。然而,由于高压相的复杂性,这种多体效应很少包括在稀土超氢化物的第一性原理研究中。在这项工作中,我们使用密度泛函理论和动态平均场理论相结合的方法研究了原型稀土超氢化物CeH9中的电子和声子,揭示了电子相关对其声子介导超导临界温度的影响。我们的研究结果表明,电子相关导致费米能级上更大的电子密度,更大的超导间隙,以及与氢原子相关的更软的振动模式。总之,这些相关特征的包含将米格达尔-埃利亚什伯格超导临界温度从47 K提高到96 K,接近测量的95 K。我们的研究结果与CeH9的实验观察和理论预测相一致,并为相互作用电子系统声子介导的超导性的定量建模指明了道路。
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引用次数: 0
Graph embedding tensor: unifying topological description, symmetry detection, and structure generation for two-dimensional carbon allotropes 图嵌入张量:统一拓扑描述,对称检测,和二维碳同素异形体的结构生成
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-14 DOI: 10.1038/s41524-025-01932-8
Lilac Macmillan, Eduardo Costa Girão, Vincent Meunier
We introduce the embedding tensor Φ, a rank-3, purely integer tensor that elevates faces and edges to the same footing as vertices to provide a unique, coordinate-free representation of any three-connected two-dimensional carbon lattice. Defined by the incidence of vertices, edges, and polygonal faces, Φ obeys simple summation rules derived from Euler characteristics. Casting Φ into a flag graph enables exact, tolerance-free identification of wallpaper symmetries. Building on this algebraic framework, we develop an iterative add-dimer search that generates all structures with NF faces from all crystals with NF − 1 faces, while automatically discarding duplicates via tensor isomorphism and spotting non-primitive cells through symmetry checks. Exploiting symmetry keeps the combinatorial growth of dimer insertions tractable even for NF > 5, transforming an otherwise exponential search into a practically feasible approach for high-throughput exploration. Once candidate topologies are enumerated, approximate real-space coordinates and lattice vectors can be reconstructed analytically from Φ and sparse crossing matrices, providing initial geometries for electronic or vibrational calculations. The method delivers an end-to-end pipeline from exhaustive, symmetry-aware enumeration to metadata tagging and coordinate generation, while requiring only integer arithmetic.
我们引入嵌入张量Φ,这是一个秩3的纯整数张量,它将面和边提升到与顶点相同的位置,从而为任何三连通的二维碳晶格提供独特的、无坐标的表示。由顶点、边和多边形面的关联定义,Φ遵循源自欧拉特征的简单求和规则。将Φ转换成一个标志图,可以精确地、无偏差地识别墙纸的对称性。在这个代数框架的基础上,我们开发了一个迭代的加法二聚体搜索,从所有具有NF - 1面的晶体中生成具有NF面的所有结构,同时通过张量同构自动丢弃重复的结构,并通过对称检查发现非原始细胞。利用对称性使二聚体插入的组合增长即使对于NF bbb5也是可处理的,将指数搜索转化为高通量探索的实际可行方法。一旦候选拓扑被枚举,近似的实空间坐标和晶格向量可以从Φ和稀疏交叉矩阵解析重建,为电子或振动计算提供初始几何。该方法提供了一个端到端的管道,从详尽的、对称感知的枚举到元数据标记和坐标生成,同时只需要整数运算。
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引用次数: 0
Probing entropic control of stacking phase preference in layered oxide cathodes for sodium-ion batteries via machine-learning potentials 基于机器学习电位的钠离子电池层状氧化物阴极堆叠相偏好熵控制研究
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-14 DOI: 10.1038/s41524-025-01954-2
Liang-Ting Wu, Zhong-Lun Li, Shih-Ying Yen, Payam Kaghazchi, Jyh-Chiang Jiang
High-entropy layered oxides are promising sodium-ion battery (SIB) cathodes, yet the fundamental role of conformational entropy in stacking phase preference remains unclear. Here, we combine density functional theory (DFT), ab initio molecular dynamics (AIMD), and a fine-tuned CHGNet machine-learning interatomic potential (MLIP) to investigate representative high-entropy (Na0.8Ni0.2Fe0.2Co0.2Mn0.2Ti0.2O2) and low-entropy (Na0.8Mn0.6Co0.4O2) layered oxides in both O3 and P2 phases. A three-stage Monte Carlo sampling strategy was developed to explore transition-metal arrangements, Na/vacancy distributions, and representative low-energy conformations. The fine-tuned CHGNet achieved near-DFT accuracy while enabling large-scale sampling at orders of magnitude lower cost. Our analyses reveal that high-entropy oxides exhibit stronger Na–TMO2 interactions, broader O–TM bond length distributions, and smaller interlayer distance ratios compared with their low-entropy counterparts. These structural features favor O3-phase stabilization in cases where conventional ionic-potential descriptors are insufficient to clearly distinguish between O3- and P2-type layered oxides. Bond-length analyses further indicate that Jahn–Teller distortions in Mn are mitigated in high-entropy oxides, contributing to enhanced structural stability. This study establishes conformational entropy as a decisive factor, alongside Na ionic and cationic potentials, in governing stacking phase stability, and highlights the power of MLIP-accelerated modeling for exploring high-entropy materials and guiding the rational design of next-generation SIB cathodes.
高熵层状氧化物是很有前途的钠离子电池(SIB)阴极,但构象熵在堆叠相偏好中的基本作用尚不清楚。在这里,我们结合密度泛函理论(DFT),从头算分子动力学(AIMD)和微调的CHGNet机器学习原子间势(MLIP)来研究O3和P2相中具有代表性的高熵(Na0.8Ni0.2Fe0.2Co0.2Mn0.2Ti0.2O2)和低熵(Na0.8Mn0.6Co0.4O2)层状氧化物。开发了一种三阶段蒙特卡罗采样策略来探索过渡金属排列,Na/空位分布和具有代表性的低能构象。经过微调的CHGNet实现了接近dft的精度,同时以更低的成本实现了大规模采样。我们的分析表明,与低熵氧化物相比,高熵氧化物表现出更强的Na-TMO2相互作用,更宽的O-TM键长分布和更小的层间距离比。在常规离子电位描述符不足以明确区分O3-和p2型层状氧化物的情况下,这些结构特征有利于O3相稳定。键长分析进一步表明,Mn中的Jahn-Teller扭曲在高熵氧化物中得到缓解,有助于增强结构稳定性。本研究确定了构象熵与钠离子和阳离子势一起是控制堆叠相稳定性的决定性因素,并强调了mlip加速建模在探索高熵材料和指导下一代SIB阴极合理设计方面的作用。
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引用次数: 0
Importance of ligand on-site interactions for the description of Mott-insulators in DFT+DMFT 配体现场相互作用对DFT+DMFT中mott -绝缘子描述的重要性
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-01-13 DOI: 10.1038/s41524-025-01928-4
Alberto Carta, Anwesha Panda, Claude Ederer
Calculations combining density functional theory (DFT) and dynamical mean-field theory (DMFT) for transition metal (TM) oxides and similar compounds usually focus on improving the description of the TM d states. Here, we emphasize the importance of also accounting for corrections of the ligand p states. We demonstrate that focusing exclusively on improving the description of the TM d states results in difficulties to obtain the correct insulating behavior for a variety of materials, and requires to use values for the local interaction parameters that are inconsistent with values obtained using, e.g., the constrained random phase approximation (cRPA). We demonstrate that, to a large part, these inconsistencies arise from using local/semi-local DFT as starting point for computing interaction parameters, and we show that applying a simple empirical correction to the low energy states not included in the correlated subspace results in improved values for the interaction parameters that then allow to obtain the correct insulating behavior. Moreover, we show that applying an approximate but realistic Hartree-Fock-like correction specifically to the O p orbitals, when they are explicitly included in the DMFT subspace, significantly improves the quantitative accuracy of the DFT+DMFT description for prototypical Mott insulators, including LaTiO3, LaVO3, and the perovskite rare-earth nickelates (RNiO3).
结合密度泛函理论(DFT)和动态平均场理论(DMFT)对过渡金属氧化物及类似化合物的计算通常侧重于改善过渡金属氧化物状态的描述。在这里,我们强调考虑配体p态修正的重要性。我们证明,只关注于改善TM d状态的描述会导致难以获得各种材料的正确绝缘行为,并且需要使用与使用约束随机相位近似(cRPA)等方法获得的值不一致的局部相互作用参数值。我们证明,在很大程度上,这些不一致源于使用局部/半局部DFT作为计算相互作用参数的起点,并且我们表明,对不包括在相关子空间中的低能态应用简单的经验校正可以改善相互作用参数的值,从而允许获得正确的绝缘行为。此外,我们表明,当O p轨道明确包含在DMFT子空间中时,对它们应用近似但现实的Hartree-Fock-like校正,可以显著提高DFT+DMFT描述原型Mott绝缘体(包括LaTiO3, LaVO3和钙钛矿稀土镍酸盐(RNiO3))的定量精度。
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引用次数: 0
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