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2016 32nd Southern Biomedical Engineering Conference (SBEC)最新文献

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Novel Clustering Method towards Identification of Activation Points for Atrial Fibrillation 心房颤动激活点识别的新聚类方法
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.25
Limeng Pu, Hsiao-Chun Wu, J. Mckinnie
In this paper, a novel approach to locate the activation points of atrial fibrillation (AF) is proposed. This new method is built upon machine learning, where common parameters, such as dominant frequency, first harmonic frequency, etc., are adopted. Features are extracted from the original electrocardiography (ECG) and then clustering is performed to classify the ECG signals into two groups, namely activation and nonactivation points. The experimental results are compared with those from the state-of-the-art system, Topera, used in East Jefferson General Hospital nowadays.
本文提出了一种定位心房颤动(AF)激活点的新方法。这种新方法建立在机器学习的基础上,采用了常用的参数,如主频率、一次谐波频率等。从原始心电图(ECG)中提取特征,然后进行聚类,将ECG信号分为激活点和非激活点两组。实验结果与目前东杰佛逊综合医院使用的最先进的Topera系统进行了比较。
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引用次数: 0
Classification of Pre-ictal and Interictal Periods Based on EEG Frequency Features in Epilepsy 基于脑电图频率特征的癫痫发作前和发作间期分类
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.9
Bharat Karumuri, I. Vlachos, Rui Liu, J. Adkinson, L. Iasemidis
A seizure prediction system has the potential to significantly help patients with epilepsy. For a seizure forecasting system to work effectively, computational algorithms must reliably identify periods with high probability of seizure occurrence. We herein report results of a classification approach based on machine learning of EEG features in the frequency domain and aimed at differentiating between pre-ictal (close to seizure onsets) and interictal (far away from seizures onset) periods in long-term intracranial EEG recordings from the brain of 5 epileptic dogs. Evaluation of performance by the area under the ROC curve ranged from 0.84 to 0.96 in four dogs, while for the fifth dog was considerably less (0.55), resulting to a global value of 0.87 across dogs. These results offer supporting evidence that seizures may be predictable with a proper analysis of the EEG.
癫痫发作预测系统有可能极大地帮助癫痫患者。为了使癫痫发作预测系统有效地工作,计算算法必须可靠地识别癫痫发作高概率的时间段。本文报告了一种基于频域EEG特征机器学习的分类方法的结果,该方法旨在区分5只癫痫犬的长期颅内脑电图记录中的发作前(接近发作)和发作间(远离发作)时期。4只狗的ROC曲线下面积评价范围从0.84到0.96,而第五只狗的ROC曲线下面积评价范围要小得多(0.55),因此所有狗的总体值为0.87。这些结果提供了支持性证据,表明癫痫发作可以通过适当的脑电图分析来预测。
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引用次数: 7
Development of an in-vitro High-Throughput Screening Assay for the Identification of Modulators of the Blood-Brain Barrier Endothelium Integrity 血脑屏障内皮完整性调节剂体外高通量筛选试验的建立
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.54
Sweilem B. Al Rihani, Hisham Qosa, Loqman A. Mohamed, Yazan S. Batarseh, J. Keller, A. Kaddoumi
The blood-brain barrier (BBB) controls the content of brain interstitial fluid due to the presence of high-resistance tight junction proteins between the endothelial cells of brain capillaries. Several models using different cell-lines were developed to study the BBB biology, these models were complex and their use for high-throughput screening (HTS) has proven to be challenging. Therefore, we developed an in-vitro BBB model that is practical and reliable for HTS. The mouse brain endothelial cells (bEnd3) grown on 96-well plate inserts were upgraded and optimized for HTS assay. Using Lucifer Yellow (LY) permeation assay, 3 different compounds libraries that include 3000 compounds were screened for hits that have the potential to modulate the BBB model integrity. To evaluate the model ability to identify compounds that increase LY permeation, mannitol was used as a positive control for disruptors. The model performance in this assay was high with Z' factor above 0.5 and high S/N and S/B ratios. Alternatively, hydrocortisone was used as a positive control for compounds that enhance the barrier function as it is known to improve endothelium tightness. The Z' factor determined with hydrocortisone was 0.3 with lower S/N and S/B ratios compared to mannitol .The primary screen has identified several hundred of modulators. The secondary screen could identify 13 compounds as potent enhancers of the monolayer integrity with EC50 values less than 10 μM. In conclusion, an HTS-BBB model was developed and used for compounds screening to identify compelling hits for further evaluation for their effect on the BBB.
由于脑毛细血管内皮细胞之间存在高阻力紧密连接蛋白,血脑屏障(BBB)控制着脑间质液的含量。使用不同细胞系建立了几种模型来研究血脑屏障生物学,这些模型非常复杂,并且它们用于高通量筛选(HTS)已被证明具有挑战性。因此,我们开发了一种实用可靠的体外血脑屏障模型。对96孔板上生长的小鼠脑内皮细胞(bEnd3)进行了升级和优化,以用于HTS试验。利用Lucifer Yellow (LY)渗透试验,筛选了3种不同的化合物库,其中包括3000种化合物,以寻找可能调节血脑屏障模型完整性的化合物。为了评估模型识别增加LY渗透的化合物的能力,甘露醇被用作干扰物的阳性对照。模型性能良好,Z′因子大于0.5,S/N和S/B比较高。另外,氢化可的松被用作增强屏障功能的化合物的阳性对照,因为已知它可以改善内皮细胞的紧密性。与甘露醇相比,氢化可的松测定的Z′因子为0.3,S/N和S/B比较低。二级筛选筛选出13种EC50值小于10 μM的强效单分子膜完整性增强剂。总之,开发了HTS-BBB模型,并将其用于化合物筛选,以确定引人注目的撞击点,以进一步评估其对BBB的影响。
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引用次数: 0
mHealth Musculoskeletal Applications: Bluetooth Low Energy Devices and Android 移动健康肌肉骨骼应用:低功耗蓝牙设备和安卓
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.61
J. Tilles, A. Shaporev, V. Reukov
Plantar Fasciitis is a common condition involving inflammation of the plantar fascia, causing heel pain and reduced mobility. Typical treatment methods for plantar fasciitis include medications (NSAIDs), exercises, physical therapy, and surgery. Mobile Health (mHealth) technologies stand to improve care for plantar fasciitis via daily monitoring and by addressing barriers to patient adherence with treatment programs. The ability to closely monitor treatment also gives opportunities for curation that were previously unavailable. Pain and inflammation can be decreased by following a simple home exercise routine of stretches specific to the plantar fascia [1]. Our team has developed a system for assistance with monitoring of home exercise program for treatment of plantar fasciitis. The system interfaces Bluetooth Low Energy (BLE) devices with smartphones to send and receive accelerometer and other sensory data, and an accompanying app to be used for at home monitoring and analysis of physical therapy exercises which have been shown to help with plantar fasciitis [2]. Such system can be used to track movement, amplitude, angle, pressure, stretch, and number of repetitions, and overall improve patient adherence to a Home Exercise Program and involvement in treatment. Increased self-monitoring has been shown to directly influence and increase behavior change of patients. In order to increase patient adherence to a prescribed routine, awareness of a behavior and the consistent tracking of its implementation and progress over time are effective [3]. Modern BLE devices are very energy efficient and can work throughout the course of a day, making them an apt choice for a home treatment program. The accompanying app receives, aggregates, and analyzes data from the BLE sensor, and provides actionable feedback to users and clinicians. By increasing patient adherence and speeding up healing, this mHealth system will improve patient outcomes regarding treatment of plantar fasciitis, and also decrease cost of treatment.
足底筋膜炎是一种常见的足底筋膜炎,引起足跟疼痛和活动能力降低。足底筋膜炎的典型治疗方法包括药物(非甾体抗炎药)、运动、物理治疗和手术。移动医疗(mHealth)技术通过日常监测和解决患者坚持治疗方案的障碍,有望改善足底筋膜炎的护理。密切监测治疗的能力也提供了以前无法获得的管理机会。疼痛和炎症可以通过简单的针对足底筋膜的家庭运动来减轻[1]。我们的团队已经开发了一个系统,以协助监测家庭锻炼计划足底筋膜炎的治疗。该系统将蓝牙低功耗(BLE)设备与智能手机连接,以发送和接收加速度计和其他感官数据,并附带一个应用程序,用于在家监测和分析物理治疗练习,这些练习已被证明有助于足底筋膜炎[2]。该系统可用于跟踪运动、幅度、角度、压力、拉伸和重复次数,并整体提高患者对家庭锻炼计划的依从性和对治疗的参与。加强自我监控已被证明可以直接影响和促进患者的行为改变。为了提高患者对规定常规的依从性,对行为的认识以及对其实施和进展的持续跟踪是有效的[3]。现代BLE设备非常节能,可以全天工作,使其成为家庭治疗计划的合适选择。附带的应用程序接收、汇总和分析来自BLE传感器的数据,并向用户和临床医生提供可操作的反馈。通过提高患者的依从性和加速愈合,该移动健康系统将改善足底筋膜炎治疗的患者结果,并降低治疗成本。
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引用次数: 3
Connectivity Analysis for Epileptogenic Focus Localization 致痫灶定位的连通性分析
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.38
J. Adkinson, Rui Liu, I. Vlachos, L. Iasemidis
The measure of Generalized Partial Directed Coherence (GPDC) and surrogate data analysis of intracranial electroencephalographic (iEEG) signals can be used to determine the functional connections between brain sites. Characteristics of the nodes of the thus derived network during seizures from 9 patients with temporal lobe epilepsy were studied using centrality measures (Degree, Eigenvector, Katz, PageRank, and Betweenness). The electrode sites with maximum Katz and degree centralities showed close association with the epileptogenic focus during seizures. These results indicate that connectivity analysis of the EEG can contribute to the accurate localization of the epileptogenic focus in patients with focal epilepsy.
广义部分定向相干性(GPDC)测量和颅内脑电图(iEEG)信号的替代数据分析可用于确定脑部位之间的功能连接。采用中心性测量(Degree、Eigenvector、Katz、PageRank和betweness)研究了9例颞叶癫痫患者癫痫发作时由此衍生的网络节点的特征。在癫痫发作时,具有最大Katz和度中心性的电极位点与致痫灶密切相关。这些结果表明,脑电图的连通性分析有助于局灶性癫痫患者的致痫灶准确定位。
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引用次数: 0
PEGylation Enhances the Oral Bioavailability of γ-Tocotrienol Isomer of Vitamin E 聚乙二醇化提高维生素E -生育三烯醇异构体的口服生物利用度
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.26
Ahmed Abu Fayyad, Mohammad M. Kamal, A. Kaddoumi, S. Alqahtani, S. Nazzal
Objective: To Synthesize and characterize PEGylated γ-T3 with m-PEG molecular weights of 350 (γ-T3PGS 350) and 1000 (γ-T3PGS 1000) and to Determine the oral bioavailability of the PEGylated γ-T3 in rats. Methods: γ-T3 was extracted from a 500 g batch of TocotrolTM L50P. γ-T3PGS 350 and γ-T3PGS 1000 were synthesized by a simple single ring-opening of half acid ester precursor, followed by controlled coupling to the terminally methylated PEG. Succination and subsequent PEGylation of γ -T3 were confirmed by HPLC, MS, and 1H-NMR studies. The effect of PEGylation on the oral bioavailability was tested in rats. Results: The succination of γ-T3 was confirmed by the appearance of the ethyl protons of the succinate at 2.75-2.86 ppm and the disappearance of the proton chemical shift from the hydroxyl group of γ-T3 at 4.7 ppm. Subsequent PEGylation was confirmed by the chemical shift at 4.23 ppm, which corresponds to the protons of the ethylene group of PEG that is directly linked to γ-T3S, and confirmed by MS and HPLC. Thee most interesting is that PEGylation significantly enhanced the oral bioavailability of γ-T3 as compared with regular formula and no significant difference was observed between the two molecular variants of mPEG 350 or mPEG 1000. Conclusion: Results from this study suggest that PEGylation of γ-T3 represents a viable platform for the oral and parenteral delivery of γ-T3 for potential use in the prevention of breast cancer.
目的:合成m-PEG分子量分别为350 (γ-T3PGS 350)和1000 (γ-T3PGS 1000)的聚乙二醇化γ-T3并对其进行表征,并测定其在大鼠体内的口服生物利用度。方法:从500 g TocotrolTM L50P中提取γ-T3。γ-T3PGS 350和γ-T3PGS 1000是通过半酸酯前体的单环开环合成的,然后与末端甲基化的PEG进行控制偶联。通过HPLC, MS和1H-NMR研究证实了γ -T3的琥珀化和随后的聚乙二醇化。在大鼠体内测试了聚乙二醇化对口服生物利用度的影响。结果:在2.75 ~ 2.86 ppm时,琥珀酸酯的乙基质子出现,在4.7 ppm时,γ-T3羟基上的质子化学位移消失,证实了γ-T3的琥珀酸化。随后的聚乙二醇化反应通过4.23 ppm的化学位移得到证实,该化学位移对应于与γ-T3S直接连接的聚乙二醇乙烯基团的质子,并通过质谱和HPLC得到证实。最有趣的是,与常规配方相比,聚乙二醇化显著提高了γ-T3的口服生物利用度,而mPEG 350和mPEG 1000两种分子变体之间没有显著差异。结论:本研究结果表明,聚乙二醇化的γ-T3为口服和肠外输送γ-T3提供了一个可行的平台,可能用于预防乳腺癌。
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引用次数: 0
Blow-Spun Nanofibers Embedded with Clay Nanotubes for Biomedical Applications 生物医学应用中嵌入粘土纳米管的吹纺纳米纤维
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.99
C. Boyer, S. Karnik, J. Ambrose, D. Mills
Nanofiber scaffolds have been studied extensively for a variety of biomedical applications. Traditional nanofiber production methods have relied heavily on electrically conductive targets, as seen with electrospinning. The solution blow-spin technique is a new, more rapid and versatile nanofiber production method that allows for fibers to be sprayed onto any surface geometry. Halloysite nanotubes (HNTs) are naturally formed alumina silicate clay tubes, which offer tremendous potential as a multifunctional and cytocompatible nanomaterial. This study showed cellular interactions and responses to blow-spun nanofibers loaded with halloysite nanotubes. Additionally, the study showed antibacterial effects of antibiotic loaded versions. Control poly (lactic-co-glycolide) (PLG) fibers and PLG fibers loaded with HNTs were monitored through scanning and transmission electron microscopy. NucBlue®, Picrosirius Red, Von Kossa, and Alcian Blue assays were used to monitor cell attachment, penetration, and growth on the scaffolds during the course of one week. Drug-loaded versions were tested against Escherichia coli in nutrient broth and agar disc diffusion assays. In the first-ever recorded account, electron micrographs showed that solution blow spinning could encapsulate HNTs within nanofibers networks. Histological assays showed that cellular adhesion and growth was maintained on all nanofiber scaffolds, and drug-loaded versions displayed antibacterial effects. It is suggested that solution blow-spun HNT-nanofibers may have significant potential uses in three-dimensional tissue engineering, medical device nanostructured coatings, wound dressings, and modular drug delivery systems.
纳米纤维支架在各种生物医学领域的应用得到了广泛的研究。传统的纳米纤维生产方法在很大程度上依赖于导电靶,就像静电纺丝一样。溶液吹旋技术是一种新的、更快速、更通用的纳米纤维生产方法,它允许纤维喷射到任何几何形状的表面。高岭土纳米管(HNTs)是天然形成的氧化铝硅酸盐粘土管,作为一种多功能和细胞相容性的纳米材料具有巨大的潜力。本研究显示了细胞对负载高岭土纳米管的吹纺纳米纤维的相互作用和反应。此外,该研究还显示了抗生素负载版本的抗菌作用。通过扫描电镜和透射电镜对对照聚乳酸-羟基乙酸酯(PLG)纤维和负载HNTs的PLG纤维进行了监测。NucBlue®、Picrosirius Red、Von Kossa和Alcian Blue测定法用于监测细胞在支架上的附着、渗透和生长。载药版本在营养肉汤和琼脂盘扩散试验中对大肠杆菌进行了检测。电子显微照片显示,溶液吹丝可以将hnt封装在纳米纤维网络中。组织学分析表明,所有纳米纤维支架均能维持细胞粘附和生长,并且载药版本显示出抗菌作用。研究表明,溶液吹纺hnt纳米纤维在三维组织工程、医疗器械纳米结构涂层、伤口敷料和模块化药物输送系统中具有重要的潜在用途。
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引用次数: 1
Tissue Engineering Nanoclay Composite Scaffolds Composed of Poly-Glycerol Sebacate and Poly-Caprolactone 聚甘油脂酸酯和聚己内酯组成的组织工程纳米粘土复合支架
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.39
D. Chappidi, D. Mills
Tissue engineered scaffolds play an important role in the repair or regeneration of tissues and organs. Scaffolds provide strength, stability and support for cell and tissue development and growth. Common scaffold materials are natural and synthetic polymers. However, in recent years, an intense research effort has been directed towards developing new scaffold polymers and composite materials. Research on composite scaffolds is focused on identifying composites with enhanced mechanical properties, sustained drug-releasing capabilities, and the ability to support tissue development and growth. We produced and characterized a novel nanocomposite polymer scaffold composed of poly-glycerol sebacate (PGS), polycaprolactone (PCL) and halloysite clay nanotubes (HNTs). PGS, a biodegradable elastomer well known for its desirable mechanical properties and PCL, a hydrophobic aliphatic polyester with exceptional biodegradable and biocompatible properties were used in combination with HNTs, aluminosilicate clay nanotubes to form nanocomposite polymer scaffolds. The HNTs can be loaded with drugs of interest and can be used for regenerative medicine, tissue engineering, and controlled drug release. The nanocomposite polymer scaffold thin films were prepared by the solvent casting method. We characterized the morphological, structural, thermal and physical properties of these novel nanocomposite polymer (PGS-PCL-HNT) scaffolds. Analysis of these scaffold characteristics showed enhanced structural and physical properties with the ability to provide sustained drug loading.
组织工程支架在组织和器官的修复或再生中起着重要的作用。支架为细胞和组织的发育和生长提供强度、稳定性和支持。常见的支架材料有天然聚合物和合成聚合物。然而,近年来,人们对新型支架聚合物和复合材料的研究越来越多。复合材料支架的研究主要集中在鉴定具有增强机械性能、持续药物释放能力和支持组织发育和生长能力的复合材料。我们制备并表征了一种由聚甘油癸二酸酯(PGS)、聚己内酯(PCL)和高岭土粘土纳米管(HNTs)组成的新型纳米复合聚合物支架。PGS是一种可生物降解弹性体,以其理想的机械性能而闻名;PCL是一种疏水脂肪族聚酯,具有优异的可生物降解和生物相容性,与HNTs、铝硅酸盐粘土纳米管结合使用,形成纳米复合聚合物支架。hnt可以装载感兴趣的药物,可用于再生医学、组织工程和药物控制释放。采用溶剂浇铸法制备了纳米复合聚合物支架薄膜。我们表征了这些新型纳米复合聚合物(PGS-PCL-HNT)支架的形态、结构、热性能和物理性能。对这些支架特性的分析表明,增强的结构和物理特性具有提供持续药物负载的能力。
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引用次数: 2
Chitosan-Halloysite Hydrogel Drug Delivery System 壳聚糖-高岭土水凝胶给药系统
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.55
Yangyang Luo, D. Mills
In this study, halloysite nanotubes (HNTs) were used to reinforce chitosan hydrogels, and built a biocompatible, biodegradable and sustained drug release system. The biodegradability, stretchability, and surface structure of the chitosan-HNTs hydrogels were studied. Gentamicin was selected as drug release model. Escherichia coli was used to estimate drug efficacy. Results indicate that HNTs significantly improved the gels' mechanical properties while, permitting an extended period of drug release, and without a negative affect on drug efficacy.
本研究以高岭土纳米管(HNTs)作为壳聚糖水凝胶的增强材料,构建了一种生物相容性、生物可降解的药物缓释体系。研究了壳聚糖- hnts水凝胶的生物降解性、拉伸性和表面结构。选择庆大霉素作为药物释放模型。采用大肠杆菌评价药物疗效。结果表明,HNTs显著改善了凝胶的力学性能,同时延长了药物释放时间,并且对药物疗效没有负面影响。
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引用次数: 1
3D Cellular Morphotyping of Scaffold Niches 支架壁龛的三维细胞形态分型
Pub Date : 2016-03-11 DOI: 10.1109/SBEC.2016.58
Stephen J. Florczyk, Mylene Simon, D. Juba, P. Pine, S. Sarkar, Desu Chen, Paula J. Baker, S. Bodhak, Antonio Cardone, M. Brady, P. Bajcsy, C. Simon
There is currently no method for assessing the nature of the cell niche provided by 3D biomaterial scaffolds. Analyzing human bone marrow stromal cell (hBMSC) 3D cell shape in response to different biomaterial scaffolds allowed the 3D cell niche promoted by biomaterial scaffolds to be evaluated. Primary hBMSCs (p5) were seeded (5,000 cells/cm2) in 10 different biomaterial scaffolds and cultured for 24 h. Samples were fixed and stained for actin and nucleus, imaged with confocal microscopy to obtain a 3D volume (z-stack), and 3D cell shape was analyzed with computational approaches. Over 100 cells were imaged per scaffold group (10 scaffold groups, ~1250 cells total), resulting in the largest known 3D stem cell dataset (~135,000 files, ~135 GB) and enabling a high degree of statistical rigor. The images were segmented using an automated algorithm and a final dataset of 969 well-segmented cells were analyzed with 79 shape metrics, which enabled 3D cellular morphotyping of scaffold niches. The variety of scaffolds studied promoted different cell morphologies during culture and there were significant differences in shape metrics, particularly for cell depth, surface area, and volume. This study demonstrated a quantitative approach to analyze 3D cell shape and morphotype and is the largest known study analyzing 3D cell shape in response to a variety of biomaterial scaffolds. The dataset is publically accessible with an online 3D viewer. These results could inform the selection of prospective scaffolds for applications based on 3D cell shape in the tissue of interest.
目前还没有方法来评估由3D生物材料支架提供的细胞生态位的性质。分析人骨髓基质细胞(hBMSC) 3D细胞形态对不同生物材料支架的响应,可以评估生物材料支架促进的3D细胞生态位。将原代hBMSCs (p5)(5000个细胞/cm2)播种于10种不同的生物材料支架中,培养24小时。将样品固定并染色肌动蛋白和细胞核,用共聚焦显微镜成像以获得3D体积(z-stack),并使用计算方法分析3D细胞形状。每个支架组超过100个细胞成像(10个支架组,总计约1250个细胞),从而形成已知最大的3D干细胞数据集(约135,000个文件,约135gb),并实现了高度的统计严谨性。使用自动算法对图像进行分割,并使用79个形状指标分析969个分割良好的细胞的最终数据集,从而实现支架龛的3D细胞形态分型。在培养过程中,所研究的支架的多样性促进了不同的细胞形态,并且在形状指标上存在显著差异,特别是在细胞深度、表面积和体积上。该研究展示了一种定量分析3D细胞形状和形态的方法,是目前已知的最大的分析3D细胞形状对各种生物材料支架响应的研究。该数据集可通过在线3D查看器公开访问。这些结果可以为基于感兴趣组织中的3D细胞形状的应用选择前瞻性支架提供信息。
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引用次数: 1
期刊
2016 32nd Southern Biomedical Engineering Conference (SBEC)
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