Pub Date : 2025-01-17eCollection Date: 2025-01-01DOI: 10.7717/peerj.18621
Stênio Í A Foerster
Body size has always been the focus of several ecological studies due to its undeniable influence on other life-history traits. The conventional representation of body size in arthropods typically relies on linear measures, such as total body length, or the length of specific body parts that can be used to represent body size. While these measures offer simplicity over more complicated alternatives (e.g., dry mass), technical problems persist for arthropods with complex body structures, as is the case for scorpions. In these animals, accurate measurements often require extensive handling, including the stretching of body parts. In light of the difficulties associated with directly measuring total length and carapace length in scorpions (two prevalent proxies for body size in the group), this study evaluates the ability of seven simple linear measurements in predicting length measures of boy size in scorpions under a phylogenetic framework. Predictive equations derived from phylogenetic mixed linear models fitted under Bayesian framework were implemented in custom R functions that can be applied for size prediction in a wide range of scorpions. Overall, accurate predictions of total length and carapace length could be achieved using any of the studied traits as single predictors. However, the most accurate predictions for total length were obtained using the length of metasomal segment V, while the best predictions for carapace length were achieved using telson length. The addition of a secondary predictor had low impact on the quality of the size predictions, indicating that increasing model complexity by incorporating additional predictors is not necessary to achieve accurate size estimates. Technical advantages and limitations associated with each linear measurement are discussed. In conclusion, this study broadens the repertoire of methods available for accurately estimating body size in scorpions, particularly in instances where body size information can only be obtained indirectly through allometric relationships.
{"title":"Body size prediction in scorpions: a phylogenetic comparative examination of linear measurements of individual body parts.","authors":"Stênio Í A Foerster","doi":"10.7717/peerj.18621","DOIUrl":"10.7717/peerj.18621","url":null,"abstract":"<p><p>Body size has always been the focus of several ecological studies due to its undeniable influence on other life-history traits. The conventional representation of body size in arthropods typically relies on linear measures, such as total body length, or the length of specific body parts that can be used to represent body size. While these measures offer simplicity over more complicated alternatives (<i>e.g</i>., dry mass), technical problems persist for arthropods with complex body structures, as is the case for scorpions. In these animals, accurate measurements often require extensive handling, including the stretching of body parts. In light of the difficulties associated with directly measuring total length and carapace length in scorpions (two prevalent proxies for body size in the group), this study evaluates the ability of seven simple linear measurements in predicting length measures of boy size in scorpions under a phylogenetic framework. Predictive equations derived from phylogenetic mixed linear models fitted under Bayesian framework were implemented in custom R functions that can be applied for size prediction in a wide range of scorpions. Overall, accurate predictions of total length and carapace length could be achieved using any of the studied traits as single predictors. However, the most accurate predictions for total length were obtained using the length of metasomal segment V, while the best predictions for carapace length were achieved using telson length. The addition of a secondary predictor had low impact on the quality of the size predictions, indicating that increasing model complexity by incorporating additional predictors is not necessary to achieve accurate size estimates. Technical advantages and limitations associated with each linear measurement are discussed. In conclusion, this study broadens the repertoire of methods available for accurately estimating body size in scorpions, particularly in instances where body size information can only be obtained indirectly through allometric relationships.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18621"},"PeriodicalIF":2.3,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11745135/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009499","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-17eCollection Date: 2025-01-01DOI: 10.7717/peerj.18511
Laymon Ball, Sheila Rodríguez-Machado, Diego Paredes-Burneo, Samantha Rutledge, David A Boyd, David Vander Pluym, Spenser Babb-Biernacki, Austin S Chipps, Rafet Ç Öztürk, Yahya Terzi, Prosanta Chakrabarty
We examined global records of accessible natural history voucher collections (with publicly available data and reliable locality data) for terrestrial and freshwater vascular plants, fungi, freshwater fishes, birds, mammals, and herpetofauna (amphibians and reptiles) and highlight areas of the world that would be considered undersampled and sometimes called 'unexplored' (i.e., have relatively low, or no evidence of, past sampling efforts) under typical Western-scientific descriptions. We also question what 'unexplored' may mean in these contexts and explain how replacing the term in favor of more nuanced phrasing (e.g., 'biodiversity blindspots,' which emphasizes the lack of publicly available data about specimens) can mitigate future misunderstandings of natural history science. We also highlight geographic regions where there are relatively few or no publicly available natural history records to raise awareness about habitats that might be worthy of future natural history research and conservation. A major finding is that many of the areas that appear 'unexplored' may be in countries whose collections are not digitized (i.e., they don't have metadata such as GPS coordinates about their voucher specimens publicly available). We call for museums to prioritize digitizing those collections from these 'biodiversity blindspots' and for increased funding for museums to aid in these efforts. We also argue for increased scientific infrastructure so that more reference collections with vouchers can be kept in the countries of origin (particularly those countries lacking such infrastructure currently).
{"title":"What 'unexplored' means: mapping regions with digitized natural history records to look for 'biodiversity blindspots'.","authors":"Laymon Ball, Sheila Rodríguez-Machado, Diego Paredes-Burneo, Samantha Rutledge, David A Boyd, David Vander Pluym, Spenser Babb-Biernacki, Austin S Chipps, Rafet Ç Öztürk, Yahya Terzi, Prosanta Chakrabarty","doi":"10.7717/peerj.18511","DOIUrl":"10.7717/peerj.18511","url":null,"abstract":"<p><p>We examined global records of accessible natural history voucher collections (with publicly available data and reliable locality data) for terrestrial and freshwater vascular plants, fungi, freshwater fishes, birds, mammals, and herpetofauna (amphibians and reptiles) and highlight areas of the world that would be considered undersampled and sometimes called 'unexplored' (<i>i.e</i>., have relatively low, or no evidence of, past sampling efforts) under typical Western-scientific descriptions. We also question what 'unexplored' may mean in these contexts and explain how replacing the term in favor of more nuanced phrasing (<i>e.g</i>., 'biodiversity blindspots,' which emphasizes the lack of publicly available data about specimens) can mitigate future misunderstandings of natural history science. We also highlight geographic regions where there are relatively few or no publicly available natural history records to raise awareness about habitats that might be worthy of future natural history research and conservation. A major finding is that many of the areas that appear 'unexplored' may be in countries whose collections are not digitized (<i>i.e</i>., they don't have metadata such as GPS coordinates about their voucher specimens publicly available). We call for museums to prioritize digitizing those collections from these 'biodiversity blindspots' and for increased funding for museums to aid in these efforts. We also argue for increased scientific infrastructure so that more reference collections with vouchers can be kept in the countries of origin (particularly those countries lacking such infrastructure currently).</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18511"},"PeriodicalIF":2.3,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11745132/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143008049","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-17eCollection Date: 2025-01-01DOI: 10.7717/peerj.18212
Erick Arias, Andrew J Crawford, Andreas Hertz, Gabriela Parra Olea
The Craugastor podiciferus Species Group contains eleven species of terraranan frogs distributed from eastern Honduras to eastern Panama. All species have remarkable color pattern polymorphisms, which may contribute to potential taxonomic problems. We performed exhaustive sampling throughout the geographic distribution of the group to evaluate the phylogenetic relationships and biogeographic history of all named species based on two mitochondrial markers and nuclear ddRAD loci. We also implemented various species delimitation methods to test for the presence of unconfirmed candidate species within the group. Molecular phylogenetic analyses showed that the group contains four major clades. All currently named species are supported by molecular data, yet species richness within the group is clearly underestimated. Species delimitation was discordant between the mitochondrial and nuclear datasets and among analytical methods. Adopting a conservative approach, we propose that the C. podiciferus species group contains at least 12 unconfirmed candidate species. Ancestral area reconstruction showed that the group originated and diversified in the highlands of the Talamancan montane forest ecoregion of Costa Rica and western Panama.
{"title":"Deep cryptic diversity in the <i>Craugastor podiciferus</i> Species Group (Anura: Craugastoridae) of Isthmian Central America revealed by mitochondrial and nuclear data.","authors":"Erick Arias, Andrew J Crawford, Andreas Hertz, Gabriela Parra Olea","doi":"10.7717/peerj.18212","DOIUrl":"10.7717/peerj.18212","url":null,"abstract":"<p><p>The <i>Craugastor podiciferus</i> Species Group contains eleven species of terraranan frogs distributed from eastern Honduras to eastern Panama. All species have remarkable color pattern polymorphisms, which may contribute to potential taxonomic problems. We performed exhaustive sampling throughout the geographic distribution of the group to evaluate the phylogenetic relationships and biogeographic history of all named species based on two mitochondrial markers and nuclear ddRAD loci. We also implemented various species delimitation methods to test for the presence of unconfirmed candidate species within the group. Molecular phylogenetic analyses showed that the group contains four major clades. All currently named species are supported by molecular data, yet species richness within the group is clearly underestimated. Species delimitation was discordant between the mitochondrial and nuclear datasets and among analytical methods. Adopting a conservative approach, we propose that the <i>C. podiciferus</i> species group contains at least 12 unconfirmed candidate species. Ancestral area reconstruction showed that the group originated and diversified in the highlands of the Talamancan montane forest ecoregion of Costa Rica and western Panama.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18212"},"PeriodicalIF":2.3,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11745134/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143008008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16eCollection Date: 2025-01-01DOI: 10.7717/peerj.18767
Jong Guk Kim, Kyuhee Cho, Jimin Lee
There are few taxonomic studies of the harpacticoid family Idyanthidae Lang, 1944 in the Pacific Ocean. As a first report of the family in this region, one species of the monotypic genus Idyellopsis Lang, 1948 and two species of the genus Idyella Sars, 1905 are described from sublittoral habitats around the Korean Peninsula. Idyellopsis orientalis sp. nov. is distinguished from the type and only species of the genus, Idyellopsis typica Lang, 1948, in the length:width ratio of the body and genital double-somite, length of caudal seta I, and structure of the female P5 baseoendopod. Idyella dolichi sp. nov. and Idyella exochos sp. nov. share the armature of the female P5 exopod with four setae with Idyella exigua Sars, 1905, Idyella major Sars, 1920, and Idyella pallidula Sars, 1905. However, the two new species differ from the three European species in the armature of the terminal segment of the P1 endopod and female P5 baseoendopod, and in the shape of the genital double-somite. The male of Idyella dolichi sp. nov. also has two distinct features: the distal two segments of the P2 endopod are completely fused, and the third segment of the antennule has a prominent outer projection. The geographical distribution of Idyellopsis and Idyella is extended by the discovery of three new species in Korean waters. We also discuss a possible phylogenetic relationship among members of family Idyanthidae at genus level.
{"title":"Three new species of the family Idyanthidae (Copepoda, Harpacticoida) from sublittoral zones around the Korean Peninsula.","authors":"Jong Guk Kim, Kyuhee Cho, Jimin Lee","doi":"10.7717/peerj.18767","DOIUrl":"https://doi.org/10.7717/peerj.18767","url":null,"abstract":"<p><p>There are few taxonomic studies of the harpacticoid family Idyanthidae Lang, 1944 in the Pacific Ocean. As a first report of the family in this region, one species of the monotypic genus <i>Idyellopsis</i> Lang, 1948 and two species of the genus <i>Idyella</i> Sars, 1905 are described from sublittoral habitats around the Korean Peninsula. <i>Idyellopsis orientalis</i> sp. nov. is distinguished from the type and only species of the genus, <i>Idyellopsis typica</i> Lang, 1948, in the length:width ratio of the body and genital double-somite, length of caudal seta I, and structure of the female P5 baseoendopod. <i>Idyella dolichi</i> sp. nov. and <i>Idyella exochos</i> sp. nov. share the armature of the female P5 exopod with four setae with <i>Idyella exigua</i> Sars, 1905, <i>Idyella major</i> Sars, 1920, and <i>Idyella pallidula</i> Sars, 1905. However, the two new species differ from the three European species in the armature of the terminal segment of the P1 endopod and female P5 baseoendopod, and in the shape of the genital double-somite. The male of <i>Idyella dolichi</i> sp. nov. also has two distinct features: the distal two segments of the P2 endopod are completely fused, and the third segment of the antennule has a prominent outer projection. The geographical distribution of <i>Idyellopsis</i> and <i>Idyella</i> is extended by the discovery of three new species in Korean waters. We also discuss a possible phylogenetic relationship among members of family Idyanthidae at genus level.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18767"},"PeriodicalIF":2.3,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742251/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16eCollection Date: 2025-01-01DOI: 10.7717/peerj.18815
Yezi Hu, Hui Jin
Background: The purpose of this analysis was to investigate the associations between phase angle (PhA), body mass index (BMI) and insulin resistance (IR) in patients with type 2 diabetes mellitus (T2DM). Methods: The retrospective cross-sectional study included 200 T2DM patients treated during 2018 to 2019 in Zhongda Hospital Southeast University. PhA and other body composition indicators were measured by bioelectrical impedance analysis (BIA). Subjects were classified into four groups based on body composition: low phase angle and low body mass index (LPLB), low phase angle and high body mass index (LPHB), high phase angle and low body mass index (HPLB) and high phase angle and high body mass index (HPHB). Results: Overall, in the unadjusted model and minor, all adjusted models (unadjusted model, models 1-4), homeostasis model assessment of insulin resistance (HOMA-IR) was higher in the LPHB group than in the LPLB group (P = 0.034). In the unadjusted model, Model 1 (adjustment for age), Model 2 (adjust for age+duration), Model 3 (adjust for age+duration+sex+UA+TG+TC) and Model 4 (adjust for age+duration+sex+UA+TG+TC+HDL+HbA1c), the adjusted ORs for participants were 4.4 (95% CI [1.72-11.24]), 4.41 (95% CI [1.73-11.27]), 4.75 (95% CI [1.83-12.32]), 2.93 (95% CI [1.04-8.23]) and 3.1 (95% CI [1.09-8.86]) respectively, compared to LPHB group. Conclusions: T2DM patients with the body composition of low phase angle and high body mass index exhibited the most severe degree and the highest risk of insulin resistance.
{"title":"Association between phase angle, body mass index and insulin resistance in patients with type 2 diabetes mellitus: a cross-sectional study.","authors":"Yezi Hu, Hui Jin","doi":"10.7717/peerj.18815","DOIUrl":"10.7717/peerj.18815","url":null,"abstract":"<p><p><b>Background:</b> The purpose of this analysis was to investigate the associations between phase angle (PhA), body mass index (BMI) and insulin resistance (IR) in patients with type 2 diabetes mellitus (T2DM). <b>Methods:</b> The retrospective cross-sectional study included 200 T2DM patients treated during 2018 to 2019 in Zhongda Hospital Southeast University. PhA and other body composition indicators were measured by bioelectrical impedance analysis (BIA). Subjects were classified into four groups based on body composition: low phase angle and low body mass index (LPLB), low phase angle and high body mass index (LPHB), high phase angle and low body mass index (HPLB) and high phase angle and high body mass index (HPHB). <b>Results:</b> Overall, in the unadjusted model and minor, all adjusted models (unadjusted model, models 1-4), homeostasis model assessment of insulin resistance (HOMA-IR) was higher in the LPHB group than in the LPLB group (<i>P</i> = 0.034). In the unadjusted model, Model 1 (adjustment for age), Model 2 (adjust for age+duration), Model 3 (adjust for age+duration+sex+UA+TG+TC) and Model 4 (adjust for age+duration+sex+UA+TG+TC+HDL+HbA1c), the adjusted ORs for participants were 4.4 (95% CI [1.72-11.24]), 4.41 (95% CI [1.73-11.27]), 4.75 (95% CI [1.83-12.32]), 2.93 (95% CI [1.04-8.23]) and 3.1 (95% CI [1.09-8.86]) respectively, compared to LPHB group. <b>Conclusions:</b> T2DM patients with the body composition of low phase angle and high body mass index exhibited the most severe degree and the highest risk of insulin resistance.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18815"},"PeriodicalIF":2.3,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742247/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009495","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16eCollection Date: 2025-01-01DOI: 10.7717/peerj.18483
Wan Mohd Syazwan, Amy Yee-Hui Then, Ving Ching Chong, Mohammed Rizman-Idid
Population blooms of scyphozoan jellyfish in tropical shallow water regions can fuel localized fisheries but also negatively impact human welfare. However, there is a lack of baseline ecological data regarding the scyphozoans in the region, which could be used to manage a fast-growing fishery and mitigate potential impacts. Thus, this study aims to investigate the temporal factors driving the distribution of scyphozoan community along the environmental gradients under different monsoon seasons, rainfall periods, moon phases, and diel-tidal conditions in the Klang Strait located in the central region along the west coast of Peninsular Malaysia, where bloom events are increasing. Scyphozoan samples were collected using commercial bag nets during a 19-month survey. Temporal variations in species abundance and composition were evident and related to the local environmental parameters (salinity, dissolved oxygen, temperature, turbidity, and pH) that varied with the regional monsoon events, although these effects appeared to be species-specific. Phyllorhiza punctata, Acromitus flagellatus, Lychnorhiza malayensis, and Rhopilema esculentum were more abundant during the wetter northeast monsoon (NEM) while the abundance of Chrysaora chinensis and Lobonemoides robustus increased during the drier southwest monsoon (SWM). During the wet period of NEM, scyphozoan abundance was generally higher during the daytime than night-time. The regional monsoon regime and local hydrological events account for jellyfish abundance in the nearshore area with concurrent threats to coastal tourism and power plants, as well as benefits to fisheries especially during the NEM.
{"title":"Temporal drivers of abundance and community structure of scyphozoan jellyfish in tropical coastal waters.","authors":"Wan Mohd Syazwan, Amy Yee-Hui Then, Ving Ching Chong, Mohammed Rizman-Idid","doi":"10.7717/peerj.18483","DOIUrl":"10.7717/peerj.18483","url":null,"abstract":"<p><p>Population blooms of scyphozoan jellyfish in tropical shallow water regions can fuel localized fisheries but also negatively impact human welfare. However, there is a lack of baseline ecological data regarding the scyphozoans in the region, which could be used to manage a fast-growing fishery and mitigate potential impacts. Thus, this study aims to investigate the temporal factors driving the distribution of scyphozoan community along the environmental gradients under different monsoon seasons, rainfall periods, moon phases, and diel-tidal conditions in the Klang Strait located in the central region along the west coast of Peninsular Malaysia, where bloom events are increasing. Scyphozoan samples were collected using commercial bag nets during a 19-month survey. Temporal variations in species abundance and composition were evident and related to the local environmental parameters (salinity, dissolved oxygen, temperature, turbidity, and pH) that varied with the regional monsoon events, although these effects appeared to be species-specific. <i>Phyllorhiza punctata</i>, <i>Acromitus flagellatus</i>, <i>Lychnorhiza malayensis</i>, and <i>Rhopilema esculentum</i> were more abundant during the wetter northeast monsoon (NEM) while the abundance of <i>Chrysaora chinensis</i> and <i>Lobonemoides robustus</i> increased during the drier southwest monsoon (SWM). During the wet period of NEM, scyphozoan abundance was generally higher during the daytime than night-time. The regional monsoon regime and local hydrological events account for jellyfish abundance in the nearshore area with concurrent threats to coastal tourism and power plants, as well as benefits to fisheries especially during the NEM.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18483"},"PeriodicalIF":2.3,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742249/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16eCollection Date: 2025-01-01DOI: 10.7717/peerj.18438
Ayşin Bilgili
This study evaluated the effectiveness of arbuscular mycorrhizal fungi (AMF) species, including Funneliformis mosseae (FM), Rhizophagus intraradices (RI), Claroideoglomus etunicatum (CE), and a Mycorrhizal mix (MM) comprising these three species, on pepper plants (Capsicum annuum L.) inoculated with two isolates of Fusarium solani (48-F. solani and 18-F. solani) and two isolates of Fusarium mix (50-F. mixture and 147-F. mixture). Analysis of variance (ANOVA)-Tukey statistics revealed that the effects of AMF inoculations on morphological parameters, disease severity, root colonization, and total spore numbers in pathogen-infected plants varied significantly depending on the AMF species and pathogen group. AMF colonization significantly reduced disease severity, with disease inhibition (DI) reaching up to 58%, depending on the specific pathogen. However, there were a few instances where the application of AMF did not lead to a reduction in disease severity. Single AMF species were more effective in enhancing the growth of pathogen-treated host plants and suppressing disease compared to the mixed AMF. The mixed AMF was only more effective in balancing pathogen-induced decreases in plant nutrients (Copper (Cu), Magnesium (Mg), Zinc (Zn), and Phosphorus (P)). Among the compared mycorrhizae, C. etunicatum (CE) was the most effective in disease suppression due to its relatively more positive effects on plant root structure, increasing root fresh weight by up to 49% in the CE+pathogen plant group compared to the control group. Root colonization rates were generally higher in plants treated with both mycorrhiza and pathogens compared to plants treated with mycorrhiza alone. Overall, the curative effects of AMFs on plants following pathogen application varied concurrently with disease severity rates caused primarily by pathogens. AMFs demonstrated greater efficacy in combating 18-F. solani, which causes less severe plant disease. However, the effectiveness of AMFs was comparatively lower against 48-F. solani and 147-F. mix., which cause more severe plant disease. This indicates that the efficacy of AMFs varies depending on the specific strain of Fusarium solani, with better results observed against strains that cause less severe plant disease.
{"title":"The effectiveness of arbuscular mycorrhizal fungal species (<i>Funneliformis mosseae</i>, <i>Rhizophagus intraradices</i>, and <i>Claroideoglomus etunicatum</i>) in the biocontrol of root and crown rot pathogens, <i>Fusarium solani</i> and <i>Fusarium</i> mixture in pepper.","authors":"Ayşin Bilgili","doi":"10.7717/peerj.18438","DOIUrl":"https://doi.org/10.7717/peerj.18438","url":null,"abstract":"<p><p>This study evaluated the effectiveness of arbuscular mycorrhizal fungi (AMF) species, including <i>Funneliformis mosseae</i> (FM), <i>Rhizophagus intraradices</i> (RI), <i>Claroideoglomus etunicatum</i> (CE), and a Mycorrhizal mix (MM) comprising these three species, on pepper plants (<i>Capsicum annuum</i> L.) inoculated with two isolates of <i>Fusarium solani</i> (48-<i>F. solani</i> and 18-<i>F. solani</i>) and two isolates of <i>Fusarium</i> mix (50-F. mixture and 147-F. mixture). Analysis of variance (ANOVA)-Tukey statistics revealed that the effects of AMF inoculations on morphological parameters, disease severity, root colonization, and total spore numbers in pathogen-infected plants varied significantly depending on the AMF species and pathogen group. AMF colonization significantly reduced disease severity, with disease inhibition (DI) reaching up to 58%, depending on the specific pathogen. However, there were a few instances where the application of AMF did not lead to a reduction in disease severity. Single AMF species were more effective in enhancing the growth of pathogen-treated host plants and suppressing disease compared to the mixed AMF. The mixed AMF was only more effective in balancing pathogen-induced decreases in plant nutrients (Copper (Cu), Magnesium (Mg), Zinc (Zn), and Phosphorus (P)). Among the compared mycorrhizae, <i>C. etunicatum</i> (CE) was the most effective in disease suppression due to its relatively more positive effects on plant root structure, increasing root fresh weight by up to 49% in the CE+pathogen plant group compared to the control group. Root colonization rates were generally higher in plants treated with both mycorrhiza and pathogens compared to plants treated with mycorrhiza alone. Overall, the curative effects of AMFs on plants following pathogen application varied concurrently with disease severity rates caused primarily by pathogens. AMFs demonstrated greater efficacy in combating 18-<i>F. solani</i>, which causes less severe plant disease. However, the effectiveness of AMFs was comparatively lower against 48-<i>F. solani</i> and 147-<i>F</i>. mix., which cause more severe plant disease. This indicates that the efficacy of AMFs varies depending on the specific strain of <i>Fusarium solani</i>, with better results observed against strains that cause less severe plant disease.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18438"},"PeriodicalIF":2.3,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742253/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16eCollection Date: 2025-01-01DOI: 10.7717/peerj.18537
Nirmalendu Deb Nath, Agricola Odoi
Background: Diabetes is an increasingly important public health problem due to its socioeconomic impact, high morbidity, and mortality. Although there is evidence of increasing diabetes-related deaths over the last ten years, little is known about the population level predictors of diabetes-related mortality risks (DRMR) in Florida. Identifying these predictors is important for guiding control programs geared at reducing the diabetes burden and improving population health. Therefore, the objective of this study was to identify geographic disparities and predictors of county-level DRMR in Florida.
Methods: The 2019 mortality data for the state of Florida were obtained from the Florida Department of Health. The 10th International Classification of Disease codes E10-E14 were used to identify diabetes-related deaths which were then aggregated to the county-level. County-level DRMR were computed and presented as number of deaths per 100,000 persons. Geographic distribution of DRMR were displayed in choropleth maps and ordinary least squares (OLS) regression model was used to identify county-level predictors of DRMR.
Results: There was a total 6,078 diabetes-related deaths in Florida during the study time period. County-level DRMR ranged from 9.6 to 75.6 per 100,000 persons. High mortality risks were observed in the northern, central, and southcentral parts of the state. Relatively higher mortality risks were identified in rural counties compared to their urban counterparts. Significantly high county-level DRMR were observed in counties with high percentages of the population that were: 65 year and older (p < 0.001), current smokers (p = 0.032), and insufficiently physically active (p = 0.036). Additionally, percentage of households without vehicles (p = 0.022) and percentage of population with diabetes (p < 0.001) were significant predictors of DRMR.
Conclusion: Geographic disparities of DRMR exist in Florida, with high risks being observed in northern, central, and southcentral counties of the state. The study identified county-level predictors of these identified DRMR disparities in Florida. The findings are useful in guiding health professionals to better target intervention efforts.
{"title":"Predictors of county-level diabetes-related mortality risks in Florida, USA: a retrospective ecological study.","authors":"Nirmalendu Deb Nath, Agricola Odoi","doi":"10.7717/peerj.18537","DOIUrl":"10.7717/peerj.18537","url":null,"abstract":"<p><strong>Background: </strong>Diabetes is an increasingly important public health problem due to its socioeconomic impact, high morbidity, and mortality. Although there is evidence of increasing diabetes-related deaths over the last ten years, little is known about the population level predictors of diabetes-related mortality risks (DRMR) in Florida. Identifying these predictors is important for guiding control programs geared at reducing the diabetes burden and improving population health. Therefore, the objective of this study was to identify geographic disparities and predictors of county-level DRMR in Florida.</p><p><strong>Methods: </strong>The 2019 mortality data for the state of Florida were obtained from the Florida Department of Health. The 10th International Classification of Disease codes E10-E14 were used to identify diabetes-related deaths which were then aggregated to the county-level. County-level DRMR were computed and presented as number of deaths per 100,000 persons. Geographic distribution of DRMR were displayed in choropleth maps and ordinary least squares (OLS) regression model was used to identify county-level predictors of DRMR.</p><p><strong>Results: </strong>There was a total 6,078 diabetes-related deaths in Florida during the study time period. County-level DRMR ranged from 9.6 to 75.6 per 100,000 persons. High mortality risks were observed in the northern, central, and southcentral parts of the state. Relatively higher mortality risks were identified in rural counties compared to their urban counterparts. Significantly high county-level DRMR were observed in counties with high percentages of the population that were: 65 year and older (<i>p</i> < 0.001), current smokers (<i>p</i> = 0.032), and insufficiently physically active (<i>p</i> = 0.036). Additionally, percentage of households without vehicles (<i>p</i> = 0.022) and percentage of population with diabetes (<i>p</i> < 0.001) were significant predictors of DRMR.</p><p><strong>Conclusion: </strong>Geographic disparities of DRMR exist in Florida, with high risks being observed in northern, central, and southcentral counties of the state. The study identified county-level predictors of these identified DRMR disparities in Florida. The findings are useful in guiding health professionals to better target intervention efforts.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18537"},"PeriodicalIF":2.3,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742252/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009451","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16eCollection Date: 2025-01-01DOI: 10.7717/peerj.18796
Weifan Wan, Qian Liu, Ke Li, Kun Zhao, Fei Qi, Yuanshuo Li, Zhi Sun, Haigang Li
Background: The application of nitrogen (N) fertilizer to alfalfa (Medicago sativa L.) has received little attention due to the ability of this plant to fix N. However, N deficiency stress is often observed in marginal lands of China, especially in saline-alkali soils. Thus, this study aimed to assess the response of alfalfa yield, quality, N fixation, and soil N concentration to N fertilizer application at different stages in saline-alkali soil of Inner Mongolia. A 2-year (2020 and 2021) field experiment with five N fertilizer application rates, namely, 0 (N0), 20 (N20), 60 (N60), 120 (N120) and 180 (N180) kg N ha-1, was conducted in Inner Mongolia.
Results: The results showed that N fertilizer application of 180 kg ha-1 significantly increased the total alfalfa yield by 29%-32% by improving the stem‒leaf ratio; however, it didn't lead to a further increase in alfalfa quality. N fertilizer applications of 60 and 120 kg ha-1 significantly improved the crude protein by 10.6%-22.7% and reduced the acid or neutral detergent fiber by 10.0%-18.7% in vegetative and bud stages, respectively, by improving the leaf N concentration. Furthermore, the fraction of N derived from the atmosphere reached 68.6%, with a significant increase in the corresponding amount of N fixed in N60. Soil NO3--N concentrations significantly increased by 24.1%-33.3%, and NH4+-N concentrations increased by 1 to 3 times when N fertilizer application exceeded 120 kg N ha-1 compared with that in N0.
Conclusions: Overall, this study revealed the essential role of N fertilizer application at low rates in alfalfa production, as this practice not only increases alfalfa yield but also improves N fixation in saline‒alkali soil. However, it did not result in further improvement in alfalfa quality at the early flowering stage. The findings provides valuable guidance for N fertilizer application in alfalfa production on saline‒alkali soils.
背景:由于紫花苜蓿(Medicago sativa L.)具有固定氮的能力,因此氮肥的施用很少受到重视,但在中国的边缘土地,特别是盐碱地,经常观察到缺氮胁迫。因此,本研究旨在评价内蒙古盐碱地紫花苜蓿产量、品质、固氮和土壤氮浓度对不同阶段施氮量的响应。在内蒙古进行了为期2年(2020年和2021年)的5个氮肥施用量(0 (N0)、20 (N20)、60 (N60)、120 (N120)和180 (N180) kg N ha-1)的田间试验。结果:结果表明,施氮量为180 kg hm -1可通过提高茎叶比显著提高苜蓿总产量29% ~ 32%;然而,这并没有导致苜蓿质量的进一步提高。施氮60和120 kg hm -1通过提高叶片氮浓度,显著提高营养期和芽期粗蛋白质10.6% ~ 22.7%,酸性和中性洗涤纤维10.0% ~ 18.7%。大气中N的来源比例达到68.6%,N60中相应的N固定量显著增加。施氮量超过120 kg N hm -1时,土壤NO3—N浓度显著提高24.1% ~ 33.3%,NH4 +-N浓度较施氮量为0时提高1 ~ 3倍。结论:总体而言,本研究揭示了低施氮肥在苜蓿生产中的重要作用,因为低施氮肥不仅可以提高苜蓿产量,而且可以改善盐碱地的氮素固定。然而,在花前期,它并没有导致苜蓿品质的进一步提高。研究结果对盐碱地紫花苜蓿的氮肥施用具有指导意义。
{"title":"Nitrogen fertilizer application for improving the biomass, quality, and nitrogen fixation of alfalfa (<i>Medicago sativa</i> L.) at different growth stages in a saline‒alkali soil.","authors":"Weifan Wan, Qian Liu, Ke Li, Kun Zhao, Fei Qi, Yuanshuo Li, Zhi Sun, Haigang Li","doi":"10.7717/peerj.18796","DOIUrl":"10.7717/peerj.18796","url":null,"abstract":"<p><strong>Background: </strong>The application of nitrogen (N) fertilizer to alfalfa (<i>Medicago sativa</i> L.) has received little attention due to the ability of this plant to fix N. However, N deficiency stress is often observed in marginal lands of China, especially in saline-alkali soils. Thus, this study aimed to assess the response of alfalfa yield, quality, N fixation, and soil N concentration to N fertilizer application at different stages in saline-alkali soil of Inner Mongolia. A 2-year (2020 and 2021) field experiment with five N fertilizer application rates, namely, 0 (N0), 20 (N20), 60 (N60), 120 (N120) and 180 (N180) kg N ha<sup>-1</sup>, was conducted in Inner Mongolia.</p><p><strong>Results: </strong>The results showed that N fertilizer application of 180 kg ha<sup>-1</sup> significantly increased the total alfalfa yield by 29%-32% by improving the stem‒leaf ratio; however, it didn't lead to a further increase in alfalfa quality. N fertilizer applications of 60 and 120 kg ha<sup>-1</sup> significantly improved the crude protein by 10.6%-22.7% and reduced the acid or neutral detergent fiber by 10.0%-18.7% in vegetative and bud stages, respectively, by improving the leaf N concentration. Furthermore, the fraction of N derived from the atmosphere reached 68.6%, with a significant increase in the corresponding amount of N fixed in N60. Soil NO<sub>3</sub> <sup>-</sup>-N concentrations significantly increased by 24.1%-33.3%, and NH<sub>4</sub> <sup>+</sup>-N concentrations increased by 1 to 3 times when N fertilizer application exceeded 120 kg N ha<sup>-1</sup> compared with that in N0.</p><p><strong>Conclusions: </strong>Overall, this study revealed the essential role of N fertilizer application at low rates in alfalfa production, as this practice not only increases alfalfa yield but also improves N fixation in saline‒alkali soil. However, it did not result in further improvement in alfalfa quality at the early flowering stage. The findings provides valuable guidance for N fertilizer application in alfalfa production on saline‒alkali soils.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18796"},"PeriodicalIF":2.3,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742254/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009462","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-16eCollection Date: 2025-01-01DOI: 10.7717/peerj.18638
Ning Wang, Li Tian
The fruits of Rosa laxa Retz. (FRL) have a long history of medicinal use, known for their rich composition of flavonoids, polyphenols, amino acids, sugars, and other bioactive compounds. FRL exhibits pharmacological effects such as antioxidant, antiviral, antibacterial, and antitumor activities, making it a valuable resource with significant development potential in both the food and pharmaceutical industries. This study employed a response surface methodology combined with ultra-high-performance liquid chromatography-triple quadrupole mass spectrometry (UPLC-TQ-MS) to optimize FRL extraction. Reflux extraction was determined to be the most effective method with the following optimized parameters: 65% ethanol extraction solvent, material-to-liquid ratio of 1:35 (g/mL), and extraction time of 140 min, resulting in the FRL extract (FRLE). Under these optimized conditions, the extracted amount was extract was 51.00 ± 1.07%, the average content of total polyphenols was 126.55 ± 2.61 mg/g, and the average content of euscaphic acid was 2.90 ± 0.08 mg/g, demonstrating the efficiency of the extraction method. Using the Caco-2 cell model, the study investigated the absorption characteristics of euscaphic acid and tiliroside within FRLE. Results indicated that with increasing time, the absorbed amount (Qr) of euscaphic acid and tiliroside gradually increased, with an efflux ratio (RB→A/A→B) of less than 1.5, suggesting bidirectional drug transport with no significant directionality. Upon the addition of P-glycoprotein (P-gp) inhibitors Verapamil (Ver) and Ciclosporin A (CsA), as well as the chelating agent ethylenebis (oxyethylenenitrilo) tetraacetic acid (EGTA), Qr and Papp values notably increased, indicating that these two components are P-gp substrates with cellular basolateral efflux transport. Additionally, optimal absorption efficiency was observed under weakly acidic conditions (pH 6.0). In conclusion, euscaphic acid and tiliroside in FRLE demonstrated good membrane permeability, primarily relying on passive diffusion for absorption. This study offers experimental insights into the intestinal absorption of FRL in vivo.
{"title":"Study on the absorption characteristics of euscaphic acid and tiliroside in fruits of <i>Rosa laxa</i> Retz.","authors":"Ning Wang, Li Tian","doi":"10.7717/peerj.18638","DOIUrl":"10.7717/peerj.18638","url":null,"abstract":"<p><p>The fruits of <i>Rosa laxa</i> Retz. (FRL) have a long history of medicinal use, known for their rich composition of flavonoids, polyphenols, amino acids, sugars, and other bioactive compounds. FRL exhibits pharmacological effects such as antioxidant, antiviral, antibacterial, and antitumor activities, making it a valuable resource with significant development potential in both the food and pharmaceutical industries. This study employed a response surface methodology combined with ultra-high-performance liquid chromatography-triple quadrupole mass spectrometry (UPLC-TQ-MS) to optimize FRL extraction. Reflux extraction was determined to be the most effective method with the following optimized parameters: 65% ethanol extraction solvent, material-to-liquid ratio of 1:35 (g/mL), and extraction time of 140 min, resulting in the FRL extract (FRLE). Under these optimized conditions, the extracted amount was extract was 51.00 ± 1.07%, the average content of total polyphenols was 126.55 ± 2.61 mg/g, and the average content of euscaphic acid was 2.90 ± 0.08 mg/g, demonstrating the efficiency of the extraction method. Using the Caco-2 cell model, the study investigated the absorption characteristics of euscaphic acid and tiliroside within FRLE. Results indicated that with increasing time, the absorbed amount (<i>Qr</i>) of euscaphic acid and tiliroside gradually increased, with an efflux ratio (R<sub>B→A/A→B</sub>) of less than 1.5, suggesting bidirectional drug transport with no significant directionality. Upon the addition of P-glycoprotein (P-gp) inhibitors Verapamil (Ver) and Ciclosporin A (CsA), as well as the chelating agent ethylenebis (oxyethylenenitrilo) tetraacetic acid (EGTA), <i>Qr</i> and <i>Papp</i> values notably increased, indicating that these two components are P-gp substrates with cellular basolateral efflux transport. Additionally, optimal absorption efficiency was observed under weakly acidic conditions (pH 6.0). In conclusion, euscaphic acid and tiliroside in FRLE demonstrated good membrane permeability, primarily relying on passive diffusion for absorption. This study offers experimental insights into the intestinal absorption of FRL <i>in vivo</i>.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18638"},"PeriodicalIF":2.3,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742250/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143009506","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}