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Morphometric analysis revealed two different Mediterranean horse mackerel (Trachurus mediterraneus) stocks in the Adriatic Sea.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18765
Claudio Vasapollo

Phenotypical differentiation among individuals of Mediterranean horse mackerel Trachurus mediterraneus in the Adriatic Sea was investigated through the analysis of several morphometric characters. Overall, 426 individuals of Mediterranean horse mackerels were sampled from the northern, central and southern Adriatic Sea during the summers of 2012 and 2013. Forty-six morphometric characters were measured for each individual and then compared using multivariate techniques (linear discriminant analysis). Based on the morphometric characteristics, at least two different Mediterranean horse mackerel were identified: one comprising the northern and central Adriatic, and the other formed by individuals from the southern Adriatic basin. The northern and central areas showed stable populations, overlapping both in space and time. The southern area seemed to be more variable over the years, with a low degree of overlapping both in space and time. A possible hypothesis for this, to be further investigated, could be the flow of individuals from the Ionian and Aegean Seas populations through the Otranto Channel. The main differences between the two stocks were associated with the head characters of the fish. In particular, the northern and central Adriatic Sea individuals had shorter and thicker heads than the southern ones. This could be due to different feeding habits: the former mainly feed on small fishes, the latter mainly on euphausiids. A short mouth could reduce the power of suction of bigger preys, while a long mouth could increase the volume of water to be filtered to feed on small planktonic crustaceans. From this study, it becomes clear that the Mediterranean horse mackerel should not be managed as a single stock in the Adriatic Sea as it was evident that at least two morphologically different stocks are present in the basin.

通过分析几种形态特征,研究了亚得里亚海地中海马鲛(Trachurus mediterraneus)个体之间的表型差异。2012 年和 2013 年夏季,在亚得里亚海北部、中部和南部共采集了 426 个地中海马鲛鱼个体样本。对每个个体的 46 个形态特征进行了测量,然后使用多元技术(线性判别分析)进行比较。根据形态特征,至少确定了两种不同的地中海马鲛:一种由亚得里亚海北部和中部组成,另一种由亚得里亚海南部盆地的个体组成。北部和中部地区显示出稳定的种群,在空间和时间上都有重叠。南部地区多年来似乎变化较大,在空间和时间上的重叠程度较低。一个有待进一步研究的可能假设是,爱奥尼亚海和爱琴海种群的个体流经奥特朗托海峡。两个种群之间的主要差异与鱼的头部特征有关。特别是,亚得里亚海北部和中部的个体比南部的个体头部更短更粗。这可能是由于不同的摄食习惯:前者主要摄食小型鱼类,后者主要摄食极细小鱼类。短嘴可以降低对较大猎物的吸力,而长嘴可以增加过滤水量,以捕食小型浮游甲壳类动物。这项研究清楚地表明,地中海马鲛鱼不应作为亚得里亚海的单一种群进行管理,因为该海盆中显然至少存在两种形态不同的种群。
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引用次数: 0
A nociceptor-specific RNAi screen in Drosophila larvae identifies RNA-binding proteins that regulate thermal nociception.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18857
Amber Dyson, Gita Gajjar, Katherine C Hoffman, Dakota Lewis, Sara Palega, Erik Rangel Silva, James Auwn, Andrew Bellemer

Nociception is the process by which sensory neurons detect and encode potentially harmful environmental stimuli to generate behavioral responses. Nociceptor neurons exhibit plasticity in which their sensitivity to noxious stimuli and subsequent ability to drive behavior may be altered by environmental conditions, injury, infection, and inflammation. In some cases, nociceptor sensitization requires regulated changes in gene expression, and recent studies have indicated roles for post-transcriptional mechanisms in regulating these changes as an aspect of nociceptor plasticity. The larvae of Drosophila melanogaster have been developed as a powerful model for studying mechanisms of nociception, nociceptor plasticity, and nociceptor development. Diverse RNA-binding proteins regulate the development and morphology of larval nociceptors, implying important roles for post-transcriptional regulation of gene expression in these neurons, but the importance of these mechanisms for nociceptive behavior has not been investigated systematically. In this study, we conducted a nociceptor-specific RNAi screen of 112 candidate RNA-binding protein genes to identify those that are required for normal sensitivity to noxious thermal stimuli. The screen and subsequent validation experiments identified nine candidate genes (eIF2α, eIF4A, eIF4AIII, eIF4G2, mbl, SC35, snf, Larp4B and CG10445) that produce defects in nociceptive response latency when knocked down in larval nociceptors. Some of the genes identified have well-understood roles in the regulation of translation initiation and regulation of nociceptor sensitization in vertebrate and invertebrate animal models, suggesting an evolutionarily conserved role for these mechanisms in regulating nociceptor sensitivity. Other screen isolates have previously described roles in regulating nociceptor morphology and mRNA processing, but less clear roles in regulating nociceptor function. Further studies will be necessary to identify the mechanisms by which the identified RNA-binding proteins regulate sensory neuron function and the identities of the mRNAs that they target.

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引用次数: 0
Controlled temperature contrasts of three native and one highly invasive annual plant species in California.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18794
Mario Zuliani, Stephanie Haas-Desmarais, Laura Brussa, Jessica Cunsolo, Angela Zuliani, Christopher J Lortie

Plant responses to changes in temperature can be a key factor in predicting the presence and managing invasive plant species while conserving resident native plant species in dryland ecosystems. Climate can influence germination, establishment, and seedling biomass of both native and invasive plant species. We tested the hypothesis that common and widely distributed native and an invasive plant species in dryland ecosystems in California respond differently to increasing temperatures. To test this, we examined the effects of temperature variation on germination, establishment, and per capita seedling biomass of three native and one invasive plant species (Bromus rubens) in independent 6 week growth trial experiments in a controlled greenhouse. Higher relative temperatures reduced the germination and establishment of the tested invasive species and two tested native species, however, per capita biomass was not significantly affected. Specifically, germination and establishment of the invasive species B. rubens and the native species Phacelia tanacetifolia was significantly reduced. This invasive species can often outcompete natives, but increasing temperature could potentially shift the balance between the germination and establishment of natives. A warming climate will likely have negative impacts on native annual plant species in California tested here because increasing temperatures can co-occur with drought. This study shows that our tested native annual plant species tested here have some resilience to relatively significant increases in temperature, and this can favor at least one native species relative to at least one highly noxious invasive plant species.

植物对温度变化的反应是预测入侵植物物种的存在并对其进行管理的关键因素,同时也是保护旱地生态系统中本地常驻植物物种的关键因素。气候会影响本地和入侵植物物种的发芽、成苗和幼苗生物量。我们测试了一个假设,即加利福尼亚旱地生态系统中常见且分布广泛的本土植物物种和入侵植物物种对温度升高的反应不同。为了验证这一假设,我们在受控温室中进行了为期 6 周的独立生长试验,研究了温度变化对三种本地植物物种和一种入侵植物物种(Bromus rubens)的发芽、成苗和人均幼苗生物量的影响。较高的相对温度降低了受测入侵物种和两种受测本地物种的发芽率和成活率,但人均生物量并未受到显著影响。具体来说,入侵物种 B. rubens 和本地物种 Phacelia tanacetifolia 的发芽和成活率明显降低。这种入侵物种通常会超过本地物种,但温度的升高可能会改变本地物种发芽和生长之间的平衡。气候变暖可能会对本文测试的加州本地一年生植物物种产生负面影响,因为气温升高可能与干旱同时发生。这项研究表明,我们在此测试的本地一年生植物物种对相对显著的温度升高有一定的适应能力,相对于至少一种高度有害的入侵植物物种,这对至少一种本地物种有利。
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引用次数: 0
Geometrical determinants of cerebral artery fenestration for cerebral infarction.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18774
Yuqian Mei, Xiaoqin Chen, Yao Zhang, Yanling Wang, Bo Wu, Mingcheng Hu, Quan Bao

Purpose: Few data are available on the causality of cerebral artery fenestration (CAF) triggering cerebral infarction (CI) and this study aims to identify representative morphological features that can indicate risks.

Methods: A cohort comprising 89 patients diagnosed with CAF were enrolled from a total of 9,986 cranial MR angiographies. These patients were categorized into Infarction Group (n = 55) and Control Group (n = 34) according to infarction events. These two groups are divided into two subgroups depending on fenestration location (basilar artery or other cerebravascular location), respectively, i.e., BA Infarction Group (n = 37), BA Control Group (n = 23), Non_BA Infarction Group (n = 18), Non_BA Control Group (n = 11). This study firstly defined 12 indices to quantify the morphological characteristics of fenestration per se and its connecting arteries. The data were evaluated using either the independent sample t-test or the Mann-Whitney U test. Conducting univariate and multivariate logistic regression analyses to ascertain potential independent predictors of CI.

Results: The initiation angle φ 1 and confluence angle φ 2 at the fenestration in the Infarction Group are both smaller compared to the Control Group, but only the Infarction Group and BA Infarction Group have significant difference (p < 0.05). The maximum left fenestration axis (fAL) and the left tortuosity index (TIL) were greater in the Infarction Group for CAFs than those in the Control Group (p < 0.05). In contrast, the maximum right fenestration axis (fAR) and the right tortuosity index (TIR) were smaller than those in Control Group (p < 0.05). The logistic regression analysis revealed that φ 2 (AUC = 0.68, p = 0.02), fAL (AUC = 0.72, p < 0.01), and fAR (AUC = 0.70, p < 0.01) serve as independent risk factors influencing the occurrence of CI. The regression predictive model achieved an AUC of 0.83, enabling accurate classification of 77.5% of cases, indicating a robust predictive performance of the model.

Conclusion: Morphological results demonstrated a left-leaning type of fenestration with more narrow fenestration terminals indicating a higher risk of CI occurrence. Furthermore, the regression predictive model established in this study demonstrates a good predictive performance, enabling early prediction of CI occurrence in fenestrated patients and facilitating early diagnosis of CI.

目的:有关脑动脉瘘(CAF)引发脑梗死(CI)的因果关系的数据很少,本研究旨在确定可提示风险的代表性形态特征:从总共 9,986 例头颅磁共振血管造影中选取了 89 例确诊为 CAF 的患者。根据梗死事件将这些患者分为梗死组(55 人)和对照组(34 人)。这两组又根据瘘口位置(基底动脉或其他脑血管位置)分为两个亚组,即 BA 梗死组(n = 37)、BA 对照组(n = 23)、Non_BA 梗死组(n = 18)、Non_BA 对照组(n = 11)。本研究首先定义了 12 项指标,用于量化栅栏本身及其连接动脉的形态特征。采用独立样本 t 检验或 Mann-Whitney U 检验对数据进行评估。进行单变量和多变量逻辑回归分析,以确定 CI 的潜在独立预测因素:结果:与对照组相比,梗死组瘘管处的起始角φ 1 和汇合角φ 2 均较小,但只有梗死组和 BA 梗死组有显著差异(p L),梗死组 CAFs 的左侧迂曲指数(TIL)大于对照组(p R),右侧迂曲指数(TIR)小于对照组(p φ 2(AUC = 0.68,p = 0.02)、fAL(AUC = 0.72,p R(AUC = 0.70,p 结论:右侧迂曲指数(TIR)小于对照组(p φ 2(AUC = 0:形态学结果表明,左倾类型的栅栏与更狭窄的栅栏终端表明发生 CI 的风险更高。此外,本研究建立的回归预测模型具有良好的预测性能,可早期预测栅栏型患者的 CI 发生率,有助于 CI 的早期诊断。
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引用次数: 0
Three-dimensional analysis of facial morphology in nine-year-old children with different unilateral orofacial clefts compared to normative data.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18739
Marjolein Crins-de Koning, Robin Bruggink, Marloes Nienhuijs, Till Wagner, Ewald M Bronkhorst, Edwin M Ongkosuwito

Aim: To compare three-dimensional (3D) facial morphology of various unilateral cleft subphenotypes at 9-years of age to normative data using a general face template and automatic landmarking. The secondary objective is to compare facial morphology of 9-year-old children with unilateral fusion to differentiation defects.

Methods: 3D facial stereophotogrammetric images of 9-year-old unilateral cleft patients were imported into 3DMedX® for processing. All images of patients with a right sided cleft were mirrored. A regionalized general facial template was used for standardization. This template was pre-aligned to each face using five automatically determined landmarks and fitted using MeshMonk. All cleft patients were compared to an age-and gender matched normative face using distance maps and inter-surface distances (mm). Average faces were created for five groups (unilateral cleft lip, alveolus, and/or palate (UCL/A/P), fusion and differentiation defects). The selected regions for the evaluation of facial morphology were: complete face, nose, upper lip, lower lip, chin, forehead, and cheeks.

Results: A total of 86 consecutive 3D-stereophotogrammetry images were acquired for examination. No statistically significant differences were observed among the UCL, UCLA, and UCLP groups for the complete face, cheeks, chin, forehead, lower lip, and nose. However, in the upper lip region a significant difference was observed between the UCLP and UCL groups (P = 0.004, CI [-2.93 to -0.48]). Further visual examination of the distance maps indicated that more severe clefts corresponded to increased retrusion in the midface and the tip of the nose, though these differences were not statistically significant across groups. For fusion vs differentiation defects, no statistically significant differences were observed, neither for the complete face nor for any of the individual regions.

Conclusion: The findings demonstrate statistically significant differences in the upper lip region between children with UCL and those with UCLP, particularly with greater upper lip retrusion in the UCLP group. The use of color-coded distance maps revealed local variations and a trend of asymmetry in the nasal region, with increasing retrusion of the nose tip, upper lip, and cheeks correlating with the severity of the cleft. Although these trends were not statistically significant, they suggest a progressive facial retrusion pattern as cleft severity increases. For the secondary objective, no statistical differences were found between the facial morphology of children with fusion and differentiation defects, although a similar progression of maxillary retrusion was observed in the distance maps.

{"title":"Three-dimensional analysis of facial morphology in nine-year-old children with different unilateral orofacial clefts compared to normative data.","authors":"Marjolein Crins-de Koning, Robin Bruggink, Marloes Nienhuijs, Till Wagner, Ewald M Bronkhorst, Edwin M Ongkosuwito","doi":"10.7717/peerj.18739","DOIUrl":"10.7717/peerj.18739","url":null,"abstract":"<p><strong>Aim: </strong>To compare three-dimensional (3D) facial morphology of various unilateral cleft subphenotypes at 9-years of age to normative data using a general face template and automatic landmarking. The secondary objective is to compare facial morphology of 9-year-old children with unilateral fusion to differentiation defects.</p><p><strong>Methods: </strong>3D facial stereophotogrammetric images of 9-year-old unilateral cleft patients were imported into 3DMedX® for processing. All images of patients with a right sided cleft were mirrored. A regionalized general facial template was used for standardization. This template was pre-aligned to each face using five automatically determined landmarks and fitted using MeshMonk. All cleft patients were compared to an age-and gender matched normative face using distance maps and inter-surface distances (mm). Average faces were created for five groups (unilateral cleft lip, alveolus, and/or palate (UCL/A/P), fusion and differentiation defects). The selected regions for the evaluation of facial morphology were: complete face, nose, upper lip, lower lip, chin, forehead, and cheeks.</p><p><strong>Results: </strong>A total of 86 consecutive 3D-stereophotogrammetry images were acquired for examination. No statistically significant differences were observed among the UCL, UCLA, and UCLP groups for the complete face, cheeks, chin, forehead, lower lip, and nose. However, in the upper lip region a significant difference was observed between the UCLP and UCL groups (<i>P</i> = 0.004, CI [-2.93 to -0.48]). Further visual examination of the distance maps indicated that more severe clefts corresponded to increased retrusion in the midface and the tip of the nose, though these differences were not statistically significant across groups. For fusion <i>vs</i> differentiation defects, no statistically significant differences were observed, neither for the complete face nor for any of the individual regions.</p><p><strong>Conclusion: </strong>The findings demonstrate statistically significant differences in the upper lip region between children with UCL and those with UCLP, particularly with greater upper lip retrusion in the UCLP group. The use of color-coded distance maps revealed local variations and a trend of asymmetry in the nasal region, with increasing retrusion of the nose tip, upper lip, and cheeks correlating with the severity of the cleft. Although these trends were not statistically significant, they suggest a progressive facial retrusion pattern as cleft severity increases. For the secondary objective, no statistical differences were found between the facial morphology of children with fusion and differentiation defects, although a similar progression of maxillary retrusion was observed in the distance maps.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18739"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758908/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047617","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Turkish validation of a resilience scale from older people's perspectives: resilience scale for older adults.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18837
Seher Palanbek Yavaş, Caner Baysan

Background: As the global population ages and life expectancy increases, older adults encounter challenges like chronic illnesses and losing loved ones; resilience is crucial for adapting to these difficulties. This study aims to culturally and linguistically adapt the psychological resilience scale designed for older adults to the Turkish context.

Methods: This methodological study included 566 individuals aged 65 and older. All participants completed the Resilience Scale for Older Adults, the Perceived Stress Scale, the Geriatric Depression Scale, and the Quality of Life in Older Adults Scale-Short Form. Construct validity was assessed through confirmatory and exploratory factor analyses, while convergent and discriminant validity were evaluated through the correlation of the scales. Reliability was determined using internal consistency and the split-half method.

Results: The scale retains its original structure with 33 items and four sub-dimensions (Intrapersonal, Interpersonal, Spiritual, and Experiential). The content validity index of the scale is 0.98, with item loadings ranging from 0.406 to 0.947, according to exploratory factor analysis. Confirmatory factor analysis indicates good fit indices. Convergent validity is supported by a strong positive correlation (r = 0.657, p < 0.001) between the Resilience Scale for Older Adults and the Quality of Life in Older Adults Scale-Short Form. Reliability measures include a Cronbach's alpha internal consistency coefficient of 0.93 and a Guttman split-half reliability coefficient of 0.723.

Conclusion: The results show that the Turkish version of the Resilience Scale for Older Adults is a valid and reliable measurement tool.

{"title":"Turkish validation of a resilience scale from older people's perspectives: resilience scale for older adults.","authors":"Seher Palanbek Yavaş, Caner Baysan","doi":"10.7717/peerj.18837","DOIUrl":"10.7717/peerj.18837","url":null,"abstract":"<p><strong>Background: </strong>As the global population ages and life expectancy increases, older adults encounter challenges like chronic illnesses and losing loved ones; resilience is crucial for adapting to these difficulties. This study aims to culturally and linguistically adapt the psychological resilience scale designed for older adults to the Turkish context.</p><p><strong>Methods: </strong>This methodological study included 566 individuals aged 65 and older. All participants completed the Resilience Scale for Older Adults, the Perceived Stress Scale, the Geriatric Depression Scale, and the Quality of Life in Older Adults Scale-Short Form. Construct validity was assessed through confirmatory and exploratory factor analyses, while convergent and discriminant validity were evaluated through the correlation of the scales. Reliability was determined using internal consistency and the split-half method.</p><p><strong>Results: </strong>The scale retains its original structure with 33 items and four sub-dimensions (Intrapersonal, Interpersonal, Spiritual, and Experiential). The content validity index of the scale is 0.98, with item loadings ranging from 0.406 to 0.947, according to exploratory factor analysis. Confirmatory factor analysis indicates good fit indices. Convergent validity is supported by a strong positive correlation (r = 0.657, <i>p</i> < 0.001) between the Resilience Scale for Older Adults and the Quality of Life in Older Adults Scale-Short Form. Reliability measures include a Cronbach's alpha internal consistency coefficient of 0.93 and a Guttman split-half reliability coefficient of 0.723.</p><p><strong>Conclusion: </strong>The results show that the Turkish version of the Resilience Scale for Older Adults is a valid and reliable measurement tool.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18837"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758914/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Melatonin attenuates MPP+-induced autophagy via heat shock protein in the Parkinson's disease mouse model.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18788
Yinli Guo, Chengbo Liu

Background: This study investigates the protective properties of melatonin in an in vivo Parkinson's disease (PD) model, focusing on the underlying mechanisms involving heat shock proteins (HSPs).

Methods: Twelve adult male C57BL/6 mice were randomly divided into four groups (normal control, melatonin control, Parkinson's model, and melatonin treatment; n = 3 per group) and housed in a single cage. 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) was injected intraperitoneally in the Parkinson's model and treatment groups to establish a subacute PD model, while controls received saline. Limb motor ability was assessed 1 h after the final injection using behavioral tests, including the open field test to evaluate central zone entries and average movement. Dopamine transporter (DAT) expression in the striatum was analyzed by immunohistochemistry, and Western blot was used to measure autophagy proteins and HSP70 levels.

Results: The PD mouse model was successfully established through MPTP stimulation. Compared to the normal control group, the model group showed a significant reduction in the frequency of entering the central zone and average movement. The number of DAT-positive cells in the brain also decreased significantly. The expression levels of HSP70 and CDK5 were significantly lower, while the expression levels of LC3 II /LC3I and p62 increased significantly. In the MT treatment group, both the frequency of entering the central zone and the average movement were significantly higher compared to the model group. DAT-positive cells in the midbrain also increased significantly. The expression levels of HSP70 and CDK5 were significantly elevated, while the expression levels of LC3 II /LC3I and p62 protein were significantly decreased.

Conclusion: Melatonin exerts a protective effect against MPP+-induced damage to dopaminergic neurons, presumably by upregulating HSP70, which inhibits neuronal autophagy.

背景:本研究调查了褪黑素在体内帕金森病(PD)模型中的保护特性,重点是涉及热休克蛋白(HSPs)的潜在机制:本研究调查了褪黑素在体内帕金森病(PD)模型中的保护特性,重点是涉及热休克蛋白(HSPs)的潜在机制:将12只成年雄性C57BL/6小鼠随机分为四组(正常对照组、褪黑素对照组、帕金森病模型组和褪黑素治疗组;每组n=3),并饲养在一个笼子中。帕金森模型组和治疗组腹腔注射 1-甲基-4-苯基-1,2,3,6-四氢吡啶(MPTP)以建立亚急性帕金森病模型,对照组则注射生理盐水。最后一次注射1小时后,使用行为测试评估肢体运动能力,包括评估中心区进入和平均运动的开阔地测试。用免疫组化方法分析纹状体中多巴胺转运体(DAT)的表达,并用Western印迹法测定自噬蛋白和HSP70的水平:结果:通过MPTP刺激成功建立了帕金森病小鼠模型。与正常对照组相比,模型组小鼠进入中心区的频率和平均移动次数明显减少。脑内DAT阳性细胞的数量也明显减少。HSP70和CDK5的表达水平明显降低,而LC3 II /LC3I和p62的表达水平明显升高。与模型组相比,MT 治疗组进入中心区的频率和平均移动次数均明显增加。中脑的DAT阳性细胞也明显增加。HSP70和CDK5的表达水平明显升高,而LC3 II /LC3I和p62蛋白的表达水平则明显下降:结论:褪黑素对MPP+诱导的多巴胺能神经元损伤具有保护作用,可能是通过上调HSP70抑制神经元自噬。
{"title":"Melatonin attenuates MPP<sup>+</sup>-induced autophagy <i>via</i> heat shock protein in the Parkinson's disease mouse model.","authors":"Yinli Guo, Chengbo Liu","doi":"10.7717/peerj.18788","DOIUrl":"10.7717/peerj.18788","url":null,"abstract":"<p><strong>Background: </strong>This study investigates the protective properties of melatonin in an <i>in vivo</i> Parkinson's disease (PD) model, focusing on the underlying mechanisms involving heat shock proteins (HSPs).</p><p><strong>Methods: </strong>Twelve adult male C57BL/6 mice were randomly divided into four groups (normal control, melatonin control, Parkinson's model, and melatonin treatment; <i>n</i> = 3 per group) and housed in a single cage. 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) was injected intraperitoneally in the Parkinson's model and treatment groups to establish a subacute PD model, while controls received saline. Limb motor ability was assessed 1 h after the final injection using behavioral tests, including the open field test to evaluate central zone entries and average movement. Dopamine transporter (DAT) expression in the striatum was analyzed by immunohistochemistry, and Western blot was used to measure autophagy proteins and HSP70 levels.</p><p><strong>Results: </strong>The PD mouse model was successfully established through MPTP stimulation. Compared to the normal control group, the model group showed a significant reduction in the frequency of entering the central zone and average movement. The number of DAT-positive cells in the brain also decreased significantly. The expression levels of HSP70 and CDK5 were significantly lower, while the expression levels of LC3 II /LC3I and p62 increased significantly. In the MT treatment group, both the frequency of entering the central zone and the average movement were significantly higher compared to the model group. DAT-positive cells in the midbrain also increased significantly. The expression levels of HSP70 and CDK5 were significantly elevated, while the expression levels of LC3 II /LC3I and p62 protein were significantly decreased.</p><p><strong>Conclusion: </strong>Melatonin exerts a protective effect against MPP<sup>+</sup>-induced damage to dopaminergic neurons, presumably by upregulating HSP70, which inhibits neuronal autophagy.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18788"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758912/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Priority effects, nutrition and milk glycan-metabolic potential drive Bifidobacterium longum subspecies dynamics in the infant gut microbiome.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18602
Nicholas Pucci, Joanne Ujčič-Voortman, Arnoud P Verhoeff, Daniel R Mende
<p><strong>Background: </strong>The initial colonization of the infant gut is a complex process that defines the foundation for a healthy microbiome development. <i>Bifidobacterium longum</i> is one of the first colonizers of newborns' gut, playing a crucial role in the healthy development of both the host and its microbiome. However, <i>B. longum</i> exhibits significant genomic diversity, with subspecies (<i>e.g., Bifidobacterium longum</i> subsp. <i>infantis</i> and subsp. <i>longum</i>) displaying distinct ecological and metabolic strategies including differential capabilities to break down human milk glycans (HMGs). To promote healthy infant microbiome development, a good understanding of the factors governing infant microbiome dynamics is required.</p><p><strong>Methodology: </strong>We analyzed newly sequenced gut microbiome samples of mother-infant pairs from the Amsterdam Infant Microbiome Study (AIMS) and four publicly available datasets to identify important environmental and bifidobacterial features associated with the colonization success and succession outcomes of <i>B. longum</i> subspecies. Metagenome-assembled genomes (MAGs) were generated and assessed to identify characteristics of <i>B. longum</i> subspecies in relation to early-life gut colonization. We further implemented machine learning tools to identify significant features associated with <i>B. longum</i> subspecies abundance.</p><p><strong>Results: </strong><i>B. longum</i> subsp. <i>longum</i> was the most abundant and prevalent gut <i>Bifidobacterium</i> at one month, being replaced by <i>B. longum</i> subsp. <i>infantis</i> at six months of age. By utilizing metagenome-assembled genomes (MAGs), we reveal significant differences between and within <i>B. longum</i> subspecies in their potential to break down HMGs. We further combined strain-tracking, meta-pangenomics and machine learning to understand these abundance dynamics and found an interplay of priority effects, milk-feeding type and HMG-utilization potential to govern them across the first six months of life. We find higher abundances of <i>B. longum</i> subsp. <i>longum</i> in the maternal gut microbiome, vertical transmission, breast milk and a broader range of HMG-utilizing genes to promote its abundance at one month of age. Eventually, we find <i>B. longum</i> subsp. <i>longum</i> to be replaced by <i>B. longum</i> subsp. <i>infantis</i> at six months of age due to a combination of nutritional intake, HMG-utilization potential and a diminishment of priority effects.</p><p><strong>Discussion: </strong>Our results establish a strain-level ecological framework explaining early-life abundance dynamics of <i>B. longum</i> subspecies. We highlight the role of priority effects, nutrition and significant variability in HMG-utilization potential in determining the predictable colonization and succession trajectories of <i>B. longum</i> subspecies, with potential implications for promoting infant health and well-being
{"title":"Priority effects, nutrition and milk glycan-metabolic potential drive <i>Bifidobacterium longum</i> subspecies dynamics in the infant gut microbiome.","authors":"Nicholas Pucci, Joanne Ujčič-Voortman, Arnoud P Verhoeff, Daniel R Mende","doi":"10.7717/peerj.18602","DOIUrl":"10.7717/peerj.18602","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;The initial colonization of the infant gut is a complex process that defines the foundation for a healthy microbiome development. &lt;i&gt;Bifidobacterium longum&lt;/i&gt; is one of the first colonizers of newborns' gut, playing a crucial role in the healthy development of both the host and its microbiome. However, &lt;i&gt;B. longum&lt;/i&gt; exhibits significant genomic diversity, with subspecies (&lt;i&gt;e.g., Bifidobacterium longum&lt;/i&gt; subsp. &lt;i&gt;infantis&lt;/i&gt; and subsp. &lt;i&gt;longum&lt;/i&gt;) displaying distinct ecological and metabolic strategies including differential capabilities to break down human milk glycans (HMGs). To promote healthy infant microbiome development, a good understanding of the factors governing infant microbiome dynamics is required.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methodology: &lt;/strong&gt;We analyzed newly sequenced gut microbiome samples of mother-infant pairs from the Amsterdam Infant Microbiome Study (AIMS) and four publicly available datasets to identify important environmental and bifidobacterial features associated with the colonization success and succession outcomes of &lt;i&gt;B. longum&lt;/i&gt; subspecies. Metagenome-assembled genomes (MAGs) were generated and assessed to identify characteristics of &lt;i&gt;B. longum&lt;/i&gt; subspecies in relation to early-life gut colonization. We further implemented machine learning tools to identify significant features associated with &lt;i&gt;B. longum&lt;/i&gt; subspecies abundance.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;&lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;longum&lt;/i&gt; was the most abundant and prevalent gut &lt;i&gt;Bifidobacterium&lt;/i&gt; at one month, being replaced by &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;infantis&lt;/i&gt; at six months of age. By utilizing metagenome-assembled genomes (MAGs), we reveal significant differences between and within &lt;i&gt;B. longum&lt;/i&gt; subspecies in their potential to break down HMGs. We further combined strain-tracking, meta-pangenomics and machine learning to understand these abundance dynamics and found an interplay of priority effects, milk-feeding type and HMG-utilization potential to govern them across the first six months of life. We find higher abundances of &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;longum&lt;/i&gt; in the maternal gut microbiome, vertical transmission, breast milk and a broader range of HMG-utilizing genes to promote its abundance at one month of age. Eventually, we find &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;longum&lt;/i&gt; to be replaced by &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;infantis&lt;/i&gt; at six months of age due to a combination of nutritional intake, HMG-utilization potential and a diminishment of priority effects.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Discussion: &lt;/strong&gt;Our results establish a strain-level ecological framework explaining early-life abundance dynamics of &lt;i&gt;B. longum&lt;/i&gt; subspecies. We highlight the role of priority effects, nutrition and significant variability in HMG-utilization potential in determining the predictable colonization and succession trajectories of &lt;i&gt;B. longum&lt;/i&gt; subspecies, with potential implications for promoting infant health and well-being","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18602"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758915/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SSR marker-based genetic diversity and structure analyses of Camellia nitidissima var. phaeopubisperma from different populations.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18845
Yang-Jiao Xie, Meng-Xue Su, Hui Gao, Guo-Yue Yan, Shuang-Shuang Li, Jin-Mei Chen, Yan-Yuan Bai, Jia-Gang Deng
<p><strong>Background: </strong><i>Camellia nitidissima</i> var. <i>phaeopubisperma</i> is a variety in the section <i>Chrysantha</i> of the genus <i>Camellia</i> of the family Theaceae which is native to Fangchenggang, Guangxi, China. To date, the genetic diversity and structure of this variety remains to be understood.</p><p><strong>Methods: </strong>In the present study, eight simple sequence repeat (SSR) molecular markers previously screened were used to analyze the genetic diversity and structure of <i>C. nitidissima</i> var. <i>phaeopubisperma</i> natural populations from 14 growing areas in China, so as to determine the influence of environmental changes on genetic variations and provide the basis for introduction and selection of suitable growing sites of that variety.</p><p><strong>Results: </strong>Our results show that, for the eight SSR loci, the observed numbers of alleles per locus (<i>Na</i>) and the effective numbers of alleles per locus (<i>Ne</i>) were nine and 3.206, respectively on average, and the <i>Ne</i> was lower than the <i>Na</i> for all loci; the observed heterozygosity (<i>Ho</i>) was lower than the expected heterozygosity (<i>He</i>). For all the eight loci, the fixation index (<i>F</i>) was greater than 0, and the intra-population inbreeding coefficient (<i>Fis</i>) for seven loci was positive. Three loci were moderately polymorphic (0.25 < polymorphism information content (PIC) <0.5), and five loci were highly polymorphic (PIC > 0.5); all eight loci had a moderate genetic differentiation level (0.05 < genetic differentiation coefficient (<i>Fst</i>) <0.25). As shown by the genetic diversity analysis, the <i>He</i> was bigger than the <i>Ho</i> for 10 populations, indicating the presence of a certain degree of intra-population inbreeding. The <i>F</i> had a negative value for four populations, suggesting that excessive random mating was present within each of them. Results of the analysis of molecular variance show that 19% of the total variation was attributed to among-individuals and 78% of the total variation originated from within-individuals. The adjusted <i>Fst</i> (<i>F'st</i>) was 0.073, indicative of a moderate level of genetic differentiation among the populations. The value of gene flow was greater than 1 (7.367), suggesting that genetic differentiation among populations was not caused by genetic drift. Results of the STRUCTURE analysis show that all the samples tested could be clustered into five ancestor groups. Results of the Unweighted Pair Group Method using Arithmetic Averages (UPGMA) clustering analyses show that the 84 plant samples could be divided into three clusters and natural populations from the 14 growing areas could be divided into two clusters. Clustering results of the populations were not affected by geographic distances, and gene flow occurred frequently among the populations, suggesting that the genetic variation among the natural populations of <i>C. nitidissima</i> var. <i>phaeopubi
{"title":"SSR marker-based genetic diversity and structure analyses of <i>Camellia nitidissima</i> var. <i>phaeopubisperma</i> from different populations.","authors":"Yang-Jiao Xie, Meng-Xue Su, Hui Gao, Guo-Yue Yan, Shuang-Shuang Li, Jin-Mei Chen, Yan-Yuan Bai, Jia-Gang Deng","doi":"10.7717/peerj.18845","DOIUrl":"10.7717/peerj.18845","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;&lt;i&gt;Camellia nitidissima&lt;/i&gt; var. &lt;i&gt;phaeopubisperma&lt;/i&gt; is a variety in the section &lt;i&gt;Chrysantha&lt;/i&gt; of the genus &lt;i&gt;Camellia&lt;/i&gt; of the family Theaceae which is native to Fangchenggang, Guangxi, China. To date, the genetic diversity and structure of this variety remains to be understood.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;In the present study, eight simple sequence repeat (SSR) molecular markers previously screened were used to analyze the genetic diversity and structure of &lt;i&gt;C. nitidissima&lt;/i&gt; var. &lt;i&gt;phaeopubisperma&lt;/i&gt; natural populations from 14 growing areas in China, so as to determine the influence of environmental changes on genetic variations and provide the basis for introduction and selection of suitable growing sites of that variety.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;Our results show that, for the eight SSR loci, the observed numbers of alleles per locus (&lt;i&gt;Na&lt;/i&gt;) and the effective numbers of alleles per locus (&lt;i&gt;Ne&lt;/i&gt;) were nine and 3.206, respectively on average, and the &lt;i&gt;Ne&lt;/i&gt; was lower than the &lt;i&gt;Na&lt;/i&gt; for all loci; the observed heterozygosity (&lt;i&gt;Ho&lt;/i&gt;) was lower than the expected heterozygosity (&lt;i&gt;He&lt;/i&gt;). For all the eight loci, the fixation index (&lt;i&gt;F&lt;/i&gt;) was greater than 0, and the intra-population inbreeding coefficient (&lt;i&gt;Fis&lt;/i&gt;) for seven loci was positive. Three loci were moderately polymorphic (0.25 &lt; polymorphism information content (PIC) &lt;0.5), and five loci were highly polymorphic (PIC &gt; 0.5); all eight loci had a moderate genetic differentiation level (0.05 &lt; genetic differentiation coefficient (&lt;i&gt;Fst&lt;/i&gt;) &lt;0.25). As shown by the genetic diversity analysis, the &lt;i&gt;He&lt;/i&gt; was bigger than the &lt;i&gt;Ho&lt;/i&gt; for 10 populations, indicating the presence of a certain degree of intra-population inbreeding. The &lt;i&gt;F&lt;/i&gt; had a negative value for four populations, suggesting that excessive random mating was present within each of them. Results of the analysis of molecular variance show that 19% of the total variation was attributed to among-individuals and 78% of the total variation originated from within-individuals. The adjusted &lt;i&gt;Fst&lt;/i&gt; (&lt;i&gt;F'st&lt;/i&gt;) was 0.073, indicative of a moderate level of genetic differentiation among the populations. The value of gene flow was greater than 1 (7.367), suggesting that genetic differentiation among populations was not caused by genetic drift. Results of the STRUCTURE analysis show that all the samples tested could be clustered into five ancestor groups. Results of the Unweighted Pair Group Method using Arithmetic Averages (UPGMA) clustering analyses show that the 84 plant samples could be divided into three clusters and natural populations from the 14 growing areas could be divided into two clusters. Clustering results of the populations were not affected by geographic distances, and gene flow occurred frequently among the populations, suggesting that the genetic variation among the natural populations of &lt;i&gt;C. nitidissima&lt;/i&gt; var. &lt;i&gt;phaeopubi","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18845"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758913/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047615","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Attaching artificial Achilles and tibialis cranialis tendons to bone using suture anchors in a rabbit model: assessment of outcomes.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18756
Obinna P Fidelis, Caleb Stubbs, Katrina L Easton, Caroline Billings, Alisha P Pedersen, David E Anderson, Dustin L Crouch

Objective: The purpose of this study was to investigate the timing and mode of failure of metallic screw-type suture anchors used to attach artificial tendons to bone in an in vivo New Zealand White rabbit model.

Study design: Metal suture anchors with braided composite sutures of varying sizes (United States Pharmacopeia (USP) size 1, 2, or 5) were used to secure artificial tendons replacing both the Achilles and tibialis cranialis tendons in 12 female New Zealand White rabbits. Artificial tendons were implanted either at the time of (immediate replacement, n = 8), or four/five weeks after (delayed replacement, n = 4) resection of the biological tendon. Hindlimb radiographs of the rabbits were obtained immediately after surgery and approximately every other week until the study endpoint (16 weeks post-surgery).

Results: All suture anchors used for the tibialis cranialis artificial tendons remained secure and did not fail during the study. The suture anchor used to attach the Achilles artificial tendon to the calcaneus bone failed in nine of 12 rabbits. In all cases of suture anchor failure, the suture broke away from the knot, while the metallic screw remained securely embedded in the bone. Based on radiographic analysis, the mean estimated failure timepoint was 5.3 ± 2.3 weeks post-surgery, with a range of 2-10 weeks. Statistical analyses (Mann-Whitney U test and Fisher's exact test) revealed no significant effect of tendon implantation timing or suture size on either the timing or frequency of suture anchor failure.

Conclusion: For the suture anchors used to attach artificial tendons in this study, suture anchor failure was most likely due to suture wear or cutting against the eyelet of the anchor screw. Future studies are needed to test the effect of suture-eyelet interaction on suture strength under different loading conditions.

{"title":"Attaching artificial Achilles and tibialis cranialis tendons to bone using suture anchors in a rabbit model: assessment of outcomes.","authors":"Obinna P Fidelis, Caleb Stubbs, Katrina L Easton, Caroline Billings, Alisha P Pedersen, David E Anderson, Dustin L Crouch","doi":"10.7717/peerj.18756","DOIUrl":"10.7717/peerj.18756","url":null,"abstract":"<p><strong>Objective: </strong>The purpose of this study was to investigate the timing and mode of failure of metallic screw-type suture anchors used to attach artificial tendons to bone in an <i>in vivo</i> New Zealand White rabbit model.</p><p><strong>Study design: </strong>Metal suture anchors with braided composite sutures of varying sizes (United States Pharmacopeia (USP) size 1, 2, or 5) were used to secure artificial tendons replacing both the Achilles and tibialis cranialis tendons in 12 female New Zealand White rabbits. Artificial tendons were implanted either at the time of (immediate replacement, <i>n</i> = 8), or four/five weeks after (delayed replacement, <i>n</i> = 4) resection of the biological tendon. Hindlimb radiographs of the rabbits were obtained immediately after surgery and approximately every other week until the study endpoint (16 weeks post-surgery).</p><p><strong>Results: </strong>All suture anchors used for the tibialis cranialis artificial tendons remained secure and did not fail during the study. The suture anchor used to attach the Achilles artificial tendon to the calcaneus bone failed in nine of 12 rabbits. In all cases of suture anchor failure, the suture broke away from the knot, while the metallic screw remained securely embedded in the bone. Based on radiographic analysis, the mean estimated failure timepoint was 5.3 ± 2.3 weeks post-surgery, with a range of 2-10 weeks. Statistical analyses (Mann-Whitney <i>U</i> test and Fisher's exact test) revealed no significant effect of tendon implantation timing or suture size on either the timing or frequency of suture anchor failure.</p><p><strong>Conclusion: </strong>For the suture anchors used to attach artificial tendons in this study, suture anchor failure was most likely due to suture wear or cutting against the eyelet of the anchor screw. Future studies are needed to test the effect of suture-eyelet interaction on suture strength under different loading conditions.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18756"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758910/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047597","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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