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Turkish validation of a resilience scale from older people's perspectives: resilience scale for older adults.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18837
Seher Palanbek Yavaş, Caner Baysan

Background: As the global population ages and life expectancy increases, older adults encounter challenges like chronic illnesses and losing loved ones; resilience is crucial for adapting to these difficulties. This study aims to culturally and linguistically adapt the psychological resilience scale designed for older adults to the Turkish context.

Methods: This methodological study included 566 individuals aged 65 and older. All participants completed the Resilience Scale for Older Adults, the Perceived Stress Scale, the Geriatric Depression Scale, and the Quality of Life in Older Adults Scale-Short Form. Construct validity was assessed through confirmatory and exploratory factor analyses, while convergent and discriminant validity were evaluated through the correlation of the scales. Reliability was determined using internal consistency and the split-half method.

Results: The scale retains its original structure with 33 items and four sub-dimensions (Intrapersonal, Interpersonal, Spiritual, and Experiential). The content validity index of the scale is 0.98, with item loadings ranging from 0.406 to 0.947, according to exploratory factor analysis. Confirmatory factor analysis indicates good fit indices. Convergent validity is supported by a strong positive correlation (r = 0.657, p < 0.001) between the Resilience Scale for Older Adults and the Quality of Life in Older Adults Scale-Short Form. Reliability measures include a Cronbach's alpha internal consistency coefficient of 0.93 and a Guttman split-half reliability coefficient of 0.723.

Conclusion: The results show that the Turkish version of the Resilience Scale for Older Adults is a valid and reliable measurement tool.

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引用次数: 0
Melatonin attenuates MPP+-induced autophagy via heat shock protein in the Parkinson's disease mouse model.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18788
Yinli Guo, Chengbo Liu

Background: This study investigates the protective properties of melatonin in an in vivo Parkinson's disease (PD) model, focusing on the underlying mechanisms involving heat shock proteins (HSPs).

Methods: Twelve adult male C57BL/6 mice were randomly divided into four groups (normal control, melatonin control, Parkinson's model, and melatonin treatment; n = 3 per group) and housed in a single cage. 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) was injected intraperitoneally in the Parkinson's model and treatment groups to establish a subacute PD model, while controls received saline. Limb motor ability was assessed 1 h after the final injection using behavioral tests, including the open field test to evaluate central zone entries and average movement. Dopamine transporter (DAT) expression in the striatum was analyzed by immunohistochemistry, and Western blot was used to measure autophagy proteins and HSP70 levels.

Results: The PD mouse model was successfully established through MPTP stimulation. Compared to the normal control group, the model group showed a significant reduction in the frequency of entering the central zone and average movement. The number of DAT-positive cells in the brain also decreased significantly. The expression levels of HSP70 and CDK5 were significantly lower, while the expression levels of LC3 II /LC3I and p62 increased significantly. In the MT treatment group, both the frequency of entering the central zone and the average movement were significantly higher compared to the model group. DAT-positive cells in the midbrain also increased significantly. The expression levels of HSP70 and CDK5 were significantly elevated, while the expression levels of LC3 II /LC3I and p62 protein were significantly decreased.

Conclusion: Melatonin exerts a protective effect against MPP+-induced damage to dopaminergic neurons, presumably by upregulating HSP70, which inhibits neuronal autophagy.

背景:本研究调查了褪黑素在体内帕金森病(PD)模型中的保护特性,重点是涉及热休克蛋白(HSPs)的潜在机制:本研究调查了褪黑素在体内帕金森病(PD)模型中的保护特性,重点是涉及热休克蛋白(HSPs)的潜在机制:将12只成年雄性C57BL/6小鼠随机分为四组(正常对照组、褪黑素对照组、帕金森病模型组和褪黑素治疗组;每组n=3),并饲养在一个笼子中。帕金森模型组和治疗组腹腔注射 1-甲基-4-苯基-1,2,3,6-四氢吡啶(MPTP)以建立亚急性帕金森病模型,对照组则注射生理盐水。最后一次注射1小时后,使用行为测试评估肢体运动能力,包括评估中心区进入和平均运动的开阔地测试。用免疫组化方法分析纹状体中多巴胺转运体(DAT)的表达,并用Western印迹法测定自噬蛋白和HSP70的水平:结果:通过MPTP刺激成功建立了帕金森病小鼠模型。与正常对照组相比,模型组小鼠进入中心区的频率和平均移动次数明显减少。脑内DAT阳性细胞的数量也明显减少。HSP70和CDK5的表达水平明显降低,而LC3 II /LC3I和p62的表达水平明显升高。与模型组相比,MT 治疗组进入中心区的频率和平均移动次数均明显增加。中脑的DAT阳性细胞也明显增加。HSP70和CDK5的表达水平明显升高,而LC3 II /LC3I和p62蛋白的表达水平则明显下降:结论:褪黑素对MPP+诱导的多巴胺能神经元损伤具有保护作用,可能是通过上调HSP70抑制神经元自噬。
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引用次数: 0
Priority effects, nutrition and milk glycan-metabolic potential drive Bifidobacterium longum subspecies dynamics in the infant gut microbiome.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18602
Nicholas Pucci, Joanne Ujčič-Voortman, Arnoud P Verhoeff, Daniel R Mende
<p><strong>Background: </strong>The initial colonization of the infant gut is a complex process that defines the foundation for a healthy microbiome development. <i>Bifidobacterium longum</i> is one of the first colonizers of newborns' gut, playing a crucial role in the healthy development of both the host and its microbiome. However, <i>B. longum</i> exhibits significant genomic diversity, with subspecies (<i>e.g., Bifidobacterium longum</i> subsp. <i>infantis</i> and subsp. <i>longum</i>) displaying distinct ecological and metabolic strategies including differential capabilities to break down human milk glycans (HMGs). To promote healthy infant microbiome development, a good understanding of the factors governing infant microbiome dynamics is required.</p><p><strong>Methodology: </strong>We analyzed newly sequenced gut microbiome samples of mother-infant pairs from the Amsterdam Infant Microbiome Study (AIMS) and four publicly available datasets to identify important environmental and bifidobacterial features associated with the colonization success and succession outcomes of <i>B. longum</i> subspecies. Metagenome-assembled genomes (MAGs) were generated and assessed to identify characteristics of <i>B. longum</i> subspecies in relation to early-life gut colonization. We further implemented machine learning tools to identify significant features associated with <i>B. longum</i> subspecies abundance.</p><p><strong>Results: </strong><i>B. longum</i> subsp. <i>longum</i> was the most abundant and prevalent gut <i>Bifidobacterium</i> at one month, being replaced by <i>B. longum</i> subsp. <i>infantis</i> at six months of age. By utilizing metagenome-assembled genomes (MAGs), we reveal significant differences between and within <i>B. longum</i> subspecies in their potential to break down HMGs. We further combined strain-tracking, meta-pangenomics and machine learning to understand these abundance dynamics and found an interplay of priority effects, milk-feeding type and HMG-utilization potential to govern them across the first six months of life. We find higher abundances of <i>B. longum</i> subsp. <i>longum</i> in the maternal gut microbiome, vertical transmission, breast milk and a broader range of HMG-utilizing genes to promote its abundance at one month of age. Eventually, we find <i>B. longum</i> subsp. <i>longum</i> to be replaced by <i>B. longum</i> subsp. <i>infantis</i> at six months of age due to a combination of nutritional intake, HMG-utilization potential and a diminishment of priority effects.</p><p><strong>Discussion: </strong>Our results establish a strain-level ecological framework explaining early-life abundance dynamics of <i>B. longum</i> subspecies. We highlight the role of priority effects, nutrition and significant variability in HMG-utilization potential in determining the predictable colonization and succession trajectories of <i>B. longum</i> subspecies, with potential implications for promoting infant health and well-being
{"title":"Priority effects, nutrition and milk glycan-metabolic potential drive <i>Bifidobacterium longum</i> subspecies dynamics in the infant gut microbiome.","authors":"Nicholas Pucci, Joanne Ujčič-Voortman, Arnoud P Verhoeff, Daniel R Mende","doi":"10.7717/peerj.18602","DOIUrl":"10.7717/peerj.18602","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;The initial colonization of the infant gut is a complex process that defines the foundation for a healthy microbiome development. &lt;i&gt;Bifidobacterium longum&lt;/i&gt; is one of the first colonizers of newborns' gut, playing a crucial role in the healthy development of both the host and its microbiome. However, &lt;i&gt;B. longum&lt;/i&gt; exhibits significant genomic diversity, with subspecies (&lt;i&gt;e.g., Bifidobacterium longum&lt;/i&gt; subsp. &lt;i&gt;infantis&lt;/i&gt; and subsp. &lt;i&gt;longum&lt;/i&gt;) displaying distinct ecological and metabolic strategies including differential capabilities to break down human milk glycans (HMGs). To promote healthy infant microbiome development, a good understanding of the factors governing infant microbiome dynamics is required.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methodology: &lt;/strong&gt;We analyzed newly sequenced gut microbiome samples of mother-infant pairs from the Amsterdam Infant Microbiome Study (AIMS) and four publicly available datasets to identify important environmental and bifidobacterial features associated with the colonization success and succession outcomes of &lt;i&gt;B. longum&lt;/i&gt; subspecies. Metagenome-assembled genomes (MAGs) were generated and assessed to identify characteristics of &lt;i&gt;B. longum&lt;/i&gt; subspecies in relation to early-life gut colonization. We further implemented machine learning tools to identify significant features associated with &lt;i&gt;B. longum&lt;/i&gt; subspecies abundance.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;&lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;longum&lt;/i&gt; was the most abundant and prevalent gut &lt;i&gt;Bifidobacterium&lt;/i&gt; at one month, being replaced by &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;infantis&lt;/i&gt; at six months of age. By utilizing metagenome-assembled genomes (MAGs), we reveal significant differences between and within &lt;i&gt;B. longum&lt;/i&gt; subspecies in their potential to break down HMGs. We further combined strain-tracking, meta-pangenomics and machine learning to understand these abundance dynamics and found an interplay of priority effects, milk-feeding type and HMG-utilization potential to govern them across the first six months of life. We find higher abundances of &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;longum&lt;/i&gt; in the maternal gut microbiome, vertical transmission, breast milk and a broader range of HMG-utilizing genes to promote its abundance at one month of age. Eventually, we find &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;longum&lt;/i&gt; to be replaced by &lt;i&gt;B. longum&lt;/i&gt; subsp. &lt;i&gt;infantis&lt;/i&gt; at six months of age due to a combination of nutritional intake, HMG-utilization potential and a diminishment of priority effects.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Discussion: &lt;/strong&gt;Our results establish a strain-level ecological framework explaining early-life abundance dynamics of &lt;i&gt;B. longum&lt;/i&gt; subspecies. We highlight the role of priority effects, nutrition and significant variability in HMG-utilization potential in determining the predictable colonization and succession trajectories of &lt;i&gt;B. longum&lt;/i&gt; subspecies, with potential implications for promoting infant health and well-being","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18602"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758915/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SSR marker-based genetic diversity and structure analyses of Camellia nitidissima var. phaeopubisperma from different populations.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18845
Yang-Jiao Xie, Meng-Xue Su, Hui Gao, Guo-Yue Yan, Shuang-Shuang Li, Jin-Mei Chen, Yan-Yuan Bai, Jia-Gang Deng
<p><strong>Background: </strong><i>Camellia nitidissima</i> var. <i>phaeopubisperma</i> is a variety in the section <i>Chrysantha</i> of the genus <i>Camellia</i> of the family Theaceae which is native to Fangchenggang, Guangxi, China. To date, the genetic diversity and structure of this variety remains to be understood.</p><p><strong>Methods: </strong>In the present study, eight simple sequence repeat (SSR) molecular markers previously screened were used to analyze the genetic diversity and structure of <i>C. nitidissima</i> var. <i>phaeopubisperma</i> natural populations from 14 growing areas in China, so as to determine the influence of environmental changes on genetic variations and provide the basis for introduction and selection of suitable growing sites of that variety.</p><p><strong>Results: </strong>Our results show that, for the eight SSR loci, the observed numbers of alleles per locus (<i>Na</i>) and the effective numbers of alleles per locus (<i>Ne</i>) were nine and 3.206, respectively on average, and the <i>Ne</i> was lower than the <i>Na</i> for all loci; the observed heterozygosity (<i>Ho</i>) was lower than the expected heterozygosity (<i>He</i>). For all the eight loci, the fixation index (<i>F</i>) was greater than 0, and the intra-population inbreeding coefficient (<i>Fis</i>) for seven loci was positive. Three loci were moderately polymorphic (0.25 < polymorphism information content (PIC) <0.5), and five loci were highly polymorphic (PIC > 0.5); all eight loci had a moderate genetic differentiation level (0.05 < genetic differentiation coefficient (<i>Fst</i>) <0.25). As shown by the genetic diversity analysis, the <i>He</i> was bigger than the <i>Ho</i> for 10 populations, indicating the presence of a certain degree of intra-population inbreeding. The <i>F</i> had a negative value for four populations, suggesting that excessive random mating was present within each of them. Results of the analysis of molecular variance show that 19% of the total variation was attributed to among-individuals and 78% of the total variation originated from within-individuals. The adjusted <i>Fst</i> (<i>F'st</i>) was 0.073, indicative of a moderate level of genetic differentiation among the populations. The value of gene flow was greater than 1 (7.367), suggesting that genetic differentiation among populations was not caused by genetic drift. Results of the STRUCTURE analysis show that all the samples tested could be clustered into five ancestor groups. Results of the Unweighted Pair Group Method using Arithmetic Averages (UPGMA) clustering analyses show that the 84 plant samples could be divided into three clusters and natural populations from the 14 growing areas could be divided into two clusters. Clustering results of the populations were not affected by geographic distances, and gene flow occurred frequently among the populations, suggesting that the genetic variation among the natural populations of <i>C. nitidissima</i> var. <i>phaeopubi
{"title":"SSR marker-based genetic diversity and structure analyses of <i>Camellia nitidissima</i> var. <i>phaeopubisperma</i> from different populations.","authors":"Yang-Jiao Xie, Meng-Xue Su, Hui Gao, Guo-Yue Yan, Shuang-Shuang Li, Jin-Mei Chen, Yan-Yuan Bai, Jia-Gang Deng","doi":"10.7717/peerj.18845","DOIUrl":"10.7717/peerj.18845","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;&lt;i&gt;Camellia nitidissima&lt;/i&gt; var. &lt;i&gt;phaeopubisperma&lt;/i&gt; is a variety in the section &lt;i&gt;Chrysantha&lt;/i&gt; of the genus &lt;i&gt;Camellia&lt;/i&gt; of the family Theaceae which is native to Fangchenggang, Guangxi, China. To date, the genetic diversity and structure of this variety remains to be understood.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;In the present study, eight simple sequence repeat (SSR) molecular markers previously screened were used to analyze the genetic diversity and structure of &lt;i&gt;C. nitidissima&lt;/i&gt; var. &lt;i&gt;phaeopubisperma&lt;/i&gt; natural populations from 14 growing areas in China, so as to determine the influence of environmental changes on genetic variations and provide the basis for introduction and selection of suitable growing sites of that variety.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;Our results show that, for the eight SSR loci, the observed numbers of alleles per locus (&lt;i&gt;Na&lt;/i&gt;) and the effective numbers of alleles per locus (&lt;i&gt;Ne&lt;/i&gt;) were nine and 3.206, respectively on average, and the &lt;i&gt;Ne&lt;/i&gt; was lower than the &lt;i&gt;Na&lt;/i&gt; for all loci; the observed heterozygosity (&lt;i&gt;Ho&lt;/i&gt;) was lower than the expected heterozygosity (&lt;i&gt;He&lt;/i&gt;). For all the eight loci, the fixation index (&lt;i&gt;F&lt;/i&gt;) was greater than 0, and the intra-population inbreeding coefficient (&lt;i&gt;Fis&lt;/i&gt;) for seven loci was positive. Three loci were moderately polymorphic (0.25 &lt; polymorphism information content (PIC) &lt;0.5), and five loci were highly polymorphic (PIC &gt; 0.5); all eight loci had a moderate genetic differentiation level (0.05 &lt; genetic differentiation coefficient (&lt;i&gt;Fst&lt;/i&gt;) &lt;0.25). As shown by the genetic diversity analysis, the &lt;i&gt;He&lt;/i&gt; was bigger than the &lt;i&gt;Ho&lt;/i&gt; for 10 populations, indicating the presence of a certain degree of intra-population inbreeding. The &lt;i&gt;F&lt;/i&gt; had a negative value for four populations, suggesting that excessive random mating was present within each of them. Results of the analysis of molecular variance show that 19% of the total variation was attributed to among-individuals and 78% of the total variation originated from within-individuals. The adjusted &lt;i&gt;Fst&lt;/i&gt; (&lt;i&gt;F'st&lt;/i&gt;) was 0.073, indicative of a moderate level of genetic differentiation among the populations. The value of gene flow was greater than 1 (7.367), suggesting that genetic differentiation among populations was not caused by genetic drift. Results of the STRUCTURE analysis show that all the samples tested could be clustered into five ancestor groups. Results of the Unweighted Pair Group Method using Arithmetic Averages (UPGMA) clustering analyses show that the 84 plant samples could be divided into three clusters and natural populations from the 14 growing areas could be divided into two clusters. Clustering results of the populations were not affected by geographic distances, and gene flow occurred frequently among the populations, suggesting that the genetic variation among the natural populations of &lt;i&gt;C. nitidissima&lt;/i&gt; var. &lt;i&gt;phaeopubi","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18845"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758913/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047615","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Attaching artificial Achilles and tibialis cranialis tendons to bone using suture anchors in a rabbit model: assessment of outcomes.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-21 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18756
Obinna P Fidelis, Caleb Stubbs, Katrina L Easton, Caroline Billings, Alisha P Pedersen, David E Anderson, Dustin L Crouch

Objective: The purpose of this study was to investigate the timing and mode of failure of metallic screw-type suture anchors used to attach artificial tendons to bone in an in vivo New Zealand White rabbit model.

Study design: Metal suture anchors with braided composite sutures of varying sizes (United States Pharmacopeia (USP) size 1, 2, or 5) were used to secure artificial tendons replacing both the Achilles and tibialis cranialis tendons in 12 female New Zealand White rabbits. Artificial tendons were implanted either at the time of (immediate replacement, n = 8), or four/five weeks after (delayed replacement, n = 4) resection of the biological tendon. Hindlimb radiographs of the rabbits were obtained immediately after surgery and approximately every other week until the study endpoint (16 weeks post-surgery).

Results: All suture anchors used for the tibialis cranialis artificial tendons remained secure and did not fail during the study. The suture anchor used to attach the Achilles artificial tendon to the calcaneus bone failed in nine of 12 rabbits. In all cases of suture anchor failure, the suture broke away from the knot, while the metallic screw remained securely embedded in the bone. Based on radiographic analysis, the mean estimated failure timepoint was 5.3 ± 2.3 weeks post-surgery, with a range of 2-10 weeks. Statistical analyses (Mann-Whitney U test and Fisher's exact test) revealed no significant effect of tendon implantation timing or suture size on either the timing or frequency of suture anchor failure.

Conclusion: For the suture anchors used to attach artificial tendons in this study, suture anchor failure was most likely due to suture wear or cutting against the eyelet of the anchor screw. Future studies are needed to test the effect of suture-eyelet interaction on suture strength under different loading conditions.

{"title":"Attaching artificial Achilles and tibialis cranialis tendons to bone using suture anchors in a rabbit model: assessment of outcomes.","authors":"Obinna P Fidelis, Caleb Stubbs, Katrina L Easton, Caroline Billings, Alisha P Pedersen, David E Anderson, Dustin L Crouch","doi":"10.7717/peerj.18756","DOIUrl":"10.7717/peerj.18756","url":null,"abstract":"<p><strong>Objective: </strong>The purpose of this study was to investigate the timing and mode of failure of metallic screw-type suture anchors used to attach artificial tendons to bone in an <i>in vivo</i> New Zealand White rabbit model.</p><p><strong>Study design: </strong>Metal suture anchors with braided composite sutures of varying sizes (United States Pharmacopeia (USP) size 1, 2, or 5) were used to secure artificial tendons replacing both the Achilles and tibialis cranialis tendons in 12 female New Zealand White rabbits. Artificial tendons were implanted either at the time of (immediate replacement, <i>n</i> = 8), or four/five weeks after (delayed replacement, <i>n</i> = 4) resection of the biological tendon. Hindlimb radiographs of the rabbits were obtained immediately after surgery and approximately every other week until the study endpoint (16 weeks post-surgery).</p><p><strong>Results: </strong>All suture anchors used for the tibialis cranialis artificial tendons remained secure and did not fail during the study. The suture anchor used to attach the Achilles artificial tendon to the calcaneus bone failed in nine of 12 rabbits. In all cases of suture anchor failure, the suture broke away from the knot, while the metallic screw remained securely embedded in the bone. Based on radiographic analysis, the mean estimated failure timepoint was 5.3 ± 2.3 weeks post-surgery, with a range of 2-10 weeks. Statistical analyses (Mann-Whitney <i>U</i> test and Fisher's exact test) revealed no significant effect of tendon implantation timing or suture size on either the timing or frequency of suture anchor failure.</p><p><strong>Conclusion: </strong>For the suture anchors used to attach artificial tendons in this study, suture anchor failure was most likely due to suture wear or cutting against the eyelet of the anchor screw. Future studies are needed to test the effect of suture-eyelet interaction on suture strength under different loading conditions.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18756"},"PeriodicalIF":2.3,"publicationDate":"2025-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758910/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047597","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Examining ozone effects on the tropical C4 crop Sorghum bicolor.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-20 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18844
Mst Nahid Farha, Flossie Brown, Lucas A Cernusak, Stephen Sitch, Alexander W Cheesman

Ozone (O3), a major air pollutant, can negatively impact plant growth and yield. While O3 impacts have been widely documented in crops such as wheat and soybean, few studies have looked at the effects of O3 on sorghum, a C4 plant and the fifth most important cereal crop worldwide. We exposed grain sorghum (Sorghum bicolor cv. HAT150843) to a range of O3 concentrations (daytime mean O3 concentrations ranged between 20 and 97 ppb) in open-top chambers, and examined how whole plant and leaf morphological traits varied in response to O3 exposure. Results showed no significant impact of realistic O3 exposure on whole plant biomass and its partitioning in sorghum. These findings suggest that sorghum is generally resistant to O3 and should be considered as a favourable crop in O3 polluted regions, while acknowledging further research is needed to understand the mechanistic basis of O3 tolerance in sorghum.

{"title":"Examining ozone effects on the tropical C<sub>4</sub> crop <i>Sorghum bicolor</i>.","authors":"Mst Nahid Farha, Flossie Brown, Lucas A Cernusak, Stephen Sitch, Alexander W Cheesman","doi":"10.7717/peerj.18844","DOIUrl":"10.7717/peerj.18844","url":null,"abstract":"<p><p>Ozone (O<sub>3</sub>), a major air pollutant, can negatively impact plant growth and yield. While O<sub>3</sub> impacts have been widely documented in crops such as wheat and soybean, few studies have looked at the effects of O<sub>3</sub> on sorghum, a C<sub>4</sub> plant and the fifth most important cereal crop worldwide. We exposed grain sorghum (<i>Sorghum bicolor</i> cv. HAT150843) to a range of O<sub>3</sub> concentrations (daytime mean O<sub>3</sub> concentrations ranged between 20 and 97 ppb) in open-top chambers, and examined how whole plant and leaf morphological traits varied in response to O<sub>3</sub> exposure. Results showed no significant impact of realistic O<sub>3</sub> exposure on whole plant biomass and its partitioning in sorghum. These findings suggest that sorghum is generally resistant to O<sub>3</sub> and should be considered as a favourable crop in O<sub>3</sub> polluted regions, while acknowledging further research is needed to understand the mechanistic basis of O<sub>3</sub> tolerance in sorghum.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18844"},"PeriodicalIF":2.3,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11756361/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143029143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antibiotic exposure enriches streptococci carrying resistance genes in periodontitis plaque biofilms.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-20 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18835
Qian Zhang, Min Zhen, Xiaochen Wang, FengXiang Zhao, Yang Dong, Xiaoya Wang, Shengtao Gao, Jinfeng Wang, Wenyu Shi, Yifei Zhang

Background: Periodontitis is not always satisfactorily treated with conventional scaling and root planing, and adjunctive use of antibiotics is required in clinical practice. Therefore, it is important for clinicians to understand the diversity and the antibiotic resistance of subgingival microbiota when exposed to different antibiotics.

Materials and methods: In this study, subgingival plaques were collected from 10 periodontitis patients and 11 periodontally healthy volunteers, and their microbiota response to selective pressure of four antibiotics (amoxicillin, metronidazole, clindamycin, and tetracycline) were evaluated through 16S rRNA gene amplicon and metagenomic sequencing analysis. Additionally, sensitive and resistant strains were isolated and cultured in vitro for resistance evaluation.

Results: Cultivation of subgingival microbiota revealed the oral microbiota from periodontitis patients were more resistant to antibiotics than that of healthy. Significant differences were also observed for the microbial community between with and without antibiotics (especially amoxicillin and tetracycline) treated in periodontitis group.

Conclusion: Overall, after the two antibiotics (amoxicillin and tetracycline) exposed, the oral subgingival microbiota in periodontitis patients exhibited different diversity and composition. Streptococcus may account for oral biofilm-specific antibiotic resistance in periodontitis. This provides information for personalized treatment of periodontitis.

{"title":"Antibiotic exposure enriches streptococci carrying resistance genes in periodontitis plaque biofilms.","authors":"Qian Zhang, Min Zhen, Xiaochen Wang, FengXiang Zhao, Yang Dong, Xiaoya Wang, Shengtao Gao, Jinfeng Wang, Wenyu Shi, Yifei Zhang","doi":"10.7717/peerj.18835","DOIUrl":"10.7717/peerj.18835","url":null,"abstract":"<p><strong>Background: </strong>Periodontitis is not always satisfactorily treated with conventional scaling and root planing, and adjunctive use of antibiotics is required in clinical practice. Therefore, it is important for clinicians to understand the diversity and the antibiotic resistance of subgingival microbiota when exposed to different antibiotics.</p><p><strong>Materials and methods: </strong>In this study, subgingival plaques were collected from 10 periodontitis patients and 11 periodontally healthy volunteers, and their microbiota response to selective pressure of four antibiotics (amoxicillin, metronidazole, clindamycin, and tetracycline) were evaluated through 16S rRNA gene amplicon and metagenomic sequencing analysis. Additionally, sensitive and resistant strains were isolated and cultured <i>in vitro</i> for resistance evaluation.</p><p><strong>Results: </strong>Cultivation of subgingival microbiota revealed the oral microbiota from periodontitis patients were more resistant to antibiotics than that of healthy. Significant differences were also observed for the microbial community between with and without antibiotics (especially amoxicillin and tetracycline) treated in periodontitis group.</p><p><strong>Conclusion: </strong>Overall, after the two antibiotics (amoxicillin and tetracycline) exposed, the oral subgingival microbiota in periodontitis patients exhibited different diversity and composition. <i>Streptococcus</i> may account for oral biofilm-specific antibiotic resistance in periodontitis. This provides information for personalized treatment of periodontitis.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18835"},"PeriodicalIF":2.3,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11756365/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143029198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Insights in biomarkers complexity and routine clinical practice for the diagnosis of thyroid nodules and cancer.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-20 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18801
Maria de Lurdes Godinho de Matos, Mafalda Pinto, Ana Gonçalves, Sule Canberk, Maria João Martins Bugalho, Paula Soares

Background: The differential diagnosis between benign and malignant thyroid nodules continues to be a major challenge in clinical practice. The rising incidence of thyroid neoplasm and the low incidence of aggressive thyroid carcinoma, urges the exploration of strategies to improve the diagnostic accuracy in a pre-surgical phase, particularly for indeterminate nodules, and to prevent unnecessary surgeries. Only in 2022, the 5th WHO Classification of Endocrine and Neuroendocrine Tumors, and in 2023, the 3rd Bethesda System for Reporting Thyroid Cytopathology and the European Thyroid Association included biomarkers in their guidelines. In this review, we discuss the integration of biomarkers within the routine clinical practice for diagnosis of thyroid nodules and cancer.

Methodology: The literature search for this review was performed through Pub Med, Science Direct, and Google Scholar. We selected 156 publications with significant contributions to this topic, with the majority (86, or 55.1%) published between January 2019 and March 2024, including some publications from our group during those periods. The inclusion criteria were based on articles published in recognized scientific journals with high contributions to the proposed topic. We excluded articles not emphasizing molecular biomarkers in refine the pre-surgical diagnosis of thyroid nodules.

Results: We explored genetic biomarkers, considering the division of thyroid neoplasm into BRAF-like tumor and RAS-like tumor. The specificity of BRAF mutation in the diagnosis of papillary thyroid carcinoma (PTC) is nearly 100% but its sensitivity is below 35%. RAS mutations are found in a broad spectrum of thyroid neoplasm, from benign to malignant follicular-patterned tumors, but do not increase the ability to distinguish benign from malignant lesions. The overexpression of miRNAs is correlated with tumor aggressiveness, high tumor node metastasis (TMN) stage, and recurrence, representing a real signature of thyroid cancer, particularly PTC. In addition, associations between the expression levels of selected miRNAs and the presence of specific genetic mutations have been related with aggressiveness and worse prognosis.

Conclusions: The knowledge of genetic and molecular biomarkers has achieved a high level of complexity, and the difficulties related to its applicability determine that their implementation in clinical practice is not yet a reality. More studies with larger series are needed to optimize their use in routine practice. Additionally, the improvement of new techniques, such as liquid biopsy and/or artificial intelligence, may be the future for a better understanding of molecular biomarkers in thyroid nodular disease.

{"title":"Insights in biomarkers complexity and routine clinical practice for the diagnosis of thyroid nodules and cancer.","authors":"Maria de Lurdes Godinho de Matos, Mafalda Pinto, Ana Gonçalves, Sule Canberk, Maria João Martins Bugalho, Paula Soares","doi":"10.7717/peerj.18801","DOIUrl":"10.7717/peerj.18801","url":null,"abstract":"<p><strong>Background: </strong>The differential diagnosis between benign and malignant thyroid nodules continues to be a major challenge in clinical practice. The rising incidence of thyroid neoplasm and the low incidence of aggressive thyroid carcinoma, urges the exploration of strategies to improve the diagnostic accuracy in a pre-surgical phase, particularly for indeterminate nodules, and to prevent unnecessary surgeries. Only in 2022, the 5th WHO Classification of Endocrine and Neuroendocrine Tumors, and in 2023, the 3rd Bethesda System for Reporting Thyroid Cytopathology and the European Thyroid Association included biomarkers in their guidelines. In this review, we discuss the integration of biomarkers within the routine clinical practice for diagnosis of thyroid nodules and cancer.</p><p><strong>Methodology: </strong>The literature search for this review was performed through Pub Med, Science Direct, and Google Scholar. We selected 156 publications with significant contributions to this topic, with the majority (86, or 55.1%) published between January 2019 and March 2024, including some publications from our group during those periods. The inclusion criteria were based on articles published in recognized scientific journals with high contributions to the proposed topic. We excluded articles not emphasizing molecular biomarkers in refine the pre-surgical diagnosis of thyroid nodules.</p><p><strong>Results: </strong>We explored genetic biomarkers, considering the division of thyroid neoplasm into <i>BRAF</i>-like tumor and <i>RAS</i>-like tumor. The specificity of <i>BRAF</i> mutation in the diagnosis of papillary thyroid carcinoma (PTC) is nearly 100% but its sensitivity is below 35%. <i>RAS</i> mutations are found in a broad spectrum of thyroid neoplasm, from benign to malignant follicular-patterned tumors, but do not increase the ability to distinguish benign from malignant lesions. The overexpression of miRNAs is correlated with tumor aggressiveness, high tumor node metastasis (TMN) stage, and recurrence, representing a real signature of thyroid cancer, particularly PTC. In addition, associations between the expression levels of selected miRNAs and the presence of specific genetic mutations have been related with aggressiveness and worse prognosis.</p><p><strong>Conclusions: </strong>The knowledge of genetic and molecular biomarkers has achieved a high level of complexity, and the difficulties related to its applicability determine that their implementation in clinical practice is not yet a reality. More studies with larger series are needed to optimize their use in routine practice. Additionally, the improvement of new techniques, such as liquid biopsy and/or artificial intelligence, may be the future for a better understanding of molecular biomarkers in thyroid nodular disease.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18801"},"PeriodicalIF":2.3,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11756370/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143029272","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Targeted correction of megabase-scale CNTN6 duplication in induced pluripotent stem cells and impacts on gene expression.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-20 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18567
Maria Gridina, Polina Orlova, Oleg Serov

Copy number variations of the human CNTN6 gene, resulting from megabase-scale microdeletions or microduplications in the 3p26.3 region, are frequently implicated in neurodevelopmental disorders such as intellectual disability and developmental delay. However, duplication of the full-length human CNTN6 gene presents with variable penetrance, resulting in phenotypes that range from neurodevelopmental disorders to no visible pathologies, even within the same family. Previously, we obtained a set of induced pluripotent stem cell lines derived from a patient with a CNTN6 gene duplication and from two healthy donors. Our findings demonstrated that CNTN6 expression in neurons carrying the duplication was significantly reduced. Additionally, the expression from the CNTN6 duplicated allele was markedly lower compared to the wild-type allele. Here, we first introduce a system for correcting megabase-scale duplications in induced pluripotent stem cells and secondly analyze the impact of this correction on CNTN6 gene expression. We showed that the deletion of one copy of the CNTN6 duplication did not affect the expression levels of the remaining allele in the neuronal cells.

{"title":"Targeted correction of megabase-scale <i>CNTN6</i> duplication in induced pluripotent stem cells and impacts on gene expression.","authors":"Maria Gridina, Polina Orlova, Oleg Serov","doi":"10.7717/peerj.18567","DOIUrl":"10.7717/peerj.18567","url":null,"abstract":"<p><p>Copy number variations of the human <i>CNTN6</i> gene, resulting from megabase-scale microdeletions or microduplications in the 3p26.3 region, are frequently implicated in neurodevelopmental disorders such as intellectual disability and developmental delay. However, duplication of the full-length human <i>CNTN6</i> gene presents with variable penetrance, resulting in phenotypes that range from neurodevelopmental disorders to no visible pathologies, even within the same family. Previously, we obtained a set of induced pluripotent stem cell lines derived from a patient with a <i>CNTN6</i> gene duplication and from two healthy donors. Our findings demonstrated that <i>CNTN6</i> expression in neurons carrying the duplication was significantly reduced. Additionally, the expression from the <i>CNTN6</i> duplicated allele was markedly lower compared to the wild-type allele. Here, we first introduce a system for correcting megabase-scale duplications in induced pluripotent stem cells and secondly analyze the impact of this correction on <i>CNTN6</i> gene expression. We showed that the deletion of one copy of the <i>CNTN6</i> duplication did not affect the expression levels of the remaining allele in the neuronal cells.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18567"},"PeriodicalIF":2.3,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11756360/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143029284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of urinary density as a biomarker for the diagnosis of acute heart failure.
IF 2.3 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES Pub Date : 2025-01-20 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.18836
Mustafa Ahmet Akçalı, Semih Çınar, Kemal Abid Tekin, Recep Murat Mert, Sena Erduhan, Ertuğ Dinçer, Yusuf Altunöz, Arif Aksu, Esra Akçalı

Background: Heart failure (HF) has become a public healthcare concern with significant costs to countries because of the aging world population. Acute heart failure (AHF) is a common condition faced frequently in emergency departments, and patients often present to hospitals with complaints of breathlessness. The patient must be evaluated with anamnesis, physical examination, blood, and imaging results to diagnose AHF. Brain natriuretic peptide (BNP) is a widely accepted biomarker for the diagnosis of HF.

Methods: The files of the patients who applied to the emergency department with complaints of breathlessness were scanned, and BNP and urinary density (UD) levels were evaluated for the diagnosis of HF in patients.

Results: The results support that BNP is an effective biomarker in AHF, as is widely accepted. When the correlation between BNP and UD measurements was examined in the present study, a negative correlation was detected between the parameters. The results also suggested that low UD values may help diagnose AHF.

Conclusion: If similar results are obtained in prospective multicenter studies with the participation of more patients, UD value can be used as a biomarker for the diagnosis of AHF.

{"title":"Evaluation of urinary density as a biomarker for the diagnosis of acute heart failure.","authors":"Mustafa Ahmet Akçalı, Semih Çınar, Kemal Abid Tekin, Recep Murat Mert, Sena Erduhan, Ertuğ Dinçer, Yusuf Altunöz, Arif Aksu, Esra Akçalı","doi":"10.7717/peerj.18836","DOIUrl":"10.7717/peerj.18836","url":null,"abstract":"<p><strong>Background: </strong>Heart failure (HF) has become a public healthcare concern with significant costs to countries because of the aging world population. Acute heart failure (AHF) is a common condition faced frequently in emergency departments, and patients often present to hospitals with complaints of breathlessness. The patient must be evaluated with anamnesis, physical examination, blood, and imaging results to diagnose AHF. Brain natriuretic peptide (BNP) is a widely accepted biomarker for the diagnosis of HF.</p><p><strong>Methods: </strong>The files of the patients who applied to the emergency department with complaints of breathlessness were scanned, and BNP and urinary density (UD) levels were evaluated for the diagnosis of HF in patients.</p><p><strong>Results: </strong>The results support that BNP is an effective biomarker in AHF, as is widely accepted. When the correlation between BNP and UD measurements was examined in the present study, a negative correlation was detected between the parameters. The results also suggested that low UD values may help diagnose AHF.</p><p><strong>Conclusion: </strong>If similar results are obtained in prospective multicenter studies with the participation of more patients, UD value can be used as a biomarker for the diagnosis of AHF.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e18836"},"PeriodicalIF":2.3,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11756357/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143029140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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