Biological control provides an eco-friendly alternative to disease control. However, the host-mediated resistance mechanism conferred by beneficial bacteria is limited. This study aimed to evaluate the potential role of a beneficial bacterium natively isolated from the rhizosphere soil of a resistant banana mutant in mitigating the severity caused by Fusarium oxysporum f. sp. cubense race 1 (Foc 1) infection, as well as the potential mechanism underlying. The identified strain 4–28 (Bacillus velezensis) not only enhanced banana biomass and photosynthesis, but also achieved 61.73% control efficacy against Foc 1 by reducing H2O2 accumulation through the activation of antioxidant enzyme activities in banana plants. Following 4–28 inoculation, the most significantly enriched GO items were relevant to cell wall, defense and photosynthesis. Notably, both 4–28 and Foc 1 treatments caused extensive cell wall related gene expression. When compared to Foc 1, 4–28 induced fewer cell wall related genes, especially HRGPs. Alignment with RNA-Seq results, 4–28 inoculation decreased the level of AGPs, pectin and hemicellulose recognized by JIM16, JIM5, CCRC-M87 and LM21 antibodies, respectively. In addition, 4–28 inoculation decreased the contents of pectin, hemicellulose and cellulose in banana upon Foc 1 infection but elevated highly methyl-esterified homogalacturonan recognized by JIM7 and LM20 antibodies, the degree of methyl esterification of pectin, which was opposite to the response observed under Foc 1 infection. Our findings provided a foundation for further field use of strain 4–28 in biologically controlling banana Fusarium wilt and offer new insights into the biological control mechanisms related host cell wall remodeling.
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