首页 > 最新文献

Pharmaceutical Statistics最新文献

英文 中文
Tree-temporal scan statistics for safety signal detection in vaccine clinical trials 用于疫苗临床试验安全信号检测的树状时序扫描统计
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-15 DOI: 10.1002/pst.2391
François Haguinet, Fabian Tibaldi, Christophe Dessart, Andrew Bate
The evaluation of safety is critical in all clinical trials. However, the quantitative analysis of safety data in clinical trials poses statistical difficulties because of multiple potentially overlapping endpoints. Tree-temporal scan statistic approaches address this issue and have been widely employed in other data sources, but not to date in clinical trials. We evaluated the performance of three complementary scan statistical methods for routine quantitative safety signal detection: the self-controlled tree-temporal scan (SCTTS), a tree-temporal scan based on group comparison (BGTTS), and a log-rank based tree-temporal scan (LgRTTS). Each method was evaluated using data from two phase III clinical trials, and simulated data (simulation study). In the case study, the reference set was adverse events (AEs) in the Reference Safety Information of the evaluated vaccine. The SCTTS method had higher sensitivity than other methods, and after dose 1 detected 80 true positives (TP) with a positive predictive value (PPV) of 60%. The LgRTTS detected 49 TPs with 69% PPV. The BGTTS had 90% of PPV with 38 TPs. In the simulation study, with simulated reference sets of AEs, the SCTTS method had good sensitivity to detect transient effects. The LgRTTS method showed the best performance for the detection of persistent effects, with high sensitivity and expected probability of type I error. These three methods provide complementary approaches to safety signal detection in clinical trials or across clinical development programmes. All three methods formally adjust for multiple testing of large numbers of overlapping endpoints without being excessively conservative.
安全性评估在所有临床试验中都至关重要。然而,由于存在多个可能重叠的终点,临床试验中安全性数据的定量分析在统计学上存在困难。树状时空扫描统计方法可以解决这一问题,并已广泛应用于其他数据源,但迄今为止尚未应用于临床试验。我们评估了用于常规定量安全信号检测的三种互补扫描统计方法的性能:自控树状时空扫描(SCTTS)、基于组间比较的树状时空扫描(BGTTS)和基于对数秩的树状时空扫描(LgRTTS)。每种方法都使用两项 III 期临床试验的数据和模拟数据(模拟研究)进行了评估。在案例研究中,参考集是被评估疫苗的参考安全信息中的不良事件(AEs)。SCTTS 方法的灵敏度高于其他方法,在剂量 1 后检测出 80 个真阳性 (TP),阳性预测值 (PPV) 为 60%。LgRTTS 检测出 49 个 TP,PPV 为 69%。BGTTS 检测出 38 个 TP,PPV 为 90%。在模拟研究中,利用模拟的 AEs 参考集,SCTTS 方法在检测瞬时效应方面具有良好的灵敏度。LgRTTS 方法在检测持续效应方面表现最佳,灵敏度高,预期 I 型错误概率也高。这三种方法为临床试验或整个临床开发计划中的安全信号检测提供了互补方法。这三种方法都能对大量重叠终点的多重测试进行正式调整,而不会过于保守。
{"title":"Tree-temporal scan statistics for safety signal detection in vaccine clinical trials","authors":"François Haguinet, Fabian Tibaldi, Christophe Dessart, Andrew Bate","doi":"10.1002/pst.2391","DOIUrl":"https://doi.org/10.1002/pst.2391","url":null,"abstract":"The evaluation of safety is critical in all clinical trials. However, the quantitative analysis of safety data in clinical trials poses statistical difficulties because of multiple potentially overlapping endpoints. Tree-temporal scan statistic approaches address this issue and have been widely employed in other data sources, but not to date in clinical trials. We evaluated the performance of three complementary scan statistical methods for routine quantitative safety signal detection: the self-controlled tree-temporal scan (SCTTS), a tree-temporal scan based on group comparison (BGTTS), and a log-rank based tree-temporal scan (LgRTTS). Each method was evaluated using data from two phase III clinical trials, and simulated data (simulation study). In the case study, the reference set was adverse events (AEs) in the Reference Safety Information of the evaluated vaccine. The SCTTS method had higher sensitivity than other methods, and after dose 1 detected 80 true positives (TP) with a positive predictive value (PPV) of 60%. The LgRTTS detected 49 TPs with 69% PPV. The BGTTS had 90% of PPV with 38 TPs. In the simulation study, with simulated reference sets of AEs, the SCTTS method had good sensitivity to detect transient effects. The LgRTTS method showed the best performance for the detection of persistent effects, with high sensitivity and expected probability of type I error. These three methods provide complementary approaches to safety signal detection in clinical trials or across clinical development programmes. All three methods formally adjust for multiple testing of large numbers of overlapping endpoints without being excessively conservative.","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140563123","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mathematical programming tools for randomization purposes in small two‐arm clinical trials: A case study with real data 用于小型双臂临床试验随机化的数学编程工具:真实数据案例研究
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-13 DOI: 10.1002/pst.2388
Alan R. Vazquez, Weng‐Kee Wong
Modern randomization methods in clinical trials are invariably adaptive, meaning that the assignment of the next subject to a treatment group uses the accumulated information in the trial. Some of the recent adaptive randomization methods use mathematical programming to construct attractive clinical trials that balance the group features, such as their sizes and covariate distributions of their subjects. We review some of these methods and compare their performance with common covariate‐adaptive randomization methods for small clinical trials. We introduce an energy distance measure that compares the discrepancy between the two groups using the joint distribution of the subjects' covariates. This metric is more appealing than evaluating the discrepancy between the groups using their marginal covariate distributions. Using numerical experiments, we demonstrate the advantages of the mathematical programming methods under the new measure. In the supplementary material, we provide R codes to reproduce our study results and facilitate comparisons of different randomization procedures.
临床试验中的现代随机化方法无一例外都是自适应的,也就是说,在将下一个受试者分配到治疗组时,会使用试验中积累的信息。最近的一些自适应随机化方法使用数学编程来构建有吸引力的临床试验,以平衡治疗组的特征,如治疗组的规模和受试者的协变量分布。我们回顾了其中一些方法,并将它们的性能与小型临床试验中常见的协变量自适应随机化方法进行了比较。我们引入了一种能量距离测量方法,利用受试者协变量的联合分布来比较两组之间的差异。与使用受试者的边际协变量分布来评估两组之间的差异相比,这种度量方法更具吸引力。通过数值实验,我们证明了数学编程方法在新指标下的优势。在补充材料中,我们提供了 R 代码来重现我们的研究结果,并方便比较不同的随机化程序。
{"title":"Mathematical programming tools for randomization purposes in small two‐arm clinical trials: A case study with real data","authors":"Alan R. Vazquez, Weng‐Kee Wong","doi":"10.1002/pst.2388","DOIUrl":"https://doi.org/10.1002/pst.2388","url":null,"abstract":"Modern randomization methods in clinical trials are invariably adaptive, meaning that the assignment of the next subject to a treatment group uses the accumulated information in the trial. Some of the recent adaptive randomization methods use mathematical programming to construct attractive clinical trials that balance the group features, such as their sizes and covariate distributions of their subjects. We review some of these methods and compare their performance with common covariate‐adaptive randomization methods for small clinical trials. We introduce an energy distance measure that compares the discrepancy between the two groups using the joint distribution of the subjects' covariates. This metric is more appealing than evaluating the discrepancy between the groups using their marginal covariate distributions. Using numerical experiments, we demonstrate the advantages of the mathematical programming methods under the new measure. In the supplementary material, we provide R codes to reproduce our study results and facilitate comparisons of different randomization procedures.","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140563093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Predictive Ppk calculations for biologics and vaccines using a Bayesian approach – a tutorial 使用贝叶斯方法对生物制剂和疫苗进行预测性 Ppk 计算--教程
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-11 DOI: 10.1002/pst.2380
Jos Weusten, Jianfang Hu
In pharmaceutical manufacturing, especially biologics and vaccines manufacturing, emphasis on speedy process development can lead to inadequate process development, which often results in less robust commercial manufacturing process after launch. Process performance index (Ppk) is a statistical measurement of the ability of a process to produce output within specification limits over a period of time. In biopharmaceutical manufacturing, progression in process development is based on Critical Quality Attributes meeting their specification limits, lacking insight into the process robustness. Ppk is typically estimated after 15–30 commercial batches at which point it may be too late/too complex to make process adjustments to enhance robustness. The use of Bayesian statistics, prior knowledge, and input from Subject matter experts (SMEs) offers an opportunity to make predictions on process capability during the development cycle. Developing a standard methodology to assess long term process capability at various stages of development provides several benefits: provides opportunity for early insight into process vulnerabilities thereby enabling resolution pre‐licensure; identifies area of the process to prioritize and focus on during process development/process characterization (PC) using a data‐driven approach; and ultimately results in higher process robustness/process knowledge at launch. We propose a Bayesian‐based method to predict the performance of a manufacturing process at full manufacturing scale during the development and commercialization phase, before commercial data exists. Under Bayesian framework, limited development data for the process of interest at hand, data from similar products, general SME knowledge, and literature can be carefully formulated into informative priors. The implementation of the proposed approach is presented through two examples. To allow for continuous improvement during process development, we recommend to embed this approach of using predictive Ppk at pre‐defined commercialization stage‐gates, for example, at completion of process development, prior to and completion of PC, prior to technology transfer runs (Engineering/Process Performance Qualification, PPQ), and prior to commercial specification setting.
在制药行业,尤其是生物制剂和疫苗制造行业,对快速工艺开发的重视可能会导致工艺开发不充分,这往往会导致上市后的商业制造工艺不够稳健。工艺性能指数(Ppk)是对工艺在一段时间内按照规格限制生产产出的能力进行的统计测量。在生物制药生产中,工艺开发的进展基于关键质量属性是否满足其规格限制,而缺乏对工艺稳健性的深入了解。Ppk 通常在 15-30 个商业批次后进行估算,此时再进行工艺调整以提高稳健性可能为时已晚/过于复杂。贝叶斯统计法、先验知识和主题专家 (SME) 的意见为在开发周期内预测工艺能力提供了机会。开发一种标准方法来评估不同开发阶段的长期工艺能力有以下几个好处:提供早期洞察工艺漏洞的机会,从而能够在认证前解决问题;使用数据驱动方法确定工艺开发/工艺特征描述 (PC) 期间需要优先考虑和重点关注的工艺领域;以及最终在投产时获得更高的工艺稳健性/工艺知识。我们提出了一种基于贝叶斯的方法,用于在商业数据存在之前,在开发和商业化阶段预测制造工艺在全制造规模下的性能。在贝叶斯框架下,手头相关工艺的有限开发数据、类似产品的数据、中小企业的一般知识以及文献资料都可以被精心编制成信息丰富的前置条件。本文通过两个例子介绍了所建议方法的实施。为了在工艺开发过程中实现持续改进,我们建议在预先确定的商业化阶段,例如在工艺开发完成时、PC 完成之前、技术转让运行(工程/工艺性能鉴定,PPQ)之前以及商业规格制定之前,采用这种使用预测 Ppk 的方法。
{"title":"Predictive Ppk calculations for biologics and vaccines using a Bayesian approach – a tutorial","authors":"Jos Weusten, Jianfang Hu","doi":"10.1002/pst.2380","DOIUrl":"https://doi.org/10.1002/pst.2380","url":null,"abstract":"In pharmaceutical manufacturing, especially biologics and vaccines manufacturing, emphasis on speedy process development can lead to inadequate process development, which often results in less robust commercial manufacturing process after launch. Process performance index (Ppk) is a statistical measurement of the ability of a <jats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://en.wikipedia.org/wiki/Process_(engineering)\">process</jats:ext-link> to produce output within <jats:ext-link xmlns:xlink=\"http://www.w3.org/1999/xlink\" xlink:href=\"https://en.wikipedia.org/wiki/Specification_(technical_standard)\">specification</jats:ext-link> limits over a period of time. In biopharmaceutical manufacturing, progression in process development is based on Critical Quality Attributes meeting their specification limits, lacking insight into the process robustness. Ppk is typically estimated after 15–30 commercial batches at which point it may be too late/too complex to make process adjustments to enhance robustness. The use of Bayesian statistics, prior knowledge, and input from Subject matter experts (SMEs) offers an opportunity to make predictions on process capability during the development cycle. Developing a standard methodology to assess long term process capability at various stages of development provides several benefits: provides opportunity for early insight into process vulnerabilities thereby enabling resolution pre‐licensure; identifies area of the process to prioritize and focus on during process development/process characterization (PC) using a data‐driven approach; and ultimately results in higher process robustness/process knowledge at launch. We propose a Bayesian‐based method to predict the performance of a manufacturing process at full manufacturing scale during the development and commercialization phase, before commercial data exists. Under Bayesian framework, limited development data for the process of interest at hand, data from similar products, general SME knowledge, and literature can be carefully formulated into informative priors. The implementation of the proposed approach is presented through two examples. To allow for continuous improvement during process development, we recommend to embed this approach of using predictive Ppk at pre‐defined commercialization stage‐gates, for example, at completion of process development, prior to and completion of PC, prior to technology transfer runs (Engineering/Process Performance Qualification, PPQ), and prior to commercial specification setting.","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140562934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamic borrowing of historical controls adjusting for covariates in vaccine efficacy clinical trials 在疫苗疗效临床试验中动态借用历史对照组调整协变量
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-09 DOI: 10.1002/pst.2384
Andrea Callegaro, Yongyi Luo, Naveen Karkada, Toufik Zahaf
Traditional vaccine efficacy trials usually use fixed designs and often require large sample sizes. Recruiting a large number of subjects can make the trial expensive, long, and difficult to conduct. A possible approach to reduce the sample size and speed up the development is to use historical controls. In this paper, we extend the robust mixture prior (RMP) approach (a well established approach for Bayesian dynamic borrowing of historical controls) to adjust for covariates. The adjustment is done using classical methods from causal inference: inverse probability of treatment weighting, G‐computation and double‐robust estimation. We evaluate these covariate‐adjusted RMP approaches using a comprehensive simulation study and demonstrate their use by performing a retrospective analysis of a prophylactic human papillomavirus vaccine efficacy trial. Adjusting for covariates reduces the drift between current and historical controls, with a beneficial effect on bias, control of type I error and power.
传统的疫苗疗效试验通常采用固定设计,通常需要大量样本。招募大量受试者会使试验变得昂贵、漫长且难以进行。减少样本量并加快研发速度的一种可行方法是使用历史对照。在本文中,我们扩展了稳健混合先验(RMP)方法(一种成熟的贝叶斯动态借用历史对照的方法),以调整协变量。调整使用的是因果推断的经典方法:逆概率处理加权、G 计算和双稳健估计。我们通过一项综合模拟研究对这些协变量调整后的 RMP 方法进行了评估,并通过对预防性人类乳头瘤病毒疫苗疗效试验进行回顾性分析来展示这些方法的应用。对协变量的调整减少了当前对照和历史对照之间的漂移,对偏差、I 型误差控制和功率都有好处。
{"title":"Dynamic borrowing of historical controls adjusting for covariates in vaccine efficacy clinical trials","authors":"Andrea Callegaro, Yongyi Luo, Naveen Karkada, Toufik Zahaf","doi":"10.1002/pst.2384","DOIUrl":"https://doi.org/10.1002/pst.2384","url":null,"abstract":"Traditional vaccine efficacy trials usually use fixed designs and often require large sample sizes. Recruiting a large number of subjects can make the trial expensive, long, and difficult to conduct. A possible approach to reduce the sample size and speed up the development is to use historical controls. In this paper, we extend the robust mixture prior (RMP) approach (a well established approach for Bayesian dynamic borrowing of historical controls) to adjust for covariates. The adjustment is done using classical methods from causal inference: inverse probability of treatment weighting, G‐computation and double‐robust estimation. We evaluate these covariate‐adjusted RMP approaches using a comprehensive simulation study and demonstrate their use by performing a retrospective analysis of a prophylactic human papillomavirus vaccine efficacy trial. Adjusting for covariates reduces the drift between current and historical controls, with a beneficial effect on bias, control of type I error and power.","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140562907","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Information‐based group sequential design for post‐market safety monitoring of medical products using real world data 利用真实世界的数据,为医疗产品上市后安全监测进行基于信息的分组顺序设计
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-08 DOI: 10.1002/pst.2385
Zhiwei Zhang, Carrie Nielson, Ching‐Yi Chuo, Zhishen Ye
Real world healthcare data are commonly used in post‐market safety monitoring studies to address potential safety issues related to newly approved medical products. Such studies typically involve repeated evaluations of accumulating safety data with respect to pre‐defined hypotheses, for which the group sequential design provides a rigorous and flexible statistical framework. A major challenge in designing a group sequential safety monitoring study is the uncertainty associated with product uptake, which makes it difficult to specify the final sample size or maximum duration of the study. To deal with this challenge, we propose an information‐based group sequential design which specifies a target amount of information that would produce adequate power for detecting a clinically significant effect size. At each interim analysis, the variance estimate for the treatment effect of interest is used to compute the current information time, and a pre‐specified alpha spending function is used to determine the stopping boundary. The proposed design can be applied to regression models that adjust for potential confounders and/or heterogeneous treatment exposure. Simulation results demonstrate that the proposed design performs reasonably well in realistic settings
真实世界的医疗保健数据通常用于上市后安全监测研究,以解决与新批准的医疗产品相关的潜在安全问题。此类研究通常涉及根据预先确定的假设对不断积累的安全性数据进行重复评估,而分组序列设计则为此类研究提供了严格而灵活的统计框架。设计分组序列安全性监测研究的一个主要挑战是与产品吸收相关的不确定性,这使得最终样本量或研究的最长持续时间难以确定。为了应对这一挑战,我们提出了一种基于信息的分组序列设计,该设计规定了一个目标信息量,该信息量将产生足够的功率来检测具有临床意义的效应大小。在每次中期分析中,相关治疗效果的方差估计值用于计算当前的信息时间,而预先指定的阿尔法支出函数用于确定停止边界。建议的设计可用于调整潜在混杂因素和/或异质性治疗暴露的回归模型。模拟结果表明,所提出的设计在现实环境中表现相当出色
{"title":"Information‐based group sequential design for post‐market safety monitoring of medical products using real world data","authors":"Zhiwei Zhang, Carrie Nielson, Ching‐Yi Chuo, Zhishen Ye","doi":"10.1002/pst.2385","DOIUrl":"https://doi.org/10.1002/pst.2385","url":null,"abstract":"Real world healthcare data are commonly used in post‐market safety monitoring studies to address potential safety issues related to newly approved medical products. Such studies typically involve repeated evaluations of accumulating safety data with respect to pre‐defined hypotheses, for which the group sequential design provides a rigorous and flexible statistical framework. A major challenge in designing a group sequential safety monitoring study is the uncertainty associated with product uptake, which makes it difficult to specify the final sample size or maximum duration of the study. To deal with this challenge, we propose an information‐based group sequential design which specifies a target amount of information that would produce adequate power for detecting a clinically significant effect size. At each interim analysis, the variance estimate for the treatment effect of interest is used to compute the current information time, and a pre‐specified alpha spending function is used to determine the stopping boundary. The proposed design can be applied to regression models that adjust for potential confounders and/or heterogeneous treatment exposure. Simulation results demonstrate that the proposed design performs reasonably well in realistic settings","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140563107","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Balance diagnostics in propensity score analysis following multiple imputation: A new method 多重归因后倾向得分分析中的平衡诊断:一种新方法
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-06 DOI: 10.1002/pst.2389
Sevinc Puren Yucel Karakaya, Ilker Unal
The combination of propensity score analysis and multiple imputation has been prominent in epidemiological research in recent years. However, studies on the evaluation of balance in this combination are limited. In this paper, we propose a new method for assessing balance in propensity score analysis following multiple imputation. A simulation study was conducted to evaluate the performance of balance assessment methods (Leyrat's, Leite's, and new method). Simulated scenarios varied regarding the presence of missing data in the control or treatment and control group, and the imputation model with/without outcome. Leyrat's method was more biased in all the studied scenarios. Leite's method and the combine method yielded balanced results with lower mean absolute difference, regardless of whether the outcome was included in the imputation model or not. Leyrat's method had a higher false positive ratio and Leite's and combine method had higher specificity and accuracy, especially when the outcome was not included in the imputation model. According to simulation results, most of time, Leyrat's method and Leite's method contradict with each other on appraising the balance. This discrepancy can be solved using new combine method.
近年来,倾向得分分析与多重估算的结合在流行病学研究中十分突出。然而,对这种组合的平衡性评估研究却很有限。在本文中,我们提出了一种在多重归因后评估倾向评分分析平衡性的新方法。我们进行了一项模拟研究,以评估平衡评估方法(Leyrat's、Leite's 和新方法)的性能。模拟情景因对照组或治疗组和对照组是否存在缺失数据以及有/无结果的估算模型而异。在所有研究场景中,Leyrat 方法的偏差更大。无论结果是否包含在估算模型中,莱特法和合并法的结果都比较均衡,平均绝对差值较低。Leyrat 方法的假阳性率较高,而 Leite 方法和组合方法的特异性和准确性较高,尤其是当结果未纳入估算模型时。根据模拟结果,在大多数情况下,Leyrat 方法和 Leite 方法在评估平衡方面相互矛盾。这种矛盾可以通过新的组合方法来解决。
{"title":"Balance diagnostics in propensity score analysis following multiple imputation: A new method","authors":"Sevinc Puren Yucel Karakaya, Ilker Unal","doi":"10.1002/pst.2389","DOIUrl":"https://doi.org/10.1002/pst.2389","url":null,"abstract":"The combination of propensity score analysis and multiple imputation has been prominent in epidemiological research in recent years. However, studies on the evaluation of balance in this combination are limited. In this paper, we propose a new method for assessing balance in propensity score analysis following multiple imputation. A simulation study was conducted to evaluate the performance of balance assessment methods (Leyrat's, Leite's, and new method). Simulated scenarios varied regarding the presence of missing data in the control or treatment and control group, and the imputation model with/without outcome. Leyrat's method was more biased in all the studied scenarios. Leite's method and the combine method yielded balanced results with lower mean absolute difference, regardless of whether the outcome was included in the imputation model or not. Leyrat's method had a higher false positive ratio and Leite's and combine method had higher specificity and accuracy, especially when the outcome was not included in the imputation model. According to simulation results, most of time, Leyrat's method and Leite's method contradict with each other on appraising the balance. This discrepancy can be solved using new combine method.","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140563007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A practical guide to the appropriate analysis of eGFR data over time: A simulation study 对随时间变化的 eGFR 数据进行适当分析的实用指南:模拟研究
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-03 DOI: 10.1002/pst.2381
Todd DeVries, Kevin J. Carroll, Sandra A. Lewis
In several therapeutic areas, including chronic kidney disease (CKD) and immunoglobulin A nephropathy (IgAN), there is a growing interest in how best to analyze estimated glomerular filtration rate (eGFR) data over time in randomized clinical trials including how to best accommodate situations where the rate of change is not anticipated to be linear over time, often due to possible short term hemodynamic effects of certain classes of interventions. In such situations, concerns have been expressed by regulatory authorities that the common application of single slope analysis models may induce Type I error inflation. This article aims to offer practical advice and guidance, including SAS codes, on the statistical methodology to be employed in an eGFR rate of change analysis and offers guidance on trial design considerations for eGFR endpoints. A two‐slope statistical model for eGFR data over time is proposed allowing for an analysis to simultaneously evaluate short term acute effects and long term chronic effects. A simulation study was conducted under a range of credible null and alternative hypotheses to evaluate the performance of the two‐slope model in comparison to commonly used single slope random coefficients models as well as to non‐slope based analyses of change from baseline or time normalized area under the curve (TAUC). Importantly, and contrary to preexisting concerns, these simulations demonstrate the absence of alpha inflation associated with the use of single or two‐slope random coefficient models, even when such models are misspecified, and highlight that any concern regarding model misspecification relates to power and not to lack of Type I error control.
在一些治疗领域,包括慢性肾脏病 (CKD) 和免疫球蛋白 A 肾病 (IgAN),人们越来越关注如何在随机临床试验中以最佳方式分析随时间变化的肾小球滤过率 (eGFR) 估计数据,包括如何以最佳方式适应随时间变化的速率不是线性的情况,这通常是由于某些类别的干预措施可能会产生短期血液动力学效应。在这种情况下,监管机构表示担心普遍应用单一斜率分析模型可能会引起 I 类错误膨胀。本文旨在就 eGFR 变化率分析中应采用的统计方法提供实用建议和指导(包括 SAS 代码),并就 eGFR 终点的试验设计注意事项提供指导。本文提出了一种随时间变化的 eGFR 数据双斜率统计模型,允许同时评估短期急性效应和长期慢性效应的分析。在一系列可信的零假设和替代假设下进行了模拟研究,以评估双斜率模型与常用的单斜率随机系数模型以及非斜率基线变化分析或时间归一化曲线下面积(TAUC)相比的性能。重要的是,与之前存在的担忧相反,这些模拟结果表明,使用单斜率或双斜率随机系数模型,即使这些模型被错误地指定,也不会出现α膨胀,并强调任何有关模型指定错误的担忧都与功率有关,而不是与缺乏I类错误控制有关。
{"title":"A practical guide to the appropriate analysis of eGFR data over time: A simulation study","authors":"Todd DeVries, Kevin J. Carroll, Sandra A. Lewis","doi":"10.1002/pst.2381","DOIUrl":"https://doi.org/10.1002/pst.2381","url":null,"abstract":"In several therapeutic areas, including chronic kidney disease (CKD) and immunoglobulin A nephropathy (IgAN), there is a growing interest in how best to analyze estimated glomerular filtration rate (eGFR) data over time in randomized clinical trials including how to best accommodate situations where the rate of change is not anticipated to be linear over time, often due to possible short term hemodynamic effects of certain classes of interventions. In such situations, concerns have been expressed by regulatory authorities that the common application of single slope analysis models may induce Type I error inflation. This article aims to offer practical advice and guidance, including SAS codes, on the statistical methodology to be employed in an eGFR rate of change analysis and offers guidance on trial design considerations for eGFR endpoints. A two‐slope statistical model for eGFR data over time is proposed allowing for an analysis to simultaneously evaluate short term acute effects and long term chronic effects. A simulation study was conducted under a range of credible null and alternative hypotheses to evaluate the performance of the two‐slope model in comparison to commonly used single slope random coefficients models as well as to non‐slope based analyses of change from baseline or time normalized area under the curve (TAUC). Importantly, and contrary to preexisting concerns, these simulations demonstrate the absence of alpha inflation associated with the use of single or two‐slope random coefficient models, even when such models are misspecified, and highlight that any concern regarding model misspecification relates to power and not to lack of Type I error control.","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140563098","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synergy detection: A practical guide to statistical assessment of potential drug combinations. 协同作用检测:潜在药物组合统计评估实用指南》。
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-04-02 DOI: 10.1002/pst.2383
Elli Makariadou, Xuechen Wang, Nicholas Hein, Negera W Deresa, Kathy Mutambanengwe, Bie Verbist, Olivier Thas

Combination treatments have been of increasing importance in drug development across therapeutic areas to improve treatment response, minimize the development of resistance, and/or minimize adverse events. Pre-clinical in-vitro combination experiments aim to explore the potential of such drug combinations during drug discovery by comparing the observed effect of the combination with the expected treatment effect under the assumption of no interaction (i.e., null model). This tutorial will address important design aspects of such experiments to allow proper statistical evaluation. Additionally, it will highlight the Biochemically Intuitive Generalized Loewe methodology (BIGL R package available on CRAN) to statistically detect deviations from the expectation under different null models. A clear advantage of the methodology is the quantification of the effect sizes, together with confidence interval while controlling the directional false coverage rate. Finally, a case study will showcase the workflow in analyzing combination experiments.

在各治疗领域的药物研发中,联合疗法的重要性与日俱增,它可以改善治疗反应,最大限度地减少耐药性的产生,和/或最大限度地减少不良反应。临床前体外联合实验旨在通过比较联合治疗的观察效果和无相互作用假设(即无效模型)下的预期治疗效果,在药物研发过程中探索此类药物联合治疗的潜力。本教程将讨论此类实验的重要设计方面,以便进行适当的统计评估。此外,它还将重点介绍生化直观广义卢韦法(BIGL R 软件包,可在 CRAN 上下载),用于统计检测不同无效模型下的预期偏差。该方法的一个明显优势是可以量化效应大小和置信区间,同时控制方向性错误覆盖率。最后,一个案例研究将展示分析组合实验的工作流程。
{"title":"Synergy detection: A practical guide to statistical assessment of potential drug combinations.","authors":"Elli Makariadou, Xuechen Wang, Nicholas Hein, Negera W Deresa, Kathy Mutambanengwe, Bie Verbist, Olivier Thas","doi":"10.1002/pst.2383","DOIUrl":"https://doi.org/10.1002/pst.2383","url":null,"abstract":"<p><p>Combination treatments have been of increasing importance in drug development across therapeutic areas to improve treatment response, minimize the development of resistance, and/or minimize adverse events. Pre-clinical in-vitro combination experiments aim to explore the potential of such drug combinations during drug discovery by comparing the observed effect of the combination with the expected treatment effect under the assumption of no interaction (i.e., null model). This tutorial will address important design aspects of such experiments to allow proper statistical evaluation. Additionally, it will highlight the Biochemically Intuitive Generalized Loewe methodology (BIGL R package available on CRAN) to statistically detect deviations from the expectation under different null models. A clear advantage of the methodology is the quantification of the effect sizes, together with confidence interval while controlling the directional false coverage rate. Finally, a case study will showcase the workflow in analyzing combination experiments.</p>","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140336499","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Time-to-event estimands and loss to follow-up in oncology in light of the estimands guidance. 根据估算指导,肿瘤学中的时间-事件估算值和随访损失。
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-03-29 DOI: 10.1002/pst.2386
Jonathan M Siegel, Hans-Jochen Weber, Stefan Englert, Feng Liu, Michelle Casey

Time-to-event estimands are central to many oncology clinical trials. The estimands framework (addendum to the ICH E9 guideline) calls for precisely defining the treatment effect of interest to align with the clinical question of interest and requires predefining the handling of intercurrent events (ICEs) that occur after treatment initiation and "affect either the interpretation or the existence of the measurements associated with the clinical question of interest." We discuss a practical problem in clinical trial design and execution, that is, in some clinical contexts it is not feasible to systematically follow patients to an event of interest. Loss to follow-up in the presence of intercurrent events can affect the meaning and interpretation of the study results. We provide recommendations for trial design, stressing the need for close alignment of the clinical question of interest and study design, impact on data collection, and other practical implications. When patients cannot be systematically followed, compromise may be necessary to select the best available estimand that can be feasibly estimated under the circumstances. We discuss the use of sensitivity and supplementary analyses to examine assumptions of interest.

时间到事件估计因素是许多肿瘤临床试验的核心。估计指标框架(ICH E9 指南增编)要求精确定义感兴趣的治疗效果,使其与感兴趣的临床问题相一致,并要求预先确定如何处理治疗开始后发生的并 "影响与感兴趣的临床问题相关的测量结果的解释或存在 "的并发症(ICEs)。我们讨论了临床试验设计和执行中的一个实际问题,即在某些临床情况下,不可能对患者进行系统的随访,直至发生相关事件。在出现并发症的情况下,失去随访机会会影响研究结果的意义和解释。我们为试验设计提供了建议,强调需要将感兴趣的临床问题与研究设计、对数据收集的影响以及其他实际影响紧密结合起来。当无法对患者进行系统的随访时,可能需要做出妥协,选择在当时情况下可行的最佳估计值。我们将讨论使用敏感性分析和补充分析来检查相关假设。
{"title":"Time-to-event estimands and loss to follow-up in oncology in light of the estimands guidance.","authors":"Jonathan M Siegel, Hans-Jochen Weber, Stefan Englert, Feng Liu, Michelle Casey","doi":"10.1002/pst.2386","DOIUrl":"https://doi.org/10.1002/pst.2386","url":null,"abstract":"<p><p>Time-to-event estimands are central to many oncology clinical trials. The estimands framework (addendum to the ICH E9 guideline) calls for precisely defining the treatment effect of interest to align with the clinical question of interest and requires predefining the handling of intercurrent events (ICEs) that occur after treatment initiation and \"affect either the interpretation or the existence of the measurements associated with the clinical question of interest.\" We discuss a practical problem in clinical trial design and execution, that is, in some clinical contexts it is not feasible to systematically follow patients to an event of interest. Loss to follow-up in the presence of intercurrent events can affect the meaning and interpretation of the study results. We provide recommendations for trial design, stressing the need for close alignment of the clinical question of interest and study design, impact on data collection, and other practical implications. When patients cannot be systematically followed, compromise may be necessary to select the best available estimand that can be feasibly estimated under the circumstances. We discuss the use of sensitivity and supplementary analyses to examine assumptions of interest.</p>","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140326928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of sceptical priors on the performance of adaptive clinical trials with binary outcomes. 怀疑先验对二元结果适应性临床试验绩效的影响。
IF 1.5 4区 医学 Q2 Mathematics Pub Date : 2024-03-29 DOI: 10.1002/pst.2387
Anders Granholm, Theis Lange, Michael O Harhay, Anders Perner, Morten Hylander Møller, Benjamin Skov Kaas-Hansen

It is unclear how sceptical priors impact adaptive trials. We assessed the influence of priors expressing a spectrum of scepticism on the performance of several Bayesian, multi-stage, adaptive clinical trial designs using binary outcomes under different clinical scenarios. Simulations were conducted using fixed stopping rules and stopping rules calibrated to keep type 1 error rates at approximately 5%. We assessed total sample sizes, event rates, event counts, probabilities of conclusiveness and selecting the best arm, root mean squared errors (RMSEs) of the estimated treatment effect in the selected arms, and ideal design percentages (IDPs; which combines arm selection probabilities, power, and consequences of selecting inferior arms), with RMSEs and IDPs estimated in conclusive trials only and after selecting the control arm in inconclusive trials. Using fixed stopping rules, increasingly sceptical priors led to larger sample sizes, more events, higher IDPs in simulations ending in superiority, and lower RMSEs, lower probabilities of conclusiveness/selecting the best arm, and lower IDPs when selecting controls in inconclusive simulations. With calibrated stopping rules, the effects of increased scepticism on sample sizes and event counts were attenuated, and increased scepticism increased the probabilities of conclusiveness/selecting the best arm and IDPs when selecting controls in inconclusive simulations without substantially increasing sample sizes. Results from trial designs with gentle adaptation and non-informative priors resembled those from designs with more aggressive adaptation using weakly-to-moderately sceptical priors. In conclusion, the use of somewhat sceptical priors in adaptive trial designs with binary outcomes seems reasonable when considering multiple performance metrics simultaneously.

目前还不清楚怀疑先验如何影响适应性试验。我们评估了表达各种怀疑态度的先验对几种贝叶斯、多阶段、适应性临床试验设计在不同临床情况下使用二元结果的性能的影响。我们使用固定停止规则和校准停止规则进行了模拟,以将类型1错误率保持在5%左右。我们评估了总样本量、事件发生率、事件计数、确证概率和选择最佳臂的概率、所选臂中估计治疗效果的均方根误差(RMSE)以及理想设计百分比(IDPs;结合了臂选择概率、功率和选择劣质臂的后果),仅在确证试验中估算了RMSEs和IDPs,在未确证试验中则在选择对照臂后估算了RMSEs和IDPs。使用固定的停止规则时,先验的怀疑程度越高,样本量越大、事件越多、模拟结果为优时的IDP越高,而在模拟结果为不确定时,RMSE越低、确定性/选择最佳臂的概率越低、选择对照臂的IDP越低。通过校准停止规则,怀疑度提高对样本量和事件计数的影响减弱了,怀疑度提高增加了得出结论/选择最佳臂的概率,以及在无结果模拟中选择对照组时的IDP,而不会大幅增加样本量。采用温和适应和非信息性先验的试验设计的结果与采用弱到中度怀疑先验的更激进适应设计的结果相似。总之,在同时考虑多个性能指标时,在二元结果的自适应试验设计中使用略带怀疑的先验似乎是合理的。
{"title":"Effects of sceptical priors on the performance of adaptive clinical trials with binary outcomes.","authors":"Anders Granholm, Theis Lange, Michael O Harhay, Anders Perner, Morten Hylander Møller, Benjamin Skov Kaas-Hansen","doi":"10.1002/pst.2387","DOIUrl":"10.1002/pst.2387","url":null,"abstract":"<p><p>It is unclear how sceptical priors impact adaptive trials. We assessed the influence of priors expressing a spectrum of scepticism on the performance of several Bayesian, multi-stage, adaptive clinical trial designs using binary outcomes under different clinical scenarios. Simulations were conducted using fixed stopping rules and stopping rules calibrated to keep type 1 error rates at approximately 5%. We assessed total sample sizes, event rates, event counts, probabilities of conclusiveness and selecting the best arm, root mean squared errors (RMSEs) of the estimated treatment effect in the selected arms, and ideal design percentages (IDPs; which combines arm selection probabilities, power, and consequences of selecting inferior arms), with RMSEs and IDPs estimated in conclusive trials only and after selecting the control arm in inconclusive trials. Using fixed stopping rules, increasingly sceptical priors led to larger sample sizes, more events, higher IDPs in simulations ending in superiority, and lower RMSEs, lower probabilities of conclusiveness/selecting the best arm, and lower IDPs when selecting controls in inconclusive simulations. With calibrated stopping rules, the effects of increased scepticism on sample sizes and event counts were attenuated, and increased scepticism increased the probabilities of conclusiveness/selecting the best arm and IDPs when selecting controls in inconclusive simulations without substantially increasing sample sizes. Results from trial designs with gentle adaptation and non-informative priors resembled those from designs with more aggressive adaptation using weakly-to-moderately sceptical priors. In conclusion, the use of somewhat sceptical priors in adaptive trial designs with binary outcomes seems reasonable when considering multiple performance metrics simultaneously.</p>","PeriodicalId":19934,"journal":{"name":"Pharmaceutical Statistics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140326927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Pharmaceutical Statistics
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1