Pub Date : 2020-12-01Epub Date: 2020-01-21DOI: 10.3767/persoonia.2020.45.04
W Wang, G Q Li, Q L Liu, S F Chen
Plantation-grown Eucalyptus (Myrtaceae) and other trees residing in the Myrtales have been widely planted in southern China. These fungal pathogens include species of Cryphonectriaceae that are well-known to cause stem and branch canker disease on Myrtales trees. During recent disease surveys in southern China, sporocarps with typical characteristics of Cryphonectriaceae were observed on the surfaces of cankers on the stems and branches of Myrtales trees. In this study, a total of 164 Cryphonectriaceae isolates were identified based on comparisons of DNA sequences of the partial conserved nuclear large subunit (LSU) ribosomal DNA, internal transcribed spacer (ITS) regions including the 5.8S gene of the ribosomal DNA operon, two regions of the β-tubulin (tub2/tub1) gene, and the translation elongation factor 1-alpha (tef1) gene region, as well as their morphological characteristics. The results showed that eight species reside in four genera of Cryphonectriaceae occurring on the genera Eucalyptus, Melastoma (Melastomataceae), Psidium (Myrtaceae), Syzygium (Myrtaceae), and Terminalia (Combretaceae) in Myrtales. These fungal species include Chrysoporthe deuterocubensis, Celoporthe syzygii, Cel. eucalypti, Cel. guangdongensis, Cel. cerciana, a new genus and two new species, as well as one new species of Aurifilum. These new taxa are hereby described as Parvosmorbus gen. nov., Par. eucalypti sp. nov., Par. guangdongensis sp. nov., and Aurifilum terminali sp. nov. Pathogenicity tests showed that the eight species of Cryphonectriaceae are pathogenic to two Eucalyptus hybrid seedlings, Melastoma sanguineum branches, and Psidium guajava and Syzygium jambos seedlings. The overall data showed that Chr. deuterocubensis is the most aggressive, followed by Par. eucalypti. Significant differences in tolerance were observed between the two tested Eucalyptus hybrid genotypes, suggesting that disease-tolerant genotypes can be selected for disease management in the Eucalyptus industry.
{"title":"<i>Cryphonectriaceae</i> on <i>Myrtales</i> in China: phylogeny, host range, and pathogenicity.","authors":"W Wang, G Q Li, Q L Liu, S F Chen","doi":"10.3767/persoonia.2020.45.04","DOIUrl":"https://doi.org/10.3767/persoonia.2020.45.04","url":null,"abstract":"<p><p>Plantation-grown <i>Eucalyptus</i> (<i>Myrtaceae</i>) and other trees residing in the <i>Myrtales</i> have been widely planted in southern China. These fungal pathogens include species of <i>Cryphonectriaceae</i> that are well-known to cause stem and branch canker disease on <i>Myrtales</i> trees. During recent disease surveys in southern China, sporocarps with typical characteristics of <i>Cryphonectriaceae</i> were observed on the surfaces of cankers on the stems and branches of <i>Myrtales</i> trees. In this study, a total of 164 <i>Cryphonectriaceae</i> isolates were identified based on comparisons of DNA sequences of the partial conserved nuclear large subunit (LSU) ribosomal DNA, internal transcribed spacer (ITS) regions including the 5.8S gene of the ribosomal DNA operon, two regions of the β-tubulin (<i>tub2</i>/<i>tub1</i>) gene, and the translation elongation factor 1-alpha (<i>tef1</i>) gene region, as well as their morphological characteristics. The results showed that eight species reside in four genera of <i>Cryphonectriaceae</i> occurring on the genera <i>Eucalyptus</i>, <i>Melastoma</i> (<i>Melastomataceae</i>), <i>Psidium</i> (<i>Myrtaceae</i>), <i>Syzygium</i> (<i>Myrtaceae</i>), and <i>Terminalia</i> (<i>Combretaceae</i>) in <i>Myrtales</i>. These fungal species include <i>Chrysoporthe deuterocubensis</i>, <i>Celoporthe syzygii</i>, <i>Cel. eucalypti</i>, <i>Cel. guangdongensis</i>, <i>Cel. cerciana</i>, a new genus and two new species, as well as one new species of <i>Aurifilum</i>. These new taxa are hereby described as <i>Parvosmorbus</i> gen. nov., <i>Par. eucalypti</i> sp. nov., <i>Par. guangdongensis</i> sp. nov., and <i>Aurifilum terminali</i> sp. nov. Pathogenicity tests showed that the eight species of <i>Cryphonectriaceae</i> are pathogenic to two <i>Eucalyptus</i> hybrid seedlings, <i>Melastoma sanguineum</i> branches, and <i>Psidium guajava</i> and <i>Syzygium jambos</i> seedlings. The overall data showed that <i>Chr. deuterocubensis</i> is the most aggressive, followed by <i>Par. eucalypti</i>. Significant differences in tolerance were observed between the two tested <i>Eucalyptus</i> hybrid genotypes, suggesting that disease-tolerant genotypes can be selected for disease management in the <i>Eucalyptus</i> industry.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"45 ","pages":"101-131"},"PeriodicalIF":9.1,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/d9/b3/per-2020-45-4.PMC8375347.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39363976","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-12-01Epub Date: 2020-02-06DOI: 10.3767/persoonia.2020.45.05
Y S Guo, P W Crous, Q Bai, M Fu, M M Yang, X H Wang, Y M Du, N Hong, W X Xu, G P Wang
Species of Diaporthe (syn. Phomopsis) are important endophytes, saprobes and pathogens, infecting a wide range of plants and resulting in important crop diseases. However, the species occurring on pear remain largely unresolved. In this study, a total of 453 Diaporthe isolates were obtained from branches of Pyrus plants (including P. bretschneideri, P. communis, P. pyrifolia and P. ussuriensis collected from 12 provinces in China) showing shoot canker symptoms. Phylogenetic analyses based on five loci (ITS, TEF, CAL, HIS, and TUB) coupled with morphology of 113 representative isolates revealed that 19 Diaporthe species were isolated, representing 13 known species (including D. caryae, D. cercidis, D. citrichinensis, D. eres, D. fusicola, D. ganjae, D. hongkongensis, D. padina, D.pescicola, D. sojae, D. taoicola, D. unshiuensis and D. velutina) and six new species described here as D. acuta, D. chongqingensis, D. fulvicolor, D. parvae, D. spinosa and D. zaobaisu. Although Koch's postulates confirmed all species to be pathogenic, a high degree of variation in aggressiveness was observed. Moreover, these species have a high diversity, plasticity, and prevalence related to the geographical location and pear species involved.
{"title":"High diversity of <i>Diaporthe</i> species associated with pear shoot canker in China.","authors":"Y S Guo, P W Crous, Q Bai, M Fu, M M Yang, X H Wang, Y M Du, N Hong, W X Xu, G P Wang","doi":"10.3767/persoonia.2020.45.05","DOIUrl":"https://doi.org/10.3767/persoonia.2020.45.05","url":null,"abstract":"<p><p>Species of <i>Diaporthe</i> (syn. <i>Phomopsis</i>) are important endophytes, saprobes and pathogens, infecting a wide range of plants and resulting in important crop diseases. However, the species occurring on pear remain largely unresolved. In this study, a total of 453 <i>Diaporthe</i> isolates were obtained from branches of <i>Pyrus</i> plants (including <i>P. bretschneideri</i>, <i>P. communis</i>, <i>P. pyrifolia</i> and <i>P. ussuriensis</i> collected from 12 provinces in China) showing shoot canker symptoms. Phylogenetic analyses based on five loci (ITS, <i>TEF</i>, <i>CAL</i>, <i>HIS</i>, and <i>TUB</i>) coupled with morphology of 113 representative isolates revealed that 19 <i>Diaporthe</i> species were isolated, representing 13 known species (including <i>D. caryae</i>, <i>D. cercidis</i>, <i>D. citrichinensis</i>, <i>D. eres</i>, <i>D. fusicola</i>, <i>D. ganjae</i>, <i>D. hongkongensis</i>, <i>D. padina</i>, <i>D.</i> <i>pescicola</i>, <i>D. sojae</i>, <i>D. taoicola</i>, <i>D. unshiuensis</i> and <i>D. velutina</i>) and six new species described here as <i>D. acuta</i>, <i>D. chongqingensis</i>, <i>D. fulvicolor</i>, <i>D. parvae</i>, <i>D. spinosa</i> and <i>D. zaobaisu</i>. Although Koch's postulates confirmed all species to be pathogenic, a high degree of variation in aggressiveness was observed. Moreover, these species have a high diversity, plasticity, and prevalence related to the geographical location and pear species involved.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"45 ","pages":"132-162"},"PeriodicalIF":9.1,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/6d/55/per-2020-45-5.PMC8375346.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39363390","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2020-05-04DOI: 10.3767/persoonia.2020.44.08
Y-F Sun, D H Costa-Rezende, J-H Xing, J-L Zhou, B Zhang, T B Gibertoni, G Gates, M Glen, Y-C Dai, B-K Cui
Amauroderma s.lat. has been defined mainly by the morphological features of non-truncate and double-walled basidiospores with a distinctly ornamented endospore wall. In this work, taxonomic and phylogenetic studies on species of Amauroderma s.lat. are carried out by morphological examination together with ultrastructural observations, and molecular phylogenetic analyses of multiple loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II (RPB1) and the second largest subunit of RNA polymerase II (RPB2), the translation elongation factor 1-α gene (TEF) and the β-tubulin gene (TUB). The results demonstrate that species of Ganodermataceae formed ten clades. Species previously placed in Amauroderma s.lat. are divided into four clades: Amauroderma s.str., Foraminispora, Furtadoa and a new genus Sanguinoderma. The classification of Amauroderma s.lat. is thus revised, six new species are described and illustrated, and eight new combinations are proposed. SEM micrographs of basidiospores of Foraminispora and Sanguinoderma are provided, and the importance of SEM in delimitation of taxa in this study is briefly discussed. Keys to species of Amauroderma s.str., Foraminispora, Furtadoa, and Sanguinoderma are also provided.
{"title":"Multi-gene phylogeny and taxonomy of <i>Amauroderma</i> s.lat. (<i>Ganodermataceae</i>).","authors":"Y-F Sun, D H Costa-Rezende, J-H Xing, J-L Zhou, B Zhang, T B Gibertoni, G Gates, M Glen, Y-C Dai, B-K Cui","doi":"10.3767/persoonia.2020.44.08","DOIUrl":"https://doi.org/10.3767/persoonia.2020.44.08","url":null,"abstract":"<p><p><i>Amauroderma</i> s.lat. has been defined mainly by the morphological features of non-truncate and double-walled basidiospores with a distinctly ornamented endospore wall. In this work, taxonomic and phylogenetic studies on species of <i>Amauroderma</i> s.lat. are carried out by morphological examination together with ultrastructural observations, and molecular phylogenetic analyses of multiple loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II (<i>RPB1</i>) and the second largest subunit of RNA polymerase II (<i>RPB2</i>), the translation elongation factor 1-α gene (<i>TEF</i>) and the β-tubulin gene (<i>TUB</i>). The results demonstrate that species of <i>Ganodermataceae</i> formed ten clades. Species previously placed in <i>Amauroderma</i> s.lat. are divided into four clades: <i>Amauroderma</i> s.str., <i>Foraminispora</i>, <i>Furtadoa</i> and a new genus <i>Sanguinoderma</i>. The classification of <i>Amauroderma</i> s.lat. is thus revised, six new species are described and illustrated, and eight new combinations are proposed. SEM micrographs of basidiospores of <i>Foraminispora</i> and <i>Sanguinoderma</i> are provided, and the importance of SEM in delimitation of taxa in this study is briefly discussed. Keys to species of <i>Amauroderma</i> s.str., <i>Foraminispora</i>, <i>Furtadoa</i>, and <i>Sanguinoderma</i> are also provided.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"206-239"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3767/persoonia.2020.44.08","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38538557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2020-06-29DOI: 10.3767/persoonia.2020.44.11
P W Crous, M J Wingfield, Y-H Chooi, C L M Gilchrist, E Lacey, J I Pitt, F Roets, W J Swart, J F Cano-Lira, N Valenzuela-Lopez, V Hubka, R G Shivas, A M Stchigel, D G Holdom, Ž Jurjević, A V Kachalkin, T Lebel, C Lock, M P Martín, Y P Tan, M A Tomashevskaya, J S Vitelli, I G Baseia, V K Bhatt, T E Brandrud, J T De Souza, B Dima, H J Lacey, L Lombard, P R Johnston, A Morte, V Papp, A Rodríguez, E Rodríguez-Andrade, K C Semwal, L Tegart, Z G Abad, A Akulov, P Alvarado, A Alves, J P Andrade, F Arenas, C Asenjo, J Ballarà, M D Barrett, L M Berná, A Berraf-Tebbal, M V Bianchinotti, K Bransgrove, T I Burgess, F S Carmo, R Chávez, A Čmoková, J D W Dearnaley, A L C M de A Santiago, J F Freitas-Neto, S Denman, B Douglas, F Dovana, A Eichmeier, F Esteve-Raventós, A Farid, A G Fedosova, G Ferisin, R J Ferreira, A Ferrer, C N Figueiredo, Y F Figueiredo, C G Reinoso-Fuentealba, I Garrido-Benavent, C F Cañete-Gibas, C Gil-Durán, A M Glushakova, M F M Gonçalves, M González, M Gorczak, C Gorton, F E Guard, A L Guarnizo, J Guarro, M Gutiérrez, P Hamal, L T Hien, A D Hocking, J Houbraken, G C Hunter, C A Inácio, M Jourdan, V I Kapitonov, L Kelly, T N Khanh, K Kisło, L Kiss, A Kiyashko, M Kolařík, J Kruse, A Kubátová, V Kučera, I Kučerová, I Kušan, H B Lee, G Levicán, A Lewis, N V Liem, K Liimatainen, H J Lim, M N Lyons, J G Maciá-Vicente, V Magaña-Dueñas, R Mahiques, E F Malysheva, P A S Marbach, P Marinho, N Matočec, A R McTaggart, A Mešić, L Morin, J M Muñoz-Mohedano, A Navarro-Ródenas, C P Nicolli, R L Oliveira, E Otsing, C L Ovrebo, T A Pankratov, A Paños, A Paz-Conde, A Pérez-Sierra, C Phosri, Á Pintos, A Pošta, S Prencipe, E Rubio, A Saitta, L S Sales, L Sanhueza, L A Shuttleworth, J Smith, M E Smith, D Spadaro, M Spetik, M Sochor, Z Sochorová, J O Sousa, N Suwannasai, L Tedersoo, H M Thanh, L D Thao, Z Tkalčec, N Vaghefi, A S Venzhik, A Verbeken, A Vizzini, S Voyron, M Wainhouse, A J S Whalley, M Wrzosek, M Zapata, I Zeil-Rolfe, J Z Groenewald
<p><p>Novel species of fungi described in this study include those from various countries as follows: <b>Antarctica</b>, <i>Cladosporium arenosum</i> from marine sediment sand. <b>Argentina</b>, <i>Kosmimatamyces alatophylus</i> (incl. <i>Kosmimatamyces</i> gen. nov.) from soil. <b>Australia</b>, <i>Aspergillus banksianus</i>, <i>Aspergillus kumbius</i>, <i>Aspergillus luteorubrus</i>, <i>Aspergillus malvicolor</i> and <i>Aspergillus nanangensis</i> from soil, <i>Erysiphe medicaginis</i> from leaves of <i>Medicago polymorpha</i>, <i>Hymenotorrendiella communis</i> on leaf litter of <i>Eucalyptus bicostata</i>, <i>Lactifluus albopicri</i> and <i>Lactifluus austropiperatus</i> on soil, <i>Macalpinomyces collinsiae</i> on <i>Eriachne benthamii</i>, <i>Marasmius vagus</i> on soil, <i>Microdochium dawsoniorum</i> from leaves of <i>Sporobolus natalensis</i>, <i>Neopestalotiopsis nebuloides</i> from leaves of <i>Sporobolus elongatus</i>, <i>Pestalotiopsis etonensis</i> from leaves of <i>Sporobolus jacquemontii</i>, <i>Phytophthora personensis</i> from soil associated with dying <i>Grevillea mccutcheonii.</i> <b>Brazil</b>, <i>Aspergillus oxumiae</i> from soil, <i>Calvatia baixaverdensis</i> on soil, <i>Geastrum calycicoriaceum</i> on leaf litter, <i>Greeneria kielmeyerae</i> on leaf spots of <i>Kielmeyera coriacea</i>. <b>Chile</b>, <i>Phytophthora aysenensis</i> on collar rot and stem of <i>Aristotelia chilensis.</i> <b>Croatia</b>, <i>Mollisia gibbospora</i> on fallen branch of <i>Fagus sylvatica.</i> <b>Czech Republic</b>, <i>Neosetophoma hnaniceana</i> from <i>Buxus sempervirens.</i> <b>Ecuador</b>, <i>Exophiala frigidotolerans</i> from soil. <b>Estonia</b>, <i>Elaphomyces bucholtzii</i> in soil. <b>France</b>, <i>Venturia paralias</i> from leaves of <i>Euphorbia paralias.</i> <b>India</b>, <i>Cortinarius balteatoindicus</i> and <i>Cortinarius ulkhagarhiensis</i> on leaf litter. <b>Indonesia</b>, <i>Hymenotorrendiella indonesiana</i> on <i>Eucalyptus urophylla</i> leaf litter. <b>Italy</b>, <i>Penicillium taurinense</i> from indoor chestnut mill. <b>Malaysia</b>, <i>Hemileucoglossum kelabitense</i> on soil, <i>Satchmopsis pini</i> on dead needles of <i>Pinus tecunumanii.</i> <b>Poland</b>, <i>Lecanicillium praecognitum</i> on insects' frass. <b>Portugal</b>, <i>Neodevriesia aestuarina</i> from saline water. <b>Republic of Korea</b>, <i>Gongronella namwonensis</i> from freshwater. <b>Russia</b>, <i>Candida pellucida</i> from <i>Exomias pellucidus</i>, <i>Heterocephalacria septentrionalis</i> as endophyte from <i>Cladonia rangiferina</i>, <i>Vishniacozyma phoenicis</i> from dates fruit, <i>Volvariella paludosa</i> from swamp. <b>Slovenia</b>, <i>Mallocybe crassivelata</i> on soil. <b>South Africa</b>, <i>Beltraniella podocarpi</i>, <i>Hamatocanthoscypha podocarpi</i>, <i>Coleophoma podocarpi</i> and <i>Nothoseiridium podocarpi</i> (incl. <i>Nothoseiridium</i> gen. nov.) from leaves of <i>Podocarpus latifolius</i>, <i>Gyrothrix encephalarti</i> from le
{"title":"Fungal Planet description sheets: 1042-1111.","authors":"P W Crous, M J Wingfield, Y-H Chooi, C L M Gilchrist, E Lacey, J I Pitt, F Roets, W J Swart, J F Cano-Lira, N Valenzuela-Lopez, V Hubka, R G Shivas, A M Stchigel, D G Holdom, Ž Jurjević, A V Kachalkin, T Lebel, C Lock, M P Martín, Y P Tan, M A Tomashevskaya, J S Vitelli, I G Baseia, V K Bhatt, T E Brandrud, J T De Souza, B Dima, H J Lacey, L Lombard, P R Johnston, A Morte, V Papp, A Rodríguez, E Rodríguez-Andrade, K C Semwal, L Tegart, Z G Abad, A Akulov, P Alvarado, A Alves, J P Andrade, F Arenas, C Asenjo, J Ballarà, M D Barrett, L M Berná, A Berraf-Tebbal, M V Bianchinotti, K Bransgrove, T I Burgess, F S Carmo, R Chávez, A Čmoková, J D W Dearnaley, A L C M de A Santiago, J F Freitas-Neto, S Denman, B Douglas, F Dovana, A Eichmeier, F Esteve-Raventós, A Farid, A G Fedosova, G Ferisin, R J Ferreira, A Ferrer, C N Figueiredo, Y F Figueiredo, C G Reinoso-Fuentealba, I Garrido-Benavent, C F Cañete-Gibas, C Gil-Durán, A M Glushakova, M F M Gonçalves, M González, M Gorczak, C Gorton, F E Guard, A L Guarnizo, J Guarro, M Gutiérrez, P Hamal, L T Hien, A D Hocking, J Houbraken, G C Hunter, C A Inácio, M Jourdan, V I Kapitonov, L Kelly, T N Khanh, K Kisło, L Kiss, A Kiyashko, M Kolařík, J Kruse, A Kubátová, V Kučera, I Kučerová, I Kušan, H B Lee, G Levicán, A Lewis, N V Liem, K Liimatainen, H J Lim, M N Lyons, J G Maciá-Vicente, V Magaña-Dueñas, R Mahiques, E F Malysheva, P A S Marbach, P Marinho, N Matočec, A R McTaggart, A Mešić, L Morin, J M Muñoz-Mohedano, A Navarro-Ródenas, C P Nicolli, R L Oliveira, E Otsing, C L Ovrebo, T A Pankratov, A Paños, A Paz-Conde, A Pérez-Sierra, C Phosri, Á Pintos, A Pošta, S Prencipe, E Rubio, A Saitta, L S Sales, L Sanhueza, L A Shuttleworth, J Smith, M E Smith, D Spadaro, M Spetik, M Sochor, Z Sochorová, J O Sousa, N Suwannasai, L Tedersoo, H M Thanh, L D Thao, Z Tkalčec, N Vaghefi, A S Venzhik, A Verbeken, A Vizzini, S Voyron, M Wainhouse, A J S Whalley, M Wrzosek, M Zapata, I Zeil-Rolfe, J Z Groenewald","doi":"10.3767/persoonia.2020.44.11","DOIUrl":"https://doi.org/10.3767/persoonia.2020.44.11","url":null,"abstract":"<p><p>Novel species of fungi described in this study include those from various countries as follows: <b>Antarctica</b>, <i>Cladosporium arenosum</i> from marine sediment sand. <b>Argentina</b>, <i>Kosmimatamyces alatophylus</i> (incl. <i>Kosmimatamyces</i> gen. nov.) from soil. <b>Australia</b>, <i>Aspergillus banksianus</i>, <i>Aspergillus kumbius</i>, <i>Aspergillus luteorubrus</i>, <i>Aspergillus malvicolor</i> and <i>Aspergillus nanangensis</i> from soil, <i>Erysiphe medicaginis</i> from leaves of <i>Medicago polymorpha</i>, <i>Hymenotorrendiella communis</i> on leaf litter of <i>Eucalyptus bicostata</i>, <i>Lactifluus albopicri</i> and <i>Lactifluus austropiperatus</i> on soil, <i>Macalpinomyces collinsiae</i> on <i>Eriachne benthamii</i>, <i>Marasmius vagus</i> on soil, <i>Microdochium dawsoniorum</i> from leaves of <i>Sporobolus natalensis</i>, <i>Neopestalotiopsis nebuloides</i> from leaves of <i>Sporobolus elongatus</i>, <i>Pestalotiopsis etonensis</i> from leaves of <i>Sporobolus jacquemontii</i>, <i>Phytophthora personensis</i> from soil associated with dying <i>Grevillea mccutcheonii.</i> <b>Brazil</b>, <i>Aspergillus oxumiae</i> from soil, <i>Calvatia baixaverdensis</i> on soil, <i>Geastrum calycicoriaceum</i> on leaf litter, <i>Greeneria kielmeyerae</i> on leaf spots of <i>Kielmeyera coriacea</i>. <b>Chile</b>, <i>Phytophthora aysenensis</i> on collar rot and stem of <i>Aristotelia chilensis.</i> <b>Croatia</b>, <i>Mollisia gibbospora</i> on fallen branch of <i>Fagus sylvatica.</i> <b>Czech Republic</b>, <i>Neosetophoma hnaniceana</i> from <i>Buxus sempervirens.</i> <b>Ecuador</b>, <i>Exophiala frigidotolerans</i> from soil. <b>Estonia</b>, <i>Elaphomyces bucholtzii</i> in soil. <b>France</b>, <i>Venturia paralias</i> from leaves of <i>Euphorbia paralias.</i> <b>India</b>, <i>Cortinarius balteatoindicus</i> and <i>Cortinarius ulkhagarhiensis</i> on leaf litter. <b>Indonesia</b>, <i>Hymenotorrendiella indonesiana</i> on <i>Eucalyptus urophylla</i> leaf litter. <b>Italy</b>, <i>Penicillium taurinense</i> from indoor chestnut mill. <b>Malaysia</b>, <i>Hemileucoglossum kelabitense</i> on soil, <i>Satchmopsis pini</i> on dead needles of <i>Pinus tecunumanii.</i> <b>Poland</b>, <i>Lecanicillium praecognitum</i> on insects' frass. <b>Portugal</b>, <i>Neodevriesia aestuarina</i> from saline water. <b>Republic of Korea</b>, <i>Gongronella namwonensis</i> from freshwater. <b>Russia</b>, <i>Candida pellucida</i> from <i>Exomias pellucidus</i>, <i>Heterocephalacria septentrionalis</i> as endophyte from <i>Cladonia rangiferina</i>, <i>Vishniacozyma phoenicis</i> from dates fruit, <i>Volvariella paludosa</i> from swamp. <b>Slovenia</b>, <i>Mallocybe crassivelata</i> on soil. <b>South Africa</b>, <i>Beltraniella podocarpi</i>, <i>Hamatocanthoscypha podocarpi</i>, <i>Coleophoma podocarpi</i> and <i>Nothoseiridium podocarpi</i> (incl. <i>Nothoseiridium</i> gen. nov.) from leaves of <i>Podocarpus latifolius</i>, <i>Gyrothrix encephalarti</i> from le","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"301-459"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3767/persoonia.2020.44.11","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38634878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2019-12-16DOI: 10.3767/persoonia.2020.44.05
L H Han, G Wu, E Horak, R E Halling, J Xu, E S T Ndolo, H Sato, N Fechner, Y P Sharma, Z L Yang
Strobilomyces is broadly distributed geographically and serves an important ecological function. However, it has been difficult to delimit species within the genus, primarily due to developmental variations and phenotypic plasticity. To elucidate phylogenetic relationships among species within the genus and to understand its species diversity, especially in Asia, materials of the genus collected from five continents (Africa, Asia, Australia, Europe, and North/Central America) were investigated. The phylogeny of Strobilomyces was reconstructed based on nucleotide sequences of four genes coding for: the largest and the second largest subunits of the RNA polymerase II (RPB1 and RPB2); the translation elongation factor subunit 1-α (TEF1); and the mitochondrial cytochrome oxidase subunit 3 (COX3). The combined results based on molecular phylogenetics, morphological characters, host tree associations, and geographical distribution patterns support a new classification consisting of two sections, sect. Strobilomyces and sect. Echinati. Using the genealogical concordance phylogenetic species recognition (GCPSR) approach, at least 33 phylogenetic species in Asia can be delimited, all of which are supported by morphological features, and five phylogenetic species remain to be described. The mountainous region of Southwest China is especially special, containing at least 21 species and likely represents a centre of diversification. We further compared our specimens with the type specimens of 25 species of Strobilomyces. Our comparisons suggest that, there are a total of 31 distinct species, while S. sanmingensis, S. verruculosus, S. subnigricans, and S. zangii/S. areolatus, are synonyms of S. mirandus, S. giganteus, S. alpinus and S. seminudus, respectively. Eight new species, namely, S. albidus, S. anthracinus, S. calidus, S. cingulatus, S. densisquamosus, S. douformis, S. microreticulatus and S. pinophilus, are described. A dichotomous key to the Asian Strobilomyces species is provided.
{"title":"Phylogeny and species delimitation of <i>Strobilomyces</i> (<i>Boletaceae</i>), with an emphasis on the Asian species.","authors":"L H Han, G Wu, E Horak, R E Halling, J Xu, E S T Ndolo, H Sato, N Fechner, Y P Sharma, Z L Yang","doi":"10.3767/persoonia.2020.44.05","DOIUrl":"https://doi.org/10.3767/persoonia.2020.44.05","url":null,"abstract":"<p><p><i>Strobilomyces</i> is broadly distributed geographically and serves an important ecological function. However, it has been difficult to delimit species within the genus, primarily due to developmental variations and phenotypic plasticity. To elucidate phylogenetic relationships among species within the genus and to understand its species diversity, especially in Asia, materials of the genus collected from five continents (Africa, Asia, Australia, Europe, and North/Central America) were investigated. The phylogeny of <i>Strobilomyces</i> was reconstructed based on nucleotide sequences of four genes coding for: the largest and the second largest subunits of the RNA polymerase II (<i>RPB</i>1 and <i>RPB</i>2); the translation elongation factor subunit 1-α (<i>TEF</i>1); and the mitochondrial cytochrome oxidase subunit 3 (<i>COX</i>3). The combined results based on molecular phylogenetics, morphological characters, host tree associations, and geographical distribution patterns support a new classification consisting of two sections, sect. <i>Strobilomyces</i> and sect. <i>Echinati</i>. Using the genealogical concordance phylogenetic species recognition (GCPSR) approach, at least 33 phylogenetic species in Asia can be delimited, all of which are supported by morphological features, and five phylogenetic species remain to be described. The mountainous region of Southwest China is especially special, containing at least 21 species and likely represents a centre of diversification. We further compared our specimens with the type specimens of 25 species of <i>Strobilomyces</i>. Our comparisons suggest that, there are a total of 31 distinct species, while <i>S. sanmingensis, S. verruculosus</i>, <i>S. subnigricans</i>, and <i>S. zangii</i>/<i>S. areolatus</i>, are synonyms of <i>S. mirandus</i>, <i>S. giganteus</i>, <i>S. alpinus</i> and <i>S. seminudus</i>, respectively. Eight new species, namely, <i>S. albidus</i>, <i>S. anthracinus</i>, <i>S. calidus</i>, <i>S. cingulatus</i>, <i>S. densisquamosus</i>, <i>S. douformis</i>, <i>S. microreticulatus</i> and <i>S. pinophilus</i>, are described. A dichotomous key to the Asian <i>Strobilomyces</i> species is provided.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"113-139"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3767/persoonia.2020.44.05","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38538554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2020-02-19DOI: 10.3767/persoonia.2020.44.06
D Thanakitpipattana, K Tasanathai, S Mongkolsamrit, A Khonsanit, S Lamlertthon, J J Luangsa-Ard
Two new fungal genera and six species occurring on insects in the orders Orthoptera and Phasmatodea (superorder Orthopterida) were discovered that are distributed across three families in the Hypocreales. Sixty-seven sequences generated in this study were used in a multi-locus phylogenetic study comprising SSU, LSU, TEF, RPB1 and RPB2 together with the nuclear intergenic region (IGR). These new taxa are introduced as Metarhizium gryllidicola, M. phasmatodeae, Neotorrubiella chinghridicola, Ophiocordyceps kobayasii, O. krachonicola and Petchia siamensis. Petchia siamensis shows resemblance to Cordyceps mantidicola by infecting egg cases (ootheca) of praying mantis (Mantidae) and having obovoid perithecial heads but differs in the size of its perithecia and ascospore shape. Two new species in the Metarhizium cluster belonging to the M. anisopliae complex are described that differ from known species with respect to phialide size, conidia and host. Neotorrubiella chinghridicola resembles Torrubiella in the absence of a stipe and can be distinguished by the production of whole ascospores, which are not commonly found in Torrubiella (except in Torrubiella hemipterigena, which produces multiseptate, whole ascospores). Ophiocordyceps krachonicola is pathogenic to mole crickets and shows resemblance to O. nigrella, O. ravenelii and O. barnesii in having darkly pigmented stromata. Ophiocordyceps kobayasii occurs on small crickets, and is the phylogenetic sister species of taxa in the 'sphecocephala' clade.
{"title":"Fungal pathogens occurring on <i>Orthopterida</i> in Thailand.","authors":"D Thanakitpipattana, K Tasanathai, S Mongkolsamrit, A Khonsanit, S Lamlertthon, J J Luangsa-Ard","doi":"10.3767/persoonia.2020.44.06","DOIUrl":"https://doi.org/10.3767/persoonia.2020.44.06","url":null,"abstract":"<p><p>Two new fungal genera and six species occurring on insects in the orders Orthoptera and Phasmatodea (superorder Orthopterida) were discovered that are distributed across three families in the <i>Hypocreales</i>. Sixty-seven sequences generated in this study were used in a multi-locus phylogenetic study comprising SSU, LSU, <i>TEF</i>, <i>RPB1</i> and <i>RPB2</i> together with the nuclear intergenic region (IGR). These new taxa are introduced as <i>Metarhizium gryllidicola</i>, <i>M. phasmatodeae</i>, <i>Neotorrubiella chinghridicola</i>, <i>Ophiocordyceps kobayasii</i>, <i>O. krachonicola</i> and <i>Petchia siamensis</i>. <i>Petchia siamensis</i> shows resemblance to <i>Cordyceps mantidicola</i> by infecting egg cases (ootheca) of praying mantis (Mantidae) and having obovoid perithecial heads but differs in the size of its perithecia and ascospore shape. Two new species in the <i>Metarhizium</i> cluster belonging to the <i>M. anisopliae</i> complex are described that differ from known species with respect to phialide size, conidia and host. <i>Neotorrubiella chinghridicola</i> resembles <i>Torrubiella</i> in the absence of a stipe and can be distinguished by the production of whole ascospores, which are not commonly found in <i>Torrubiella</i> (except in <i>Torrubiella hemipterigena</i>, which produces multiseptate, whole ascospores)<i>. Ophiocordyceps krachonicola</i> is pathogenic to mole crickets and shows resemblance to <i>O. nigrella</i>, <i>O. ravenelii</i> and <i>O. barnesii</i> in having darkly pigmented stromata. <i>Ophiocordyceps kobayasii</i> occurs on small crickets, and is the phylogenetic sister species of taxa in the 'sphecocephala' clade.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"140-160"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3767/persoonia.2020.44.06","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38538555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2019-05-27DOI: 10.3767/persoonia.2020.44.01
W M Jaklitsch, H Voglmayr
Fresh collections and their ascospore and conidial isolates backed up by type studies and molecular phylogenetic analyses of a multigene matrix of partial nuSSU-, complete ITS, partial LSU rDNA, rpb2, tef1 and tub2 sequences were used to evaluate the boundaries and species composition of Fenestella and related genera of the Cucurbitariaceae. Eight species, of which five are new, are recognised in Fenestella s.str., 13 in Parafenestella with eight new species and two in the new genus Synfenestella with one new species. Cucurbitaria crataegi is combined in Fenestella, C. sorbi in Synfenestella, Fenestella faberi and Thyridium salicis in Parafenestella. Cucurbitaria subcaespitosa is distinct from C. sorbi and combined in Neocucurbitaria. Fenestella minor is a synonym of Valsa tetratrupha, which is combined in Parafenestella. Cucurbitaria marchica is synonymous with Parafenestella salicis, Fenestella bavarica with S. sorbi, F. macrospora with F. media, and P. mackenziei is synonymous with P. faberi, and the latter is lectotypified. Cucurbitaria sorbi, C. subcaespitosa and Fenestella macrospora are lecto- and epitypified, Cucurbitaria crataegi, Fenestella media, F. minor and Valsa tetratrupha are epitypified in order to stabilise the names in their phylogenetic positions. A neotype is proposed for Thyridium salicis. A determinative key to species is given. Asexual morphs of fenestelloid fungi are phoma-like and do not differ from those of other representatives of the Cucurbitariaceae. The phylogenetic structure of the fenestelloid clades is complex and can only be resolved at the species level by protein-coding genes, such as rpb2, tef1 and tub2. All fungal species studied here occur, as far as has been possible to determine, on members of Diaporthales, most frequently on asexual and sexual morphs of Cytospora.
{"title":"Fenestelloid clades of the <i>Cucurbitariaceae</i>.","authors":"W M Jaklitsch, H Voglmayr","doi":"10.3767/persoonia.2020.44.01","DOIUrl":"https://doi.org/10.3767/persoonia.2020.44.01","url":null,"abstract":"<p><p>Fresh collections and their ascospore and conidial isolates backed up by type studies and molecular phylogenetic analyses of a multigene matrix of partial nuSSU-, complete ITS, partial LSU rDNA, <i>rpb2</i>, <i>tef1</i> and <i>tub2</i> sequences were used to evaluate the boundaries and species composition of <i>Fenestella</i> and related genera of the <i>Cucurbitariaceae</i>. Eight species, of which five are new, are recognised in <i>Fenestella</i> s.str., 13 in <i>Parafenestella</i> with eight new species and two in the new genus <i>Synfenestella</i> with one new species. <i>Cucurbitaria crataegi</i> is combined in <i>Fenestella</i>, <i>C. sorbi</i> in <i>Synfenestella</i>, <i>Fenestella faberi</i> and <i>Thyridium salicis</i> in <i>Parafenestella</i>. <i>Cucurbitaria subcaespitosa</i> is distinct from <i>C. sorbi</i> and combined in <i>Neocucurbitaria</i>. <i>Fenestella minor</i> is a synonym of <i>Valsa tetratrupha</i>, which is combined in <i>Parafenestella</i>. <i>Cucurbitaria marchica</i> is synonymous with <i>Parafenestella salicis</i>, <i>Fenestella bavarica</i> with <i>S. sorbi</i>, <i>F. macrospora</i> with <i>F. media</i>, and <i>P. mackenziei</i> is synonymous with <i>P. faberi</i>, and the latter is lectotypified. <i>Cucurbitaria sorbi</i>, <i>C. subcaespitosa</i> and <i>Fenestella macrospora</i> are lecto- and epitypified, <i>Cucurbitaria crataegi</i>, <i>Fenestella media</i>, <i>F. minor</i> and <i>Valsa tetratrupha</i> are epitypified in order to stabilise the names in their phylogenetic positions. A neotype is proposed for <i>Thyridium salicis</i>. A determinative key to species is given. Asexual morphs of fenestelloid fungi are phoma-like and do not differ from those of other representatives of the <i>Cucurbitariaceae</i>. The phylogenetic structure of the fenestelloid clades is complex and can only be resolved at the species level by protein-coding genes, such as <i>rpb2</i>, <i>tef1</i> and <i>tub2</i>. All fungal species studied here occur, as far as has been possible to determine, on members of <i>Diaporthales</i>, most frequently on asexual and sexual morphs of <i>Cytospora</i>.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"1-40"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/b7/f2/per-2020-44-1.PMC7567968.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38540243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2020-04-24DOI: 10.3767/persoonia.2020.44.07
J C Zamora, S Ekman
We present a multilocus phylogeny of the class Dacrymycetes, based on data from the 18S, ITS, 28S, RPB1, RPB2, TEF-1α, 12S, and ATP6 DNA regions, with c. 90 species including the types of most currently accepted genera. A variety of methodological approaches was used to infer phylogenetic relationships among the Dacrymycetes, from a supermatrix strategy using maximum likelihood and Bayesian inference on a concatenated dataset, to coalescence-based calculations, such as quartet-based summary methods of independent single-locus trees, and Bayesian integration of single-locus trees into a species tree under the multispecies coalescent. We evaluate for the first time the taxonomic usefulness of some cytological phenotypic characters, i.e., vacuolar contents (vacuolar bodies and lipid bodies), number of nuclei of recently discharged basidiospores, and pigments, with especial emphasis on carotenoids. These characters, along with several others traditionally used for the taxonomy of this group (basidium shape, presence and morphology of clamp connections, morphology of the terminal cells of cortical/marginal hyphae, presence and degree of ramification of the hyphidia), are mapped on the resulting phylogenies and their evolution through the class Dacrymycetes discussed. Our analyses reveal five lineages that putatively represent five different families, four of which are accepted and named. Three out of these four lineages correspond to previously circumscribed and published families (Cerinomycetaceae, Dacrymycetaceae, and Unilacrymaceae), and one is proposed as the new family Dacryonaemataceae. Provisionally, only a single order, Dacrymycetales, is accepted within the class. Furthermore, the systematics of the two smallest families, Dacryonaemataceae and Unilacrymaceae, are investigated to the species level, using coalescence-based species delimitation on multilocus DNA data, and a detailed morphological study including morphometric analyses of the basidiospores. Three species are accepted in Dacryonaema, the type, Da. rufum, the newly combined Da. macnabbii (basionym Dacrymyces macnabbii), and a new species named Da. macrosporum. Two species are accepted in Unilacryma, the new U. bispora, and the type, U. unispora, the latter treated in a broad sense pending improved sampling across the Holarctic.
我们基于 18S、ITS、28S、RPB1、RPB2、TEF-1α、12S 和 ATP6 DNA 区域的数据,建立了 Dacrymycetes 类的多焦点系统发生,包括目前公认的大多数属的约 90 个物种。我们采用了多种方法来推断Dacrymycetes之间的系统发育关系,包括使用最大似然法和贝叶斯推断法的超级矩阵策略(supermatrix strategy)、基于聚合的计算(如基于独立单焦点树的四元组汇总法)以及在多物种聚合下将单焦点树整合为物种树的贝叶斯法。我们首次评估了一些细胞学表型特征(即空泡内容物(空泡体和脂体)、最近排出的基生孢子的核数目和色素,尤其是类胡萝卜素)在分类学上的作用。这些特征以及传统上用于该类生物分类的其他一些特征(基质的形状、夹子连接的存在和形态、皮层/边缘菌丝末端细胞的形态、菌丝的存在和分枝程度),都被绘制在所得到的系统进化图上,并讨论了它们在 Dacrymycetes 类中的进化过程。我们的分析揭示了可能代表五个不同科的五个系,其中四个系已被接受并命名。在这四个系中,有三个系对应于以前圈定并公布的科(Cerinomycetaceae、Dacrymycetaceae 和 Unilacrymaceae),还有一个系被提议为新科 Dacryonaemataceae。目前,该类中只接受了一个目,即 Dacrymycetales。此外,还对两个最小的科 Dacryonaemataceae 和 Unilacrymaceae 的系统学进行了种级研究,采用基于多焦点 DNA 数据的聚合法进行种的划分,并进行了详细的形态学研究,包括基生孢子的形态计量分析。macnabbii (basionym Dacrymyces macnabbii),以及一个名为 Da.Unilacryma 中的两个种被接受,即新的 U. bispora 和模式标本 U. unispora,后者被广义地对待,以待全北极地区取样的改进。
{"title":"Phylogeny and character evolution in the <i>Dacrymycetes</i>, and systematics of <i>Unilacrymaceae</i> and <i>Dacryonaemataceae</i> fam. nov.","authors":"J C Zamora, S Ekman","doi":"10.3767/persoonia.2020.44.07","DOIUrl":"10.3767/persoonia.2020.44.07","url":null,"abstract":"<p><p>We present a multilocus phylogeny of the class <i>Dacrymycetes</i>, based on data from the 18S, ITS, 28S, <i>RPB1</i>, <i>RPB2</i>, <i>TEF-1α</i>, 12S, and <i>ATP6</i> DNA regions, with c. 90 species including the types of most currently accepted genera. A variety of methodological approaches was used to infer phylogenetic relationships among the <i>Dacrymycetes</i>, from a supermatrix strategy using maximum likelihood and Bayesian inference on a concatenated dataset, to coalescence-based calculations, such as quartet-based summary methods of independent single-locus trees, and Bayesian integration of single-locus trees into a species tree under the multispecies coalescent. We evaluate for the first time the taxonomic usefulness of some cytological phenotypic characters, i.e., vacuolar contents (vacuolar bodies and lipid bodies), number of nuclei of recently discharged basidiospores, and pigments, with especial emphasis on carotenoids. These characters, along with several others traditionally used for the taxonomy of this group (basidium shape, presence and morphology of clamp connections, morphology of the terminal cells of cortical/marginal hyphae, presence and degree of ramification of the hyphidia), are mapped on the resulting phylogenies and their evolution through the class <i>Dacrymycetes</i> discussed. Our analyses reveal five lineages that putatively represent five different families, four of which are accepted and named. Three out of these four lineages correspond to previously circumscribed and published families (<i>Cerinomycetaceae</i>, <i>Dacrymycetaceae</i>, and <i>Unilacrymaceae</i>), and one is proposed as the new family <i>Dacryonaemataceae</i>. Provisionally, only a single order, <i>Dacrymycetales</i>, is accepted within the class. Furthermore, the systematics of the two smallest families, <i>Dacryonaemataceae</i> and <i>Unilacrymaceae</i>, are investigated to the species level, using coalescence-based species delimitation on multilocus DNA data, and a detailed morphological study including morphometric analyses of the basidiospores. Three species are accepted in <i>Dacryonaema</i>, the type, <i>Da. rufum</i>, the newly combined <i>Da. macnabbii</i> (basionym <i>Dacrymyces macnabbii</i>), and a new species named <i>Da. macrosporum</i>. Two species are accepted in <i>Unilacryma</i>, the new <i>U. bispora</i>, and the type, <i>U. unispora</i>, the latter treated in a broad sense pending improved sampling across the Holarctic.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"161-205"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/5d/ea/per-2020-44-7.PMC7567964.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38538556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2020-06-12DOI: 10.3767/persoonia.2020.44.10
L Delgat, R Courtecuisse, E De Crop, F Hampe, T A Hofmann, C Manz, M Piepenbring, M Roy, A Verbeken
Species of the ectomycorrhizal genus Lactifluus, and often entire sections, are typically unique to a single continent. Given these biogeographic patterns, an interesting region to study their diversity is Central America and the Caribbean, since the region is closely connected to and often considered a part of the North American continent, but biogeographically belong to the Neotropical realm, and comprises several regions with different geologic histories. Based on a multi-gene phylogeny and morphological study, this study shows that Central America, Mexico and the Caribbean harbour at least 35 Lactifluus species, of which 33 were never reported outside of this region. It was found that species from the Caribbean generally show affinities to South American taxa, while species from the Central American mainland generally show affinities to Northern hemispheric taxa. We hypothesise that host specificity and/or climate play a crucial role in these different origins of diversity. Because of these different affinities, Caribbean islands harbour a completely different Lactifluus diversity than the Central American mainland. The majority of species occurring on the islands can be considered endemic to certain islands or island groups. In this paper, detailed morphological descriptions are given, with a focus on the unique diversity of the islands, and identification keys to all hitherto described Lactifluus species occurring in Central America and the Caribbean are provided. One new section, Lactifluus sect. Nebulosi, and three new species, Lactifluus guadeloupensis, Lactifluus lepus and Lactifluus marmoratus are described.
{"title":"<i>Lactifluus</i> (<i>Russulaceae</i>) diversity in Central America and the Caribbean: melting pot between realms.","authors":"L Delgat, R Courtecuisse, E De Crop, F Hampe, T A Hofmann, C Manz, M Piepenbring, M Roy, A Verbeken","doi":"10.3767/persoonia.2020.44.10","DOIUrl":"https://doi.org/10.3767/persoonia.2020.44.10","url":null,"abstract":"<p><p>Species of the ectomycorrhizal genus <i>Lactifluus</i>, and often entire sections, are typically unique to a single continent. Given these biogeographic patterns, an interesting region to study their diversity is Central America and the Caribbean, since the region is closely connected to and often considered a part of the North American continent, but biogeographically belong to the Neotropical realm, and comprises several regions with different geologic histories. Based on a multi-gene phylogeny and morphological study, this study shows that Central America, Mexico and the Caribbean harbour at least 35 <i>Lactifluus</i> species, of which 33 were never reported outside of this region. It was found that species from the Caribbean generally show affinities to South American taxa, while species from the Central American mainland generally show affinities to Northern hemispheric taxa. We hypothesise that host specificity and/or climate play a crucial role in these different origins of diversity. Because of these different affinities, Caribbean islands harbour a completely different <i>Lactifluus</i> diversity than the Central American mainland. The majority of species occurring on the islands can be considered endemic to certain islands or island groups. In this paper, detailed morphological descriptions are given, with a focus on the unique diversity of the islands, and identification keys to all hitherto described <i>Lactifluus</i> species occurring in Central America and the Caribbean are provided. One new section, <i>Lactifluus</i> sect. <i>Nebulosi</i>, and three new species, <i>Lactifluus guadeloupensis</i>, <i>Lactifluus lepus</i> and <i>Lactifluus marmoratus</i> are described.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"278-300"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3767/persoonia.2020.44.10","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38538559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-06-01Epub Date: 2020-06-11DOI: 10.3767/persoonia.2020.44.09
J J S Oliveira, J-M Moncalvo, S Margaritescu, M Capelari
The largest and most recently emended Marasmius sect. Globulares (Globulares-Sicci complex) has increased in number of species annually while its infrasectional organization remains inconclusive. During forays in remnants of the Atlantic Rainforest in Brazil, 24 taxa of Marasmius belonging to sect. Globulares were collected from which nine are herein proposed as new: Marasmius altoribeirensis, M. ambicellularis, M. hobbitii, M. luteoolivaceus, M. neotropicalis, M. pallidibrunneus, M. pseudoniveoaffinis, M. rhabarbarinoides and M. venatifolius. We took this opportunity to evaluate sect. Globulares sensu Antonín & Noordel. in particular, combining morphological examination and both single and multilocus phylogenetic analyses using LSU and ITS data, including Neotropical samples to a broader and more globally distributed sampling of over 200 strains. Three different approaches were developed in order to better use the genetic information via Bayesian and Maximum Likelihood analyses. The implementation of these approaches resulted in: i) the phylogenetic placement of the new and known taxa herein studied among the other taxa of a wide sampling of the section; ii) the reconstruction of improved phylogenetic trees presenting more strongly supported resolution especially from intermediate to deep nodes; iii) clearer evidence indicating that the series within sect. Sicci and sect. Globulares in the traditional concept are non-monophyletic by this more stringent evaluation; and iv) the existence of several monophyletic suprespecific groups equivalent to the stirpes of Singer - clusters of morphologically similar species. These two latter points corroborate with findings of previous studies implementing analyses with the entire genus. Based on these results, we proposed a new infrasectional classification elevating Singer's concept of stirpes to series. Thirteen new series, the emendation of three extant series and three subsections gathering these series based on the major clades are proposed.
最大和最近修订的Marasmius组。Globulares (Globulares- sicci复合体)的物种数量每年都在增加,但其次节组织仍然不确定。在对巴西大西洋热带雨林遗址的调查中,共收集到球状门Marasmius属24个分类群,其中9个为新分类群:altoribeiensis、M. ambicellularis、M. hobbitii、M. luteoolivaceus、M. neotropicalis、M. pallidibrunneus、M. pseudoniveoaffinis、M. rhabarbarinoides和M. venatifolius。我们借此机会评估了Globulares sensu Antonín & Noordel教派。特别是,结合形态学检查和单位点和多位点系统发育分析,使用LSU和ITS数据,包括新热带样本到更广泛和更全球分布的200多个菌株的样本。为了更好地利用遗传信息,通过贝叶斯和最大似然分析开发了三种不同的方法。这些方法的实施取得了以下结果:1)将本文研究的新的和已知的分类群与广泛取样的其他分类群进行系统发育定位;Ii)改进的系统发育树重建具有更强的支持分辨率,特别是从中间到深层节点;iii)更明确的证据表明,通过这种更严格的评估,传统概念中的Sicci节和Globulares节中的系列是非单系的;iv)存在几个单系超特异类群,相当于形态相似物种的辛格群的类群。后两点证实了先前对整个属进行分析的研究结果。基于这些结果,我们提出了一种新的下截面分类方法,将辛格的stirpes概念提升到级数。提出了13个新系列,对3个现存系列进行了修正,并根据主要演化支划分了3个分支。
{"title":"A morphological and phylogenetic evaluation of <i>Marasmius</i> sect. <i>Globulares</i> (Globulares-Sicci complex) with nine new taxa from the Neotropical Atlantic Forest.","authors":"J J S Oliveira, J-M Moncalvo, S Margaritescu, M Capelari","doi":"10.3767/persoonia.2020.44.09","DOIUrl":"https://doi.org/10.3767/persoonia.2020.44.09","url":null,"abstract":"<p><p>The largest and most recently emended <i>Marasmius</i> sect. <i>Globulares</i> (Globulares-Sicci complex) has increased in number of species annually while its infrasectional organization remains inconclusive. During forays in remnants of the Atlantic Rainforest in Brazil, 24 taxa of <i>Marasmius</i> belonging to sect. <i>Globulares</i> were collected from which nine are herein proposed as new: <i>Marasmius altoribeirensis</i>, <i>M. ambicellularis</i>, <i>M. hobbitii</i>, <i>M. luteoolivaceus</i>, <i>M. neotropicalis</i>, <i>M. pallidibrunneus</i>, <i>M. pseudoniveoaffinis</i>, <i>M. rhabarbarinoides</i> and <i>M. venatifolius</i>. We took this opportunity to evaluate sect. <i>Globulares sensu</i> Antonín & Noordel. in particular, combining morphological examination and both single and multilocus phylogenetic analyses using LSU and ITS data, including Neotropical samples to a broader and more globally distributed sampling of over 200 strains. Three different approaches were developed in order to better use the genetic information via Bayesian and Maximum Likelihood analyses. The implementation of these approaches resulted in: i) the phylogenetic placement of the new and known taxa herein studied among the other taxa of a wide sampling of the section; ii) the reconstruction of improved phylogenetic trees presenting more strongly supported resolution especially from intermediate to deep nodes; iii) clearer evidence indicating that the series within sect. <i>Sicci</i> and sect. <i>Globulares</i> in the traditional concept are non-monophyletic by this more stringent evaluation; and iv) the existence of several monophyletic suprespecific groups equivalent to the stirpes of Singer - clusters of morphologically similar species. These two latter points corroborate with findings of previous studies implementing analyses with the entire genus. Based on these results, we proposed a new infrasectional classification elevating Singer's concept of stirpes to series. Thirteen new series, the emendation of three extant series and three subsections gathering these series based on the major clades are proposed.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":"44 ","pages":"240-277"},"PeriodicalIF":9.1,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3767/persoonia.2020.44.09","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38538558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}