Pub Date : 2024-06-04DOI: 10.1088/1361-6579/ad4e8f
Anna Crispino, Alessandro Loppini, Ilija Uzelac, Shahriar Iravanian, Neal K Bhatia, Michael Burke, Simonetta Filippi, Flavio H Fenton, Alessio Gizzi
Objective.Temperature plays a crucial role in influencing the spatiotemporal dynamics of the heart. Electrical instabilities due to specific thermal conditions typically lead to early period-doubling bifurcations and beat-to-beat alternans. These pro-arrhythmic phenomena manifest in voltage and calcium traces, resulting in compromised contractile behaviors. In such intricate scenario, dual optical mapping technique was used to uncover unexplored multi-scale and nonlinear couplings, essential for early detection and understanding of cardiac arrhythmia.Approach.We propose a methodological analysis of synchronized voltage-calcium signals for detecting alternans, restitution curves, and spatiotemporal alternans patterns under different thermal conditions, based on integral features calculation. To validate our approach, we conducted a cross-species investigation involving rabbit and guinea pig epicardial ventricular surfaces and human endocardial tissue under pacing-down protocols.Main results.We show that the proposed integral feature, as the area under the curve, could be an easily applicable indicator that may enhance the predictability of the onset and progression of cardiac alternans. Insights into spatiotemporal correlation analysis of characteristic spatial lengths across different heart species were further provided.Significance.Exploring cross-species thermoelectric features contributes to understanding temperature-dependent proarrhythmic regimes and their implications on coupled spatiotemporal voltage-calcium dynamics. The findings provide preliminary insights and potential strategies for enhancing arrhythmia detection and treatment.
{"title":"A cross species thermoelectric and spatiotemporal analysis of alternans in live explanted hearts using dual voltage-calcium fluorescence optical mapping.","authors":"Anna Crispino, Alessandro Loppini, Ilija Uzelac, Shahriar Iravanian, Neal K Bhatia, Michael Burke, Simonetta Filippi, Flavio H Fenton, Alessio Gizzi","doi":"10.1088/1361-6579/ad4e8f","DOIUrl":"10.1088/1361-6579/ad4e8f","url":null,"abstract":"<p><p><i>Objective.</i>Temperature plays a crucial role in influencing the spatiotemporal dynamics of the heart. Electrical instabilities due to specific thermal conditions typically lead to early period-doubling bifurcations and beat-to-beat alternans. These pro-arrhythmic phenomena manifest in voltage and calcium traces, resulting in compromised contractile behaviors. In such intricate scenario, dual optical mapping technique was used to uncover unexplored multi-scale and nonlinear couplings, essential for early detection and understanding of cardiac arrhythmia.<i>Approach.</i>We propose a methodological analysis of synchronized voltage-calcium signals for detecting alternans, restitution curves, and spatiotemporal alternans patterns under different thermal conditions, based on integral features calculation. To validate our approach, we conducted a cross-species investigation involving rabbit and guinea pig epicardial ventricular surfaces and human endocardial tissue under pacing-down protocols.<i>Main results.</i>We show that the proposed integral feature, as the area under the curve, could be an easily applicable indicator that may enhance the predictability of the onset and progression of cardiac alternans. Insights into spatiotemporal correlation analysis of characteristic spatial lengths across different heart species were further provided.<i>Significance.</i>Exploring cross-species thermoelectric features contributes to understanding temperature-dependent proarrhythmic regimes and their implications on coupled spatiotemporal voltage-calcium dynamics. The findings provide preliminary insights and potential strategies for enhancing arrhythmia detection and treatment.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141076169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-03DOI: 10.1088/1361-6579/ad4e91
Jiaxing Qiu, Juliann M Di Fiore, Narayanan Krishnamurthi, Premananda Indic, John L Carroll, Nelson Claure, James S Kemp, Phyllis A Dennery, Namasivayam Ambalavanan, Debra E Weese-Mayer, Anna Maria Hibbs, Richard J Martin, Eduardo Bancalari, Aaron Hamvas, J Randall Moorman, Douglas E Lake, Katy N Krahn, Amanda M Zimmet, Bradley S Hopkins, Erin K Lonergan, Casey M Rand, Arlene Zadell, Arie Nakhmani, Waldemar A Carlo, Deborah Laney, Colm P Travers, Silvia Vanbuskirk, Carmen D'Ugard, Ana Cecilia Aguilar, Alini Schott, Julie Hoffmann, Laura Linneman
Objective.Highly comparative time series analysis (HCTSA) is a novel approach involving massive feature extraction using publicly available code from many disciplines. The Prematurity-Related Ventilatory Control (Pre-Vent) observational multicenter prospective study collected bedside monitor data from>700extremely preterm infants to identify physiologic features that predict respiratory outcomes.Approach. We calculated a subset of 33 HCTSA features on>7 M 10 min windows of oxygen saturation (SPO2) and heart rate (HR) from the Pre-Vent cohort to quantify predictive performance. This subset included representatives previously identified using unsupervised clustering on>3500HCTSA algorithms. We hypothesized that the best HCTSA algorithms would compare favorably to optimal PreVent physiologic predictor IH90_DPE (duration per event of intermittent hypoxemia events below 90%).Main Results.The top HCTSA features were from a cluster of algorithms associated with the autocorrelation of SPO2 time series and identified low frequency patterns of desaturation as high risk. These features had comparable performance to and were highly correlated with IH90_DPE but perhaps measure the physiologic status of an infant in a more robust way that warrants further investigation. The top HR HCTSA features were symbolic transformation measures that had previously been identified as strong predictors of neonatal mortality. HR metrics were only important predictors at early days of life which was likely due to the larger proportion of infants whose outcome was death by any cause. A simple HCTSA model using 3 top features outperformed IH90_DPE at day of life 7 (.778 versus .729) but was essentially equivalent at day of life 28 (.849 versus .850).Significance. These results validated the utility of a representative HCTSA approach but also provides additional evidence supporting IH90_DPE as an optimal predictor of respiratory outcomes.
{"title":"Highly comparative time series analysis of oxygen saturation and heart rate to predict respiratory outcomes in extremely preterm infants.","authors":"Jiaxing Qiu, Juliann M Di Fiore, Narayanan Krishnamurthi, Premananda Indic, John L Carroll, Nelson Claure, James S Kemp, Phyllis A Dennery, Namasivayam Ambalavanan, Debra E Weese-Mayer, Anna Maria Hibbs, Richard J Martin, Eduardo Bancalari, Aaron Hamvas, J Randall Moorman, Douglas E Lake, Katy N Krahn, Amanda M Zimmet, Bradley S Hopkins, Erin K Lonergan, Casey M Rand, Arlene Zadell, Arie Nakhmani, Waldemar A Carlo, Deborah Laney, Colm P Travers, Silvia Vanbuskirk, Carmen D'Ugard, Ana Cecilia Aguilar, Alini Schott, Julie Hoffmann, Laura Linneman","doi":"10.1088/1361-6579/ad4e91","DOIUrl":"10.1088/1361-6579/ad4e91","url":null,"abstract":"<p><p><i>Objective.</i>Highly comparative time series analysis (HCTSA) is a novel approach involving massive feature extraction using publicly available code from many disciplines. The Prematurity-Related Ventilatory Control (Pre-Vent) observational multicenter prospective study collected bedside monitor data from>700extremely preterm infants to identify physiologic features that predict respiratory outcomes.<i>Approach</i>. We calculated a subset of 33 HCTSA features on>7 M 10 min windows of oxygen saturation (SPO2) and heart rate (HR) from the Pre-Vent cohort to quantify predictive performance. This subset included representatives previously identified using unsupervised clustering on>3500HCTSA algorithms. We hypothesized that the best HCTSA algorithms would compare favorably to optimal PreVent physiologic predictor IH90_DPE (duration per event of intermittent hypoxemia events below 90%).<i>Main Results.</i>The top HCTSA features were from a cluster of algorithms associated with the autocorrelation of SPO2 time series and identified low frequency patterns of desaturation as high risk. These features had comparable performance to and were highly correlated with IH90_DPE but perhaps measure the physiologic status of an infant in a more robust way that warrants further investigation. The top HR HCTSA features were symbolic transformation measures that had previously been identified as strong predictors of neonatal mortality. HR metrics were only important predictors at early days of life which was likely due to the larger proportion of infants whose outcome was death by any cause. A simple HCTSA model using 3 top features outperformed IH90_DPE at day of life 7 (.778 versus .729) but was essentially equivalent at day of life 28 (.849 versus .850).<i>Significance</i>. These results validated the utility of a representative HCTSA approach but also provides additional evidence supporting IH90_DPE as an optimal predictor of respiratory outcomes.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":2.3,"publicationDate":"2024-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11485323/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141076172","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective. Electroencephalography (EEG) is an important kind of bioelectric signal for measuring physiological activities of the brain, and motor imagery (MI) EEG has significant clinical application prospects. Convolutional neural network has become a mainstream algorithm for MI EEG classification, however lack of subject-specific data considerably restricts its decoding accuracy and generalization performance. To address this challenge, a novel transfer learning (TL) framework using auxiliary dataset to improve the MI EEG classification performance of target subject is proposed in this paper.Approach. We developed a multi-source deep domain adaptation ensemble framework (MSDDAEF) for cross-dataset MI EEG decoding. The proposed MSDDAEF comprises three main components: model pre-training, deep domain adaptation, and multi-source ensemble. Moreover, for each component, different designs were examined to verify the robustness of MSDDAEF.Main results. Bidirectional validation experiments were performed on two large public MI EEG datasets (openBMI and GIST). The highest average classification accuracy of MSDDAEF reaches 74.28% when openBMI serves as target dataset and GIST serves as source dataset. While the highest average classification accuracy of MSDDAEF is 69.85% when GIST serves as target dataset and openBMI serves as source dataset. In addition, the classification performance of MSDDAEF surpasses several well-established studies and state-of-the-art algorithms.Significance. The results of this study show that cross-dataset TL is feasible for left/right-hand MI EEG decoding, and further indicate that MSDDAEF is a promising solution for addressing MI EEG cross-dataset variability.
目的:脑电图(EEG)是测量大脑生理活动的一种重要的生物电信号,运动意象脑电图(MI)具有重要的临床应用前景。卷积神经网络(CNN)已成为运动图像脑电图分类的主流算法,但由于缺乏特定对象的数据,其解码精度和泛化性能受到很大限制。为应对这一挑战,本文提出了一种新型迁移学习(TL)框架,利用辅助数据集提高目标受试者的 MI EEG 分类性能:方法:我们为跨数据集 MI 脑电图解码开发了多源深度域自适应集合框架(MSDDAEF)。所提出的 MSDDAEF 由三个主要部分组成:模型预训练、深域适配和多源集合。此外,还对每个组件进行了不同的设计,以验证 MSDDAEF 的鲁棒性:在两个大型公共 MI EEG 数据集(openBMI 和 GIST)上进行了双向验证实验。当 openBMI 作为目标数据集,GIST 作为源数据集时,MSDDAEF 的最高平均分类准确率达到 74.28%。而当 GIST 作为目标数据集,openBMI 作为源数据集时,MSDDAEF 的最高平均分类准确率为 69.85%。此外,MSDDAEF 的分类性能还超过了几项成熟的研究和最先进的算法:本研究的结果表明,跨数据集 TL 对左/右手 MI 脑电图解码是可行的,并进一步表明 MSDDAEF 是解决 MI 脑电图跨数据集变异性的一种有前途的解决方案。
{"title":"Multi-source deep domain adaptation ensemble framework for cross-dataset motor imagery EEG transfer learning.","authors":"Minmin Miao, Zhong Yang, Zhenzhen Sheng, Baoguo Xu, Wenbin Zhang, Xinmin Cheng","doi":"10.1088/1361-6579/ad4e95","DOIUrl":"10.1088/1361-6579/ad4e95","url":null,"abstract":"<p><p><i>Objective</i>. Electroencephalography (EEG) is an important kind of bioelectric signal for measuring physiological activities of the brain, and motor imagery (MI) EEG has significant clinical application prospects. Convolutional neural network has become a mainstream algorithm for MI EEG classification, however lack of subject-specific data considerably restricts its decoding accuracy and generalization performance. To address this challenge, a novel transfer learning (TL) framework using auxiliary dataset to improve the MI EEG classification performance of target subject is proposed in this paper.<i>Approach</i>. We developed a multi-source deep domain adaptation ensemble framework (MSDDAEF) for cross-dataset MI EEG decoding. The proposed MSDDAEF comprises three main components: model pre-training, deep domain adaptation, and multi-source ensemble. Moreover, for each component, different designs were examined to verify the robustness of MSDDAEF.<i>Main results</i>. Bidirectional validation experiments were performed on two large public MI EEG datasets (openBMI and GIST). The highest average classification accuracy of MSDDAEF reaches 74.28% when openBMI serves as target dataset and GIST serves as source dataset. While the highest average classification accuracy of MSDDAEF is 69.85% when GIST serves as target dataset and openBMI serves as source dataset. In addition, the classification performance of MSDDAEF surpasses several well-established studies and state-of-the-art algorithms.<i>Significance</i>. The results of this study show that cross-dataset TL is feasible for left/right-hand MI EEG decoding, and further indicate that MSDDAEF is a promising solution for addressing MI EEG cross-dataset variability.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141076359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective.Impedance pneumography (IP) has provided static assessments of subjects' breathing patterns in previous studies. Evaluating the feasibility and limitation of ambulatory IP based respiratory monitoring needs further investigation on clinically relevant exercise designs. The aim of this study was to evaluate the capacity of an advanced IP in ambulatory respiratory monitoring, and its predictive value in independent ventilatory capacity quantification during cardiopulmonary exercise testing (CPET).Approach.35 volunteers were examined with the same calibration methodology and CPET exercise protocol comprising phases of rest, unloaded, incremental load, maximum load, recovery and further-recovery. In 3 or 4 deep breaths of calibration stage, thoracic impedance and criterion spirometric volume were simultaneously recorded to produce phase-specific prior calibration coefficients (CCs). The IP measurement during exercise protocol was converted by prior CCs to volume estimation curve and thus calculate minute ventilation (VE) independent from the spirometry approach.Main results.Across all measurements, the relative error of IP-derived VE (VER) and flowrate-derived VE (VEf) was less than 13.8%. In Bland-Altman plots, the aggregate VE estimation bias was statistically insignificant for all 3 phases with pedaling exercise and the discrepancy between VERand VEffell within the 95% limits of agreement (95% LoA) for 34 or all subjects in each of all CPET phases.Significance.This work reinforces the independent use of IP as an accurate and robust alternative to flowmeter for applications in cycle ergometry CPET, which could significantly encourage the clinical use of IP and improve the convenience and comfort of CPET.
目的:
在以往的研究中,阻抗气动图(IP)可对受试者的呼吸模式进行静态评估。要评估基于 IP 的非卧床呼吸监测的可行性和局限性,还需要对临床相关的运动设计进行进一步研究。本研究的目的是评估高级 IP 在非卧床呼吸监测中的能力,以及其在心肺运动测试(CPET)中对独立通气能力量化的预测价值。方法:35 名志愿者采用相同的校准方法和 CPET 运动方案(包括休息、无负荷、增量负荷、最大负荷、恢复和进一步恢复阶段)接受检查。在校准阶段的 3 或 4 次深呼吸中,同时记录胸阻抗和标准肺活量,以生成特定阶段的先期校准系数(CC)。运动方案中的 IP 测量值通过先验 CC 转换为容积估计曲线,从而计算出独立于肺活量测量方法的分钟通气量(VE)。在 Bland-Altman 图中,在所有 3 个阶段的蹬踏运动中,总的 VE 估计偏差在统计上不显著,而且在所有 CPET 阶段的每个阶段,34 名或所有受试者的 VER 和 VEff 之间的差异都在 95% 的一致限度(95% LoA)内。
{"title":"Experimental validation of an advanced impedance pneumography for monitoring ventilation volume during programmed cycling exercise.","authors":"Xing Zhou, Qin Liu, Zixuan Bai, Shan Xue, Zhibin Kong, Yixin Ma","doi":"10.1088/1361-6579/ad4951","DOIUrl":"10.1088/1361-6579/ad4951","url":null,"abstract":"<p><p><i>Objective.</i>Impedance pneumography (IP) has provided static assessments of subjects' breathing patterns in previous studies. Evaluating the feasibility and limitation of ambulatory IP based respiratory monitoring needs further investigation on clinically relevant exercise designs. The aim of this study was to evaluate the capacity of an advanced IP in ambulatory respiratory monitoring, and its predictive value in independent ventilatory capacity quantification during cardiopulmonary exercise testing (CPET).<i>Approach.</i>35 volunteers were examined with the same calibration methodology and CPET exercise protocol comprising phases of rest, unloaded, incremental load, maximum load, recovery and further-recovery. In 3 or 4 deep breaths of calibration stage, thoracic impedance and criterion spirometric volume were simultaneously recorded to produce phase-specific prior calibration coefficients (CCs). The IP measurement during exercise protocol was converted by prior CCs to volume estimation curve and thus calculate minute ventilation (VE) independent from the spirometry approach.<i>Main results.</i>Across all measurements, the relative error of IP-derived VE (VE<sub>R</sub>) and flowrate-derived VE (VE<sub>f</sub>) was less than 13.8%. In Bland-Altman plots, the aggregate VE estimation bias was statistically insignificant for all 3 phases with pedaling exercise and the discrepancy between VE<sub>R</sub>and VE<sub>f</sub>fell within the 95% limits of agreement (95% LoA) for 34 or all subjects in each of all CPET phases.<i>Significance.</i>This work reinforces the independent use of IP as an accurate and robust alternative to flowmeter for applications in cycle ergometry CPET, which could significantly encourage the clinical use of IP and improve the convenience and comfort of CPET.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140899110","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-30DOI: 10.1088/1361-6579/ad46e4
Stefan Yu Bögli, Marina Sandra Cherchi, Ihsane Olakorede, Andrea Lavinio, Erta Beqiri, Ethan Moyer, Dick Moberg, Peter Smielewski
Objective.The Root SedLine device is used for continuous electroencephalography (cEEG)-based sedation monitoring in intensive care patients. The cEEG traces can be collected for further processing and calculation of relevant metrics not already provided. Depending on the device settings during acquisition, the acquired traces may be distorted by max/min value cropping or high digitization errors. We aimed to systematically assess the impact of these distortions on metrics used for clinical research in the field of neuromonitoring.Approach.A 16 h cEEG acquired using the Root SedLine device at the optimal screen settings was analyzed. Cropping and digitization error effects were simulated by consecutive reduction of the maximum cEEG amplitude by 2µV or by reducing the vertical resolution. Metrics were calculated within ICM+ using minute-by-minute data, including the total power, alpha delta ratio (ADR), and 95% spectral edge frequency. Data were analyzed by creating violin- or box-plots.Main Results.Cropping led to a continuous reduction in total and band power, leading to corresponding changes in variability thereof. The relative power and ADR were less affected. Changes in resolution led to relevant changes. While the total power and power of low frequencies were rather stable, the power of higher frequencies increased with reducing resolution.Significance.Care must be taken when acquiring and analyzing cEEG waveforms from Root SedLine for clinical research. To retrieve good quality metrics, the screen settings must be kept within the central vertical scale, while pre-processing techniques must be applied to exclude unacceptable periods.
{"title":"Pitfalls and possibilities of using Root SedLine for continuous assessment of EEG waveform-based metrics in intensive care research.","authors":"Stefan Yu Bögli, Marina Sandra Cherchi, Ihsane Olakorede, Andrea Lavinio, Erta Beqiri, Ethan Moyer, Dick Moberg, Peter Smielewski","doi":"10.1088/1361-6579/ad46e4","DOIUrl":"10.1088/1361-6579/ad46e4","url":null,"abstract":"<p><p><i>Objective.</i>The Root SedLine device is used for continuous electroencephalography (cEEG)-based sedation monitoring in intensive care patients. The cEEG traces can be collected for further processing and calculation of relevant metrics not already provided. Depending on the device settings during acquisition, the acquired traces may be distorted by max/min value cropping or high digitization errors. We aimed to systematically assess the impact of these distortions on metrics used for clinical research in the field of neuromonitoring.<i>Approach.</i>A 16 h cEEG acquired using the Root SedLine device at the optimal screen settings was analyzed. Cropping and digitization error effects were simulated by consecutive reduction of the maximum cEEG amplitude by 2<i>µ</i>V or by reducing the vertical resolution. Metrics were calculated within ICM+ using minute-by-minute data, including the total power, alpha delta ratio (ADR), and 95% spectral edge frequency. Data were analyzed by creating violin- or box-plots.<i>Main Results.</i>Cropping led to a continuous reduction in total and band power, leading to corresponding changes in variability thereof. The relative power and ADR were less affected. Changes in resolution led to relevant changes. While the total power and power of low frequencies were rather stable, the power of higher frequencies increased with reducing resolution.<i>Significance.</i>Care must be taken when acquiring and analyzing cEEG waveforms from Root SedLine for clinical research. To retrieve good quality metrics, the screen settings must be kept within the central vertical scale, while pre-processing techniques must be applied to exclude unacceptable periods.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140869319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-29DOI: 10.1088/1361-6579/ad46df
L O Tapasco-Tapasco, C A Gonzalez-Correa, A Letourneur
Objective. Blood C-reactive protein (CRP) and the electrical bioimpedance spectroscopy (EBIS) variables phase angle (PhA) and impedance ratio (IR) have been proposed as biomarkers of metainflammation in overweight/obesity. CRP involves taking blood samples, while PhA and IR imply a less-than-2-minute-non-invasive procedure. In this study, values for these variables and percent body fat mass (PBFM) were obtained and compared before and immediately after a colon cleansing protocol (CCP), aimed at modulating intestinal microbiota and reducing metainflammation, as dysbiosis and the latter are intrinsically related, as well as along a period of 8 weeks after it.Approach. 20 female volunteers (20.9-24.9 years old) participated: 12 in an overweight group (OG), and 8 in a lean group (LG). TheOGwas divided in two subgroups (n= 6, each): control (CSG) and experimental (ESG). TheESGunderwent a 6-day CCP at week 2, while 5 volunteers in theCSGunderwent it at week 9.Main results.Pre/post-CCP mean values for the variables in theOGwere: PBFM (34.3/31.3%), CRP (3.7/0.6 mg dl-1), PhA (6.9/7.5°) and IR*10 (0.78/0.77). CalculatedR2correlation factors among these variables are all above 0.89. The favourable changes first seen in theESGwere still present 8 weeks after the CCP.Significance.(a) the CCP drastically lowers meta-inflammation, (b) EBIS can be used to measure metainflammation, before and after treatment, (c) for microbiota modulation, CCP could be a good alternative to more drastic procedures like faecal microbiota transplantation; (d) reestablishing eubiosis by CCP could be an effective coadjutant in the treatment of overweight young adult women.
{"title":"Phase angle and impedance ratio as meta-inflammation biomarkers after a colon cleansing protocol in a group of overweight young women.","authors":"L O Tapasco-Tapasco, C A Gonzalez-Correa, A Letourneur","doi":"10.1088/1361-6579/ad46df","DOIUrl":"10.1088/1361-6579/ad46df","url":null,"abstract":"<p><p><i>Objective</i>. Blood C-reactive protein (CRP) and the electrical bioimpedance spectroscopy (EBIS) variables phase angle (PhA) and impedance ratio (IR) have been proposed as biomarkers of metainflammation in overweight/obesity. CRP involves taking blood samples, while PhA and IR imply a less-than-2-minute-non-invasive procedure. In this study, values for these variables and percent body fat mass (PBFM) were obtained and compared before and immediately after a colon cleansing protocol (CCP), aimed at modulating intestinal microbiota and reducing metainflammation, as dysbiosis and the latter are intrinsically related, as well as along a period of 8 weeks after it.<i>Approach</i>. 20 female volunteers (20.9-24.9 years old) participated: 12 in an overweight group (<b>OG</b>), and 8 in a lean group (<b>LG</b>). The<b>OG</b>was divided in two subgroups (<i>n</i>= 6, each): control (<b>CSG</b>) and experimental (<b>ESG</b>). The<b>ESG</b>underwent a 6-day CCP at week 2, while 5 volunteers in the<b>CSG</b>underwent it at week 9.<i>Main results.</i>Pre/post-CCP mean values for the variables in the<b>OG</b>were: PBFM (34.3/31.3%), CRP (3.7/0.6 mg dl<sup>-1</sup>), PhA (6.9/7.5°) and IR*10 (0.78/0.77). Calculated<i>R</i><sup>2</sup>correlation factors among these variables are all above 0.89. The favourable changes first seen in the<b>ESG</b>were still present 8 weeks after the CCP.<i>Significance.</i>(a) the CCP drastically lowers meta-inflammation, (b) EBIS can be used to measure metainflammation, before and after treatment, (c) for microbiota modulation, CCP could be a good alternative to more drastic procedures like faecal microbiota transplantation; (d) reestablishing eubiosis by CCP could be an effective coadjutant in the treatment of overweight young adult women.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140860107","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-29DOI: 10.1088/1361-6579/ad4c35
Luca Cerina, Gabriele B Papini, Pedro Fonseca, Sebastiaan Overeem, Johannes P van Dijk, Fokke van Meulen, Rik Vullings
Objective.Intra-esophageal pressure (Pes) measurement is the recommended gold standard to quantify respiratory effort during sleep, but used to limited extent in clinical practice due to multiple practical drawbacks. Respiratory inductance plethysmography belts (RIP) in conjunction with oronasal airflow are the accepted substitute in polysomnographic systems (PSG) thanks to a better usability, although they are partial views on tidal volume and flow rather than true respiratory effort and are often used without calibration. In their place, the pressure variations measured non-invasively at the suprasternal notch (SSP) may provide a better measure of effort. However, this type of sensor has been validated only for respiratory events in the context of obstructive sleep apnea syndrome (OSA). We aim to provide an extensive verification of the suprasternal pressure signal against RIP belts and Pes, covering both normal breathing and respiratory events.Approach.We simultaneously acquired suprasternal (207) and esophageal pressure (20) signals along with RIP belts during a clinical PSG of 207 participants. In each signal, we detected breaths with a custom algorithm, and evaluated the SSP in terms of detection quality, breathing rate estimation, and similarity of breathing patterns against RIP and Pes. Additionally, we examined how the SSP signal may diverge from RIP and Pes in presence of respiratory events scored by a sleep technician.Main results.The SSP signal proved to be a reliable substitute for both esophageal pressure (Pes) and respiratory inductance plethysmography (RIP) in terms of breath detection, with sensitivity and positive predictive value exceeding 75%, and low error in breathing rate estimation. The SSP was also consistent with Pes (correlation of 0.72, similarity 80.8%) in patterns of increasing pressure amplitude that are common in OSA.Significance.This work provides a quantitative analysis of suprasternal pressure sensors for respiratory effort measurements.
{"title":"Quantitative validation of the suprasternal pressure signal to assess respiratory effort during sleep.","authors":"Luca Cerina, Gabriele B Papini, Pedro Fonseca, Sebastiaan Overeem, Johannes P van Dijk, Fokke van Meulen, Rik Vullings","doi":"10.1088/1361-6579/ad4c35","DOIUrl":"10.1088/1361-6579/ad4c35","url":null,"abstract":"<p><p><i>Objective.</i>Intra-esophageal pressure (Pes) measurement is the recommended gold standard to quantify respiratory effort during sleep, but used to limited extent in clinical practice due to multiple practical drawbacks. Respiratory inductance plethysmography belts (RIP) in conjunction with oronasal airflow are the accepted substitute in polysomnographic systems (PSG) thanks to a better usability, although they are partial views on tidal volume and flow rather than true respiratory effort and are often used without calibration. In their place, the pressure variations measured non-invasively at the suprasternal notch (SSP) may provide a better measure of effort. However, this type of sensor has been validated only for respiratory events in the context of obstructive sleep apnea syndrome (OSA). We aim to provide an extensive verification of the suprasternal pressure signal against RIP belts and Pes, covering both normal breathing and respiratory events.<i>Approach.</i>We simultaneously acquired suprasternal (207) and esophageal pressure (20) signals along with RIP belts during a clinical PSG of 207 participants. In each signal, we detected breaths with a custom algorithm, and evaluated the SSP in terms of detection quality, breathing rate estimation, and similarity of breathing patterns against RIP and Pes. Additionally, we examined how the SSP signal may diverge from RIP and Pes in presence of respiratory events scored by a sleep technician.<i>Main results.</i>The SSP signal proved to be a reliable substitute for both esophageal pressure (Pes) and respiratory inductance plethysmography (RIP) in terms of breath detection, with sensitivity and positive predictive value exceeding 75%, and low error in breathing rate estimation. The SSP was also consistent with Pes (correlation of 0.72, similarity 80.8%) in patterns of increasing pressure amplitude that are common in OSA.<i>Significance.</i>This work provides a quantitative analysis of suprasternal pressure sensors for respiratory effort measurements.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140945596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-28DOI: 10.1088/1361-6579/ad4c54
Gerardo Speroni, Patricia Antedoro, Silvia Marturet, Gabriela Martino, Celia Chavez, Cristian Hidalgo, María V Villacorta, Ivo Ahrtz, Manuel Casadei, Nora Fuentes, Peter Kremeier, Stephan H Böhm, Gerardo Tusman
Objective.Diagnosis of incipient acute hypovolemia is challenging as vital signs are typically normal and patients remain asymptomatic at early stages. The early identification of this entity would affect patients' outcome if physicians were able to treat it precociously. Thus, the development of a noninvasive, continuous bedside monitoring tool to detect occult hypovolemia before patients become hemodynamically unstable is clinically relevant. We hypothesize that pulse oximeter's alternant (AC) and continuous (DC) components of the infrared light are sensitive to acute and small changes in patient's volemia. We aimed to test this hypothesis in a cohort of healthy blood donors as a model of slight hypovolemia.Approach.We planned to prospectively study blood donor volunteers removing 450 ml of blood in supine position. Noninvasive arterial blood pressure, heart rate, and finger pulse oximetry were recorded. Data was analyzed before donation, after donation and during blood auto-transfusion generated by the passive leg-rising (PLR) maneuver.Main results.Sixty-six volunteers (44% women) accomplished the protocol successfully. No clinical symptoms of hypovolemia, arterial hypotension (systolic pressure < 90 mmHg), brady-tachycardia (heart rate <60 and >100 beats-per-minute) or hypoxemia (SpO2< 90%) were observed during donation. The AC signal before donation (median 0.21 and interquartile range 0.17 a.u.) increased after donation [0.26(0.19) a.u;p< 0.001]. The DC signal before donation [94.05(3.63) a.u] increased after blood extraction [94.65(3.49) a.u;p< 0.001]. When the legs' blood was auto-transfused during the PLR, the AC [0.21(0.13) a.u.;p= 0.54] and the DC [94.25(3.94) a.u.;p= 0.19] returned to pre-donation levels.Significance.The AC and DC components of finger pulse oximetry changed during blood donation in asymptomatic volunteers. The continuous monitoring of these signals could be helpful in detecting occult acute hypovolemia. New pulse oximeters should be developed combining the AC/DC signals with a functional hemodynamic monitoring of fluid responsiveness to define which patient needs fluid administration.
{"title":"Finger photopletysmography detects early acute blood loss in compensated blood donors: a pilot study.","authors":"Gerardo Speroni, Patricia Antedoro, Silvia Marturet, Gabriela Martino, Celia Chavez, Cristian Hidalgo, María V Villacorta, Ivo Ahrtz, Manuel Casadei, Nora Fuentes, Peter Kremeier, Stephan H Böhm, Gerardo Tusman","doi":"10.1088/1361-6579/ad4c54","DOIUrl":"10.1088/1361-6579/ad4c54","url":null,"abstract":"<p><p><i>Objective.</i>Diagnosis of incipient acute hypovolemia is challenging as vital signs are typically normal and patients remain asymptomatic at early stages. The early identification of this entity would affect patients' outcome if physicians were able to treat it precociously. Thus, the development of a noninvasive, continuous bedside monitoring tool to detect occult hypovolemia before patients become hemodynamically unstable is clinically relevant. We hypothesize that pulse oximeter's alternant (AC) and continuous (DC) components of the infrared light are sensitive to acute and small changes in patient's volemia. We aimed to test this hypothesis in a cohort of healthy blood donors as a model of slight hypovolemia.<i>Approach.</i>We planned to prospectively study blood donor volunteers removing 450 ml of blood in supine position. Noninvasive arterial blood pressure, heart rate, and finger pulse oximetry were recorded. Data was analyzed before donation, after donation and during blood auto-transfusion generated by the passive leg-rising (PLR) maneuver.<i>Main results.</i>Sixty-six volunteers (44% women) accomplished the protocol successfully. No clinical symptoms of hypovolemia, arterial hypotension (systolic pressure < 90 mmHg), brady-tachycardia (heart rate <60 and >100 beats-per-minute) or hypoxemia (SpO<sub>2</sub>< 90%) were observed during donation. The AC signal before donation (median 0.21 and interquartile range 0.17 a.u.) increased after donation [0.26(0.19) a.u;<i>p</i>< 0.001]. The DC signal before donation [94.05(3.63) a.u] increased after blood extraction [94.65(3.49) a.u;<i>p</i>< 0.001]. When the legs' blood was auto-transfused during the PLR, the AC [0.21(0.13) a.u.;<i>p</i>= 0.54] and the DC [94.25(3.94) a.u.;<i>p</i>= 0.19] returned to pre-donation levels.<i>Significance.</i>The AC and DC components of finger pulse oximetry changed during blood donation in asymptomatic volunteers. The continuous monitoring of these signals could be helpful in detecting occult acute hypovolemia. New pulse oximeters should be developed combining the AC/DC signals with a functional hemodynamic monitoring of fluid responsiveness to define which patient needs fluid administration.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140945616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-27DOI: 10.1088/1361-6579/ad4954
Kshama Kodthalu Shivashankara, Deepanshi, Afagh Mehri Shervedani, Gari D Clifford, Matthew A Reyna and Reza Sameni
Objective. Cardiovascular diseases are a major cause of mortality globally, and electrocardiograms (ECGs) are crucial for diagnosing them. Traditionally, ECGs are stored in printed formats. However, these printouts, even when scanned, are incompatible with advanced ECG diagnosis software that require time-series data. Digitizing ECG images is vital for training machine learning models in ECG diagnosis, leveraging the extensive global archives collected over decades. Deep learning models for image processing are promising in this regard, although the lack of clinical ECG archives with reference time-series data is challenging. Data augmentation techniques using realistic generative data models provide a solution. Approach. We introduce ECG-Image-Kit, an open-source toolbox for generating synthetic multi-lead ECG images with realistic artifacts from time-series data, aimed at automating the conversion of scanned ECG images to ECG data points. The tool synthesizes ECG images from real time-series data, applying distortions like text artifacts, wrinkles, and creases on a standard ECG paper background. Main results. As a case study, we used ECG-Image-Kit to create a dataset of 21 801 ECG images from the PhysioNet QT database. We developed and trained a combination of a traditional computer vision and deep neural network model on this dataset to convert synthetic images into time-series data for evaluation. We assessed digitization quality by calculating the signal-to-noise ratio and compared clinical parameters like QRS width, RR, and QT intervals recovered from this pipeline, with the ground truth extracted from ECG time-series. The results show that this deep learning pipeline accurately digitizes paper ECGs, maintaining clinical parameters, and highlights a generative approach to digitization. Significance. The toolbox has broad applications, including model development for ECG image digitization and classification. The toolbox currently supports data augmentation for the 2024 PhysioNet Challenge, focusing on digitizing and classifying paper ECG images.
{"title":"ECG-Image-Kit: a synthetic image generation toolbox to facilitate deep learning-based electrocardiogram digitization","authors":"Kshama Kodthalu Shivashankara, Deepanshi, Afagh Mehri Shervedani, Gari D Clifford, Matthew A Reyna and Reza Sameni","doi":"10.1088/1361-6579/ad4954","DOIUrl":"https://doi.org/10.1088/1361-6579/ad4954","url":null,"abstract":"Objective. Cardiovascular diseases are a major cause of mortality globally, and electrocardiograms (ECGs) are crucial for diagnosing them. Traditionally, ECGs are stored in printed formats. However, these printouts, even when scanned, are incompatible with advanced ECG diagnosis software that require time-series data. Digitizing ECG images is vital for training machine learning models in ECG diagnosis, leveraging the extensive global archives collected over decades. Deep learning models for image processing are promising in this regard, although the lack of clinical ECG archives with reference time-series data is challenging. Data augmentation techniques using realistic generative data models provide a solution. Approach. We introduce ECG-Image-Kit, an open-source toolbox for generating synthetic multi-lead ECG images with realistic artifacts from time-series data, aimed at automating the conversion of scanned ECG images to ECG data points. The tool synthesizes ECG images from real time-series data, applying distortions like text artifacts, wrinkles, and creases on a standard ECG paper background. Main results. As a case study, we used ECG-Image-Kit to create a dataset of 21 801 ECG images from the PhysioNet QT database. We developed and trained a combination of a traditional computer vision and deep neural network model on this dataset to convert synthetic images into time-series data for evaluation. We assessed digitization quality by calculating the signal-to-noise ratio and compared clinical parameters like QRS width, RR, and QT intervals recovered from this pipeline, with the ground truth extracted from ECG time-series. The results show that this deep learning pipeline accurately digitizes paper ECGs, maintaining clinical parameters, and highlights a generative approach to digitization. Significance. The toolbox has broad applications, including model development for ECG image digitization and classification. The toolbox currently supports data augmentation for the 2024 PhysioNet Challenge, focusing on digitizing and classifying paper ECG images.","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":"29 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141169224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective.Myocardial infarction (MI) is one of the most threatening cardiovascular diseases. This paper aims to explore a method for using an algorithm to autonomously classify MI based on the electrocardiogram (ECG).Approach.A detection method of MI that fuses continuous T-wave area (C_TWA) feature and ECG deep features is proposed. This method consists of three main parts: (1) The onset of MI is often accompanied by changes in the shape of the T-wave in the ECG, thus the area of the T-wave displayed on different heartbeats will be quite different. The adaptive sliding window method is used to detect the start and end of the T-wave, and calculate the C_TWA on the same ECG record. Additionally, the coefficient of variation of C_TWA is defined as the C_TWA feature of the ECG. (2) The multi lead fusion convolutional neural network was implemented to extract the deep features of the ECG. (3) The C_TWA feature and deep features of the ECG were fused by soft attention, and then inputted into the multi-layer perceptron to obtain the detection result.Main results.According to the inter-patient paradigm, the proposed method reached a 97.67% accuracy, 96.59% precision, and 98.96% recall on the PTB dataset, as well as reached 93.15% accuracy, 93.20% precision, and 95.14% recall on the clinical dataset.Significance.This method accurately extracts the feature of the C_TWA, and combines the deep features of the signal, thereby improving the detection accuracy and achieving favorable results on clinical datasets.
目的:心肌梗塞(MI)是威胁最大的心血管疾病之一。本文旨在探索一种基于心电图(ECG)的自主心肌梗死分类算法:方法:本文提出了一种融合连续 T 波区域(C_TWA)特征和心电图深度特征的心肌梗死检测方法。该方法主要由三部分组成:(1)心肌梗死的发生往往伴随着心电图中 T 波形状的变化,因此不同心搏所显示的 T 波区域会有很大差异。自适应滑动窗口法用于检测 T 波的起始和终止,并计算同一心电图记录上的 C_TWA。此外,C_TWA 的变异系数 (CV) 被定义为心电图的 C_TWA 特征。(2) 采用多导联融合卷积神经网络(Multi-lead-fusion CNN)提取心电图的深层特征。(3) 通过软关注融合心电图的 C_TWA 特征和深层特征,然后输入多层感知器,得到检测结果:根据患者间范例,提出的方法在 PTB 数据集上达到了 97.67% 的准确率、96.59% 的精确率和 98.96% 的召回率,而提出的方法在临床数据集上达到了 93.15% 的准确率、93.20% 的精确率和 95.14% 的召回率:意义:所提出的方法准确提取了C_TWA的特征,并结合了信号的深层特征,从而提高了检测精度,在临床数据集上取得了理想的效果。
{"title":"Myocardial infarction detection method based on the continuous T-wave area feature and multi-lead-fusion deep features.","authors":"Mingfeng Jiang, Feibiao Bian, Jucheng Zhang, Tianhai Huang, Ling Xia, Yonghua Chu, Zhikang Wang, Jun Jiang","doi":"10.1088/1361-6579/ad46e1","DOIUrl":"10.1088/1361-6579/ad46e1","url":null,"abstract":"<p><p><i>Objective.</i>Myocardial infarction (MI) is one of the most threatening cardiovascular diseases. This paper aims to explore a method for using an algorithm to autonomously classify MI based on the electrocardiogram (ECG).<i>Approach.</i>A detection method of MI that fuses continuous T-wave area (C_TWA) feature and ECG deep features is proposed. This method consists of three main parts: (1) The onset of MI is often accompanied by changes in the shape of the T-wave in the ECG, thus the area of the T-wave displayed on different heartbeats will be quite different. The adaptive sliding window method is used to detect the start and end of the T-wave, and calculate the C_TWA on the same ECG record. Additionally, the coefficient of variation of C_TWA is defined as the C_TWA feature of the ECG. (2) The multi lead fusion convolutional neural network was implemented to extract the deep features of the ECG. (3) The C_TWA feature and deep features of the ECG were fused by soft attention, and then inputted into the multi-layer perceptron to obtain the detection result.<i>Main results.</i>According to the inter-patient paradigm, the proposed method reached a 97.67% accuracy, 96.59% precision, and 98.96% recall on the PTB dataset, as well as reached 93.15% accuracy, 93.20% precision, and 95.14% recall on the clinical dataset.<i>Significance.</i>This method accurately extracts the feature of the C_TWA, and combines the deep features of the signal, thereby improving the detection accuracy and achieving favorable results on clinical datasets.</p>","PeriodicalId":20047,"journal":{"name":"Physiological measurement","volume":" ","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140858460","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}