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Discriminating extra virgin olive oils from common edible oils: Comparable performance of PLS-DA models trained on low-field and high-field 1H NMR data. 区分特级初榨橄榄油和普通食用油:在低场和高场 1H NMR 数据上训练的 PLS-DA 模型性能相当。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-03-23 DOI: 10.1002/pca.3348
Thomas Head, Ryland T Giebelhaus, Seo Lin Nam, A Paulina de la Mata, James J Harynuk, Paul R Shipley

Introduction: Olive oil, derived from the olive tree (Olea europaea L.), is used in cooking, cosmetics, and soap production. Due to its high value, some producers adulterate olive oil with cheaper edible oils or fraudulently mislabel oils as olive to increase profitability. Adulterated products can cause allergic reactions in sensitive individuals and can lack compounds which contribute to the perceived health benefits of olive oil, and its corresponding premium price.

Objective: There is a need for robust methods to rapidly authenticate olive oils. By utilising machine learning models trained on the nuclear magnetic resonance (NMR) spectra of known olive oil and edible oils, samples can be classified as olive and authenticated. While high-field NMRs are commonly used for their superior resolution and sensitivity, they are generally prohibitively expensive to purchase and operate for routine screening purposes. Low-field benchtop NMR presents an affordable alternative.

Methods: We compared the predictive performance of partial least squares discrimination analysis (PLS-DA) models trained on low-field 60 MHz benchtop proton (1H) NMR and high-field 400 MHz 1H NMR spectra. The data were acquired from a sample set consisting of 49 extra virgin olive oils (EVOOs) and 45 other edible oils.

Results: We demonstrate that PLS-DA models trained on low-field NMR spectra are highly predictive when classifying EVOOs from other oils and perform comparably to those trained on high-field spectra. We demonstrated that variance was primarily driven by regions of the spectra arising from olefinic protons and ester protons from unsaturated fatty acids in models derived from data at both field strengths.

简介:橄榄油提取自橄榄树(Olea europaea L.),用于烹饪、化妆品和肥皂生产。由于其价值较高,一些生产商在橄榄油中掺入廉价食用油,或将橄榄油误标为橄榄油以提高利润。掺假产品会引起敏感人群的过敏反应,而且可能缺少有助于人们认识到橄榄油对健康的益处以及相应溢价的化合物:目标:需要一种可靠的方法来快速鉴定橄榄油的真伪。通过利用在已知橄榄油和食用油的核磁共振 (NMR) 光谱上训练的机器学习模型,可以将样本归类为橄榄油并进行鉴定。虽然高场核磁共振因其卓越的分辨率和灵敏度而被广泛使用,但其购买和操作成本通常过高,难以满足常规筛选的目的。低场台式 NMR 是一种经济实惠的替代方法:我们比较了在低场 60 MHz 台式质子 (1H) NMR 和高场 400 MHz 1H NMR 光谱上训练的偏最小二乘判别分析 (PLS-DA) 模型的预测性能。这些数据来自一个样品集,其中包括 49 种特级初榨橄榄油(EVOO)和 45 种其他食用油:结果:我们证明了在低场 NMR 光谱上训练的 PLS-DA 模型在从其他油类中对 EVOO 进行分类时具有很高的预测性,其性能与在高场光谱上训练的模型相当。我们证明,在由两种场强下的数据推导出的模型中,差异主要是由光谱中的烯烃质子和不饱和脂肪酸的酯质子区域引起的。
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引用次数: 0
Metabolic and elemental profiling as potential discriminating features among the black mahlab seeds (Monechma ciliatum) grown in three different regions. 代谢和元素分析是三个不同地区种植的黑麻布种子(Monechma ciliatum)的潜在鉴别特征。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-03-03 DOI: 10.1002/pca.3341
Abdalbasit Adam Mariod, Haroon Elrasheid Tahir

Introduction: Black mahlab (Monechma ciliatum) seed is a rich source of metabolites and minerals and is usually believed to have a similar composition between different areas of cultivation. Until now, no studies have assessed changes in black mahlab seeds (BMSs) to determine those constituents that help to discriminate them according to geographical origin.

Objectives: The present study attempted to compare the metabolomics and elemental profiles of BMSs of different geographical origins and identified the potential markers using ultrahigh-performance liquid chromatography quadrupole Orbitrap tandem mass spectrometry (UHPLC-Q-Orbitrap-MS2), and inductively coupled plasma mass spectrometry (ICP-MS) techniques and established the chemometric model to identify the potential markers and discriminate them according to cultivation sites.

Material and methods: In this work, data from metabolites analysis by UHPLC-Q-Orbitrap-MS2 and multi-elemental data obtained from ICP-MS were combined with chemometrics for tracing the geographical origin of BMSs. Principal component analysis (PCA) was used to evaluate the overall grouping of samples. In contrast, partial least squares-discriminant analysis (PLS-DA) and orthogonal partial least squares discriminant analysis (OPLS-DA) were employed for authentication.

Results: PLS-DA and OPLS-DA models were fully validated (R2Y and Q2 values > 0.5). Variable importance of various projections was applied to obtain valuable data about differential elements (seven markers were identified) and metabolites (23 markers were identified) with high discrimination potential. The outcomes presented in this study serve as an appropriate framework for developing novel discrimination approaches in food origin screening.

简介:黑麻布(Monechma ciliatum)种子是代谢物和矿物质的丰富来源,通常认为不同种植地区的黑麻布种子具有相似的成分。到目前为止,还没有研究评估过黑木耳种子(BMSs)的变化,以确定哪些成分有助于根据地理来源区分它们:本研究尝试使用超高效液相色谱四极杆 Orbitrap 串联质谱(UHPLC-Q-Orbitrap-MS2)和电感耦合等离子体质谱(ICP-MS)技术,比较不同地理产地的黑麻布籽的代谢组学和元素图谱,并建立化学计量学模型,以确定潜在的标记物,并根据种植地点对其进行区分:本研究将 UHPLC-Q-Orbitrap-MS2 的代谢物分析数据和 ICP-MS 的多元素分析数据与化学计量学相结合,用于追溯 BMSs 的地理来源。主成分分析(PCA)用于评估样品的总体分组情况。而偏最小二乘判别分析(PLS-DA)和正交偏最小二乘判别分析(OPLS-DA)则用于鉴定:结果:PLS-DA 和 OPLS-DA 模型得到了充分验证(R2 Y 和 Q2 值大于 0.5)。应用各种预测的可变重要性,获得了具有高鉴别潜力的差异元素(确定了 7 个标记)和代谢物(确定了 23 个标记)的宝贵数据。本研究的结果可作为在食品来源筛选中开发新型鉴别方法的适当框架。
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引用次数: 0
"UHPLC-Q-TOF/MS-chemometrics-network pharmacology" integrated strategy to discover quality markers of raw and stir-fried Fructus Tribuli and process optimization of stir-fried Fructus Tribuli. 采用 "UHPLC-Q-TOF/MS-化学计量学-网络药理学 "综合策略,发现生炒蒺藜的质量指标并优化炒蒺藜的工艺。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-03-15 DOI: 10.1002/pca.3339
Shuai Wang, De-Feng Du, Fei Li, Ming-Yue Chen, Hua-Gang Sheng, Chao Zhang, Fei Guo, Zhi Chen, Guang-Shang Cao

Introduction: Fructus Tribuli, the dried ripe fruit of Tribulus terrestris L., has various beneficial effects, including liver-calming and depression-relieving effects. Raw Fructus Tribuli (RFT) and stir-fried Fructus Tribuli (SFT) are included in the Chinese Pharmacopoeia 2020 edition (Ch. P 2020). However, owing to the lack of specific regulations on SFT-processing parameters in Ch. P 2020, it is difficult to ensure the quality of commercially available SFT.

Objective: The present study aimed to screen the quality markers (Q-markers) of RFT and SFT and optimize the processing technology of SFT based on the identified Q-markers.

Methods: First, the ultra-high-performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry (UHPLC-Q-TOF/MS) technology as well as multiple statistical analysis along with network pharmacology was used to comprehensively identify the Q-markers of RFT and SFT. Then, based on single-factor experiments, the Box-Behnken design (BBD) response surface methodology (RSM) was used to optimize the processing technology of SFT and perform process validation.

Results: A total of 63 components were identified in RFT and SFT extracts. Terrestrosin D and Terrestrosin K were initially considered the Q-markers of RFT and SFT, respectively. The optimum processing technology conditions were 208°C, 14 min, and 60 r·min-1. Three batches of process validation were performed, and the mean composite score was 56.87, with a relative standard deviation (RSD) value of 1.13%.

Conclusion: The content of steroidal saponin components in RFT was significantly different before and after stir-frying. Terrestrosin D and Terrestrosin K were validated as the Q-markers of RFT and SFT, respectively. The identification of Q-markers for RFT and SFT offered a clear index for optimizing the SFT-processing technology and provided a basis for the quality control of RFT and SFT decoction pieces.

导言:蒺藜是刺蒺藜的干燥成熟果实,具有平肝解郁等多种功效。生蒺藜和炒蒺藜被收载于《中国药典》2020年版(Ch. P 2020)。然而,由于《中国药典》2020 年版缺乏对炒货加工参数的具体规定,市售炒货的质量难以保证:本研究旨在筛选红曲霉和黑曲霉的质量标记(Q-markers),并根据所确定的 Q-markers优化黑曲霉的加工技术:方法:首先,采用超高效液相色谱-四极杆飞行时间质谱(UHPLC-Q-TOF/MS)技术以及多重统计分析和网络药理学方法,全面鉴定了软胶囊和软胶囊的Q标志物。然后,在单因素实验的基础上,采用方框-贝肯设计(BBD)响应面方法(RSM)优化 SFT 的加工工艺并进行工艺验证:结果:在 RFT 和 SFT 提取物中共鉴定出 63 种成分。Terrestrosin D 和 Terrestrosin K 最初分别被认为是 RFT 和 SFT 的 Q 标记。最佳加工技术条件为 208°C、14 分钟和 60 r-min-1。进行了三批工艺验证,平均综合评分为 56.87,相对标准偏差(RSD)值为 1.13%:结论:炒制前后,RFT 中甾体皂苷成分的含量有显著差异。Terrestrosin D 和 Terrestrosin K 分别被确认为 RFT 和 SFT 的 Q 标记。红花苷和黄花苷 Q 标记的确定为优化黄花苷加工技术提供了明确的指标,也为红花苷和黄花苷煎剂的质量控制提供了依据。
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引用次数: 0
Simultaneous separation and determination of seven biphenyl cyclooctene lignans in Schisandra chinensis and its preparations by micellar electrokinetic chromatography with dual organic solvent system. 双有机溶剂系统胶束电动色谱法同时分离和测定五味子及其制剂中的七种联苯环辛烯木脂素。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-04-01 DOI: 10.1002/pca.3349
Meiyi Wang, Junzhao Ren, Guangbin Zhang, Hongfen Zhang, Ruimiao Chang, Haixia Yu, Anjia Chen

Introduction: Gomisin is a natural dibenzo cyclooctene lignan, which is mainly derived from the family Magnoliaceae. It has anti-inflammatory, antioxidant, anti-tumor, anti-aging, and hypoglycemic effects. Gomisins play important roles as medicines, nutraceuticals, food additives, and cosmetics.

Objective: The objective of this study is to establish a micellar electrokinetic chromatography (MEKC) method for simultaneous separation and determination of seven biphenyl cyclooctene lignans (Gomisin D, E, G, H, J, N, and O) in Schisandra chinensis and its preparations.

Methods: The method was optimized by studying the effects of the main parameters on the separation. The method has been validated and successfully applied to the determination of seven Gomisins in S. chinensis and its preparations.

Results: In the separation system, the running buffer was composed of 20 mM Na2HPO4, 8.0 mM sodium dodecyl sulfate (SDS), 11% (v/v) methanol, and 6.0% (v/v) ethanol. A diode array detector was used with a detection wavelength of 230 nm, a separation voltage of 17 kV, and an operating temperature of 25°C. Under this condition, the seven analytes were separated at baseline within 20 min, and a good linear relationship was obtained with correlation coefficient ranging from 0.9919 to 0.9992. The limit of detection (LOD, S/N = 3) and the limit of quantification (LOQ, S/N = 10) ranged from 0.8 to 0.9 μg/mL and from 2.6 to 3.0 μg/mL, respectively. The recovery rate was between 99.1% and 102.5%.

Conclusion: The experimental results indicated that this method is suitable for the separation and determination of seven Schisandra biphenyl cyclooctene lignan compounds in real samples. At the same time, it provides an effective reference for the quality control of S. chinensis and its preparations.

简介木犀草素是一种天然二苯并环辛烯木脂素,主要来源于木兰科植物。它具有抗炎、抗氧化、抗肿瘤、抗衰老和降血糖等作用。五味子苷作为药物、营养保健品、食品添加剂和化妆品发挥着重要作用:本研究旨在建立一种胶束电动色谱(MEKC)方法,用于同时分离和测定五味子及其制剂中的七种联苯环辛烯木脂素(五味子素 D、E、G、H、J、N 和 O):通过研究主要参数对分离的影响,对该方法进行了优化。方法:通过研究主要参数对分离的影响,对该方法进行了优化,并将其成功应用于五味子及其制剂中七种五味子苷的测定:在分离系统中,缓冲液为20 mM Na2HPO4、8.0 mM十二烷基硫酸钠(SDS)、11%(v/v)甲醇和6.0%(v/v)乙醇。二极管阵列检测器的检测波长为 230 nm,分离电压为 17 kV,工作温度为 25°C。在此条件下,七种分析物在 20 分钟内实现基线分离,线性关系良好,相关系数为 0.9919 至 0.9992。检出限(LOD,S/N = 3)和定量限(LOQ,S/N = 10)分别为 0.8 至 0.9 μg/mL 和 2.6 至 3.0 μg/mL。回收率为 99.1%至 102.5%:实验结果表明该方法适用于实际样品中7种五味子联苯环辛烯木质素化合物的分离测定。实验结果表明该方法适用于实际样品中七种五味子联苯环辛烯木质素化合物的分离和测定,同时为五味子及其制剂的质量控制提供了有效的参考依据。
{"title":"Simultaneous separation and determination of seven biphenyl cyclooctene lignans in Schisandra chinensis and its preparations by micellar electrokinetic chromatography with dual organic solvent system.","authors":"Meiyi Wang, Junzhao Ren, Guangbin Zhang, Hongfen Zhang, Ruimiao Chang, Haixia Yu, Anjia Chen","doi":"10.1002/pca.3349","DOIUrl":"10.1002/pca.3349","url":null,"abstract":"<p><strong>Introduction: </strong>Gomisin is a natural dibenzo cyclooctene lignan, which is mainly derived from the family Magnoliaceae. It has anti-inflammatory, antioxidant, anti-tumor, anti-aging, and hypoglycemic effects. Gomisins play important roles as medicines, nutraceuticals, food additives, and cosmetics.</p><p><strong>Objective: </strong>The objective of this study is to establish a micellar electrokinetic chromatography (MEKC) method for simultaneous separation and determination of seven biphenyl cyclooctene lignans (Gomisin D, E, G, H, J, N, and O) in Schisandra chinensis and its preparations.</p><p><strong>Methods: </strong>The method was optimized by studying the effects of the main parameters on the separation. The method has been validated and successfully applied to the determination of seven Gomisins in S. chinensis and its preparations.</p><p><strong>Results: </strong>In the separation system, the running buffer was composed of 20 mM Na<sub>2</sub>HPO<sub>4</sub>, 8.0 mM sodium dodecyl sulfate (SDS), 11% (v/v) methanol, and 6.0% (v/v) ethanol. A diode array detector was used with a detection wavelength of 230 nm, a separation voltage of 17 kV, and an operating temperature of 25°C. Under this condition, the seven analytes were separated at baseline within 20 min, and a good linear relationship was obtained with correlation coefficient ranging from 0.9919 to 0.9992. The limit of detection (LOD, S/N = 3) and the limit of quantification (LOQ, S/N = 10) ranged from 0.8 to 0.9 μg/mL and from 2.6 to 3.0 μg/mL, respectively. The recovery rate was between 99.1% and 102.5%.</p><p><strong>Conclusion: </strong>The experimental results indicated that this method is suitable for the separation and determination of seven Schisandra biphenyl cyclooctene lignan compounds in real samples. At the same time, it provides an effective reference for the quality control of S. chinensis and its preparations.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140336540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Thrombin-targeted screening of anticoagulant active components from Polygonum amplexicaule D. Don var. sinense Forb by affinity ultrafiltration coupled with UPLC-Q-TOF-MS. 通过亲和超滤与 UPLC-Q-TOF-MS 联用技术,以凝血酶为靶标筛选安氏何首乌中的抗凝血活性成分。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-03-18 DOI: 10.1002/pca.3346
Shiyi Huang, Xiangchang He, Chencun Huang, Weihe He, Hongqing Zhao, Jie Dai, Guangming Xu

Introduction: Polygonum amplexicaule D. Don var. sinense Forb (PAF), a medicinal plant, has the effect of promoting blood circulation and removing blood stasis. However, the active compounds and targets of its anticoagulant effect are still unclear.

Objectives: This study aims to establish an effective reversely thrombin-targeted screening method for anticoagulant active components in PAF by affinity ultrafiltration (AUF) coupled with ultrahigh-performance liquid chromatography-quadrupole time-of-flight mass spectroscopy (UPLC-Q-TOF-MS).

Methods: Different polar parts of PAF were screened for potential thrombin ligands by AUF-HPLC and identified by UPLC-Q-TOF-MS. After studying the affinity between ligands and thrombin by molecular docking, the antithrombotic activity of ligands was detected in vivo by zebrafish thrombus model, and in vitro by chromogenic substrate method. The mechanism of such ligands on thrombin was further studied by coagulation factor assay.

Results: Eleven potential thrombin ligands from PAF were screened by the AUF-UPLC-Q-TOF-MS method, and two compounds (butyl gallate and β-sitosterol) with significant anticoagulant activity were discovered via in vitro and in vivo activity testing.

Conclusion: A method system based on AUF-UPLC-Q-TOF-MS, molecular docking and in vivo and in vitro experiments also provided a powerful tool for further exploration of anticoagulant active components in PAF.

简介Polygonum amplexicaule D. Don var. sinense Forb(PAF)是一种药用植物,具有活血化瘀的功效。然而,其抗凝血作用的活性化合物和靶点尚不清楚:本研究旨在通过亲和超滤(AUF)结合超高效液相色谱-四极杆飞行时间质谱(UPLC-Q-TOF-MS)建立一种有效的反向凝血酶靶向筛选 PAF 中抗凝血活性成分的方法:方法:用 AUF-HPLC 筛选 PAF 的不同极性部分,并用 UPLC-Q-TOF-MS 鉴定潜在的凝血酶配体。通过分子对接研究了配体与凝血酶的亲和力,并利用斑马鱼血栓模型和显色底物法检测了配体在体内和体外的抗血栓活性。通过凝血因子测定进一步研究了这些配体对凝血酶的作用机制:结果:利用 AUF-UPLC-Q-TOF-MS 方法从 PAF 中筛选出 11 种潜在的凝血酶配体,并通过体外和体内活性测试发现了两种具有显著抗凝活性的化合物(没食子酸丁酯和β-谷甾醇):结论:基于 AUF-UPLC-Q-TOF-MS、分子对接和体内外实验的方法体系也为进一步探索 PAF 中的抗凝活性成分提供了有力的工具。
{"title":"Thrombin-targeted screening of anticoagulant active components from Polygonum amplexicaule D. Don var. sinense Forb by affinity ultrafiltration coupled with UPLC-Q-TOF-MS.","authors":"Shiyi Huang, Xiangchang He, Chencun Huang, Weihe He, Hongqing Zhao, Jie Dai, Guangming Xu","doi":"10.1002/pca.3346","DOIUrl":"10.1002/pca.3346","url":null,"abstract":"<p><strong>Introduction: </strong>Polygonum amplexicaule D. Don var. sinense Forb (PAF), a medicinal plant, has the effect of promoting blood circulation and removing blood stasis. However, the active compounds and targets of its anticoagulant effect are still unclear.</p><p><strong>Objectives: </strong>This study aims to establish an effective reversely thrombin-targeted screening method for anticoagulant active components in PAF by affinity ultrafiltration (AUF) coupled with ultrahigh-performance liquid chromatography-quadrupole time-of-flight mass spectroscopy (UPLC-Q-TOF-MS).</p><p><strong>Methods: </strong>Different polar parts of PAF were screened for potential thrombin ligands by AUF-HPLC and identified by UPLC-Q-TOF-MS. After studying the affinity between ligands and thrombin by molecular docking, the antithrombotic activity of ligands was detected in vivo by zebrafish thrombus model, and in vitro by chromogenic substrate method. The mechanism of such ligands on thrombin was further studied by coagulation factor assay.</p><p><strong>Results: </strong>Eleven potential thrombin ligands from PAF were screened by the AUF-UPLC-Q-TOF-MS method, and two compounds (butyl gallate and β-sitosterol) with significant anticoagulant activity were discovered via in vitro and in vivo activity testing.</p><p><strong>Conclusion: </strong>A method system based on AUF-UPLC-Q-TOF-MS, molecular docking and in vivo and in vitro experiments also provided a powerful tool for further exploration of anticoagulant active components in PAF.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140158756","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chemometric-based drug discovery approaches from natural origins using hyphenated chromatographic techniques. 利用联用色谱技术,从天然来源中发现基于化学计量学的药物。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-05-28 DOI: 10.1002/pca.3382
Marjan Mahboubifar, Christian Zidorn, Mohamed A Farag, Ahmed Zayed, Amir Reza Jassbi

Introduction: Isolation and characterization of bioactive components from complex matrices of marine or terrestrial biological origins are the most challenging issues for natural product chemists. Biochemometric is a new potential scope in natural product analytical science, and it is a methodology to find the compound's correlation to their bioactivity with the help of hyphenated chromatographic techniques and chemometric tools.

Objectives: The present review aims to evaluate the application of chemometric tools coupled to chromatographic techniques for drug discovery from natural resources.

Methods: The searching keywords "biochemometric," "chemometric," "chromatography," "natural products bioassay," and "bioassay" were selected to search the published articles between 2010-2023 using different search engines including "Pubmed", "Web of Science," "ScienceDirect," and "Google scholar."

Results: An initial stage in natural product analysis is applying the chromatographic hyphenated techniques in conjunction with biochemometric approaches. Among the applied chromatographic techniques, liquid chromatography (LC) techniques, have taken up more than half (53%) and also, mass spectroscopy (MS)-based chromatographic techniques such as LC-MS are the most widely used techniques applied in combination with chemometric methods for natural products bioassay. Considering the complexity of dataset achieved from chromatographic hyphenated techniques, chemometric tools have been increasingly employed for phytochemical studies in the context of determining botanicals geographical origin, quality control, and detection of bioactive compounds.

Conclusion: Biochemometric application is expected to be further improved with advancing in data acquisition methods, new efficient preprocessing, model validation and variable selection methods which would guarantee that the applied model to have good prediction ability in compound relation to its bioactivity.

简介:从海洋或陆地生物来源的复杂基质中分离和表征生物活性成分是天然产物化学家面临的最具挑战性的问题。生物化学计量学是天然产物分析科学的一个新的潜在领域,它是一种在色谱技术和化学计量学工具的帮助下寻找化合物与其生物活性相关性的方法:本综述旨在评估化学计量学工具与色谱技术相结合在从自然资源中发现药物方面的应用:以 "生物化学计量学"、"化学计量学"、"色谱法"、"天然产物生物分析 "和 "生物分析 "为检索关键词,使用 "Pubmed"、"Web of Science"、"ScienceDirect "和 "Google scholar "等不同搜索引擎检索2010-2023年间发表的文章:天然产物分析的初始阶段是将色谱联用技术与生物化学计量学方法相结合。在应用的色谱技术中,液相色谱(LC)技术占了一半以上(53%),此外,基于质谱(MS)的色谱技术(如 LC-MS)也是天然产物生物分析中结合化学计量学方法应用最广泛的技术。考虑到色谱联用技术所获得数据集的复杂性,化学计量学工具已越来越多地用于植物化学研究,以确定植物药的地理来源、质量控制和生物活性化合物的检测:随着数据采集方法、新的高效预处理方法、模型验证和变量选择方法的不断进步,生物化学计量学的应用有望得到进一步改善,从而保证应用模型在化合物的生物活性方面具有良好的预测能力。
{"title":"Chemometric-based drug discovery approaches from natural origins using hyphenated chromatographic techniques.","authors":"Marjan Mahboubifar, Christian Zidorn, Mohamed A Farag, Ahmed Zayed, Amir Reza Jassbi","doi":"10.1002/pca.3382","DOIUrl":"10.1002/pca.3382","url":null,"abstract":"<p><strong>Introduction: </strong>Isolation and characterization of bioactive components from complex matrices of marine or terrestrial biological origins are the most challenging issues for natural product chemists. Biochemometric is a new potential scope in natural product analytical science, and it is a methodology to find the compound's correlation to their bioactivity with the help of hyphenated chromatographic techniques and chemometric tools.</p><p><strong>Objectives: </strong>The present review aims to evaluate the application of chemometric tools coupled to chromatographic techniques for drug discovery from natural resources.</p><p><strong>Methods: </strong>The searching keywords \"biochemometric,\" \"chemometric,\" \"chromatography,\" \"natural products bioassay,\" and \"bioassay\" were selected to search the published articles between 2010-2023 using different search engines including \"Pubmed\", \"Web of Science,\" \"ScienceDirect,\" and \"Google scholar.\"</p><p><strong>Results: </strong>An initial stage in natural product analysis is applying the chromatographic hyphenated techniques in conjunction with biochemometric approaches. Among the applied chromatographic techniques, liquid chromatography (LC) techniques, have taken up more than half (53%) and also, mass spectroscopy (MS)-based chromatographic techniques such as LC-MS are the most widely used techniques applied in combination with chemometric methods for natural products bioassay. Considering the complexity of dataset achieved from chromatographic hyphenated techniques, chemometric tools have been increasingly employed for phytochemical studies in the context of determining botanicals geographical origin, quality control, and detection of bioactive compounds.</p><p><strong>Conclusion: </strong>Biochemometric application is expected to be further improved with advancing in data acquisition methods, new efficient preprocessing, model validation and variable selection methods which would guarantee that the applied model to have good prediction ability in compound relation to its bioactivity.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141162446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Progress in the analysis of phytocannabinoids by HPLC and UPLC (or UHPLC) during 2020-2023. 2020-2023 年期间采用 HPLC 和 UPLC(或 UHPLC)分析植物大麻素的进展情况。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-06-04 DOI: 10.1002/pca.3374
Lutfun Nahar, Phanuphong Chaiwut, Sarita Sangthong, Tinnakorn Theansungnoen, Satyajit D Sarker

Introduction: Organic molecules that bind to cannabinoid receptors are known as cannabinoids. These molecules possess pharmacological properties similar to those produced by Cannabis sativa L. High-performance liquid chromatography (HPLC) and ultra-performance liquid chromatography (UPLC, also known as ultra-high-performance liquid chromatography, UHPLC) have become the most widely used analytical tools for detection and quantification of phytocannabinoids in various matrices. HPLC and UPLC (or UHPLC) are usually coupled to an ultraviolet (UV), photodiode array (PDA), or mass spectrometric (MS) detector.

Objective: To critically appraise the literature on the application of HPLC and UPLC (or UHPLC) methods for the analysis of phytocannabinoids published from January 2020 to December 2023.

Methodology: An extensive literature search was conducted using Web of Science, PubMed, and Google Scholar and published materials including relevant books. In various combinations, using cannabinoid in all combinations, cannabis, hemp, hashish, C. sativa, marijuana, analysis, HPLC, UHPLC, UPLC, and quantitative, qualitative, and quality control were used as the keywords for the literature search.

Results: Several HPLC- and UPLC (or UHPLC)-based methods for the analysis of phytocannabinoids were reported. While simple HPLC-UV or HPLC-PDA-based methods were common, the use of HPLC-MS, HPLC-MS/MS, UPLC (or UHPLC)-PDA, UPLC (or UHPLC)-MS, and UPLC (or UHPLC)-MS/MS was also reported. Applications of mathematical and computational models for optimization of protocols were noted. Pre-analyses included various environmentally friendly extraction protocols.

Conclusion: During the last 4 years, HPLC and UPLC (or UHPLC) remained the main analytical tools for phytocannabinoid analysis in different matrices.

简介:与大麻素受体结合的有机分子被称为大麻素。高效液相色谱法(HPLC)和超高效液相色谱法(UPLC,又称超高效液相色谱法,UHPLC)已成为检测和定量各种基质中植物大麻素的最广泛使用的分析工具。HPLC 和 UPLC(或 UHPLC)通常与紫外(UV)、光电二极管阵列(PDA)或质谱(MS)检测器联用:对 2020 年 1 月至 2023 年 12 月期间发表的有关应用 HPLC 和 UPLC(或 UHPLC)方法分析植物大麻素的文献进行批判性评估:利用 Web of Science、PubMed 和 Google Scholar 以及包括相关书籍在内的出版资料进行了广泛的文献检索。在文献检索中使用了大麻素、大麻、大麻、印度大麻、C. sativa、大麻、分析、高效液相色谱、超高效液相色谱、超高效液相色谱、定量、定性和质量控制等各种组合作为关键词:结果:报告了几种基于 HPLC 和 UPLC(或 UHPLC)的植物大麻素分析方法。虽然基于 HPLC-UV 或 HPLC-PDA 的简单方法很常见,但也有报道使用 HPLC-MS、HPLC-MS/MS、UPLC(或 UHPLC)-PDA、UPLC(或 UHPLC)-MS 和 UPLC(或 UHPLC)-MS/MS。报告还提到了数学和计算模型在优化方案中的应用。预分析包括各种环境友好型提取方案:在过去 4 年中,HPLC 和 UPLC(或 UHPLC)仍然是分析不同基质中植物大麻素的主要分析工具。
{"title":"Progress in the analysis of phytocannabinoids by HPLC and UPLC (or UHPLC) during 2020-2023.","authors":"Lutfun Nahar, Phanuphong Chaiwut, Sarita Sangthong, Tinnakorn Theansungnoen, Satyajit D Sarker","doi":"10.1002/pca.3374","DOIUrl":"10.1002/pca.3374","url":null,"abstract":"<p><strong>Introduction: </strong>Organic molecules that bind to cannabinoid receptors are known as cannabinoids. These molecules possess pharmacological properties similar to those produced by Cannabis sativa L. High-performance liquid chromatography (HPLC) and ultra-performance liquid chromatography (UPLC, also known as ultra-high-performance liquid chromatography, UHPLC) have become the most widely used analytical tools for detection and quantification of phytocannabinoids in various matrices. HPLC and UPLC (or UHPLC) are usually coupled to an ultraviolet (UV), photodiode array (PDA), or mass spectrometric (MS) detector.</p><p><strong>Objective: </strong>To critically appraise the literature on the application of HPLC and UPLC (or UHPLC) methods for the analysis of phytocannabinoids published from January 2020 to December 2023.</p><p><strong>Methodology: </strong>An extensive literature search was conducted using Web of Science, PubMed, and Google Scholar and published materials including relevant books. In various combinations, using cannabinoid in all combinations, cannabis, hemp, hashish, C. sativa, marijuana, analysis, HPLC, UHPLC, UPLC, and quantitative, qualitative, and quality control were used as the keywords for the literature search.</p><p><strong>Results: </strong>Several HPLC- and UPLC (or UHPLC)-based methods for the analysis of phytocannabinoids were reported. While simple HPLC-UV or HPLC-PDA-based methods were common, the use of HPLC-MS, HPLC-MS/MS, UPLC (or UHPLC)-PDA, UPLC (or UHPLC)-MS, and UPLC (or UHPLC)-MS/MS was also reported. Applications of mathematical and computational models for optimization of protocols were noted. Pre-analyses included various environmentally friendly extraction protocols.</p><p><strong>Conclusion: </strong>During the last 4 years, HPLC and UPLC (or UHPLC) remained the main analytical tools for phytocannabinoid analysis in different matrices.</p>","PeriodicalId":20095,"journal":{"name":"Phytochemical Analysis","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141262428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigation of Rosa species by an optimized LC-QTOF-MS/MS method using targeted and non-targeted screening strategies combined with multivariate chemometrics. 采用优化的 LC-QTOF-MS/MS 方法,将靶向和非靶向筛选策略与多元化学计量学相结合,研究蔷薇物种。
IF 3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-01 Epub Date: 2024-03-04 DOI: 10.1002/pca.3345
Petros D Mitsikaris, Stefanos Kostas, Ioannis Mourtzinos, Urania Menkissoglu-Spiroudi, Athanasios Papadopoulos, Natasa P Kalogiouri

Introduction: Plants of the Rosa genus are renowned for their pronounced and pleasant aroma and colors.

Objective: The aim of this work was to develop a novel liquid chromatographic triple quadrupole time-of-flight tandem mass spectrometric (LC-QTOF-MS/MS) method for the investigation of the bioactive fingerprint of petals of different genotypes belonging to Rosa damascena and Rosa centifolia species.

Methodology: Central composite design (CCD) of response surface methodology (RSM) was used for the optimization of the LC-QTOF-MS/MS method. The method was validated and target, suspect, and non-target screening workflows were applied. Statistical analysis and chemometric tools were utilized to explore the metabolic fingerprint of the Rosa species.

Results: RSM revealed that the optimal extraction parameters involved mixing 11 mg of sample with 1 mL of MeOH:H2O (70:30, v/v). Target analysis confirmed the presence of 11 analytes, all of which demonstrated low limits of quantification (LOQs; as low as 0.048 ng mg-1) and sufficient recoveries (RE: 85%-107%). In total, 28 compounds were tentatively identified through suspect analysis. Non-target analysis enabled the generation of robust OPLS-DA and HCA models that classified the samples according to their species with 100% accuracy.

Conclusions: A novel LC-QTOF-MS/MS method was developed and applied in the analysis of 47 R. centifolia and R. damascena flowers belonging to different genotypes.

简介蔷薇属植物以其独特宜人的香气和色彩而闻名:本研究旨在开发一种新型液相色谱三重四极杆飞行时间串联质谱(LC-QTOF-MS/MS)方法,用于研究大马士革蔷薇和百日红蔷薇不同基因型花瓣的生物活性指纹图谱:方法:采用响应面方法(RSM)的中央复合设计(CCD)对 LC-QTOF-MS/MS 方法进行优化。对该方法进行了验证,并应用了目标、疑似和非目标筛选工作流程。统计分析和化学计量学工具被用来探索罗莎物种的代谢指纹:RSM显示,最佳萃取参数是将11毫克样品与1毫升MeOH:H2 O(70:30, v/v)混合。目标分析证实了 11 种分析物的存在,所有分析物的定量限(LOQ;低至 0.048 ng mg-1)都很低,且回收率足够高(RE:85%-107%)。通过可疑分析,共初步确定了 28 种化合物。通过非目标物分析,建立了稳健的 OPLS-DA 和 HCA 模型,根据样品的种类进行分类,准确率达到 100%:开发了一种新的 LC-QTOF-MS/MS 方法,并将其应用于分析 47 朵属于不同基因型的 R. centifolia 和 R. damascena 花。
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引用次数: 0
Reconstruction of quality marker system for Ginkgo Folium tablet using UHPLC‐Q‐Orbitrap MS, quantum chemical calculation, network pharmacology, and molecular simulation 利用超高效液相色谱-Q-轨道阱质谱、量子化学计算、网络药理学和分子模拟重建银杏叶片剂的质量标记系统
IF 3.3 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-06-22 DOI: 10.1002/pca.3409
Ban Chen, Shuangshuang Liu, Xican Li, Chunhou Li, Rongxin Cai, Jingyuan Zeng, Yuchen Hu, Jiangtao Su, Shaoman Chen
IntroductionGinkgo Folium tablet (GFT) is a patented traditional Chinese medicine prepared from Ginkgo biloba leaves extract (GBE). However, the current quality indicators for GFT or GBE as designated by the Chinese Pharmacopoeia are insufficient in preventing counterfeit events.ObjectiveThis study aimed to putatively identify compounds in GFT and to further develop a quality marker (Q‐marker) system for GFT.MethodsA novel strategy utilizing database‐aided ultrahigh‐performance liquid chromatography‐quadrupole‐orbitrap mass spectrometry was employed to analyze the lyophilized aqueous powder of GFT. Subsequently, the identified compounds underwent quantum chemical calculations, network pharmacology, and molecular simulations through in silico approaches to evaluate the Q‐marker principles of traceability, specificity, and efficiency‐relevance.ResultsThe results revealed the putative identification of a total of 66 compounds, including 36 flavonoids, 7 phenolic acids and derivatives, 5 terpene lactones, 4 fatty acids and derivatives, 3 alkaloids, 1 amino acid, and 10 other compounds. Particularly, 16 compounds were unexpectedly observed, and seven compounds met the Q‐marker principles.ConclusionThis study recommends the seven compounds, namely, (−)‐gallocatechin, matrine, (−)‐epicatechin, ginkgolide C, ginkgolide A, ginkgolide B, and curdione, as the anti‐counterfeiting pharmacopoeia Q‐markers for GFT. The reconstruction of the Q‐marker system for GFT not only enhances the understanding of the compounds in GFT and other GBE‐based preparations but also provides valuable recommendations for the Pharmacopoeia Commission.
引言 银杏叶复方片(GFT)是一种从银杏叶提取物(GBE)中制备的专利中药。方法采用数据库辅助超高效液相色谱-四极杆-质谱联用技术对银杏叶提取物冻干水溶液粉末进行分析。结果共鉴定出 66 种化合物,包括 36 种黄酮类化合物、7 种酚酸及其衍生物、5 种萜内酯、4 种脂肪酸及其衍生物、3 种生物碱、1 种氨基酸和 10 种其他化合物。结论 本研究推荐(-)-儿茶素、马钱子碱、(-)-表儿茶素、银杏内酯 C、银杏内酯 A、银杏内酯 B 和莪术这 7 种化合物作为 GFT 的防伪药典 Q 标记。重构银杏叶内酯的 Q 标记系统不仅能加深人们对银杏叶内酯及其他基于国药成分的制剂中的化合物的了解,还能为药典委员会提供有价值的建议。
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引用次数: 0
Exploration of the anthocyanin and proanthocyanidin profile of Greek red grape skins belonging to Vradiano, Limnio, and Kotsifali cultivars, analyzed by a novel LC-QTOF-MS/MS method. 采用新型 LC-QTOF-MS/MS 方法分析希腊 Vradiano、Limnio 和 Kotsifali 栽培品种红葡萄皮的花青素和原花青素概况。
IF 3.3 3区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-11 DOI: 10.1002/pca.3400
Christina Karadimou, Elissavet Petsa, Niki-Athina Ouroumi, Emmanouil-Nikolaos Papadakis, Nikolaos Kontoudakis, Serafeim Theocharis, Ioannis Mourtzinos, Urania Menkissoglu-Spiroudi, Natasa P Kalogiouri, Stefanos Koundouras

Introduction: Winegrape varieties Kotsifali, Limnio, and Vradiano OBJECTIVE: The aim of this study was to develop a liquid chromatographic quadrupole time-of-flight tandem mass spectrometric (LC-QTOF-MS/MS) method for the investigation of the anthocyanin and proanthocyanidin content of Greek grape varieties employing target and suspect screening strategies.

Methodology: A novel LC-QTOF-MS/MS method was developed and validated to assess the anthocyanin content of Kotsifali, Limnio, and Vradiano grape varieties. Sixteen grape samples were collected from the main growing areas of each variety in Greece. The influence of the grape variety on the anthocyanin and proanthocyanidin composition of three Greek winegrapes was investigated using chemometrics.

Results: Excellent linearity (R2 > 0.99) was achieved for all the target analytes, and recoveries ranged between 90.1% and 119.1%. The limits of quantification (LOQs) and limits of detection (LODs) were calculated over the range of 0.020-0.40 mg/g and 0.010-0.13 mg/g, respectively. The RSD% was lower than 9.1% and 7.3% for intra-day and inter-day studies, respectively, indicating satisfactory trueness and precision. Target and suspect screening resulted in the identification of 5 and 26 anthocyanins, respectively.

Conclusions: Kotsifali variety exhibited a higher concentration of anthocyanins compared with Vradiano and Limnio. Higher levels of mean degree of polymerization (mDp) and different percentage levels of prodelphinidins (%P) were established among the varieties.

简介:酿酒葡萄品种 Kotsifali、Limnio 和 Vradiano 目标:本研究旨在开发一种液相色谱四极杆飞行时间串联质谱(LC-QTOF-MS/MS)方法,采用目标筛选和可疑筛选策略来检测希腊葡萄品种的花青素和原花青素含量:开发并验证了一种新型的 LC-QTOF-MS/MS 方法,用于评估 Kotsifali、Limnio 和 Vradiano 葡萄品种的花青素含量。从希腊各品种的主要种植区采集了 16 份葡萄样品。采用化学计量学方法研究了葡萄品种对希腊三种酿酒葡萄的花青素和原花青素组成的影响:所有目标分析物的线性关系都很好(R2 > 0.99),回收率在 90.1%和 119.1%之间。计算得出的定量限(LOQ)和检出限(LOD)分别为 0.020-0.40 mg/g 和 0.010-0.13 mg/g。日内和日间研究的 RSD%分别低于 9.1%和 7.3%,表明真实度和精密度令人满意。目标筛选和疑似筛选分别鉴定出 5 种和 26 种花青素:结论:与 Vradiano 和 Limnio 相比,Kotsifali 品种的花青素含量更高。结论:与 Vradiano 和 Limnio 相比,Kotsifali 品种表现出更高的花青素浓度,不同品种的平均聚合度(mDp)水平更高,原蝶呤含量(%P)也不同。
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引用次数: 0
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Phytochemical Analysis
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