Blue light enhances the susceptibility of Nicotiana benthamiana to Phytophthora infestans, a causative agent of late blight disease. Investigating how blue light affects potato late blight resistance is an interesting aspect of exploring new ways to control late blight disease. Blue light photoreceptor phototropins (phot1, phot2) and their downstream interact protein StNRL1 have been shown to negatively regulate late blight resistance. In order to investigate whether other potato NPH3/RPT2-Like (NRL) family members are involved in regulating late blight resistance, this study focused on the potato NRL proteins containing RxSxS motif at the C-terminus. Another potato NRL protein StNRL-9, containing RxSxS motifs, was found to negatively regulate P. infestans resistance in potato and N. benthamiana. Overexpression of StNRL-9 in potato and N. benthamiana suppresses the accumulation of reactive oxygen species (ROS) and expression of the PTI marker genes NbWRKY7 and NbWRKY8. Similar to StNRL1, StNRL-9 interacts with the blue light receptors Stphot1 and Stphot2 on the cell membrane and could promote the degradation of a positive immune regulator StSWAP70. However StNRL-9 does not inhibit INF1-mediated cell death (ICD), which is different from the StNRL1 that inhibits ICD, indicating that both StNRL1 and StNRL-9 inhibit plant immunity in diverse ways. This study provides valuable information for further exploration of how plant phototropins and NRL family proteins regulate plant immunity.
{"title":"Potato NPH3/RPT2-like (NRL) member StNRL-9 interacts with Stphots and negatively regulates late blight resistance.","authors":"Tianyu Lin, Huishan Qiu, Dong Cheng, Qingguo Sun, Lang Liu, Zhendong Tian","doi":"10.1111/ppl.14594","DOIUrl":"https://doi.org/10.1111/ppl.14594","url":null,"abstract":"<p><p>Blue light enhances the susceptibility of Nicotiana benthamiana to Phytophthora infestans, a causative agent of late blight disease. Investigating how blue light affects potato late blight resistance is an interesting aspect of exploring new ways to control late blight disease. Blue light photoreceptor phototropins (phot1, phot2) and their downstream interact protein StNRL1 have been shown to negatively regulate late blight resistance. In order to investigate whether other potato NPH3/RPT2-Like (NRL) family members are involved in regulating late blight resistance, this study focused on the potato NRL proteins containing RxSxS motif at the C-terminus. Another potato NRL protein StNRL-9, containing RxSxS motifs, was found to negatively regulate P. infestans resistance in potato and N. benthamiana. Overexpression of StNRL-9 in potato and N. benthamiana suppresses the accumulation of reactive oxygen species (ROS) and expression of the PTI marker genes NbWRKY7 and NbWRKY8. Similar to StNRL1, StNRL-9 interacts with the blue light receptors Stphot1 and Stphot2 on the cell membrane and could promote the degradation of a positive immune regulator StSWAP70. However StNRL-9 does not inhibit INF1-mediated cell death (ICD), which is different from the StNRL1 that inhibits ICD, indicating that both StNRL1 and StNRL-9 inhibit plant immunity in diverse ways. This study provides valuable information for further exploration of how plant phototropins and NRL family proteins regulate plant immunity.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"176 6","pages":"e14594"},"PeriodicalIF":5.4,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142546800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"In the Spotlight: Journey from a Single Cell to a Flourishing Forest.","authors":"Haoran Peng","doi":"10.1111/ppl.14609","DOIUrl":"https://doi.org/10.1111/ppl.14609","url":null,"abstract":"","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"176 6","pages":"e14609"},"PeriodicalIF":5.4,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142581691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ali Raza, Savita Bhardwaj, Md Atikur Rahman, Pedro García-Caparrós, Rhys G R Copeland, Sidra Charagh, Rosa M Rivero, Subramaniam Gopalakrishnan, Francisco J Corpas, Kadambot H M Siddique, Zhangli Hu
As global climate change intensifies, the occurrence and severity of various abiotic stresses will significantly threaten plant health and productivity. Drought stress (DS) is a formidable obstacle, disrupting normal plant functions through specific morphological, physiological, biochemical, and molecular mechanisms. Understanding how plants navigate DS is paramount to mitigating its adverse effects. In response to DS, plants synthesize or accumulate various plant growth regulators (PGRs), including phytohormones, neurotransmitters, gasotransmitters, and polyamines, which present promising sustainable green chemical strategies to adapt or tolerate stress conditions. These PGRs orchestrate crucial plant structure and function adjustments, activating defense systems and modulating cellular-level responses, transcript levels, transcription factors, metabolic genes, and stress-responsive candidate proteins. However, the efficacy of these molecules in mitigating DS depends on the plant species, applied PGR dose, treatment type, duration of DS exposure, and growth stages. Thus, exploring the integrated impact of PGRs on enhancing plant fitness and DS tolerance is crucial for global food security and sustainable agriculture. This review investigates plant responses to DS, explains the potential of exogenously applied diverse PGRs, dissects the complex chemistry among PGRs, and sheds light on omics approaches for harnessing the molecular basis of DS tolerance. This updated review delivers comprehensive mechanistic insights for leveraging various PGRs to enhance overall plant fitness under DS conditions.
{"title":"Fighting to thrive via plant growth regulators: Green chemical strategies for drought stress tolerance.","authors":"Ali Raza, Savita Bhardwaj, Md Atikur Rahman, Pedro García-Caparrós, Rhys G R Copeland, Sidra Charagh, Rosa M Rivero, Subramaniam Gopalakrishnan, Francisco J Corpas, Kadambot H M Siddique, Zhangli Hu","doi":"10.1111/ppl.14605","DOIUrl":"https://doi.org/10.1111/ppl.14605","url":null,"abstract":"<p><p>As global climate change intensifies, the occurrence and severity of various abiotic stresses will significantly threaten plant health and productivity. Drought stress (DS) is a formidable obstacle, disrupting normal plant functions through specific morphological, physiological, biochemical, and molecular mechanisms. Understanding how plants navigate DS is paramount to mitigating its adverse effects. In response to DS, plants synthesize or accumulate various plant growth regulators (PGRs), including phytohormones, neurotransmitters, gasotransmitters, and polyamines, which present promising sustainable green chemical strategies to adapt or tolerate stress conditions. These PGRs orchestrate crucial plant structure and function adjustments, activating defense systems and modulating cellular-level responses, transcript levels, transcription factors, metabolic genes, and stress-responsive candidate proteins. However, the efficacy of these molecules in mitigating DS depends on the plant species, applied PGR dose, treatment type, duration of DS exposure, and growth stages. Thus, exploring the integrated impact of PGRs on enhancing plant fitness and DS tolerance is crucial for global food security and sustainable agriculture. This review investigates plant responses to DS, explains the potential of exogenously applied diverse PGRs, dissects the complex chemistry among PGRs, and sheds light on omics approaches for harnessing the molecular basis of DS tolerance. This updated review delivers comprehensive mechanistic insights for leveraging various PGRs to enhance overall plant fitness under DS conditions.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"176 6","pages":"e14605"},"PeriodicalIF":5.4,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142605950","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fatemeh Gholizadeh, Sylva Prerostová, Magda Pál, Kinga Benczúr, Kamirán Á. Hamow, Imre Majláth, József Kun, Attila Gyenesei, Péter Urbán, Gabriella Szalai, Radomíra Vanková, Tibor Janda
The main aim of this work was to better understand how the low temperature signal from the leaves may affect the stress responses in the roots, and how the light conditions modify certain stress acclimation processes in rice plants. Rice plants grown at 27°C were exposed to low temperatures (12°C) with different light intensities, and in the case of some groups of plants, only the leaves received the cold, while the roots remained at control temperature. RNA sequencing focusing on the roots of plants grown under normal growth light conditions found 525 differentially expressed genes in different comparisons. Exposure to low temperature led to more down‐regulated than up‐regulated genes. Comparison between roots of the leaf‐stressed plants and whole cold‐treated or control plants revealed that nitrogen metabolism and nitric oxide‐related signalling, as well as the phenylpropanoid‐related processes, were specifically affected. Real‐time PCR results focusing on the COLD1 and polyamine oxidase genes, as well as metabolomics targeting hormonal changes and phenolic compounds also showed that not only cold exposure of the leaves, either alone or together with the roots, but also the light conditions may influence certain stress responses in the roots of rice plants.
{"title":"Elucidating light and temperature‐dependent signalling pathways from shoot to root in rice plants: Implications for stress responses","authors":"Fatemeh Gholizadeh, Sylva Prerostová, Magda Pál, Kinga Benczúr, Kamirán Á. Hamow, Imre Majláth, József Kun, Attila Gyenesei, Péter Urbán, Gabriella Szalai, Radomíra Vanková, Tibor Janda","doi":"10.1111/ppl.14541","DOIUrl":"https://doi.org/10.1111/ppl.14541","url":null,"abstract":"The main aim of this work was to better understand how the low temperature signal from the leaves may affect the stress responses in the roots, and how the light conditions modify certain stress acclimation processes in rice plants. Rice plants grown at 27°C were exposed to low temperatures (12°C) with different light intensities, and in the case of some groups of plants, only the leaves received the cold, while the roots remained at control temperature. RNA sequencing focusing on the roots of plants grown under normal growth light conditions found 525 differentially expressed genes in different comparisons. Exposure to low temperature led to more down‐regulated than up‐regulated genes. Comparison between roots of the leaf‐stressed plants and whole cold‐treated or control plants revealed that nitrogen metabolism and nitric oxide‐related signalling, as well as the phenylpropanoid‐related processes, were specifically affected. Real‐time PCR results focusing on the <jats:italic>COLD1</jats:italic> and polyamine oxidase genes, as well as metabolomics targeting hormonal changes and phenolic compounds also showed that not only cold exposure of the leaves, either alone or together with the roots, but also the light conditions may influence certain stress responses in the roots of rice plants.","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"21 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142257287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shaistul Islam, Firoz Mohammad, Adnan Shakeel, Francisco J. Corpas
Salt stress is a prevalent environmental issue that disrupts the redox balance and metabolic processes in plants, leading to reduced crop growth and productivity. Currently, over 6.74 million hectares in India are salt‐affected, and about 75% of this land lies in states that are the major cultivators of edible oilseed crops (rapeseed‐mustard). Therefore, this study focused on the efficacy of glycine betaine (GB) supplementation in mitigating the detrimental effects of salt stress in Brassica juncea L. (Indian mustard) plants. Indian mustard plants were subjected to salt stress [0, 50, 100, and 150 mM sodium chloride] 20 days after sowing (DAS), while a foliar spray of 20 mM GB was applied to the foliage at 50 and 70 DAS. The data showed that salt stress substantially reduced growth, photosynthetic rate, membrane stability, and yield by significantly increasing lipid peroxidation, ion toxicity, cell death, electrolyte leakage, and reactive oxygen species accumulation that triggered oxidative stress. Supplementation with 20 mM GB provided tolerance to plants against salt‐induced toxicity since it substantially increased growth, biomass, water content, nutrient uptake, and photosynthetic efficiency. Additionally, GB enhances the accumulation of osmolytes, enhances the antioxidant defence system, improves ionic balance, and enhances cell viability. Taken together, the obtained data provides deeper insights into the beneficial effect of the exogenous GB application that could have biotechnological uses to enhance crop stress tolerance in challenging environments.
{"title":"Glycine betaine: A multifaceted protectant against salt stress in Indian mustard through ionic homeostasis, ROS scavenging and osmotic regulation","authors":"Shaistul Islam, Firoz Mohammad, Adnan Shakeel, Francisco J. Corpas","doi":"10.1111/ppl.14530","DOIUrl":"https://doi.org/10.1111/ppl.14530","url":null,"abstract":"Salt stress is a prevalent environmental issue that disrupts the redox balance and metabolic processes in plants, leading to reduced crop growth and productivity. Currently, over 6.74 million hectares in India are salt‐affected, and about 75% of this land lies in states that are the major cultivators of edible oilseed crops (rapeseed‐mustard). Therefore, this study focused on the efficacy of glycine betaine (GB) supplementation in mitigating the detrimental effects of salt stress in <jats:italic>Brassica juncea</jats:italic> L. (Indian mustard) plants. Indian mustard plants were subjected to salt stress [0, 50, 100, and 150 mM sodium chloride] 20 days after sowing (DAS), while a foliar spray of 20 mM GB was applied to the foliage at 50 and 70 DAS. The data showed that salt stress substantially reduced growth, photosynthetic rate, membrane stability, and yield by significantly increasing lipid peroxidation, ion toxicity, cell death, electrolyte leakage, and reactive oxygen species accumulation that triggered oxidative stress. Supplementation with 20 mM GB provided tolerance to plants against salt‐induced toxicity since it substantially increased growth, biomass, water content, nutrient uptake, and photosynthetic efficiency. Additionally, GB enhances the accumulation of osmolytes, enhances the antioxidant defence system, improves ionic balance, and enhances cell viability. Taken together, the obtained data provides deeper insights into the beneficial effect of the exogenous GB application that could have biotechnological uses to enhance crop stress tolerance in challenging environments.","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"17 1","pages":"e14530"},"PeriodicalIF":6.4,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142257290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pedro Nadais, Bruno Sousa, Maria Martins, Cláudia Pereira, Ana Marta Pereira, Fernanda Fidalgo, Cristiano Soares
Glyphosate (GLY), the most widely used herbicide, has been regarded as an emergent environmental contaminant due to its constant and cumulative use, with potential harm to non‐target organisms, such as crops, disrupting cells' redox balance. Therefore, plants need to fine‐tune their antioxidant (AOX) mechanisms to thrive under GLY‐contaminated environments. Proline overaccumulation is a common response in plants exposed to GLY, yet its role in GLY‐induced toxicity remains unclear. Thus, this study explores whether Pro overaccumulation in response to GLY is perceived as a downstream tolerance mechanism or an early‐warning stress signal. To investigate this, Arabidopsis thaliana T‐DNA mutant lines for Pro biosynthetic (P5CS1) and catabolic genes (ProDH) were used and screened for their GLY susceptibility. Upon seedlings' exposure to GLY (0.75 mg L−1) for 14 days, the herbicide led to reduced biomass in all genotypes, accompanied by Pro overaccumulation. Mutants with heightened Pro levels (prodh) exhibited the greatest biomass reduction, increased lipid peroxidation (LP), and hydrogen peroxide (H2O2) levels, accompanied by a compromised performance of the AOX system. Conversely, p5cs1–4, mutants with lower Pro levels, demonstrated an enhanced AOX system activation, not only with increased levels of glutathione (GSH) and ascorbate (AsA), but also with increased activity of both ascorbate peroxidase (APX) and catalase (CAT). These findings suggest that Pro overaccumulation under GLY exposure is associated with stress sensitivity rather than tolerance, highlighting its potential as an early‐warning signal for GLY toxicity in non‐target plants and for detecting weed resistance.
{"title":"Unravelling the role of proline in glyphosate‐mediated toxicity – tolerance mechanism or stress signal?","authors":"Pedro Nadais, Bruno Sousa, Maria Martins, Cláudia Pereira, Ana Marta Pereira, Fernanda Fidalgo, Cristiano Soares","doi":"10.1111/ppl.14532","DOIUrl":"https://doi.org/10.1111/ppl.14532","url":null,"abstract":"Glyphosate (GLY), the most widely used herbicide, has been regarded as an emergent environmental contaminant due to its constant and cumulative use, with potential harm to non‐target organisms, such as crops, disrupting cells' redox balance. Therefore, plants need to fine‐tune their antioxidant (AOX) mechanisms to thrive under GLY‐contaminated environments. Proline overaccumulation is a common response in plants exposed to GLY, yet its role in GLY‐induced toxicity remains unclear. Thus, this study explores whether Pro overaccumulation in response to GLY is perceived as a downstream tolerance mechanism or an early‐warning stress signal. To investigate this, <jats:italic>Arabidopsis thaliana</jats:italic> T‐DNA mutant lines for Pro biosynthetic (<jats:italic>P5CS1</jats:italic>) and catabolic genes (<jats:italic>ProDH</jats:italic>) were used and screened for their GLY susceptibility. Upon seedlings' exposure to GLY (0.75 mg L<jats:sup>−1</jats:sup>) for 14 days, the herbicide led to reduced biomass in all genotypes, accompanied by Pro overaccumulation. Mutants with heightened Pro levels (<jats:italic>prodh</jats:italic>) exhibited the greatest biomass reduction, increased lipid peroxidation (LP), and hydrogen peroxide (H<jats:sub>2</jats:sub>O<jats:sub>2</jats:sub>) levels, accompanied by a compromised performance of the AOX system. Conversely, <jats:italic>p5cs1–4</jats:italic>, mutants with lower Pro levels, demonstrated an enhanced AOX system activation, not only with increased levels of glutathione (GSH) and ascorbate (AsA), but also with increased activity of both ascorbate peroxidase (APX) and catalase (CAT). These findings suggest that Pro overaccumulation under GLY exposure is associated with stress sensitivity rather than tolerance, highlighting its potential as an early‐warning signal for GLY toxicity in non‐target plants and for detecting weed resistance.","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"4 1","pages":"e14532"},"PeriodicalIF":6.4,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142257288","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chlorophyll fluorescence measurement is a quick and efficient tool for plant stress‐level detection. The use of Pulse amplitude modulation (PAM), allows the detection of the plant stress level under field conditions. Over the years, several parameters estimating different parts of the chlorophyll and photosystem response were developed to describe the plant stress level. Despite all fluorescence parameters being based on the same measurements, their relationship remains unclear, and their response to drought stress is significantly influenced by the incoming light intensity. In this study, we use six different annual plants from different families, both C3 and C4 photosynthesis types, to describe the plant response to drought through the fluorescence parameters response (NPQ, Y(NPQ), and qN). To describe the dynamic response to drought, we employed light‐response curves, adapting and fitting an equation for each curve to compare the drought response for each fluorescence parameter. The results demonstrated that the non‐photochemical quenching (NPQ) and the quantum yield of non‐photochemical quenching [Y(NPQ)] maximal values decrease when the PSII functionality (Fv/Fm) is lower than ~0.7. The basal fluorescence level ( and remained unaffected by the stress level and stayed stable across the various plants and stress levels. Our results indicate that the response of different stress parameters follows a distinct order under continuous drought. Consequently, monitoring just one parameter during long‐term stress assessments may result in biased analysis outcomes. Incorporating multiple chlorophyll fluorescence parameters offers a more accurate reflection of the plant's stress level.
{"title":"Dynamic responses of chlorophyll fluorescence parameters to drought across diverse plant families","authors":"Yotam Zait, Or Emma Shemer, Amnon Cochavi","doi":"10.1111/ppl.14527","DOIUrl":"https://doi.org/10.1111/ppl.14527","url":null,"abstract":"Chlorophyll fluorescence measurement is a quick and efficient tool for plant stress‐level detection. The use of Pulse amplitude modulation (PAM), allows the detection of the plant stress level under field conditions. Over the years, several parameters estimating different parts of the chlorophyll and photosystem response were developed to describe the plant stress level. Despite all fluorescence parameters being based on the same measurements, their relationship remains unclear, and their response to drought stress is significantly influenced by the incoming light intensity. In this study, we use six different annual plants from different families, both C3 and C4 photosynthesis types, to describe the plant response to drought through the fluorescence parameters response (NPQ, Y(NPQ), and qN). To describe the dynamic response to drought, we employed light‐response curves, adapting and fitting an equation for each curve to compare the drought response for each fluorescence parameter. The results demonstrated that the non‐photochemical quenching (NPQ) and the quantum yield of non‐photochemical quenching [Y(NPQ)] maximal values decrease when the PSII functionality (F<jats:sub>v</jats:sub>/F<jats:sub>m</jats:sub>) is lower than ~0.7. The basal fluorescence level ( and remained unaffected by the stress level and stayed stable across the various plants and stress levels. Our results indicate that the response of different stress parameters follows a distinct order under continuous drought. Consequently, monitoring just one parameter during long‐term stress assessments may result in biased analysis outcomes. Incorporating multiple chlorophyll fluorescence parameters offers a more accurate reflection of the plant's stress level.","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"4 1","pages":"e14527"},"PeriodicalIF":6.4,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142257289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Our study attempts to address the following questions: among numerous photosynthetic modules, which parameters notably influence the rapid chlorophyll fluorescence (ChlF) rise, the so‐called O‐J‐I‐P transient, in conjunction with the P515 signal, as these two records are easily obtained and widely used in photosynthesis research, and how are these parameters ranked in terms of their importance? These questions might be difficult to answer solely through experimental assays. Therefore, we employed an established photosynthesis model. Firstly, we utilized the model to simulate the measured rapid ChlF rise and P515 kinetics simultaneously. Secondly, we employed the sensitivity analysis (SA) tool by randomly altering model parameters to observe their effects on model output variables. Thirdly, we systematically identified significant parameters for both or one of the kinetics across various scenarios.A novel aspect of our study is the application of the Morris method, a global SA tool, to simultaneously assess the significance of model parameters in shaping both or one of the kinetics. The Morris SA technique enables the quantification of how much a specific parameter affects O‐J‐I‐P transient during particular time intervals (e.g., J, I, and P steps). This allowed us to theoretically analyze which step is more significantly influenced by the parameter.In summary, our study contributes to the field by providing a comprehensive analysis of photosynthesis kinetics and emphasizing the importance of parameter selection in modelling this process. These findings can inform future research efforts aimed at improving photosynthesis models and advancing our understanding of photosynthetic processes.
我们的研究试图解决以下问题：在众多光合作用模块中，哪些参数会显著影响叶绿素荧光（ChlF）的快速上升，即所谓的 O-J-I-P 瞬态，以及 P515 信号，因为这两种记录很容易获得，并广泛应用于光合作用研究；这些参数的重要性如何排序？这些问题仅靠实验测定可能难以回答。因此，我们采用了一个成熟的光合作用模型。首先，我们利用该模型同时模拟了测量到的 ChlF 快速上升和 P515 动力学。其次，我们使用了敏感性分析（SA）工具，随机改变模型参数，观察它们对模型输出变量的影响。我们这项研究的一个新颖之处在于应用了莫里斯方法（一种全局性的敏感性分析工具）来同时评估模型参数在塑造两种或一种动力学过程中的重要性。Morris SA 技术可以量化特定参数在特定时间间隔（如 J、I 和 P 步骤）内对 O-J-I-P 瞬态的影响程度。总之，我们的研究对光合作用动力学进行了全面分析，并强调了参数选择在模拟这一过程中的重要性，从而为该领域做出了贡献。这些发现可以为今后的研究工作提供参考，从而改进光合作用模型，加深我们对光合作用过程的理解。
{"title":"Assessing key parameters in simultaneous simulation of rapid kinetics of chlorophyll a fluorescence and trans‐thylakoid electric potential difference","authors":"Hui Lyu, Dušan Lazár","doi":"10.1111/ppl.14517","DOIUrl":"https://doi.org/10.1111/ppl.14517","url":null,"abstract":"Our study attempts to address the following questions: among numerous photosynthetic modules, which parameters notably influence the rapid chlorophyll fluorescence (ChlF) rise, the so‐called O‐J‐I‐P transient, in conjunction with the P515 signal, as these two records are easily obtained and widely used in photosynthesis research, and how are these parameters ranked in terms of their importance? These questions might be difficult to answer solely through experimental assays. Therefore, we employed an established photosynthesis model. Firstly, we utilized the model to simulate the measured rapid ChlF rise and P515 kinetics simultaneously. Secondly, we employed the sensitivity analysis (SA) tool by randomly altering model parameters to observe their effects on model output variables. Thirdly, we systematically identified significant parameters for both or one of the kinetics across various scenarios.A novel aspect of our study is the application of the Morris method, a global SA tool, to simultaneously assess the significance of model parameters in shaping both or one of the kinetics. The Morris SA technique enables the quantification of how much a specific parameter affects O‐J‐I‐P transient during particular time intervals (e.g., J, I, and P steps). This allowed us to theoretically analyze which step is more significantly influenced by the parameter.In summary, our study contributes to the field by providing a comprehensive analysis of photosynthesis kinetics and emphasizing the importance of parameter selection in modelling this process. These findings can inform future research efforts aimed at improving photosynthesis models and advancing our understanding of photosynthetic processes.","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"15 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142257315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nga Nguyen, Ulrich Bergmann, Laura Jaakola, Hely Häggman, Soile Jokipii‐Lukkari, Katalin Toth
Bilberry (Vaccinium myrtillus L.) is a wild berry species that is prevalent in northern Europe. It is renowned and well‐documented for its nutritional and bioactive properties, especially due to its anthocyanin content. However, an overview of biological systems governing changes in other crucial quality traits, such as size, firmness, and flavours, has received less attention. In the present study, we investigated detailed metabolomic and proteomic profiles at four different ripening stages of bilberry to provide a comprehensive understanding of overall quality during fruit ripening. By integrating omics datasets, we revealed a novel global regulatory network of plant hormones and physiological processes occurring during bilberry ripening. Key physiological processes, such as energy and primary metabolism, strongly correlate with elevated levels of gibberellic acids, jasmonic acid, and salicylic acid in unripe fruits. In contrast, as the fruit ripened, processes including flavour formation, cell wall modification, seed storage, and secondary metabolism became more prominent, and these were associated with increased abscisic acid levels. An indication of the increase in ethylene biosynthesis was detected during bilberry development, raising questions about the classification of non‐climacteric and climacteric fruits. Our findings extend the current knowledge on the physiological and biochemical processes occurring during fruit ripening, which can serve as a baseline for studies on both wild and commercially grown berry species. Furthermore, our data may facilitate the optimization of storage conditions and breeding programs, as well as the future exploration of beneficial compounds in berries for new applications in food, cosmetics, and medicines.
{"title":"Bilberry metabolomic and proteomic profiling during fruit ripening reveals key dynamics affecting fruit quality","authors":"Nga Nguyen, Ulrich Bergmann, Laura Jaakola, Hely Häggman, Soile Jokipii‐Lukkari, Katalin Toth","doi":"10.1111/ppl.14534","DOIUrl":"https://doi.org/10.1111/ppl.14534","url":null,"abstract":"Bilberry (<jats:italic>Vaccinium myrtillus</jats:italic> L.) is a wild berry species that is prevalent in northern Europe. It is renowned and well‐documented for its nutritional and bioactive properties, especially due to its anthocyanin content. However, an overview of biological systems governing changes in other crucial quality traits, such as size, firmness, and flavours, has received less attention. In the present study, we investigated detailed metabolomic and proteomic profiles at four different ripening stages of bilberry to provide a comprehensive understanding of overall quality during fruit ripening. By integrating omics datasets, we revealed a novel global regulatory network of plant hormones and physiological processes occurring during bilberry ripening. Key physiological processes, such as energy and primary metabolism, strongly correlate with elevated levels of gibberellic acids, jasmonic acid, and salicylic acid in unripe fruits. In contrast, as the fruit ripened, processes including flavour formation, cell wall modification, seed storage, and secondary metabolism became more prominent, and these were associated with increased abscisic acid levels. An indication of the increase in ethylene biosynthesis was detected during bilberry development, raising questions about the classification of non‐climacteric and climacteric fruits. Our findings extend the current knowledge on the physiological and biochemical processes occurring during fruit ripening, which can serve as a baseline for studies on both wild and commercially grown berry species. Furthermore, our data may facilitate the optimization of storage conditions and breeding programs, as well as the future exploration of beneficial compounds in berries for new applications in food, cosmetics, and medicines.","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"52 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142257311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Grain size and shape are critical agronomic traits that directly impact rice grain yield. Identifying genes that control these traits can provide new strategies for yield improvement. In this study, we characterized a rice mutant, reduced grain length (rgl), which exhibited decreased grain length due to reduced cell proliferation. Map‐based cloning identified a base deletion in OsRGL2, a gene encoding a keratin‐associated protein (KAP), as the cause of the mutant phenotype. CRISPR‐Cas9‐generated OsRGL2 knockout mutants also displayed reduced grain length, confirming its role. OsRGL2 transcripts were detected in various tissues, with relative higher gene expression in young panicles, and OsRGL2 was localized to the plasma membrane. Overexpression of OsRGL2 increased grain size by promoting cell proliferation in the spikelet hull and significantly enhanced grain yield per plant. Importantly, OsRGL2 was found to interact with RGB1, indicating that OsRGL2 positively regulates grain size and yield through its interaction with RGB1. Additionally, OsRGL2 regulated the expression of cell cycle‐related genes, further elucidating its role in grain development. These findings demonstrate that OsRGL2 is a positive regulator of grain size in rice, and manipulating its expression may offer a novel strategy for enhancing rice grain yield.
{"title":"Mutation of KAP, which encodes a keratin‐associated protein, affects grain size and yield production in rice","authors":"Chunpeng Chen, Weimin Cheng, Hongrui Jiang, Cheng Fang, Wenhao Li, Lingling Peng, Liangzhi Tao, Yue Zhan, Yuejin Wu, Xianzhong Huang, Binmei Liu, Yafeng Ye","doi":"10.1111/ppl.14528","DOIUrl":"https://doi.org/10.1111/ppl.14528","url":null,"abstract":"Grain size and shape are critical agronomic traits that directly impact rice grain yield. Identifying genes that control these traits can provide new strategies for yield improvement. In this study, we characterized a rice mutant, reduced grain length (<jats:italic>rgl</jats:italic>), which exhibited decreased grain length due to reduced cell proliferation. Map‐based cloning identified a base deletion in <jats:italic>OsRGL2</jats:italic>, a gene encoding a keratin‐associated protein (KAP), as the cause of the mutant phenotype. CRISPR‐Cas9‐generated <jats:italic>OsRGL2</jats:italic> knockout mutants also displayed reduced grain length, confirming its role. <jats:italic>OsRGL2</jats:italic> transcripts were detected in various tissues, with relative higher gene expression in young panicles, and OsRGL2 was localized to the plasma membrane. Overexpression of <jats:italic>OsRGL2</jats:italic> increased grain size by promoting cell proliferation in the spikelet hull and significantly enhanced grain yield per plant. Importantly, OsRGL2 was found to interact with RGB1, indicating that OsRGL2 positively regulates grain size and yield through its interaction with RGB1. Additionally, OsRGL2 regulated the expression of cell cycle‐related genes, further elucidating its role in grain development. These findings demonstrate that OsRGL2 is a positive regulator of grain size in rice, and manipulating its expression may offer a novel strategy for enhancing rice grain yield.","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"5 1","pages":""},"PeriodicalIF":6.4,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142257312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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