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Brassinosteroids at the Crossroads of Crop Architecture and Nitrogen Efficiency: Engineering Smart Ideotypes for the Next Green Revolution. 油菜素内酯在作物结构和氮效率的十字路口:下一次绿色革命的工程智能理念。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70767
Difei Wang, Zhengrong Jiang, Gaoyuan Chen, Mengyuan Yan, Jinling Hu, Yuhui Wang, Xinao Tang, Zijun Jiang, Yang Tao, Yanfeng Ding, Yu Jiang, Lin Chen, Nana Su, Zhenguo Shen, Soulaiman Sakr, Ganghua Li

Brassinosteroids (BRs), a class of essential plant steroid hormones, have emerged as central regulators in optimizing crop architecture, yield potential, and nutrient use efficiency (NUE). Through crosstalk with gibberellin (GA), auxin (IAA), strigolactone (SL), and nitrogen (N) signaling pathways, BRs coordinate cell elongation, tillering, and nutrient assimilation to optimize growth-resource balance. Allelic variations affecting BR biosynthesis or perception often generate compact, erect-leaf plant types suited for dense planting and enhanced lodging resistance-key traits for high-yield ideotypes. This review outlines BR signaling networks and crosstalk with GA, IAA, SL, and N pathways in cereals. Two principal regulatory hubs are emphasized: the Zinc Finger protein (ZnF)-BRASSINOSTEROID INSENSITIVE1 KINASE INHIBITOR1 (BKI1)-BRASSINOSTEROID INSENSITIVE1 (BRI1) receptor module, which fine-tunes BR perception and determines architectural traits, and the GLYCOGEN SYNTHASE KINASE 2 (GSK2)-BRASSINAZOLE-RESISTANT1 (BZR1)-DWARF AND LOW-TILLERING (DLT)-SMALL ORGAN SIZE1 (SMOS1)-GROWTH-REGULATING FACTOR4 (GRF4)-DELLA regulatory module, which integrates BR signaling with GA responsiveness and nitrogen metabolism. Moreover, deletion of the "r-e-z" haploblock, encompassing Rht-B1b, EamA-B, and ZnF-B, elicits a semi-dwarf phenotype with 6.48%-15.25% yield increases. These interconnected networks establish a molecular framework for engineering BR-driven cereal ideotypes. Future breeding could improve resource efficiency by fine-tuning BR activity in shoots for compact growth and promoting it in roots for enhanced nutrient uptake. Integrating genomics and precision gene editing will enable fine-tuning of BR signaling intensity and its crosstalk with other hormonal and nutrient pathways. By prioritizing growth optimization over mere growth maximization, BR-based strategies offer a sustainable path toward high-yield, nitrogen-efficient cereal production.

油菜素内酯(BRs)是一类必需的植物类固醇激素,在优化作物结构、产量潜力和养分利用效率(NUE)方面发挥着核心调节作用。BRs通过与赤霉素(GA)、生长素(IAA)、独角麦内酯(SL)和氮(N)信号通路的串扰,协调细胞伸长、分蘖和养分同化,优化生长-资源平衡。影响BR生物合成或感知的等位基因变异通常会产生适合密集种植的紧凑直立叶片植物类型,并增强抗倒伏性,这是高产理想型的关键性状。本文综述了谷物中BR信号网络及其与GA、IAA、SL和N信号通路的串扰。强调了两个主要的监管中心:锌指蛋白(ZnF)-油菜素内酯不敏感1激酶抑制剂(BKI1)-油菜素内酯不敏感1 (BRI1)受体模块,调控BR感知并决定结构性状;糖原合成酶激酶2 (GSK2)-油菜素唑抗性1 (BZR1)-矮化和低分蘖(DLT)-小器官大小1 (SMOS1)-生长调节因子4 (GRF4)-DELLA调节模块,将BR信号与GA响应性和氮代谢结合起来。此外,缺失包含Rht-B1b、EamA-B和ZnF-B的“r-e-z”单倍体块会导致半矮化表型,产量增加6.48%-15.25%。这些相互关联的网络建立了一个分子框架,用于设计br驱动的谷物理想型。未来的育种可以通过微调芽部BR活性以促进致密生长和促进根部BR活性以提高养分吸收来提高资源利用效率。整合基因组学和精确基因编辑将使BR信号强度及其与其他激素和营养途径的串扰得以微调。通过优先考虑生长优化而不是单纯的生长最大化,基于br的战略为高产、高效氮的谷物生产提供了一条可持续的道路。
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引用次数: 0
Uptake Characteristics and Phytohormone Metabolic Disruption of Bisphenol A in Pepper (Capsicum annuum L.) Roots Under Soil Exposure. 辣椒(Capsicum annuum L.)对双酚A的吸收特性及激素代谢干扰暴露在土壤下的根。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70742
Zhigang Huang, Qingmei Zhu, Jing Lu, Ze Liao, Qinyao Li, Qiuping Wang, Binglin Wu, Zhoubin Liu, Shaohua Zhu, Zhoufei Luo

Soil contamination by bisphenol A (BPA) has raised considerable ecological and environmental concerns, particularly due to its potential impact on plant growth. However, the interactive effects of BPA and different soil types on soil-plant systems remain poorly understood. Capsicum annuum L., a widely cultivated vegetable crop, was used as a model to systematically investigate the mechanisms of BPA uptake, translocation, and metabolic disruption in roots under varying soil types and BPA dose. Greenhouse experiments showed that BPA accumulation in pepper roots was highest in viscous soil, significantly greater than in sandy or loamy soils. When BPA dose exceeded 10 mg kg-1, root elongation and vitality were markedly suppressed, accompanied by enhanced antioxidant enzyme activity and elevated malondialdehyde content, indicating phytotoxicity was linked to increased oxidative stress. Integrated transcriptomic and metabolomic analyses identified 995 differentially expressed genes and revealed significant disruptions in root metabolic processes. BPA exposure altered the expression of genes related to the biosynthesis of phytohormone precursors and branched metabolites. Key pathways, including indole-3-acetic acid biosynthesis and phytohormone signal transduction, were significantly affected. These findings clarify the soil-dependent uptake and translocation patterns of BPA in pepper roots and provide important molecular insights into the plant's adaptive and defense responses to BPA-induced stress.

双酚A (BPA)对土壤的污染引起了相当大的生态和环境问题,特别是由于它对植物生长的潜在影响。然而,双酚a和不同土壤类型对土壤-植物系统的交互作用仍然知之甚少。以广泛种植的蔬菜作物辣椒(Capsicum annuum L.)为研究对象,系统研究了不同土壤类型和双酚a剂量下辣椒根系对双酚a的吸收、转运和代谢破坏机制。温室试验表明,粘质土壤中双酚a在辣椒根系中的积累量最高,显著高于砂质和壤土。当BPA剂量超过10 mg kg-1时,根伸长和活力明显受到抑制,同时抗氧化酶活性增强,丙二醛含量升高,表明植物毒性与氧化应激增加有关。综合转录组学和代谢组学分析鉴定了995个差异表达基因,并揭示了根代谢过程的显著中断。BPA暴露改变了植物激素前体和分支代谢物生物合成相关基因的表达。吲哚-3-乙酸生物合成和植物激素信号转导等关键通路受到显著影响。这些发现阐明了辣椒根部对BPA的土壤依赖吸收和转运模式,并为植物对BPA诱导的胁迫的适应和防御反应提供了重要的分子见解。
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引用次数: 0
Strigolactones Targeting Plant-Microbe Dialogues From Roots to Soil: Unlocking Pathways for Sustainable Agriculture. 从根到土壤的植物-微生物对话:解锁可持续农业的途径。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70787
Sudhir Kumar Upadhyay

Strigolactones (SLs) are phytohormones derived from carotenoids that influence various aspects of plant growth, development, and the ability of plants to respond to environmental changes and microbial interactions. Initially categorized as shoot branching inhibitors, SLs are now recognized as crucial rhizospheric signaling molecules that govern nutrient availability, hormonal control, and microbial interactions. Despite significant progress in SL biology, a cohesive synthesis connecting SL molecular signaling, rhizosphere communication, and stress tolerance remains fragmented, hindering their practical use in sustainable agriculture. A more comprehensive understanding of their synthesis process (D27-CCD7/8-MAX1-CLA cascade), their perception (D14-MAX2-SMXL module), and the impact of SMXL7 on chromatin has revealed significant implications on physiology. To enhance plant development under stress conditions, SLs drive auxin transport, regulate ABA-dependent stress signaling, influence the antagonistic effects of cytokinins, and coordinate gibberellin activity with the circadian rhythm. SLs augment arbuscular mycorrhizal colonization, stimulate nodulation, and attract plant growth-promoting rhizobacteria through chemotactic and metabolic interactions. Using GR24 and SL-conjugated nanomaterials enhances plant resistance to drought, salt, and metal stress. Modifying SL-transporters with CRISPR improves SL signaling and fosters beneficial symbiotic associations. The study is crucial because it underscores the importance of SLs in recruiting beneficial microorganisms and facilitating microbial-hormonal interactions. This review proposes a cohesive conceptual framework that integrates receptor specificity, rhizospheric sensing, and microbial response, beyond mere descriptive synthesis. It sets distinct research targets, such as receptor-specific SL-analogues, in situ sensing techniques, and tailored SL-responsive microbial consortia, to make biostimulation more precise and assist crops in withstanding climatic stress more effectively.

独角糖内酯(SLs)是从类胡萝卜素中提取的植物激素,影响植物生长发育的各个方面,以及植物对环境变化和微生物相互作用的反应能力。SLs最初被归类为茎枝分枝抑制剂,现在被认为是至关重要的根际信号分子,控制养分有效性、激素控制和微生物相互作用。尽管在SL生物学方面取得了重大进展,但连接SL分子信号、根际通讯和胁迫耐受性的内聚合成仍然是碎片化的,阻碍了它们在可持续农业中的实际应用。对它们的合成过程(D27-CCD7/8-MAX1-CLA级联)、感知(D14-MAX2-SMXL模块)以及SMXL7对染色质的影响的更全面的了解已经揭示了在生理学上的重要意义。为了促进植物在逆境条件下的发育,SLs驱动生长素运输,调节aba依赖的胁迫信号,影响细胞分裂素的拮抗作用,并协调赤霉素活性与昼夜节律。SLs增加丛枝菌根定植,刺激结瘤,并通过趋化和代谢相互作用吸引促进植物生长的根瘤菌。利用GR24和sl共轭纳米材料增强植物对干旱、盐和金属胁迫的抗性。用CRISPR修饰SL转运蛋白可改善SL信号传导并促进有益的共生关联。这项研究是至关重要的,因为它强调了SLs在招募有益微生物和促进微生物-激素相互作用方面的重要性。这篇综述提出了一个有凝聚力的概念框架,整合了受体特异性、根际感知和微生物反应,而不仅仅是描述性的合成。它设定了不同的研究目标,如受体特异性sl类似物、原位传感技术和量身定制的sl响应微生物联盟,以使生物刺激更精确,并帮助作物更有效地抵御气候胁迫。
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引用次数: 0
Integrated Hormonal and Transcriptomic Analysis Reveals Mechanisms of Tuberous Root Formation in Tetrastigma hemsleyanum. 综合激素和转录组学分析揭示赤条苋块根形成机制。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70746
Zhiyan Jiang, Sihao Wu, Haishun Xu, Siying Wang, Juan Xu, Ying Wang, Qinming Chen, Xiaoyu Lin, Zongsuo Liang, Xueqian Wu

Tetrastigma hemsleyanum Diels et Gilg (T. hemsleyanum) is a plant of considerable medicinal and economic value. However, the molecular mechanisms underlying its tuberous root formation remain poorly understood. To investigate the molecular basis of tuberous root formation, we analyzed hormonal metabolic levels, transcriptomic profiles, and root anatomical changes during this process. Using ultra-performance liquid chromatography-electrospray ionization tandem mass spectrometry, we quantitatively assessed the levels of eight plant hormones and their derivatives in the early stages of tuberous root formation and in adventitious roots. The results revealed significant fluctuations in hormone levels, with a marked upregulation of cytokinins (tZ, DZ, and IP) and the complete absence of gibberellin GA1 post-tuberous root formation. Jasmonic acid content decreased, while methyl jasmonate (MeJA) increased substantially. Exogenous application of MeJA further confirmed the role of the jasmonic acid pathway in tuberous root formation, underscoring the pivotal role of these hormones in root differentiation and expansion. Additionally, transcriptomic analysis identified significant alterations in biological processes associated with the cytoskeleton and cell wall during tuberous root formation. Anatomical observations indicated reduced lignification and a notable increase in vascular cambium and xylem parenchyma cells. In conclusion, this study provides valuable insights into the molecular mechanisms of tuberous root formation in T. hemsleyanum, emphasizing the critical role of plant hormones and offering new strategies for enhancing tuber growth and yield through hormonal regulation.

赤柱(Tetrastigma hemsleyanum Diels et Gilg)是一种具有相当药用和经济价值的植物。然而,其结节根形成的分子机制仍然知之甚少。为了研究块根形成的分子基础,我们分析了这一过程中的激素代谢水平、转录组谱和根解剖变化。采用超高效液相色谱-电喷雾串联质谱技术,定量评价了8种植物激素及其衍生物在块根形成早期和不定根中的含量。结果显示激素水平显著波动,细胞分裂素(tZ、DZ和IP)显著上调,而赤霉素GA1在结节根形成后完全缺失。茉莉酸含量降低,茉莉酸甲酯(MeJA)含量显著升高。外源应用MeJA进一步证实了茉莉酸途径在薯类根形成中的作用,强调了这些激素在根分化和扩张中的关键作用。此外,转录组学分析发现,在结节根形成过程中,与细胞骨架和细胞壁相关的生物过程发生了重大变化。解剖观察表明木质素化减少,维管形成层和木质部薄壁细胞显著增加。综上所述,本研究揭示了植物激素在块茎形成过程中的重要作用,并为通过激素调控促进块茎生长和产量提供了新的策略。
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引用次数: 0
Tomato RING Type E3 Ligases, SlRGLGs, Positively Regulate the Dehydration Stress Response. 番茄环型E3连接酶SlRGLGs积极调节脱水胁迫反应。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70773
Yeongil Bae, Chae Woo Lim, Dae Sung Kim, Sung Chul Lee

The ubiquitin-proteasomal protein degradation system is a key regulatory process mediating the dehydration stress response in plants, and RGLG proteins, a subfamily of the RING E3 ligases, are well known to modulate this response. In this study, we isolated four SlRGLG proteins (Solanum lycopersicum RING domain ligase) from tomato plants and characterized their functions at the molecular and biological levels. We found that these four SlRGLGs have the conserved VWA and RING domains and high amino acid sequence identities with RGLGs from Arabidopsis thaliana and pepper plants. The transcript levels of SlRGLGs were found to be responsive to several environmental stimuli, including dehydration, mannitol, and abscisic acid, which are believed to be associated with the presence of different stress-associated cis-regulatory elements in the respective promoter regions. Subcellular localization studies of SlRGLGs-GFP fusion proteins revealed distinct subcellular distribution patterns, and all four MBP-SlRGLGs recombinant proteins exhibited robust E3 ligase activities in vitro. To elucidate their biological roles in the dehydration stress response, we generated SlRGLGs-silenced tomato plants and SlRGLGs-overexpressing (OE) Arabidopsis plants. Notably, all SlRGLGs-silenced tomato plants were found to have dehydration-sensitive phenotypes with increased transpirational water loss and lipid peroxidation of cell membranes and decreased expression of dehydration stress-responsive genes. However, all SlRGLGs-OE Arabidopsis plants showed the dehydration-tolerant phenotypes, compared to control plants. Collectively, these findings indicate a positive role for all four SlRGLGs in the dehydration stress response of tomato.

泛素-蛋白酶体蛋白降解系统是介导植物脱水胁迫反应的关键调控过程,而RGLG蛋白是RING E3连接酶的一个亚家族,众所周知可以调节这一反应。本研究从番茄植物中分离到4个SlRGLG蛋白(Solanum lycopersicum RING domain ligase),并在分子和生物学水平上对其功能进行了表征。研究发现,这4个SlRGLGs与拟南芥和辣椒的RGLGs具有保守的VWA和RING结构域,且氨基酸序列具有较高的一致性。SlRGLGs的转录水平被发现对几种环境刺激有反应,包括脱水、甘露醇和脱落酸,这被认为与不同启动子区域中不同应激相关的顺式调控元件的存在有关。SlRGLGs-GFP融合蛋白的亚细胞定位研究揭示了不同的亚细胞分布模式,所有四种MBP-SlRGLGs重组蛋白在体外都表现出强大的E3连接酶活性。为了阐明它们在脱水胁迫反应中的生物学作用,我们培育了slrglgs沉默的番茄植株和slrglgs过表达(OE)的拟南芥植株。值得注意的是,所有slrglgs沉默的番茄植株都具有脱水敏感表型,蒸散水分损失和细胞膜脂质过氧化增加,脱水应激反应基因表达减少。然而,与对照植株相比,所有SlRGLGs-OE拟南芥植株均表现出耐脱水表型。综上所述,这些发现表明所有四种SlRGLGs在番茄脱水胁迫反应中都起着积极作用。
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引用次数: 0
Age-Dependent Plasticity in Hydraulics and Allocation of K, Si, and Starch in Moso Bamboo (Phyllostachys pubescens). 毛竹(Phyllostachys pubescens)水力学的年龄依赖性可塑性和钾、硅、淀粉的分配。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70745
Yan Xiang, Yasuhiro Utsumi, Shinya Koga, Tomonori Kume, Satoshi Nagai, Maojiao Yang

Moso bamboo (Phyllostachys pubescens), a fast-growing and potentially invasive species, exhibits culm-age heterogeneity in structure and physiology; however, its water-use strategies in relation to aging remain unclear. Thus, we aimed to examine age-related variations in hydraulic performance, vessel integrity, and nutrient allocation in bamboo culms aged 1-5 years. Sap flux density peaked in 2-year-old culms, possibly reflecting the maturation of conductive tissues. However, daily sap flow rates showed no significant age-dependent differences. Dye tracing and cryo-scanning electron microscopy revealed consistent axial and radial vessel continuity and low embolism frequency across all age groups, with a relative loss of potential conductivity of approximately 10%. Elemental analysis showed reduced K concentration and delayed Si accumulation in the vessel sap with age, suggesting a physiological shift from osmotic regulation to structural reinforcement. Starch began accumulating in the third year and peaked at age four, indicating a physiological transition from resource consumption to energy storage. These coordinated transitions support sustained water transport across ages and may enhance resilience under drought and interspecific competition. Our findings revealed functional plasticity in water use and resource allocation during culm development, highlighting the physiological mechanisms that may underlie the ecological success and invasive potential of Moso bamboo.

毛竹(Phyllostachys pubescens)是一种快速生长的潜在入侵物种,在结构和生理上表现出竿龄的异质性;然而,其与老龄化有关的用水策略仍不清楚。因此,我们的目的是研究1-5岁竹竿在水力性能、容器完整性和营养分配方面的年龄相关变化。汁液通量密度在2岁茎秆时达到峰值,可能反映了导电组织的成熟。然而,日液流率没有明显的年龄依赖性差异。染料示踪和冷冻扫描电镜显示,在所有年龄组中,轴向和径向血管连续性一致,栓塞频率低,潜在电导率的相对损失约为10%。元素分析显示,随着年龄的增长,血管汁液中K浓度降低,Si积累延迟,表明从渗透调节到结构强化的生理转变。淀粉在第三年开始积累,并在四岁时达到顶峰,这表明从资源消耗到能量储存的生理转变。这些协调的过渡支持跨时代的持续水运,并可能增强在干旱和种间竞争下的复原力。研究结果揭示了毛竹在发育过程中水分利用和资源分配的功能可塑性,揭示了毛竹生态成功和入侵潜力的生理机制。
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引用次数: 0
Correction to "The Expanded LYR Motif-Containing Protein Family in Archaeplastida". 对“古塑菌中扩展的LYR基序含蛋白家族”的更正。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70785
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引用次数: 0
Phosphorus Deficiency Affects Memory-Mediated Recovery From Recurrent Water Stress in Drought-Sensitive Soybean. 缺磷影响干旱敏感大豆在反复水分胁迫下记忆介导的恢复。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70772
Isadora Rodrigues Medina Santana, Guilherme Henrique da Rocha, Gabriela Píccolo Maitan-Alfenas, Eduardo Gusmão Pereira

Phosphorus (P) deficiency and water deficit are major constraints to soybean yield worldwide. While their individual impacts are well established, little is known about how P deficiency modulates soybean recovery from recurrent water stress. This study evaluated the effects of P deficiency on the recovery capacity of two soybean cultivars, contrasting in drought sensitivity, during the grain-filling stage. Plants were grown under either high P availability or P deficiency and subjected to different irrigation regimes: well-watered (WW), severe water deficit at R5 (WS-R5), and moderate deficit at V5 followed by severe deficit at R5 (WS-V5 + R5). The experiment followed a randomized complete block design in a 2 × 3 factorial scheme. Under water stress, P deficiency delayed stomatal resistance, extending photosynthetic decline in both cultivars. However, recovery of photosynthetic rate and stomatal conductance was faster under P deficiency than under high P supply. In the sensitive cultivar, P deficiency enhanced memory-mediated recovery of photosynthesis only after two stress cycles, with compensatory increases in mesophyll conductance, decreasing mesophyll limitations and favoring recovery. In contrast, the tolerant cultivar showed stable photosynthetic responses regardless of P level, with similar recovery in light saturation and photorespiration. Grain composition was affected by P deficiency in both cultivars, with lower protein concentration and increased oil content, particularly of unsaturated fatty acids. These results indicate that P deficiency alters physiological adjustments in soybean genotypes sensitive to water deficit, influencing their capacity to recover from recurrent drought stress and affecting grain quality.

磷(P)缺乏和水分亏缺是制约大豆产量的主要因素。虽然它们各自的影响已经确定,但人们对缺磷如何调节大豆从周期性水分胁迫中恢复知之甚少。本研究评价了两种大豆品种在灌浆期干旱敏感性不同,缺磷对其恢复能力的影响。植物在高磷有效度和缺磷条件下生长,并进行不同的灌溉制度:水分充足(WW), R5期严重亏水(WS-R5), V5期中度亏水,R5期严重亏水(WS-V5 + R5)。试验采用2 × 3因子随机完全区组设计。在水分胁迫下,缺磷延缓了两个品种的气孔抗性,延长了光合作用下降的时间。但缺磷条件下光合速率和气孔导度的恢复速度比高磷条件下快。在敏感品种中,缺磷只在两个胁迫循环后增强了记忆介导的光合恢复,叶肉导度代偿性增加,叶肉限制减少,有利于恢复。相比之下,耐磷品种在不同磷水平下均表现出稳定的光合响应,光饱和度和光呼吸恢复相似。缺磷对籽粒组成均有影响,籽粒蛋白质含量降低,籽粒含油量增加,尤其是不饱和脂肪酸含量增加。上述结果表明,缺磷会改变对水分亏缺敏感的大豆基因型的生理调节,影响其从反复干旱胁迫中恢复的能力,并影响籽粒品质。
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引用次数: 0
Integrated DNA Methylome and Transcriptome Analysis Revealed the Epigenetic Regulation of Pumpkin's Defense Response to Powdery Mildew. 整合DNA甲基组和转录组分析揭示南瓜对白粉病防御反应的表观遗传调控。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70788
Long Li, Fengmei Li, Hui Zhang, Ganxiyu Cheng, Shuxia Zhang, Min Wei, Jian Cui

Powdery mildew (PM) is one of the major diseases in pumpkin cultivation. However, the molecular mechanism of epigenetic regulation in pumpkin defense against PM is still unclear. This study integrated physiological, methylome, and transcriptome analyses of Cucurbita moschata leaves infected with Phytophthora xanthii. PM infection significantly increased the MDA content and CAT, POD, and SOD activities in pumpkin leaves, while reducing protein and chlorophyll content. Global DNA methylation decreased in P. xanthii-infected plants, with prominent hypomethylation at CHH contexts in promoter regions. The analysis of methylome and transcriptome identified 2668 differentially methylated genes (DMGs) and 2356 differentially expressed genes (DEGs), respectively. GO functional annotation and KEGG pathway enrichment analyses revealed that DMGs and DEGs were primarily involved in antioxidant, photosynthesis, and metabolism. A correlation analysis between promoter DNA methylation level and gene expression identified 160 negatively correlated genes, which included members involved in photosynthesis, lipid metabolism, antioxidant responses, transcription factors, and methyltransferases. We further confirmed the function of CmERF098 as a nuclear transcription factor. RT-qPCR analysis revealed that the CmERF098 gene responds to both PM stress and MeJA treatment. In C. moschata, overexpression of CmERF098 conferred resistance to PM by reducing MDA content while enhancing POD activity as well as chlorophyll and protein content. Additionally, overexpression of CmERF098 suppressed the JA signaling pathway via downregulation of CmMYC2 and CmJAR1. These findings provide novel insights into the molecular mechanisms underlying epigenetic regulation and provide new candidates to incorporate in breeding for disease-resistant pumpkins.

白粉病是南瓜栽培中的主要病害之一。然而,南瓜抗PM的表观遗传调控分子机制尚不清楚。本研究综合了黄瓜叶片感染疫霉的生理、甲基组和转录组分析。PM侵染显著提高了南瓜叶片MDA含量和CAT、POD、SOD活性,降低了蛋白质和叶绿素含量。黄原螺旋体感染植物的DNA甲基化降低,在启动子区域的CHH环境中存在显著的低甲基化。甲基组和转录组分析分别鉴定出2668个差异甲基化基因(dmg)和2356个差异表达基因(deg)。GO功能注释和KEGG途径富集分析显示,dmg和DEGs主要参与抗氧化、光合作用和代谢。启动子DNA甲基化水平与基因表达的相关性分析鉴定出160个负相关基因,包括参与光合作用、脂质代谢、抗氧化反应、转录因子和甲基转移酶的成员。我们进一步证实了CmERF098作为核转录因子的功能。RT-qPCR分析显示,CmERF098基因对PM胁迫和MeJA处理均有响应。CmERF098的过表达通过降低MDA含量,提高POD活性以及叶绿素和蛋白质含量来增强对PM的抗性。此外,CmERF098的过表达通过下调CmMYC2和CmJAR1来抑制JA信号通路。这些发现为表观遗传调控的分子机制提供了新的见解,并为抗病南瓜的育种提供了新的候选材料。
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引用次数: 0
Metabolome and Transcriptome Profiling of Chicory Roots Provide Insights Into Laticifer Development and Specialized Metabolism. 菊苣根的代谢组和转录组分析为乳汁管发育和特殊代谢提供了新的见解。
IF 3.6 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-01 DOI: 10.1111/ppl.70778
Khabat Vahabi, Gerd U Balcke, Johanna C Hakkert, Ingrid M van der Meer, Benedikt Athmer, Alain Tissier

Chicory roots produce inulin, a dietary fiber, as well as large quantities of bitter sesquiterpene lactones (STLs), which have valuable biological activities. In an effort to understand the compartmentalization of metabolism within chicory roots and the molecular basis of the development of laticifers that produce the chicory latex, we performed metabolomics and transcriptomics profiling of different tissues of chicory roots. Gas chromatography coupled to mass spectrometry (GC-MS) and liquid chromatography coupled to mass spectrometry (LC-MS) identified a total of 21,437 features, of which 135 were differentially abundant between cell types. Further analysis indicated that the major STLs accumulated primarily in the latex. Gene expression of known STL pathway genes indicates a compartmentalization of the biosynthesis across multiple tissues, with implications regarding the trafficking of pathway intermediates. Phytohormone measurements and gene expression analysis point to a major role for jasmonate signaling in the development and differentiation of laticifers. Furthermore, inulin accumulates mostly outside the laticifers, but expression of inulin metabolic genes also points to a complex distribution and trafficking of inulin or inulin precursors across different root compartments. Altogether, the data presented here constitute a unique resource to investigate several biological processes in chicory roots, including laticifer development, STL biosynthesis and transport, and inulin biosynthesis regulation.

菊苣根可产生膳食纤维菊粉和大量具有重要生物活性的苦倍半萜内酯(STLs)。为了了解菊苣根内代谢的区区化以及产生菊苣乳汁管发育的分子基础,我们对菊苣根的不同组织进行了代谢组学和转录组学分析。气相色谱-质谱联用(GC-MS)和液相色谱-质谱联用(LC-MS)共鉴定出21437个特征,其中135个特征在细胞类型之间存在差异。进一步分析表明,主要stl主要积聚在乳胶中。已知STL通路基因的基因表达表明了跨多个组织的生物合成的区隔化,这与通路中间体的运输有关。植物激素测量和基因表达分析表明,茉莉酸信号在乳汁管的发育和分化中起着重要作用。此外,菊粉主要在乳汁管外积累,但菊粉代谢基因的表达也表明菊粉或菊粉前体在不同根室的复杂分布和运输。总之,本文提供的数据构成了研究菊苣根中几种生物过程的独特资源,包括乳汁管发育、STL生物合成和运输以及菊粉生物合成调控。
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Physiologia plantarum
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