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Data-driven resources and computational tools in non-model plant species.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70133
Nathaniel R Street
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引用次数: 0
New insights into rice phenology: discovering the effect of insolation on heading response.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70132
Ju-Hee Kim, So-Hye Jo, Ji-Hyeon Moon, Seo-Yeong Yang, Jae-Kyeong Baek, Yeong-Seo Song, Ji-Young Shon, Hyeon-Seok Lee

Precise growth management is required for climate-smart and sustainable crop production in response to climate change, with the heading stage being the most important. Research on the control of heading in rice (Oryza sativa) has mainly focused on day length and temperature; however, research on the effects of insolation is limited. Therefore, this study analyzed the differences in rice growth and heading responses under different light intensity and temperature conditions. Five early-maturing and seven medium-late-maturing rice varieties were used for each japonica heading ecology type. Our results showed that leaf age development, an indirect measure of rice phenological development, was inhibited under low light intensity and low-temperature conditions. Accordingly, the heading date was also delayed by approximately 18 days at low temperatures and 21 days at low light intensity, with no difference among ecotypes. We also found an interaction between temperature and light intensity, with the light intensity-mediated delay in heading date being affected more by high temperatures. This study demonstrated that light intensity and temperature have a major effect on heading date variation, suggesting that the impact of insolation must be considered for the accurate prediction of heading stage variation. These results could shed new light on rice phenology research and contribute to the implementation of precision agriculture.

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引用次数: 0
BBX22 enhances the accumulation of antioxidants to inhibit DNA damage and promotes DNA repair under high UV-B. BBX22增强抗氧化剂的积累,抑制DNA损伤,促进高UV-B下的DNA修复。
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70038
Nikhil Job, Shubhi Dwivedi, Maneesh Lingwan, Sourav Datta

Under changing climatic conditions, plant exposure to high-intensity UV-B can be a potential threat to plant health and all plant-derived human requirements, including food. It's crucial to understand how plants respond to high UV-B radiation so that proper measures can be taken to enhance tolerance towards high UV-B stress. We found that BBX22, a B-box protein-coding gene, is strongly induced within one hour of exposure to high-intensity UV-B. Our metabolomics data indicated that BBX22 promotes the accumulation of antioxidants like ascorbic acid and proline. These antioxidants play a vital role in shielding plants exposed to high UV-B from the detrimental effects of Reactive Oxygen Species (ROS), including DNA damage. Additionally, BBX22 promotes DNA damage repair by inducing the expression of DNA repair genes like UVR1 and UVR3. BBX22 directly binds to the promoter of UVR1 to regulate its expression. Furthermore, BBX22 indirectly induces the expression of UVR1 and UVR3 by enhancing the binding of HY5 to their promoters. Together, these results suggest a multi-pronged role of BBX22 in protection against high-intensity UV-B. Enhancing BBX22 levels or its orthologs in different plant species can potentially offer DNA damage protection and tolerance against intense UV radiation.

在不断变化的气候条件下,植物暴露于高强度UV-B可能对植物健康和包括食物在内的所有植物源性人类需求构成潜在威胁。了解植物对高UV-B辐射的反应是至关重要的,这样就可以采取适当的措施来提高对高UV-B胁迫的耐受性。我们发现B-box蛋白编码基因BBX22在高强度UV-B照射1小时内被强烈诱导。我们的代谢组学数据表明,BBX22促进抗坏血酸和脯氨酸等抗氧化剂的积累。这些抗氧化剂在保护暴露于高UV-B的植物免受活性氧(ROS)的有害影响(包括DNA损伤)方面起着至关重要的作用。此外,BBX22通过诱导DNA修复基因如UVR1和UVR3的表达来促进DNA损伤修复。BBX22直接结合UVR1的启动子调控其表达。此外,BBX22通过增强HY5与其启动子的结合,间接诱导了UVR1和UVR3的表达。总之,这些结果表明BBX22在防止高强度UV-B方面具有多管齐下的作用。提高BBX22或其同源物在不同植物物种中的水平可能提供DNA损伤保护和对强紫外线辐射的耐受性。
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引用次数: 0
Cell size has pervasive effects on the functional composition and morphology of leaves: a case study in Rhododendron (Ericaceae). 细胞大小对叶片的功能组成和形态具有普遍影响:杜鹃花(杜鹃花科)案例研究。
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70054
Arezoo Dastpak, Monica Williams, Sally Perkins, John A Perkins, Charles Horn, Patrick Thompson, Connor Ryan, Juliana Medeiros, Yi-Dong An, Guo-Feng Jiang, Kevin A Simonin, Adam B Roddy

The leaf economics spectrum (LES) characterizes a tradeoff between building a leaf for durability versus for energy capture and gas exchange, with allocation to leaf dry mass per projected surface area (LMA) being a key trait underlying this tradeoff. However, regardless of the biomass supporting the leaf, high rates of gas exchange are typically accomplished by small, densely packed stomata on the leaf surface, which is enabled by smaller genome sizes. Here, we investigate how variation in genome size-cell size allometry interacts with variation in biomass allocation (i.e. LMA) to influence the maximum surface conductance to CO2 and the rate of resource turnover as measured by leaf water residence time. We sampled both evergreen and deciduous Rhododendron (Ericaceae) taxa from wild populations and botanical gardens, including naturally occurring putative hybrids and artificially generated hybrids. We measured genome size, anatomical traits related to cell sizes, and morphological traits related to water content and dry mass allocation. Consistent with the LES, higher LMA was associated with slower water residence times, and LMA was strongly associated with leaf thickness. Although anatomical and morphological traits varied orthogonally to each other, cell size had a pervasive impact on leaf functional anatomy: for a given leaf thickness, reducing cell size elevated the leaf surface conductance and shortened the mean water residence time. These analyses clarify how anatomical traits related to genome size-cell size allometry can influence leaf function independently of morphological traits related to leaf longevity and durability.

叶片经济谱(LES)表征了叶片耐久性与能量捕获和气体交换之间的权衡,分配给每预计表面积(LMA)的叶片干质量是这种权衡的关键特征。然而,无论支持叶片的生物量如何,高速率的气体交换通常是由叶片表面小而密集的气孔完成的,这是由较小的基因组大小实现的。在这里,我们研究了基因组大小-细胞大小异速测量的变化如何与生物量分配(即LMA)的变化相互作用,以影响对CO2的最大表面电导和通过叶片水分停留时间测量的资源周转率。对常绿和落叶杜鹃花(杜鹃花科)的野生种群和植物园进行了取样,包括自然发生的推定杂交和人工产生的杂交。我们测量了基因组大小,与细胞大小相关的解剖性状,以及与含水量和干质量分配相关的形态性状。LMA越大,水分停留时间越短,LMA与叶片厚度密切相关。尽管解剖和形态特征呈正交变化,但细胞大小对叶片功能解剖的影响是普遍存在的:在一定叶厚的情况下,细胞大小的减小提高了叶片表面电导,缩短了平均水分停留时间。这些分析阐明了与基因组大小-细胞大小异速测量相关的解剖性状如何独立于与叶片寿命和耐久性相关的形态性状影响叶片功能。
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引用次数: 0
Functional characterisation of WRKY transcription factor CrWRKY48 involved in regulating seed abortion of Ponkan (Citrus reticulata). 参与柑桔种子败育调控的WRKY转录因子CrWRKY48的功能特征
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70048
Liqing Lu, Xiong Gao, Yongjie Qi, Zixian Zha, Zhenghui Gao, Na Ma, Juxun Wu, Haijian Yang, Hualin Yi

Citrus fruits are one of the most important fruits in the world, and their seedless character is favored by consumers. WRKY is a plant-specific transcription factor family involved in all aspects of plant growth and development. However, the molecular mechanism of seedless fruit formation in citrus and the role of the WRKY gene family in seed abortion are still poorly understood. In this study, we identified 47 WRKY family genes in the citrus fruit Citrus reticulata and comprehensively characterized the WRKY gene family through gene structure and evolutionary relationships. The expression patterns and protein interaction networks of the WRKY gene family were analyzed based on citrus seed abortion transcriptome data, and several WRKY genes that may be involved in the seed abortion regulation were excavated. Furthermore, CrWRKY48 was verified to regulate seed abortion positively in Arabidopsis thaliana, and the rate of seed abortion caused by overexpression of CrWRKY48 reached 45.48%. Using terminal deoxynucleotidyl transferase-mediated dUTP nick-end labelling assays, DNA affinity purification sequencing and yeast-one-hybrid assays, we found that CrWRKY48 activated excessive programmed cell death by regulating the expression of programmed cell death-related genes such as SOBIR1. Our results show the potential regulation of the WRKY gene family for citrus seed abortion and provide novel insights into the role of CrWRKY48 in mediating citrus seed abortion by activating programmed cell death.

柑橘类水果是世界上最重要的水果之一,其无籽特性受到消费者的青睐。WRKY是一个植物特异性转录因子家族,参与植物生长发育的各个方面。然而,柑橘无籽果实形成的分子机制以及WRKY基因家族在种子败育中的作用尚不清楚。在本研究中,我们鉴定了柑橘类水果柑橘中的47个WRKY家族基因,并通过基因结构和进化关系对WRKY基因家族进行了全面表征。基于柑橘种子败育转录组数据,分析了WRKY基因家族的表达模式和蛋白相互作用网络,挖掘了几个可能参与种子败育调控的WRKY基因。进一步验证了CrWRKY48在拟南芥中正调控种子败育,过表达CrWRKY48导致的种子败育率达到45.48%。通过末端脱氧核苷酸转移酶介导的dUTP镍端标记实验、DNA亲和纯化测序和酵母单杂交实验,我们发现CrWRKY48通过调节程序性细胞死亡相关基因(如SOBIR1)的表达来激活过度的程序性细胞死亡。我们的研究结果显示WRKY基因家族对柑橘种子流产的潜在调控,并为CrWRKY48通过激活程序性细胞死亡介导柑橘种子流产的作用提供了新的见解。
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引用次数: 0
Identification of the MAP4K gene family reveals GhMAP4K13 regulates drought and salt stress tolerance in cotton. MAP4K基因家族的鉴定揭示了GhMAP4K13调控棉花的抗旱性和耐盐性。
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70031
Qing Zeng, Fanjia Peng, Junjuan Wang, Shuai Wang, Xuke Lu, Allah Bakhsh, Yan Li, Bobokhonova Zebinisso Qaraevna, Wuwei Ye, Zujun Yin

Mitogen-activated protein kinase kinase kinase kinases (MAP4Ks) are a class of highly conserved serine/threonine-protein kinases in eukaryotes. They participate in the typical MAPK cascade system and various signal transduction pathways regulating biological processes in plants, during stressful conditions. To date, genome-wide identification of MAP4Ks in cotton has not been reported. In this study, 77 MAP4K genes were identified in four Gossypium species. Protein characteristics, gene structures, conserved motifs and gene expression analysis were carried out. Genome-wide or fragment duplication has played an important role in the expansion of the GhMAP4K. Promoter cis-acting elements and expression patterns indicated that GhMAP4Ks are related to plant hormones (ABA, MeJA, GA, IAA, SA) and various stresses (drought, hypothermia and wound). Overexpressing GhMAP4K13 in Arabidopsis showed higher stem length in response to drought and salt stress. The wilting degree in virus-induced GhMAP4K13 gene silenced plants was substantially greater than wild type plants under drought and salt stress. Transcriptomic analysis showed that most differentially expressed genes were involved in the MAPK signaling pathway, carbon metabolism and porphyrin metabolism. Additionally, transgenic Arabidopsis and VIGS cotton showed that GhMAP4K13 was positively responsive to drought and salt stresses. This study will play an important role in understanding the function of the MAP4K gene family in response to abiotic stress in cotton.

丝裂原活化蛋白激酶(MAP4Ks)是真核生物中高度保守的丝氨酸/苏氨酸蛋白激酶。它们参与典型的MAPK级联系统和各种信号转导途径,在逆境条件下调节植物的生物过程。迄今为止,棉花中MAP4Ks的全基因组鉴定还没有报道。本研究在4种棉属植物中鉴定出77个MAP4K基因。进行了蛋白特性、基因结构、保守基序和基因表达分析。全基因组或片段复制在GhMAP4K的扩展中发挥了重要作用。启动子顺式作用元件和表达模式表明,GhMAP4Ks与植物激素(ABA、MeJA、GA、IAA、SA)和各种胁迫(干旱、低温和创伤)有关。过表达GhMAP4K13的拟南芥在干旱和盐胁迫下表现出更高的茎长。在干旱和盐胁迫下,病毒诱导的GhMAP4K13基因沉默植株的萎蔫程度明显大于野生型植株。转录组学分析显示,大多数差异表达基因与MAPK信号通路、碳代谢和卟啉代谢有关。此外,转基因拟南芥和VIGS棉花表明,GhMAP4K13对干旱和盐胁迫有正响应。本研究将对了解MAP4K基因家族在棉花非生物胁迫响应中的作用具有重要意义。
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引用次数: 0
Integrated physiological, transcriptomic and metabolomic analyses reveal potential mechanisms of potato tuber dormancy release.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70081
Hao Liu, Hongyang Wang, Youhong Feng, Yan Yang, Cai Feng, Junhua Li, Qamar Ur Zaman, Yunxin Kong, Shah Fahad, Gang Deng

Regulating potato tuber dormancy is crucial for crop productivity and food security. We conducted the first comprehensive physiological, transcriptomic, and metabolomic investigations of two varieties of long and short dormant potato tubers in order to clarify the mechanisms of dormancy release. In the current study, three different dormant stages of UGT (ungerminated tubers), MGT (minimally germinated tubers), and GT (germinated tubers) were obtained by treatment with the germination promoter gibberellin A3 and the germination inhibitor chlorpropham. The results revealed that the contents of reducing reducing sugar, sucrase, glutamine synthetase, and nitrate reductase were increased in the dormancy release stages, whereas the contents of sucrose and starch were decreased, leading to a change in the phenotype of the potato tuber bud eyes. According to transcriptomic and metabolomic investigations, four metabolomic pathways were impacted by the dormancy release process. Zeatin biosynthesis was identified in both potato varieties in the dormant release stage (trans-zeatin riboside, isopentenyl adenosine, 5'-methylthioadenosine, IPT, CYP735A, CKX, and UGT73C); glutathione metabolism was identified in short-dormant potato varieties ((5-L-Glutamyl)-L-amino acid, oxidized glutathione, GPX, IDH1, GGT1_5, and GST); and the pentose phosphate pathway (D-Xylulose 5-phosphate, ribose 1-phosphate, PGD, and RPIA) and the phenylpropanoid biosynthesis (caffeic acid, sinapine, CYP98A, and CSE) were identified in long-dormant potato varieties. In conclusion, the four pathways mentioned above involve DEGs and DEMs that are crucial to the control of tuber dormancy release. This work offers a theoretical foundation and useful recommendations for potato tuber quality improvement and molecular breeding.

{"title":"Integrated physiological, transcriptomic and metabolomic analyses reveal potential mechanisms of potato tuber dormancy release.","authors":"Hao Liu, Hongyang Wang, Youhong Feng, Yan Yang, Cai Feng, Junhua Li, Qamar Ur Zaman, Yunxin Kong, Shah Fahad, Gang Deng","doi":"10.1111/ppl.70081","DOIUrl":"https://doi.org/10.1111/ppl.70081","url":null,"abstract":"<p><p>Regulating potato tuber dormancy is crucial for crop productivity and food security. We conducted the first comprehensive physiological, transcriptomic, and metabolomic investigations of two varieties of long and short dormant potato tubers in order to clarify the mechanisms of dormancy release. In the current study, three different dormant stages of UGT (ungerminated tubers), MGT (minimally germinated tubers), and GT (germinated tubers) were obtained by treatment with the germination promoter gibberellin A<sub>3</sub> and the germination inhibitor chlorpropham. The results revealed that the contents of reducing reducing sugar, sucrase, glutamine synthetase, and nitrate reductase were increased in the dormancy release stages, whereas the contents of sucrose and starch were decreased, leading to a change in the phenotype of the potato tuber bud eyes. According to transcriptomic and metabolomic investigations, four metabolomic pathways were impacted by the dormancy release process. Zeatin biosynthesis was identified in both potato varieties in the dormant release stage (trans-zeatin riboside, isopentenyl adenosine, 5'-methylthioadenosine, IPT, CYP735A, CKX, and UGT73C); glutathione metabolism was identified in short-dormant potato varieties ((5-L-Glutamyl)-L-amino acid, oxidized glutathione, GPX, IDH1, GGT1_5, and GST); and the pentose phosphate pathway (D-Xylulose 5-phosphate, ribose 1-phosphate, PGD, and RPIA) and the phenylpropanoid biosynthesis (caffeic acid, sinapine, CYP98A, and CSE) were identified in long-dormant potato varieties. In conclusion, the four pathways mentioned above involve DEGs and DEMs that are crucial to the control of tuber dormancy release. This work offers a theoretical foundation and useful recommendations for potato tuber quality improvement and molecular breeding.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70081"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143047575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spectral unmixing of hyperspectral images revealed pine wilt disease sensitive endmembers.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70090
Seok Won Jeong, Il Hwan Lee, Yang-Gil Kim, Kyu-Suk Kang, Donghwan Shim, Vaughan Hurry, Alexander G Ivanov, Youn-Il Park

Throughout the entire cycle of leaf phenological events, leaf colour undergoes changes that are influenced by either abiotic stress or biotic infection. These changes in colouration are closely linked to the quantity and quality of photosynthetic pigments, which directly impact the primary productivity of plants. Therefore, monitoring and quantifying leaf colouration changes are crucial for distinguishing damage caused by pine wilt nematodes from natural tree senescence. In this study, a hyperspectral camera sensor was employed for the non-invasive and non-destructive evaluation of needle colour changes in coniferous trees grown in field tests. Three distinct needle colour variations of six coniferous tree species were selected and monitored using a hyperspectral sensor: those displaying seasonal autumn colours, undergoing nematode-infected necrosis processes, and experiencing natural death. To mitigate the inherently mixed spectral properties of hyperspectral data, endmembers were extracted from individual images using the Purity Pixel Index algorithm under the assumption of linear mixing of endmembers. From a total of 1,321 endmembers extracted from 378 hyperspectral images of six pine species, eight endmembers were ultimately chosen to reconstruct hyperspectral images and generate abundance maps. Among these eight endmembers, four represent varying levels of photosynthetic pigment contents-ranging from very low to high. Consequently, these coniferous endmembers hold promise for assessing seasonal leaf phenology and the extent of damage in pine trees infected by pine wilt nematodes. This comprehensive approach underscores the effectiveness of spectral unmixing of hyperspectral images in advancing precision forestry through meticulous coniferous needle trait analysis.

{"title":"Spectral unmixing of hyperspectral images revealed pine wilt disease sensitive endmembers.","authors":"Seok Won Jeong, Il Hwan Lee, Yang-Gil Kim, Kyu-Suk Kang, Donghwan Shim, Vaughan Hurry, Alexander G Ivanov, Youn-Il Park","doi":"10.1111/ppl.70090","DOIUrl":"https://doi.org/10.1111/ppl.70090","url":null,"abstract":"<p><p>Throughout the entire cycle of leaf phenological events, leaf colour undergoes changes that are influenced by either abiotic stress or biotic infection. These changes in colouration are closely linked to the quantity and quality of photosynthetic pigments, which directly impact the primary productivity of plants. Therefore, monitoring and quantifying leaf colouration changes are crucial for distinguishing damage caused by pine wilt nematodes from natural tree senescence. In this study, a hyperspectral camera sensor was employed for the non-invasive and non-destructive evaluation of needle colour changes in coniferous trees grown in field tests. Three distinct needle colour variations of six coniferous tree species were selected and monitored using a hyperspectral sensor: those displaying seasonal autumn colours, undergoing nematode-infected necrosis processes, and experiencing natural death. To mitigate the inherently mixed spectral properties of hyperspectral data, endmembers were extracted from individual images using the Purity Pixel Index algorithm under the assumption of linear mixing of endmembers. From a total of 1,321 endmembers extracted from 378 hyperspectral images of six pine species, eight endmembers were ultimately chosen to reconstruct hyperspectral images and generate abundance maps. Among these eight endmembers, four represent varying levels of photosynthetic pigment contents-ranging from very low to high. Consequently, these coniferous endmembers hold promise for assessing seasonal leaf phenology and the extent of damage in pine trees infected by pine wilt nematodes. This comprehensive approach underscores the effectiveness of spectral unmixing of hyperspectral images in advancing precision forestry through meticulous coniferous needle trait analysis.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70090"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143080854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bicarbonate use reduces the photorespiration in Ottelia alismoides adapting to the CO2-fluctuated aquatic systems.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70085
Pengpeng Li, Zuying Liao, Bo Zhang, Liyan Yin, Wei Li, Hong Sheng Jiang

Underwater CO2 concentration fluctuates extremely in natural water bodies. Under low CO2, the unique CO2 concentrating mechanism in aquatic plants, bicarbonate use, can suppress photorespiration. However, it remains unknown (1) to what extent bicarbonate use reduces photorespiration, (2) how exactly photorespiration varies between bicarbonate-users and CO2-obligate users under CO2-fluctuated environments, and (3) what are differences in Rubisco characteristics between these two types of aquatic plants. In the present study, the bicarbonate user Ottelia alismoides and its phylogenetically close CO2-obligate user Blyxa japonica were chosen to answer these questions. The results showed that bicarbonate use saved ~13% carbon loss under low CO2 via decreasing photorespiration in O. alismoides. Through bicarbonate use, the photorespiration of O. alismoides was kept stable both under high and low underwater CO2 concentrations, while the photorespiration significantly increased in the CO2-obligate user B. japonica under low CO2. However, B. japonica showed a significantly higher photosynthesis rate than O. alsimoides when CO2 was sufficient. These differences could be related to the kinetic characteristics of Rubisco showing a higher carboxylation turnover rate (Kcat) in B. japonica, and the similar affinity to CO2 (Kc) and specificity factor (Sc/o) in these two species that might be determined by the variation of six amino acid residuals in Rubisco large subunit sequences, especially the site 281 (A vs. S) and 282 (H vs. F). All these differences in photorespiration and kinetic characteristics of Rubisco could explain the distribution patterns of bicarbonate users and CO2-obligate users in the field.

{"title":"Bicarbonate use reduces the photorespiration in Ottelia alismoides adapting to the CO<sub>2</sub>-fluctuated aquatic systems.","authors":"Pengpeng Li, Zuying Liao, Bo Zhang, Liyan Yin, Wei Li, Hong Sheng Jiang","doi":"10.1111/ppl.70085","DOIUrl":"https://doi.org/10.1111/ppl.70085","url":null,"abstract":"<p><p>Underwater CO<sub>2</sub> concentration fluctuates extremely in natural water bodies. Under low CO<sub>2</sub>, the unique CO<sub>2</sub> concentrating mechanism in aquatic plants, bicarbonate use, can suppress photorespiration. However, it remains unknown (1) to what extent bicarbonate use reduces photorespiration, (2) how exactly photorespiration varies between bicarbonate-users and CO<sub>2</sub>-obligate users under CO<sub>2</sub>-fluctuated environments, and (3) what are differences in Rubisco characteristics between these two types of aquatic plants. In the present study, the bicarbonate user Ottelia alismoides and its phylogenetically close CO<sub>2</sub>-obligate user Blyxa japonica were chosen to answer these questions. The results showed that bicarbonate use saved ~13% carbon loss under low CO<sub>2</sub> via decreasing photorespiration in O. alismoides. Through bicarbonate use, the photorespiration of O. alismoides was kept stable both under high and low underwater CO<sub>2</sub> concentrations, while the photorespiration significantly increased in the CO<sub>2</sub>-obligate user B. japonica under low CO<sub>2</sub>. However, B. japonica showed a significantly higher photosynthesis rate than O. alsimoides when CO<sub>2</sub> was sufficient. These differences could be related to the kinetic characteristics of Rubisco showing a higher carboxylation turnover rate (Kcat) in B. japonica, and the similar affinity to CO<sub>2</sub> (Kc) and specificity factor (Sc/o) in these two species that might be determined by the variation of six amino acid residuals in Rubisco large subunit sequences, especially the site 281 (A vs. S) and 282 (H vs. F). All these differences in photorespiration and kinetic characteristics of Rubisco could explain the distribution patterns of bicarbonate users and CO<sub>2</sub>-obligate users in the field.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70085"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143060183","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mitigating Oxidative Browning in Litchi by Regulating Biochemical Markers and Targeted Gene expression via Exogenous Nitric Oxide.
IF 5.4 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-01 DOI: 10.1111/ppl.70107
Khushboo Azam, Hidayatullah Mir, Mohammed Wasim Siddiqui, Tushar Ranjan, Fozia Homa, Nusrat Perveen, Duniya Ram Singh, Manzer H Siddiqui

Nitric oxide has been shown to influence oxidative metabolism in plants, enhancing their resilience to various biotic and abiotic stresses. Post-harvest oxidative stress is a key factor leading to quality deterioration in litchi (Litchi chinensis Sonn.) fruit, with visible symptoms that significantly reduce shelf life and consumer acceptability. Therefore, the effect of exogenous sodium nitroprusside (SNP; 1.0 mM and 2.0 mM) on litchi (cv. Purbi) fruit was examined during storage at 7 ± 1°C. Different biochemical changes related to post-harvest quality and pericarp browning of litchi were evaluated. The results suggested that SNP (2.0 mM) was significantly effective in reducing weight loss, the pericarp browning index and decay loss. The fruit subjected to SNP (2.0 mM) treatment retained more total anthocyanins and total phenolic content with reduced peroxidase and polyphenol oxidase enzyme activity. Other quality attributes, such as total soluble solids (TSS), titratable acidity and ascorbic acid, were also recorded to be greater in the SNP (2.0 mM)-treated fruits. These results were consistent with the expression profiles of LcPPO, LcPOD and Laccase genes. The expression levels of these genes were highly suppressed in the nitric oxide-treated fruits compared to those in the control fruits. Therefore, SNP (2.0 mM) treatment could reduce litchi pericarp browning and prolong the post-harvest life of fruit for up to eighteen days during cold storage.

{"title":"Mitigating Oxidative Browning in Litchi by Regulating Biochemical Markers and Targeted Gene expression via Exogenous Nitric Oxide.","authors":"Khushboo Azam, Hidayatullah Mir, Mohammed Wasim Siddiqui, Tushar Ranjan, Fozia Homa, Nusrat Perveen, Duniya Ram Singh, Manzer H Siddiqui","doi":"10.1111/ppl.70107","DOIUrl":"https://doi.org/10.1111/ppl.70107","url":null,"abstract":"<p><p>Nitric oxide has been shown to influence oxidative metabolism in plants, enhancing their resilience to various biotic and abiotic stresses. Post-harvest oxidative stress is a key factor leading to quality deterioration in litchi (Litchi chinensis Sonn.) fruit, with visible symptoms that significantly reduce shelf life and consumer acceptability. Therefore, the effect of exogenous sodium nitroprusside (SNP; 1.0 mM and 2.0 mM) on litchi (cv. Purbi) fruit was examined during storage at 7 ± 1°C. Different biochemical changes related to post-harvest quality and pericarp browning of litchi were evaluated. The results suggested that SNP (2.0 mM) was significantly effective in reducing weight loss, the pericarp browning index and decay loss. The fruit subjected to SNP (2.0 mM) treatment retained more total anthocyanins and total phenolic content with reduced peroxidase and polyphenol oxidase enzyme activity. Other quality attributes, such as total soluble solids (TSS), titratable acidity and ascorbic acid, were also recorded to be greater in the SNP (2.0 mM)-treated fruits. These results were consistent with the expression profiles of LcPPO, LcPOD and Laccase genes. The expression levels of these genes were highly suppressed in the nitric oxide-treated fruits compared to those in the control fruits. Therefore, SNP (2.0 mM) treatment could reduce litchi pericarp browning and prolong the post-harvest life of fruit for up to eighteen days during cold storage.</p>","PeriodicalId":20164,"journal":{"name":"Physiologia plantarum","volume":"177 1","pages":"e70107"},"PeriodicalIF":5.4,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143426056","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Physiologia plantarum
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