The significant variability in agricultural ecosystems leads to considerable differences in soil microbial community responses to nitrogen, attributed to the diverse combinations of agronomic practices, such as planting patterns and fertilization strategies.
Results
There is no doubt that reducing nitrogen fertilizer inputs is a crucial step in minimizing greenhouse gas emissions; however, determining the optimal nitrogen fertilizer inputs for different ecosystems, while maintaining crop yields, remains a significant challenge. The observed differences in microbial community responses to nitrogen appear to provide targeted insights in this regard. We systematically review and discuss the variances in soil microbial responses to nitrogen across different agricultural systems, aiming to assist researchers and farm managers in providing focused references for scaling up agricultural systems.
Conclusion
From a practical standpoint, targeted support for nitrogen management in various agricultural ecosystems is essential to reduce nitrogen waste, maintain soil health, and curb global warming trends. These factors are closely linked to crop types, management practices, and the local environmental conditions of the agricultural systems. Furthermore, the rational utilization of M genes to assist in regulating the assembly of soil nitrogen, cycling-related microbial communities may serve as an effective approach to achieving precision agriculture and promoting ecosystem sustainability.
{"title":"Agronomic practices-driven response of nitrogen-related microorganisms","authors":"Yifeng Han, Minghao Lv, Jirui Liu, Shidong He, Wenchong Shi, Mingcong Li, Zheng Gao","doi":"10.1007/s11104-025-07214-y","DOIUrl":"https://doi.org/10.1007/s11104-025-07214-y","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Background</h3><p>The significant variability in agricultural ecosystems leads to considerable differences in soil microbial community responses to nitrogen, attributed to the diverse combinations of agronomic practices, such as planting patterns and fertilization strategies.</p><h3 data-test=\"abstract-sub-heading\">Results</h3><p>There is no doubt that reducing nitrogen fertilizer inputs is a crucial step in minimizing greenhouse gas emissions; however, determining the optimal nitrogen fertilizer inputs for different ecosystems, while maintaining crop yields, remains a significant challenge. The observed differences in microbial community responses to nitrogen appear to provide targeted insights in this regard. We systematically review and discuss the variances in soil microbial responses to nitrogen across different agricultural systems, aiming to assist researchers and farm managers in providing focused references for scaling up agricultural systems.</p><h3 data-test=\"abstract-sub-heading\">Conclusion</h3><p>From a practical standpoint, targeted support for nitrogen management in various agricultural ecosystems is essential to reduce nitrogen waste, maintain soil health, and curb global warming trends. These factors are closely linked to crop types, management practices, and the local environmental conditions of the agricultural systems. Furthermore, the rational utilization of M genes to assist in regulating the assembly of soil nitrogen, cycling-related microbial communities may serve as an effective approach to achieving precision agriculture and promoting ecosystem sustainability.</p>","PeriodicalId":20223,"journal":{"name":"Plant and Soil","volume":"25 1","pages":""},"PeriodicalIF":4.9,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142992767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-22DOI: 10.1007/s11104-025-07207-x
Yuye Shen, Yunying Fang, Tony Vancov, Xin Sun, Huaqiang Du, Yongfu Li, Bing Yu, Scott X. Chang, Yanjiang Cai
Background and aims
Greenspace soils are a critical component of urban ecosystems, playing an essential role in delivering ecosystem services. Soil organic carbon (SOC) in these areas show considerable variability and uncertainty due to urbanization. However, it remains poorly understood how urbanization intensity and vegetation type affect greenspace SOC concentration.
Methods
This study examines how urbanization intensity (low, medium and high) and vegetation type (trees, shrubs and grasses) influence SOC concentration in urban parks in Hangzhou city, China. Urbanization intensity is measured by population, economy and urban built-up area. In addition, the response of particulate organic carbon (POC) and mineral-associated organic carbon (MAOC) in greenspace soil to urbanization intensity was also assessed in the study to further understand the stability of SOC in urban parks.
Results
Total SOC and its fractions (POC and MAOC) increased significantly in urban parks with the increase of urbanization intensity. Despite this increase, SOC did not reach saturation levels, even under high urbanization intensity. Urbanization affected SOC concentration indirectly by modifying soil total nitrogen (+ 17.1%), total phosphorus (+ 7.1%), microbial biomass carbon (+ 10.9%), microbial biomass nitrogen (+ 0.7%), clay and fine silt contents (+ 1.9%), calcium ion (+ 1.1%), and P-acquiring enzyme activity (+ 1.0%). Among SOC fractions, MAOC, rather than POC, was the dominant form along the suburb-urban gradient, with the greater increase in MAOC driving the increase in overall SOC concentration. No significant difference in total SOC was found among vegetation types, but SOC accumulation in grasses was more responsive to urbanization than in trees and shrubs.
Conclusions
Intensified urbanization leads to higher SOC concentration, particularly MAOC. These findings are crucial for quantifying the impact of urbanization on SOC in urban parks and achieving better carbon management.
{"title":"Surface soil organic carbon accumulation in urban parks increases with urbanization intensity: a case study for Hangzhou, China","authors":"Yuye Shen, Yunying Fang, Tony Vancov, Xin Sun, Huaqiang Du, Yongfu Li, Bing Yu, Scott X. Chang, Yanjiang Cai","doi":"10.1007/s11104-025-07207-x","DOIUrl":"https://doi.org/10.1007/s11104-025-07207-x","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Background and aims</h3><p>Greenspace soils are a critical component of urban ecosystems, playing an essential role in delivering ecosystem services. Soil organic carbon (SOC) in these areas show considerable variability and uncertainty due to urbanization. However, it remains poorly understood how urbanization intensity and vegetation type affect greenspace SOC concentration.</p><h3 data-test=\"abstract-sub-heading\">Methods</h3><p>This study examines how urbanization intensity (low, medium and high) and vegetation type (trees, shrubs and grasses) influence SOC concentration in urban parks in Hangzhou city, China. Urbanization intensity is measured by population, economy and urban built-up area. In addition, the response of particulate organic carbon (POC) and mineral-associated organic carbon (MAOC) in greenspace soil to urbanization intensity was also assessed in the study to further understand the stability of SOC in urban parks.</p><h3 data-test=\"abstract-sub-heading\">Results</h3><p>Total SOC and its fractions (POC and MAOC) increased significantly in urban parks with the increase of urbanization intensity. Despite this increase, SOC did not reach saturation levels, even under high urbanization intensity. Urbanization affected SOC concentration indirectly by modifying soil total nitrogen (+ 17.1%), total phosphorus (+ 7.1%), microbial biomass carbon (+ 10.9%), microbial biomass nitrogen (+ 0.7%), clay and fine silt contents (+ 1.9%), calcium ion (+ 1.1%), and P-acquiring enzyme activity (+ 1.0%). Among SOC fractions, MAOC, rather than POC, was the dominant form along the suburb-urban gradient, with the greater increase in MAOC driving the increase in overall SOC concentration. No significant difference in total SOC was found among vegetation types, but SOC accumulation in grasses was more responsive to urbanization than in trees and shrubs.</p><h3 data-test=\"abstract-sub-heading\">Conclusions</h3><p>Intensified urbanization leads to higher SOC concentration, particularly MAOC. These findings are crucial for quantifying the impact of urbanization on SOC in urban parks and achieving better carbon management.\u0000</p>","PeriodicalId":20223,"journal":{"name":"Plant and Soil","volume":"57 1","pages":""},"PeriodicalIF":4.9,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142992768","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-21DOI: 10.1007/s11104-024-07177-6
Randa M. Abdel-Fatah, Nada A. Moner, Eman H. Nour, Tarek R. Elsayed, Mohamed T. Abbas, Mahmoud S. Abdelwahab, Mervat A. Hamza, Hanan H. Youssef, Ahmed S. Shehata, Omar M. Shahat, Mohamed Fayez, Silke Ruppel, Nabil A. Hegazi
Background and aim
Realizing that in vitro cultivation of plant microbiota is crucial to access core resources of the microbial members of the holobiont; culturing strategies are currently advanced based on plant-based culture media. Followed was the introduction of “in situ similis” cultivation strategy depending on the use of plant intact organs, e.g. leaves/ roots that finger print plant nutritional composition and expose compartment-affiliated microbiota.
Methods
Here, we advance a practical strategy to in vitro cultivation of tomato microbiota, making use of veggie-discs of homologous tomato and heterologous vegetables (potato and taro), as well as plant broth-based culture medium. Colony forming units (CFUs) are well-developed on water agar plates with veggie-discs as such or immersed with over-lay agar technique and/or membrane filters. The culturable bacteria community (CFUs) was analyzed by DGGE, and representative pure isolates were subjected to morpho-physiological studies and 16S rRNA gene sequencing.
Results
Veggie-discs acted as compatible natural/nutritional mat developing copious/fully-grown CFUs of bacteria, including actinomycetes, and fungi. The strategy uncovered the highly divergent composition of tomato culturable community, being extended to representatives of Actinomycetota, Bacillota, Bacteroidota and Pseudomonadota. Genuinely, the strategy expanded the diversity of tomato microbiota: brought into cultivation additional 18 genera not previously reported; novel cultivation of unique isolates that showed higher similarity to previously-uncultured clones representing Pseudomonadaceae, Oxalobacteraceae and Sphingomonadaceae.
Conclusion
The presented veggie-discs cultivation offers additional tools to in vitro render the hidden compartment-affiliated microbiota (bacteria/actinomycetes/fungi) accessible for future application of synthetic community approach (SynCom) and microbiota-target interventions, towards improved vegetables nutrition, health and quality, especially under soilless cultivation.
Graphical abstract
The graphical abstract that illustrates the idea of in situ-similis cultivation, where tomato microbiota are transferred to friendly and compatible veggie-discs compared to exotic and incompatible chemically-synthetic culture media.