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Rhodopseudomonas palustris Atp2 Protein Exerts Antifungal Effects by Targeting the Ribosomal Protein MoRpl12 in Magnaporthe oryzae. 黄绿假单胞菌 Atp2 蛋白通过靶向 Magnaporthe oryzae 的核糖体蛋白 MoRpl12 发挥抗真菌作用
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-10-01 DOI: 10.1094/PHYTO-05-24-0169-R
Chunyan Chen, Xiyang Wu, Qiang Huang, Yingfei Qin, Chenggang Li, Xin Zhang, Pei Wang, Xinqiu Tan, Yong Liu, Yue Chen, Deyong Zhang

Rice blast is one of the most hazardous diseases affecting rice production. Previously, we discovered that the Atp2 protein of Rhodopseudomonas palustris could significantly inhibit the appressorium formation and pathogenicity of Magnaporthe oryzae. However, the molecular mechanism of this fungus has remained unknown. This study revealed that Atp2 can enter the cell and interact with the ribosomal protein MoRpl12 of M. oryzae, directly affecting the expression of the MoRpl12 protein. Silencing the MoRPL12 gene can affect cell wall integrity, growth, conidiogenesis, and fungal pathogenicity. The quantitative reverse transcription PCR results showed significant changes in the expression of conidiation-related genes in the MoRPL12 gene-silenced mutants or in the Atp2 protein-treated plants. We further found that Atp2 treatment can influence the expression of ribosomal-related genes, such as RPL, in M. oryzae. Our study revealed a novel antifungal mechanism by which the Atp2 protein binds to the ribosomal protein MoRpl12 and inhibits the pathogenicity of rice blast fungus, providing a new potential target for rice blast prevention and control.

稻瘟病是影响水稻生产最严重的病害之一。此前,我们发现淡水红假单胞菌(Rhodopseudomonas palustris)的 Atp2 蛋白能显著抑制稻瘟病菌(Magnaporthe oryzae)的附着体形成和致病性。然而,这种真菌的分子机制一直不为人知。本研究发现,Atp2能进入细胞并与M. oryzae的核糖体蛋白MoRpl12相互作用,直接影响MoRpl12蛋白的表达。沉默 MoRPL12 基因可影响细胞壁的完整性、生长、分生孢子的发生和真菌的致病性。反转录定量 PCR 结果显示,MoRPL12 基因沉默突变体或经 Atp2 蛋白处理的植株中,分生相关基因的表达发生了显著变化。我们进一步发现,Atp2 处理可影响 M. oryzae 中核糖体相关基因(如 RPL)的表达。我们的研究揭示了 Atp2 蛋白与核糖体蛋白 MoRpl12 结合并抑制稻瘟病菌致病性的新型抗真菌机制,为稻瘟病防控提供了一个新的潜在靶标。
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引用次数: 0
Validation of Fungicide Spray Strategies and Selection for Fenhexamid Resistance in Botrytis cinerea on Greenhouse-Grown Grapevines. 在温室栽培的葡萄藤上验证喷洒杀真菌剂的策略,并筛选出对芬克菌胺具有抗性的葡萄灰霉病菌。
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-10-01 Epub Date: 2024-09-13 DOI: 10.1094/PHYTO-11-23-0443-R
Stephen C Boushell, Mengjun Hu

In this study, in planta assays were conducted to assess the effects of fungicide spray tactics, such as the reduction of the labeled fungicide dose and mixture with a multisite fungicide, on fungicide resistance selection and disease control using Vitis vinifera 'Cabernet Sauvignon' grown in a greenhouse for 2 years. The entire clusters were inoculated with Botrytis cinerea isolates at varying frequencies of fenhexamid resistance, followed by fungicide sprays and disease and fenhexamid resistance investigations at critical phenological stages. Our findings indicate that the lower dose of the at-risk fungicide, fenhexamid, effectively managed fenhexamid resistance and disease as well as the higher, labeled dose. In addition, a mixture with the multisite fungicide captan generally resulted a net-positive effect on both resistance management and disease control.

本研究利用在温室中种植了两年的葡萄(Vitis vinifera)"赤霞珠(Cabernet Sauvignon)"进行了植物试验,以评估杀菌剂喷洒策略(如减少标注的杀菌剂剂量和与多点杀菌剂混合)对杀菌剂抗性选择和病害控制的影响。在整个葡萄簇中接种不同抗虫频率的葡萄孢分离株,然后在关键物候期进行杀菌剂喷洒、病害和抗虫性调查。我们的研究结果表明,低剂量的高风险杀菌剂 fenhexamid 能有效控制 fenhexamid 抗性和病害,其效果不亚于标注的高剂量杀菌剂。此外,与多点杀菌剂克菌丹混合使用,通常会对抗性管理和病害控制产生积极的效果。
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引用次数: 0
Effects of Different Light Conditions on Anatomical and Histological Features of Galls in Bacterial Gall Disease of Cerasus × yedoensis. 不同光照条件对 Cerasus × yedoensis 细菌性瘿病虫瘿解剖学和组织学特征的影响。
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-10-01 Epub Date: 2024-10-14 DOI: 10.1094/PHYTO-06-22-0221-R
Takefumi Ikeda, Misaki Okuda, Makoto Ishihara, Yasuo Kon-No

Cerasus × yedoensis (cherry 'Somei-yoshino' Fujino) is affected by bacterial gall disease caused by Pseudomonas syringae pv. cerasicola (PSC). C. × yedoensis is often infected with PSC under weak light intensity, which indicates that susceptibility of C. × yedoensis to PSC is affected by light. To evaluate the effects of white light intensity and different light qualities, white or blue, on bacterial gall disease development, we quantitatively assessed the anatomical and histological features of bacterial-inoculated sites on branches of 2-year-old potted C. × yedoensis seedlings grown under different light intensities and qualities. The stronger the white light intensity, the less severe the gall symptoms. Gall formation was suppressed more by blue than white light of the same intensity. The validity of a simple gall index for assessing gall development with the naked eye, via quantitative evaluation of gall shape by measuring gall height, width, and volume, showed that the gall index could be used as a practical method for on-site assessments of gall development. The ratio of degeneration area in the gall remained constant, suggesting the presence of some regulatory mechanism preventing PSC from affecting the entire gall within the plant. Microscopy showed that the gall tissue is composed primarily of callus cells and has voids containing gummy material that is exuded from cracks in the gall, and the periderm develops at the gall foot but not at the gall apex, so the cells at the gall apex were necrotic or collapsed.

Cerasus × yedoensis('Shomei-yoshino' Fujino 樱桃)受到由 Pseudomonas syringae pv. cerasicola(PSC)引起的细菌性瘿病的影响。在弱光条件下,C. × yedoensis 经常感染 PSC,这表明 C. × yedoensis 对 PSC 的敏感性受光照影响。为了评估白光强度和不同光质(白光或蓝光)对细菌性瘿病发生的影响,我们定量评估了在不同光强和光质下生长的两年生盆栽 C. × yedoensis幼苗枝条上细菌接种部位的解剖学和组织学特征。白光强度越强,虫瘿症状越轻。相同强度的蓝光比白光更能抑制虫瘿的形成。通过测量瘿的高度、宽度和体积,对瘿的形状进行定量评估,用肉眼评估瘿发育情况的简单瘿指数的有效性表明,瘿指数可用作现场评估瘿发育情况的实用方法。虫瘿中退化面积的比例保持不变,这表明植物体内存在某种调节机制,防止 PSC 影响整个虫瘿。显微镜检查显示,虫瘿组织主要由胼胝体细胞组成,空隙中含有从虫瘿裂缝中渗出的胶状物质,外皮在虫瘿底部发育,但在虫瘿顶端没有发育,因此虫瘿顶端的细胞已经坏死或塌陷。
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引用次数: 0
Host-Driven Selection, Revealed by Comparative Analysis of Xanthomonas Type III Secretion Effectoromes, Unveils Novel Recognized Effectors. 通过比较分析黄单胞菌 III 型分泌效应器基因组发现的宿主驱动选择揭示了新型识别效应器。
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-10-01 Epub Date: 2024-10-16 DOI: 10.1094/PHYTO-04-24-0147-R
Yao Xiao, Shatrupa Ray, Saul Burdman, Doron Teper

Xanthomonas species are specialized plant pathogens, often exhibiting a narrow host range. They rely on the translocation of effector proteins through the type III secretion system to colonize their respective hosts. The effector arsenal varies among Xanthomonas spp., typically displaying species-specific compositions. This species-specific effector composition, collectively termed the effectorome, is thought to influence host specialization. We determined the plant host-derived effectoromes of more than 300 deposited genomes of Xanthomonas species associated with either Solanaceae or Brassicaceae hosts. Comparative analyses revealed clear species-specific effectorome signatures. However, Solanaceae or Brassicaceae host-associated effectorome signatures were not detected. Nevertheless, host biases in the presence or absence of specific effector classes were observed. To assess whether host-associated effector absence results from selective pressures, we introduced effectors unique to Solanaceae pathogens to X. campestris pv. campestris and effectors unique to Brassicaceae pathogens to X. euvesicatoria pv. euvesicatoria (Xeue) and evaluated if these introductions hindered virulence on their respective hosts. Introducing the effector XopI into X. campestris pv. campestris reduced virulence on white cabbage leaves without affecting localized or systemic colonization. Introducing the XopAC or XopJ5 effectors into Xeue reduced virulence and colonization on tomato but not on pepper. Additionally, XopAC and XopJ5 induced a hypersensitive response on tomato leaves when delivered by Xeue or through Agrobacterium-mediated transient expression, confirming recognition in tomato. This study demonstrates the role of host-derived selection in establishing species-specific effectoromes, identifying XopAC and XopJ5 as recognized effectors in tomato.

黄单胞菌是专门的植物病原体,通常寄主范围很窄。它们依靠通过 III 型分泌系统转运效应蛋白来定植于各自的寄主。黄单胞菌属的效应蛋白库各不相同,通常具有物种特异性。这种物种特异性效应物组成统称为效应物组,被认为会影响宿主的特化。我们测定了 300 多个与茄科或十字花科寄主相关的黄单胞菌物种基因组的植物寄主衍生效应器组。比较分析发现了明显的物种特异性效应基因组特征。但是,没有发现茄科或十字花科寄主相关的效应基因组特征。不过,在存在或不存在特定效应物类别的情况下,也观察到了宿主的偏差。为了评估宿主相关效应物的缺失是否源于选择压力,我们向野油菜黄单胞菌(Xcc)引入了茄科病原体特有的效应物,向黄单胞菌(Xeue)引入了十字花科病原体特有的效应物,并评估了这些引入是否阻碍了它们在各自宿主上的毒力。在 Xcc 中引入效应子 XopI 会降低其在白甘蓝叶片上的毒力,但不会影响局部或系统定殖。将 XopAC 或 XopJ5 效应体引入 Xeue 会降低对番茄的毒力和定殖,但不会影响对辣椒的毒力和定殖。此外,XopAC 和 XopJ5 通过 Xeue 或农杆菌介导的瞬时表达在番茄叶片上诱导超敏反应,证实了在番茄上的识别能力。这项研究证明了宿主衍生选择在建立物种特异性效应子群中的作用,确定了 XopAC 和 XopJ5 是番茄中的识别效应子。
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引用次数: 0
Functional Characterization of the Histone Acetyltransferase FcElp3 in Lotus Rhizome Rot-Causing Fungus Fusarium commune. 荷花根茎腐烂病致病真菌 Fusarium commune 中组蛋白乙酰转移酶 FcElp3 的功能特征。
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-10-01 Epub Date: 2024-10-04 DOI: 10.1094/PHYTO-01-24-0017-R
Lifang Ye, Weigang Kuang, Lianhu Zhang, Yachun Lin, Yifan Zhang, Xiaotang Sun, Ruqiang Cui

Fusarium commune is the main pathogen of lotus rhizome rot, which causes the wilt of many plants. Histone acetyltransferase plays a critical part in the growth and virulence of fungi. In the present study, we identified an FcElp3 in F. commune homologous to histone acetyltransferase Elp3. We further constructed a mutant strain of F. commune to determine the function of FcElp3 in fungal growth and pathogenicity. The results showed that the deletion of FcElp3 resulted in reduced mycelial growth and sporulation. Compared with the wild type, the ΔFcElp3 strain showed more tolerance to osmotic stress and cell wall stress responses but was highly sensitive to oxidative stress. The subcellular localization results indicated that FcElp3 was distributed in both the cytoplasm and nucleus. Western blotting showed that FcElp3 was important for acetylation of H3K14 and H4K8. RNA sequencing analysis showed significant transcriptional changes in the ΔFcElp3 mutant, with 3,098 genes upregulated and 5,770 genes downregulated. Peroxisome was the most significantly enriched metabolic pathway for downregulated genes. This led to a significant decrease in the expression of the core transcription factor Fcap1 involved in the oxidative stress response. Pathogenicity tests revealed that the ΔFcElp3 mutant's pathogenicity on lotus was significantly decreased. Together, these findings clearly demonstrated that FcElp3 was involved in fungal growth, development, stress response, and pathogenicity via the direct regulation of multiple target genes.

镰刀菌是荷花根茎腐烂病的主要病原体,会导致许多植物枯萎。组蛋白乙酰转移酶对真菌的生长和毒力起着至关重要的作用。在本研究中,我们在镰刀菌中发现了一种 FcElp3,它与组蛋白乙酰转移酶 Elp3 同源。我们进一步构建了一株镰刀菌突变株,以确定 FcElp3 在真菌生长和致病性中的功能。结果表明,缺失FcElp3会导致菌丝生长和孢子产生减少。与WT相比,ΔFcElp3菌株对渗透胁迫和细胞壁胁迫反应表现出更强的耐受性,但对氧化胁迫高度敏感。亚细胞定位结果表明,FcElp3分布于细胞质和细胞核中。Western 印迹显示,FcElp3 对 H3K14 和 H4K8 的乙酰化很重要。RNA-seq分析显示,ΔFcElp3突变体的转录发生了显著变化,3098个基因上调,5770个基因下调。过氧化物酶体是基因下调最明显的代谢途径。它还导致参与氧化应激反应的核心转录因子 Fcap1 的表达明显下降。致病性测试表明,ΔFcElp3突变体对荷花的致病性显著降低。这些发现清楚地表明,FcElp3通过直接调控多个靶基因参与真菌的生长、发育、应激反应和致病性。
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引用次数: 0
New Approaches to Plant Pathogen Detection and Disease Diagnosis. 植物病原体检测和病害诊断的新方法。
IF 3.2 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-09-12 DOI: 10.1094/phyto-10-23-0366-ia
Jaime Cubero,Pablo J Zarco-Tejada,Sara Cuesta-Morrondo,Ana Palacio-Bielsa,Juan A Navas-Cortés,Pilar Sabuquillo,Tomás Poblete,Blanca B Landa,Jerson Garita-Cambronero
Detecting plant pathogens and diagnosing diseases are critical components of successful pest management. These key areas have undergone significant advancements driven by breakthroughs in molecular biology and remote sensing technologies within the realm of precision agriculture. Notably, nucleic acid amplification techniques, with recent emphasis on sequencing procedures, particularly next-generation sequencing, have enabled improved DNA or RNA amplification detection protocols that now enable previously unthinkable strategies aimed at dissecting plant microbiota, including the disease-causing components. Simultaneously, the domain of remote sensing has seen the emergence of cutting-edge imaging sensor technologies and the integration of powerful computational tools, such as machine learning. These innovations enable spectral analysis of foliar symptoms and specific pathogen-induced alterations, making imaging spectroscopy and thermal imaging fundamental tools for large-scale disease surveillance and monitoring. These technologies contribute significantly to understanding the temporal and spatial dynamics of plant diseases.
检测植物病原体和诊断病害是成功病虫害管理的关键组成部分。在精准农业领域,分子生物学和遥感技术的突破推动了这些关键领域的重大进展。值得注意的是,核酸扩增技术以及最近强调的测序程序,特别是下一代测序,改进了 DNA 或 RNA 扩增检测规程,现在可以采用以前无法想象的策略来剖析植物微生物群,包括致病成分。与此同时,遥感领域也出现了尖端的成像传感器技术,并集成了强大的计算工具,如机器学习。这些创新技术能够对叶面症状和特定病原体引起的变化进行光谱分析,使成像光谱学和热成像成为大规模病害监测和监控的基本工具。这些技术大大有助于了解植物病害的时空动态。
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引用次数: 0
Analysis of Plant and Fungal Transcripts from Resistant and Susceptible Phenotypes of Leptospermum scoparium Challenged by Austropuccinia psidii. 分析受到 Austropuccinia psidii 挑战的 Leptospermum scoparium 的抗性和易感表型的植物和真菌转录本。
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-09-01 Epub Date: 2024-09-12 DOI: 10.1094/PHYTO-04-24-0138-R
Rebekah A Frampton, Louise S Shuey, Charles C David, Georgia M Pringle, Falk Kalamorz, Geoff S Pegg, David Chagné, Grant R Smith

Austropuccinia psidii is the causal pathogen of myrtle rust disease of Myrtaceae. To gain understanding of the initial infection process, gene expression in germinating A. psidii urediniospores and in Leptospermum scoparium-inoculated leaves were investigated via analyses of RNA sequencing samples taken 24 and 48 h postinoculation (hpi). Principal component analyses of transformed transcript count data revealed differential gene expression between the uninoculated L. scoparium control plants that correlated with the three plant leaf resistance phenotypes (immunity, hypersensitive response, and susceptibility). Gene expression in the immune resistant plants did not significantly change in response to fungal inoculation, whereas susceptible plants showed differential expression of genes in response to fungal challenge. A putative disease resistance gene, jg24539.t1, was identified in the L. scoparium hypersensitive response phenotype family. Expression of this gene may be associated with the phenotype and could be important for further understanding the plant hypersensitive response to A. psidii challenge. Differential expression of pathogen genes was found between samples taken 24 and 48 hpi, but there were no significant differences in pathogen gene expression that were associated with the three different plant leaf resistance phenotypes. There was a significant decrease in the abundance of fungal transcripts encoding three putative effectors and a putative carbohydrate-active enzyme between 24 and 48 hpi, suggesting that the encoded proteins are important during the initial phase of infection. These transcripts, or their translated proteins, may be potential targets to impede the early phases of fungal infection by this wide-host-range obligate biotrophic basidiomycete.

桃金娘锈病(Austropuccinia psidii)是桃金娘科植物桃金娘锈病的病原菌。为了了解最初的感染过程,研究人员通过分析接种后 24 小时和 48 小时(hpi)的 RNAseq 样本,研究了萌发的 Austropuccinia psidii urediniospores 和接种的 Leptospermum scoparium 叶子中的基因表达情况。对转化的转录本计数数据进行主成分分析后发现,未接种的 L. scoparium 对照植株的基因表达存在差异,这与三种植物叶片抗性表型(免疫性、超敏反应和易感性)相关。免疫抗病植株的基因表达在真菌接种后没有明显变化,而易感植株的基因表达则在真菌挑战下出现差异。在 L. scoparium 超敏反应表型家族中发现了一个推测的抗病基因 jg24539.t1。该基因的表达可能与表型有关,对于进一步了解植物对 A. psidii 挑战的超敏反应可能很重要。在 24 小时和 48 小时前采集的样本中,病原体基因的表达存在差异,但病原体基因的表达与三种不同的植物叶片抗性表型没有显著差异。在 24 小时至 48 小时期间,编码三种假定效应物和一种假定碳水化合物活性酶的真菌转录本的丰度明显下降,这表明编码的蛋白质在感染初期非常重要。这些转录本或其翻译蛋白可能是阻碍这种广寄主范围强制性生物营养基枝真菌感染早期阶段的潜在目标。
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引用次数: 0
Two Polyketide Synthase Genes, VpPKS10 and VpPKS33, Regulated by VpLaeA Are Essential to the Virulence of Valsa pyri. 由 VpLaeA 调控的两个多酮合成酶基因 VpPKS10 和 VpPKS33 对于焦蝽的毒力至关重要。
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-09-01 Epub Date: 2024-09-09 DOI: 10.1094/PHYTO-12-23-0498-R
Liangliang Zhu, Lin Tang, Xiangrong Tian, Yayuan Bai, Lili Huang

Valsa pyri, the causal agent of pear canker disease, typically induces cankers on the bark of infected trees and even leads to tree mortality. Secondary metabolites produced by pathogenic fungi play a crucial role in the pathogenic process. In this study, secondary metabolic regulator VpLaeA was identified in V. pyri. VpLaeA was found to strongly affect the pathogenicity, fruiting body formation, and toxicity of secondary metabolites of V. pyri. Additionally, VpLaeA was found to be required for the response of V. pyri to some abiotic stresses. Transcriptome data analysis revealed that many of differentially expressed genes were involved in the secondary metabolite biosynthesis. Among them, about one third of secondary metabolite biosynthesis core genes were regulated by VpLaeA at different periods. Seven differentially expressed secondary metabolite biosynthesis core genes (VpPKS9, VpPKS10, VpPKS33, VpNRPS6, VpNRPS7, VpNRPS16, and VpNRPS17) were selected for knockout. Two modular polyketide synthase genes (VpPKS10 and VpPKS33) that were closely related to the virulence of V. pyri from the above seven genes were identified. Notably, VpPKS10 and VpPKS33 also affected the production of fruiting body of V. pyri but did not participate in the resistance of V. pyri to abiotic stresses. Overall, this study demonstrates the multifaceted biological functions of VpLaeA in V. pyri and identifies two toxicity-associated polyketide synthase genes in Valsa species fungi for the first time.

梨腐烂病的病原菌 Valsa pyri 通常会在受感染树木的树皮上诱发腐烂,甚至导致树木死亡。病原真菌产生的次级代谢产物(SMs)在致病过程中起着至关重要的作用。本研究发现了 V. pyri 的次生代谢调节因子 VpLaeA。研究发现,VpLaeA 能强烈影响焦蝽的致病性、子实体的形成和 SMs 的毒性。此外,还发现 VpLaeA 是 Pyri 对某些非生物胁迫做出反应所必需的。转录组数据分析显示,许多差异表达基因参与了次生代谢物的生物合成(SMB)。其中,约三分之一的 SMB 核心基因在不同时期受 VpLaeA 的调控。筛选出七个差异表达的 SMB 核心基因(VpPKS9、VpPKS10、VpPKS33、VpNRPS6、VpNRPS7、VpNRPS16 和 VpNRPS17)进行敲除。从上述 7 个基因中确定了两个模块化多酮合成酶(PKS)基因(VpPKS10 和 VpPKS33),它们与焦脓疱疮病毒的毒力密切相关。值得注意的是,VpPKS10 和 VpPKS33 也会影响脓葡萄孢子体的产生,但并不参与脓葡萄孢对非生物胁迫的抗性。总之,本研究证明了VpLaeA在V. pyri中的多方面生物学功能,并首次在Valsa种真菌中鉴定了两个与毒性相关的PKS基因。
{"title":"Two Polyketide Synthase Genes, <i>VpPKS10</i> and <i>VpPKS33</i>, Regulated by VpLaeA Are Essential to the Virulence of <i>Valsa pyri</i>.","authors":"Liangliang Zhu, Lin Tang, Xiangrong Tian, Yayuan Bai, Lili Huang","doi":"10.1094/PHYTO-12-23-0498-R","DOIUrl":"10.1094/PHYTO-12-23-0498-R","url":null,"abstract":"<p><p><i>Valsa pyri</i>, the causal agent of pear canker disease, typically induces cankers on the bark of infected trees and even leads to tree mortality. Secondary metabolites produced by pathogenic fungi play a crucial role in the pathogenic process. In this study, secondary metabolic regulator VpLaeA was identified in <i>V. pyri</i>. <i>VpLaeA</i> was found to strongly affect the pathogenicity, fruiting body formation, and toxicity of secondary metabolites of <i>V. pyri</i>. Additionally, <i>VpLaeA</i> was found to be required for the response of <i>V. pyri</i> to some abiotic stresses. Transcriptome data analysis revealed that many of differentially expressed genes were involved in the secondary metabolite biosynthesis. Among them, about one third of secondary metabolite biosynthesis core genes were regulated by <i>VpLaeA</i> at different periods. Seven differentially expressed secondary metabolite biosynthesis core genes (<i>VpPKS9</i>, <i>VpPKS10</i>, <i>VpPKS33</i>, <i>VpNRPS6</i>, <i>VpNRPS7</i>, <i>VpNRPS16</i>, and <i>VpNRPS17</i>) were selected for knockout. Two modular polyketide synthase genes (<i>VpPKS10</i> and <i>VpPKS33</i>) that were closely related to the virulence of <i>V. pyri</i> from the above seven genes were identified. Notably, <i>VpPKS10</i> and <i>VpPKS33</i> also affected the production of fruiting body of <i>V. pyri</i> but did not participate in the resistance of <i>V. pyri</i> to abiotic stresses. Overall, this study demonstrates the multifaceted biological functions of <i>VpLaeA</i> in <i>V. pyri</i> and identifies two toxicity-associated polyketide synthase genes in <i>Valsa</i> species fungi for the first time.</p>","PeriodicalId":20410,"journal":{"name":"Phytopathology","volume":" ","pages":"2071-2083"},"PeriodicalIF":2.6,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141446869","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep Learning-Based Barley Disease Quantification for Sustainable Crop Production. 基于深度学习的大麦病害定量分析促进可持续作物生产
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-09-01 Epub Date: 2024-09-13 DOI: 10.1094/PHYTO-02-24-0056-KC
Yassine Bouhouch, Qassim Esmaeel, Nicolas Richet, Essaïd Aït Barka, Aurélie Backes, Luiz Angelo Steffenel, Majida Hafidi, Cédric Jacquard, Lisa Sanchez

Net blotch disease caused by Drechslera teres is a major fungal disease that affects barley (Hordeum vulgare) plants and can result in significant crop losses. In this study, we developed a deep learning model to quantify net blotch disease symptoms on different days postinfection on seedling leaves using Cascade R-CNN (region-based convolutional neural network) and U-Net (a convolutional neural network) architectures. We used a dataset of barley leaf images with annotations of net blotch disease to train and evaluate the model. The model achieved an accuracy of 95% for Cascade R-CNN in net blotch disease detection and a Jaccard index score of 0.99, indicating high accuracy in disease quantification and location. The combination of Cascade R-CNN and U-Net architectures improved the detection of small and irregularly shaped lesions in the images at 4 days postinfection, leading to better disease quantification. To validate the model developed, we compared the results obtained by automated measurement with a classical method (necrosis diameter measurement) and a pathogen detection by real-time PCR. The proposed deep learning model could be used in automated systems for disease quantification and to screen the efficacy of potential biocontrol agents to protect against disease.

由 Drechslera teres 引起的网斑病是影响大麦(Hordeum vulgare)植株的一种主要真菌病害,可导致严重的作物损失。在这项研究中,我们开发了一种深度学习模型,利用级联 R-CNN(基于区域的卷积神经网络)和 U-Net(一种卷积神经网络)架构来量化幼苗叶片感染后不同天数的净斑病症状。我们使用带有网斑病注释的大麦叶片图像数据集来训练和评估该模型。该模型的级联 R-CNN 净斑病检测准确率达到 95%,Jaccard 指数为 0.99,表明疾病定量和定位的准确率很高。级联 R-CNN 和 U-Net 架构的结合提高了对感染后 4 天图像中形状不规则的小病灶的检测,从而更好地量化了疾病。为了验证所开发的模型,我们将自动测量的结果与经典方法(坏死直径测量)和实时 PCR 的病原体检测结果进行了比较。所提出的深度学习模型可用于病害定量的自动化系统,也可用于筛选潜在生物防治剂的防病效果。
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引用次数: 0
Reconsidering the Lessons Learned from the 1970 Southern Corn Leaf Blight Epidemic. 重新考虑从 1970 年南方玉米叶枯病疫情中吸取的教训。
IF 2.6 2区 农林科学 Q2 PLANT SCIENCES Pub Date : 2024-09-01 Epub Date: 2024-08-14 DOI: 10.1094/PHYTO-03-24-0105-PER
Peter Balint-Kurti, Jerald Pataky

The southern corn leaf blight epidemic of 1970 caused estimated losses of about 16% for the U.S. corn crop, equivalent to about $8 billion in current terms. The epidemic was caused by the prevalence of Texas male sterile cytoplasm (cms-T), used to produce most of the hybrid corn seed planted that year, combined with the emergence of a novel race of the fungus Cochliobolus heterostrophus that was exquisitely virulent on cms-T corn. Remarkably, the epidemic lasted just a single year. This episode has often been portrayed in the literature and textbooks over the last 50 years as a catastrophic mistake perpetrated by corn breeders and seed companies of the time who did not understand or account for the dangers of crop genetic uniformity. In this perspective article, we aim to present an alternative interpretation of these events. First, we contend that, rather than being caused by a grievous error on the part of the corn breeding and seed industry, this epidemic was a particularly unfortunate, unusual, and unlucky consequence of a technological advancement intended to improve the efficiency of corn seed production for America's farmers. Second, we tell the story of the resolution of the epidemic as an example of timely, meticulously applied research in the public sector for the public good.

据估计,1970 年南方玉米叶枯病疫情给美国玉米作物造成了约 16% 的损失,按当前价格计算相当于约 80 亿美元。造成这一流行病的原因是得克萨斯雄性不育细胞质(cms-T)的盛行,而该年种植的大部分杂交玉米种子都是用这种细胞质生产的,再加上出现了一种对 cms-T 玉米具有极强毒性的新型异养鞘氨醇真菌(Cochliobolus heterostrophus)。值得注意的是,疫情只持续了一年。在过去 50 年的文献和教科书中,这一事件经常被描述为当时的玉米育种者和种子公司犯下的灾难性错误,他们不了解或没有考虑到作物基因一致性的危险。在这篇透视文章中,我们旨在对这些事件提出另一种解释。首先,我们认为,这一流行病不是玉米育种和种子行业的严重错误造成的,而是旨在为美国农民提高玉米种子生产效率的技术进步带来的特别不幸、不寻常和不走运的后果。其次,我们把解决这一疫情的故事作为公共部门及时、细致地开展公益应用研究的一个范例。
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引用次数: 0
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Phytopathology
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