Pub Date : 2025-02-01DOI: 10.1016/j.prevetmed.2024.106399
Heather L. Walker , Ryan S. Miller , Laura W. Pomeroy , Andreia G. Arruda
In the United States (US), a national control program from bovine tuberculosis (bTB) has been successful at greatly reducing the incidence of Mycobacterium bovis infection in domestic cattle and mitigating exposure to humans. However, experience in many countries, including the US, has demonstrated that eradication of animal tuberculosis (TB) from wildlife can complicate disease control programs. Wild pigs may serve as an important maintenance species for TB, contributing to outbreaks in cattle and hampering disease control programs. In the US, on the Hawaiian island of Molokai, wild pigs facilitated TB transmission, but risk factors contributing to infection of TB were not characterized. To fill this gap, we retrospectively analyzed data from an outbreak of M. bovis in wild pigs and domestic cattle in California during 1961–1967. Using generalized linear models we investigated demographic risk factors (age and sex) for TB infection in wild pigs as well as the association among wild pig and domestic cattle prevalence. Our models demonstrated a predictive accuracy of 87.8 % and suggest adult female wild pigs have significantly lower odds of being TB positive (odds ratio (OR) = 0.41, p value = 0.022). Furthermore, our models identified a possible positive association between male wild pigs and TB status (OR = 2.37, p value = 0.055). We also found evidence of differences in geographic risks. Our findings contribute to the existing literature describing risk factors of M. bovis infection in wild pigs and can be used to support targeted surveillance activities in wild pigs.
{"title":"Characterizing risk factors for infection of Mycobacterium bovis between wild pigs and domestic cattle from an outbreak response — California, 1961–1967","authors":"Heather L. Walker , Ryan S. Miller , Laura W. Pomeroy , Andreia G. Arruda","doi":"10.1016/j.prevetmed.2024.106399","DOIUrl":"10.1016/j.prevetmed.2024.106399","url":null,"abstract":"<div><div>In the United States (US), a national control program from bovine tuberculosis (bTB) has been successful at greatly reducing the incidence of <em>Mycobacterium bovis</em> infection in domestic cattle and mitigating exposure to humans. However, experience in many countries, including the US, has demonstrated that eradication of animal tuberculosis (TB) from wildlife can complicate disease control programs. Wild pigs may serve as an important maintenance species for TB, contributing to outbreaks in cattle and hampering disease control programs. In the US, on the Hawaiian island of Molokai, wild pigs facilitated TB transmission, but risk factors contributing to infection of TB were not characterized. To fill this gap, we retrospectively analyzed data from an outbreak of <em>M. bovis</em> in wild pigs and domestic cattle in California during 1961–1967. Using generalized linear models we investigated demographic risk factors (age and sex) for TB infection in wild pigs as well as the association among wild pig and domestic cattle prevalence. Our models demonstrated a predictive accuracy of 87.8 % and suggest adult female wild pigs have significantly lower odds of being TB positive (odds ratio (OR) = 0.41, <em>p</em> value = 0.022). Furthermore, our models identified a possible positive association between male wild pigs and TB status (OR = 2.37, <em>p</em> value = 0.055). We also found evidence of differences in geographic risks. Our findings contribute to the existing literature describing risk factors of <em>M. bovis</em> infection in wild pigs and can be used to support targeted surveillance activities in wild pigs.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106399"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142813913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01DOI: 10.1016/j.prevetmed.2024.106409
H.L. Seger , M.W. Sanderson , B.J. White , C. Lanzas
Empirical data on livestock contact networks are scarce but digital technologies are increasingly used to characterize animal behavior and describe the dynamics of contact networks. The objective of this study was to use contact network analysis to quantify contacts within three pens of feedlot cattle across three consecutive years at varying temporal resolutions to better inform the construction of network-based disease transmission models for cattle within confined-housing systems. We also aimed to describe the influence of the variation in Real-Time Location System (RTLS) average tag read rates and the effect of increasing minimum contact duration (MCD) on the contact networks of feedlot cattle. Three pens of feedlot steers were tagged with RTLS, one pen in each of three consecutive summers from 2017 to 2019. Contacts were defined with a spatial threshold of 0.71 m and an MCD of either 10, 30, or 60 seconds. Static, undirected, weighted contact networks were created for the full study duration and then split into daily (24-h), 6-h period, and hourly networks to better assess network heterogeneity. For the full study duration time scale, all three networks were found to be densely connected. The networks showed more heterogeneity in network density and clustering coefficient when smaller time scales (6-h period and hourly) were applied. When contacts were defined with a MCD of 30 or 60 seconds, the total number of contacts seen in each network decreased, indicating that most of the contacts observed in our networks may have been transient passing contacts. For example, the total defined contacts for the 2017 native read rate network were 930,843 at 10 s MCD, 95,570 at 30 s MCD, and 19,135 at 60 s MCD. Though the same system was used for all three years, variation in average tag read rate was observed (range: 2.2 readings/min (2018) to 7.4 readings/min (2017)). When the networks were down-scaled from higher average tag read rates to match lower tag read rates, the full study networks maintained similar network density and clustering, though the average edge weight between pairs decreased. Overall, the networks created here from high-resolution spatial and temporal contact observation data provide estimates for a contact network within a commercial US feedlot pen.
牲畜接触网络的经验数据很少,但数字技术越来越多地用于表征动物行为和描述接触网络的动态。本研究的目的是使用接触网络分析来量化连续三年不同时间分辨率下饲养场牛的三个围栏内的接触情况,以便更好地为封闭住房系统中牛的基于网络的疾病传播模型的构建提供信息。本文还研究了实时定位系统(RTLS)平均标签读取率的变化以及增加最小接触持续时间(MCD)对饲养场牛接触网络的影响。在2017年至2019年连续三个夏季,三支饲养场阉牛的猪圈被贴上了RTLS标签。接触的空间阈值为0.71 m, MCD为10、30或60 秒。在整个研究期间创建静态、无向、加权接触网络,然后将其分为每日(24小时)、6小时和每小时网络,以更好地评估网络异质性。在整个研究持续时间尺度上,这三个网络被发现是紧密相连的。在较小的时间尺度(6 h周期和小时)下,网络密度和聚类系数的异质性更强。当将触点定义为MCD为30或60 秒时,在每个网络中看到的触点总数减少,这表明在我们的网络中观察到的大多数触点可能是短暂的通过触点。例如,2017年本地阅读速率网络的总定义联系人为930,843(10 s MCD), 95,570(30 s MCD)和19,135(60 s MCD)。虽然在所有三年中使用了相同的系统,但观察到平均标签读取率的变化(范围:2.2读数/分钟(2018年)至7.4读数/分钟(2017年))。当网络从较高的平均标签读取率缩小到匹配较低的标签读取率时,整个研究网络保持相似的网络密度和聚类,尽管对之间的平均边权减小。总的来说,通过高分辨率的空间和时间接触观测数据创建的网络为美国商业饲养场围栏内的接触网络提供了估计。
{"title":"The effect of temporal resolution and contact duration on Real-Time location system-based contact networks for confined feedlot cattle","authors":"H.L. Seger , M.W. Sanderson , B.J. White , C. Lanzas","doi":"10.1016/j.prevetmed.2024.106409","DOIUrl":"10.1016/j.prevetmed.2024.106409","url":null,"abstract":"<div><div>Empirical data on livestock contact networks are scarce but digital technologies are increasingly used to characterize animal behavior and describe the dynamics of contact networks. The objective of this study was to use contact network analysis to quantify contacts within three pens of feedlot cattle across three consecutive years at varying temporal resolutions to better inform the construction of network-based disease transmission models for cattle within confined-housing systems. We also aimed to describe the influence of the variation in Real-Time Location System (RTLS) average tag read rates and the effect of increasing minimum contact duration (MCD) on the contact networks of feedlot cattle. Three pens of feedlot steers were tagged with RTLS, one pen in each of three consecutive summers from 2017 to 2019. Contacts were defined with a spatial threshold of 0.71 m and an MCD of either 10, 30, or 60 seconds. Static, undirected, weighted contact networks were created for the full study duration and then split into daily (24-h), 6-h period, and hourly networks to better assess network heterogeneity. For the full study duration time scale, all three networks were found to be densely connected. The networks showed more heterogeneity in network density and clustering coefficient when smaller time scales (6-h period and hourly) were applied. When contacts were defined with a MCD of 30 or 60 seconds, the total number of contacts seen in each network decreased, indicating that most of the contacts observed in our networks may have been transient passing contacts. For example, the total defined contacts for the 2017 native read rate network were 930,843 at 10 s MCD, 95,570 at 30 s MCD, and 19,135 at 60 s MCD. Though the same system was used for all three years, variation in average tag read rate was observed (range: 2.2 readings/min (2018) to 7.4 readings/min (2017)). When the networks were down-scaled from higher average tag read rates to match lower tag read rates, the full study networks maintained similar network density and clustering, though the average edge weight between pairs decreased. Overall, the networks created here from high-resolution spatial and temporal contact observation data provide estimates for a contact network within a commercial US feedlot pen.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106409"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142872799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01DOI: 10.1016/j.prevetmed.2024.106397
Darren Michael Green
Veterinary surveillance frequently requires study design for freedom-from-disease testing, specifying a sample size to balance higher statistical power with larger sample sizes against increased research and ethics costs, with the recognition that tests can generate false positive and negative results: i.e., tests exhibit imperfect sensitivity and specificity. In this paper, we revisit the mathematics behind exact calculations of sample size in terms of the binomial and hypergeometric distributions, and present a new algorithm – implemented and available to use in R as a Shiny application with a graphical user interface – to determine sample size for practical situations. Often, sample size calculations are based upon simulations or approximations, but we show here that exact calculations are feasible. In addition, we relax the liberal assumption – which provides conservative sample-size estimates – that sensitivity and specificity are known exactly, and instead assume both are Beta distributed with known hyperparameters. The application presented here was originally designed as a learning tool for students and is now made available for wider use.
{"title":"A new web application for determining sample size in freedom-from-disease testing with imperfect tests","authors":"Darren Michael Green","doi":"10.1016/j.prevetmed.2024.106397","DOIUrl":"10.1016/j.prevetmed.2024.106397","url":null,"abstract":"<div><div>Veterinary surveillance frequently requires study design for freedom-from-disease testing, specifying a sample size to balance higher statistical power with larger sample sizes against increased research and ethics costs, with the recognition that tests can generate false positive and negative results: i.e., tests exhibit imperfect sensitivity and specificity. In this paper, we revisit the mathematics behind exact calculations of sample size in terms of the binomial and hypergeometric distributions, and present a new algorithm – implemented and available to use in <em>R</em> as a <em>Shiny</em> application with a graphical user interface – to determine sample size for practical situations. Often, sample size calculations are based upon simulations or approximations, but we show here that exact calculations are feasible. In addition, we relax the liberal assumption – which provides conservative sample-size estimates – that sensitivity and specificity are known exactly, and instead assume both are Beta distributed with known hyperparameters. The application presented here was originally designed as a learning tool for students and is now made available for wider use.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106397"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142795005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01DOI: 10.1016/j.prevetmed.2024.106414
Jie Pei , Yu Wang , Yanjun Zhou , Tao Huang , Jun Xie , Aizhen Guo , Yingyu Chen , Ian D. Robertson
Caprine brucellosis, mainly caused by Brucella melitensis, remains a significant zoonotic threat worldwide, affecting animal productivity, welfare, and public health. This study aimed to estimate the true prevalence (TP) and spatial distribution of antibodies to Brucella spp. among goat populations in Hubei Province, China. In 2021, approximately 1.4 million serum samples were collected from 23,126 goat flocks across 82 counties of 16 municipal regions of Hubei Province. A combination of the Rose Bengal Test and Serum Agglutination Test in series was used to detect antibodies against Brucella spp. A hierarchical Bayesian Latent Class Model was used to account for imperfect diagnostic sensitivity and specificity of the tests, conditional dependence between the two tests, and hierarchical data structure to estimate the TP and the probability of achieving a 95 % probability of having a TP below 0.1 % for each county and municipal region. Apparent prevalence was 0.051 % and 0.536 % at the animal and flock level, respectively. The median animal level TP in the 82 counties was 0.0088 % (Range: 0.0008 %, 9.3730 %), with 76.8 % of counties showing a median TP estimate below 0.1 %. Counties containing positive goats were mainly clustered in Huanggang and Huangshi, and counties bordering positive counties had a higher risk of seropositivity. Notably, 52.4 % of counties achieved a 95 % probability with a TP below 0.1 %. Sensitivity analyses confirmed the robustness of these findings across prior distributions. It was concluded that Hubei Province has achieved remarkable progress in caprine brucellosis elimination programs, and priority interventions should be given to positive counties and their bordering counties.
{"title":"True prevalence and spatial distribution of antibodies to Brucella spp. in goat populations in Hubei Province, People’s Republic of China: Progress toward disease elimination","authors":"Jie Pei , Yu Wang , Yanjun Zhou , Tao Huang , Jun Xie , Aizhen Guo , Yingyu Chen , Ian D. Robertson","doi":"10.1016/j.prevetmed.2024.106414","DOIUrl":"10.1016/j.prevetmed.2024.106414","url":null,"abstract":"<div><div>Caprine brucellosis, mainly caused by <em>Brucella melitensis</em>, remains a significant zoonotic threat worldwide, affecting animal productivity, welfare, and public health. This study aimed to estimate the true prevalence (TP) and spatial distribution of antibodies to <em>Brucella</em> spp. among goat populations in Hubei Province, China. In 2021, approximately 1.4 million serum samples were collected from 23,126 goat flocks across 82 counties of 16 municipal regions of Hubei Province. A combination of the Rose Bengal Test and Serum Agglutination Test in series was used to detect antibodies against <em>Brucella</em> spp. A hierarchical Bayesian Latent Class Model was used to account for imperfect diagnostic sensitivity and specificity of the tests, conditional dependence between the two tests, and hierarchical data structure to estimate the TP and the probability of achieving a 95 % probability of having a TP below 0.1 % for each county and municipal region. Apparent prevalence was 0.051 % and 0.536 % at the animal and flock level, respectively. The median animal level TP in the 82 counties was 0.0088 % (Range: 0.0008 %, 9.3730 %), with 76.8 % of counties showing a median TP estimate below 0.1 %. Counties containing positive goats were mainly clustered in Huanggang and Huangshi, and counties bordering positive counties had a higher risk of seropositivity. Notably, 52.4 % of counties achieved a 95 % probability with a TP below 0.1 %. Sensitivity analyses confirmed the robustness of these findings across prior distributions. It was concluded that Hubei Province has achieved remarkable progress in caprine brucellosis elimination programs, and priority interventions should be given to positive counties and their bordering counties.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106414"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142927954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01DOI: 10.1016/j.prevetmed.2024.106404
Allice Braga , Angélica Cavalheiro Bertagnolli , Vinícius da Rosa Fanfa , Rogério de Oliveira Rodrigues , Alice Faé , Gabriela Ramos , Rafaella Cristina Morais , Sidia Maria Callegari-Jacques , Cristine Cerva , Fabiana Quoos Mayer
Stringent sanitary standards are imperative for swine production, ensuring high biosecurity and safe meat. However, granulomatous lesions, often detected as “lymphadenitis” in slaughterhouses, lack routine laboratory examination, potentially overlooking tuberculosis among other etiologies. This study aimed to: (i) explore epidemiological variables linked to swine carcasses condemned due to “tuberculosis” or “lymphadenitis” in Rio Grande do Sul, southern Brazil in a retrospective survey; and (ii) evaluate the frequency of Mycobacterium tuberculosis in granulomatous lymphadenitis lesions. Epidemiological data from the public surveillance system including farm origin, slaughter location, season, producer type and the inspection scope, were evaluated by their association with the occurrence of animal transport guides (ATG) with at least one animal condemned due to lymphadenitis or tuberculosis. For the prospective study, tissue samples from 118 animals with granulomatous lymphadenitis lesions were examined through histopathology and bacterial isolation. The frequency of ATG with at least one carcass condemned due to lymphadenitis or tuberculosis was 2.27 % and 0.027 % respectively. The factors associated with lymphadenitis were slaughter location, origin, producer type, and inspection scope (state or municipal). However, no significant risk factors emerged for tuberculosis in multivariable analysis. Histopathology confirmed granulomatous lymphadenitis in 44.92 % of lymph nodes, and M. tuberculosis var. bovis was isolated in 2.54 % of cases. Although the tuberculosis frequency (0.002 %) was low, it surpassed federal inspection data (<0.001 %), evidencing that laboratory diagnosis should be considered in such lesions. This study underscores the need for improved diagnostic routine in slaughterhouses to enhance biosecurity and public health protection in the swine industry.
{"title":"Unveiling mycobacterial infections in Brazilian swine: Insights from epidemiological and diagnostic studies","authors":"Allice Braga , Angélica Cavalheiro Bertagnolli , Vinícius da Rosa Fanfa , Rogério de Oliveira Rodrigues , Alice Faé , Gabriela Ramos , Rafaella Cristina Morais , Sidia Maria Callegari-Jacques , Cristine Cerva , Fabiana Quoos Mayer","doi":"10.1016/j.prevetmed.2024.106404","DOIUrl":"10.1016/j.prevetmed.2024.106404","url":null,"abstract":"<div><div>Stringent sanitary standards are imperative for swine production, ensuring high biosecurity and safe meat. However, granulomatous lesions, often detected as “lymphadenitis” in slaughterhouses, lack routine laboratory examination, potentially overlooking tuberculosis among other etiologies. This study aimed to: (i) explore epidemiological variables linked to swine carcasses condemned due to “tuberculosis” or “lymphadenitis” in Rio Grande do Sul, southern Brazil in a retrospective survey; and (ii) evaluate the frequency of <em>Mycobacterium tuberculosis</em> in granulomatous lymphadenitis lesions. Epidemiological data from the public surveillance system including farm origin, slaughter location, season, producer type and the inspection scope, were evaluated by their association with the occurrence of animal transport guides (ATG) with at least one animal condemned due to lymphadenitis or tuberculosis. For the prospective study, tissue samples from 118 animals with granulomatous lymphadenitis lesions were examined through histopathology and bacterial isolation. The frequency of ATG with at least one carcass condemned due to lymphadenitis or tuberculosis was 2.27 % and 0.027 % respectively. The factors associated with lymphadenitis were slaughter location, origin, producer type, and inspection scope (state or municipal). However, no significant risk factors emerged for tuberculosis in multivariable analysis. Histopathology confirmed granulomatous lymphadenitis in 44.92 % of lymph nodes, and <em>M. tuberculosis</em> var. bovis was isolated in 2.54 % of cases. Although the tuberculosis frequency (0.002 %) was low, it surpassed federal inspection data (<0.001 %), evidencing that laboratory diagnosis should be considered in such lesions. This study underscores the need for improved diagnostic routine in slaughterhouses to enhance biosecurity and public health protection in the swine industry.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106404"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142813930","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Antimicrobial use (AMU) in veal production is high compared to other bovine production types and has been suggested as an area with potential for AMU reduction. High AMU is a public health concern due to its association with antimicrobial resistance (AMR). Identifying farm characteristics associated with AMU could provide valuable insights for stakeholders seeking to monitor and implement initiatives to reduce AMU. This study aimed at investigating farm characteristics associated with AMU in Danish rosé veal farms, which is the main veal production type in Denmark. The AMU and characteristics included were extracted from two Danish national databases; The Danish Central Husbandry Register (CHR) and the Danish Veterinary Medicines Statistics Program (VetStat). Characteristics included were farm size, mortality, number of suppliers, sites per farm, and farm-level composition of animals with regards to sex and breed. The 118 farms included in the study received 41 % of the total amount of antimicrobials prescribed for Danish calves and young stock in 2020 measured in Animal Daily Doses (ADD). A multivariable linear regression model with the annual average farm-level AMU as outcome was created. AMU was measured as ADD per 100 animals per day (ADD100) and square root-transformed in the model. Increasing farm size and number of suppliers and decreasing proportion of crossbred bulls were found to be significantly associated with higher AMU. However, proportion of crossbred bulls was correlated with proportion of females. Separating the effects of breed and sex was not possible, partly due to the highly summarised data structure. Mortality and number of sites were not significantly associated with AMU. Farms with the type “starter-farms” has previously been shown to have a higher AMU compared to other rosé veal farm types. An important finding in this study was that grouping multiple sites into farms by using ownership data made it possible to summarise AMU for the full line of production from arrival at the veal farm to exit for slaughter. The results and approaches from this paper present an opportunity for repeated evaluation of farm characteristics associated with AMU, which could be used to continuously adapt and target AMU monitoring and control. In addition, it is done on existing surveillance data which keeps the cost of the study low in terms of data collection and data management.
{"title":"Key farm characteristics associated with the level of antimicrobial use in rosé veal production – A Danish database study","authors":"Jeanette Kristensen , Amanda Brinch Kruse , Anne Mette Hostrup Kjeldsen , Liza Rosenbaum Nielsen","doi":"10.1016/j.prevetmed.2024.106406","DOIUrl":"10.1016/j.prevetmed.2024.106406","url":null,"abstract":"<div><div>Antimicrobial use (AMU) in veal production is high compared to other bovine production types and has been suggested as an area with potential for AMU reduction. High AMU is a public health concern due to its association with antimicrobial resistance (AMR). Identifying farm characteristics associated with AMU could provide valuable insights for stakeholders seeking to monitor and implement initiatives to reduce AMU. This study aimed at investigating farm characteristics associated with AMU in Danish rosé veal farms, which is the main veal production type in Denmark. The AMU and characteristics included were extracted from two Danish national databases; The Danish Central Husbandry Register (CHR) and the Danish Veterinary Medicines Statistics Program (VetStat). Characteristics included were farm size, mortality, number of suppliers, sites per farm, and farm-level composition of animals with regards to sex and breed. The 118 farms included in the study received 41 % of the total amount of antimicrobials prescribed for Danish calves and young stock in 2020 measured in Animal Daily Doses (ADD). A multivariable linear regression model with the annual average farm-level AMU as outcome was created. AMU was measured as ADD per 100 animals per day (ADD100) and square root-transformed in the model. Increasing farm size and number of suppliers and decreasing proportion of crossbred bulls were found to be significantly associated with higher AMU. However, proportion of crossbred bulls was correlated with proportion of females. Separating the effects of breed and sex was not possible, partly due to the highly summarised data structure. Mortality and number of sites were not significantly associated with AMU. Farms with the type “starter-farms” has previously been shown to have a higher AMU compared to other rosé veal farm types. An important finding in this study was that grouping multiple sites into farms by using ownership data made it possible to summarise AMU for the full line of production from arrival at the veal farm to exit for slaughter. The results and approaches from this paper present an opportunity for repeated evaluation of farm characteristics associated with AMU, which could be used to continuously adapt and target AMU monitoring and control. In addition, it is done on existing surveillance data which keeps the cost of the study low in terms of data collection and data management.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106406"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142823843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01DOI: 10.1016/j.prevetmed.2024.106410
Edyta A. Bauer , Wojciech Jagusiak
The purpose of the paper was to apply an Artificial Neural Networks with Radial Basis Function to develop an application model for diagnosing a subclinical ketosis type I and II in dairy cattle. While building the neural network model, applied methodology was compatible to the procedures used in Data Mining processes. The data set was created based on the composition of milk samples of 1520 Polish Holstein-Friesian cows. The milk samples were collected during test-day milkings and made available by Polish Federation of Cattle Breeders and Milk Producers. The milk composition parameters were used as the input variables for RBF network models. The value of the output variable was determined based on the content of β-hydroxybutyric acid in blood of cows. In the next stage of the work, the qualities of the pre-selected models were compared and the best ones were chosen. The sensitivity and specificity as well as the size of the AUC (Area Under the Curve) under the ROC (Receiver Operating Characteristic) were taken as the main criteria for network models evaluation. The model characterized by sensitivity of 0.86, specificity of 0.71 and AUC of 0.89 was selected for ketosis type I. The optimal for ketosis type II showed the sensitivity and specificity 0.81 and 0.75, respectively, and the size of AUC above 0.85. Chosen models were recorded using the predictive modelling markup language (PMML) for data mining models to be shared and used between the different applications.
{"title":"Prediction of ketosis using radial basis function neural network in dairy cattle farming","authors":"Edyta A. Bauer , Wojciech Jagusiak","doi":"10.1016/j.prevetmed.2024.106410","DOIUrl":"10.1016/j.prevetmed.2024.106410","url":null,"abstract":"<div><div>The purpose of the paper was to apply an Artificial Neural Networks with Radial Basis Function to develop an application model for diagnosing a subclinical ketosis type I and II in dairy cattle. While building the neural network model, applied methodology was compatible to the procedures used in Data Mining processes. The data set was created based on the composition of milk samples of 1520 Polish Holstein-Friesian cows. The milk samples were collected during test-day milkings and made available by Polish Federation of Cattle Breeders and Milk Producers. The milk composition parameters were used as the input variables for RBF network models. The value of the output variable was determined based on the content of β-hydroxybutyric acid in blood of cows. In the next stage of the work, the qualities of the pre-selected models were compared and the best ones were chosen. The sensitivity and specificity as well as the size of the AUC (Area Under the Curve) under the ROC (Receiver Operating Characteristic) were taken as the main criteria for network models evaluation. The model characterized by sensitivity of 0.86, specificity of 0.71 and AUC of 0.89 was selected for ketosis type I. The optimal for ketosis type II showed the sensitivity and specificity 0.81 and 0.75, respectively, and the size of AUC above 0.85. Chosen models were recorded using the predictive modelling markup language (PMML) for data mining models to be shared and used between the different applications.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106410"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142896963","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-01DOI: 10.1016/j.prevetmed.2025.106441
Abdelmonem Abdallah , David Francoz , Julie Berman , Simon Dufour , Sébastien Buczinski
The average daily gain (ADG) of veal calves is an important outcome to monitor for veal producers to maximize profitability. Transfer of passive immunity (TPI) is of paramount importance in dairy and beef calves. There is little information available that examine the relationship between TPI and ADG of veal calves in Québec. The objective of this study was to investigate the effect of arrival risk factors associated with lower ADG in milk and grain-fed veal calves in Québec. Between October 2017 and December 2018, a prospective cohort study was conducted on 59 batches of milk- and grain-fed veal calves in different geographic locations in Québec, Canada (n = 1729 calves). After arrival, thirty calves per batch were randomly sampled for estimating TPI using the Brix refractometer (serum threshold < 8.4 % for inadequate TPI). Throughout the production cycle, all health records of each batch of calves were extracted and used to quantify individual- and group-level risk factors. After the elaboration of a causal diagram using directed acyclic graphs, ADG was modelled through linear mixed models (LMMs) as function of categorical variables (individual inadequate TPI, arrival season, purchasing sites, and weights at purchase) and a continuous contextual variable (proportion of inadequate TPI in the batch). Also, the impact of morbidity (treated vs non treated) on ADG was investigated through linear regression model. Because performance and health data are typically underreported in commercial settings, data missingness was identified as a potential concern. Therefore, multiple imputation models were used. A total of 1084 calves had Brix % < 8.4 % giving a prevalence of 62.7 % of inadequate TPI. Individual calves with inadequate TPI gained 0.02 kg/d less than those with adequate TPI. Batch-level inadequate TPI prevalence was not associated with ADG difference in the sampled calves. Calves arriving to the facility during summer gained 80 g/d less than those arriving during fall. Calves treated at least once with antibiotic had lowered ADG by 7.2 kg throughout the production cycle compared to untreated calves. In conclusion, this study suggests that individual-level inadequate TPI assessed upon arrival in the facility, arrival season, and antibiotic treatments during the production cycle are associated with lowered ADG in veal calves.
{"title":"Veal calves management in Québec, Canada: Part II. Association between passive immunity transfer at arrival and average daily gain","authors":"Abdelmonem Abdallah , David Francoz , Julie Berman , Simon Dufour , Sébastien Buczinski","doi":"10.1016/j.prevetmed.2025.106441","DOIUrl":"10.1016/j.prevetmed.2025.106441","url":null,"abstract":"<div><div>The average daily gain (ADG) of veal calves is an important outcome to monitor for veal producers to maximize profitability. Transfer of passive immunity (TPI) is of paramount importance in dairy and beef calves. There is little information available that examine the relationship between TPI and ADG of veal calves in Québec. The objective of this study was to investigate the effect of arrival risk factors associated with lower ADG in milk and grain-fed veal calves in Québec. Between October 2017 and December 2018, a prospective cohort study was conducted on 59 batches of milk- and grain-fed veal calves in different geographic locations in Québec, Canada (n = 1729 calves). After arrival, thirty calves per batch were randomly sampled for estimating TPI using the Brix refractometer (serum threshold < 8.4 % for inadequate TPI). Throughout the production cycle, all health records of each batch of calves were extracted and used to quantify individual- and group-level risk factors. After the elaboration of a causal diagram using directed acyclic graphs, ADG was modelled through linear mixed models (LMMs) as function of categorical variables (individual inadequate TPI, arrival season, purchasing sites, and weights at purchase) and a continuous contextual variable (proportion of inadequate TPI in the batch). Also, the impact of morbidity (treated vs non treated) on ADG was investigated through linear regression model. Because performance and health data are typically underreported in commercial settings, data missingness was identified as a potential concern. Therefore, multiple imputation models were used. A total of 1084 calves had Brix % < 8.4 % giving a prevalence of 62.7 % of inadequate TPI. Individual calves with inadequate TPI gained 0.02 kg/d less than those with adequate TPI. Batch-level inadequate TPI prevalence was not associated with ADG difference in the sampled calves. Calves arriving to the facility during summer gained 80 g/d less than those arriving during fall. Calves treated at least once with antibiotic had lowered ADG by 7.2 kg throughout the production cycle compared to untreated calves. In conclusion, this study suggests that individual-level inadequate TPI assessed upon arrival in the facility, arrival season, and antibiotic treatments during the production cycle are associated with lowered ADG in veal calves.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"237 ","pages":"Article 106441"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143147668","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Streptococcus suis is an important pig pathogen that can cause severe disease in the post-weaning period. As there are no commercial vaccines available in the Netherlands, antibiotic treatment is often necessary to control disease. S. suis is regarded as one of the major causes of antibiotic prescription in weaned pigs, but scientific studies supporting this claim with quantitative data are lacking. The aim of this study was to obtain insight in, and to quantify usage of, antibiotics against S. suis in weaner pigs at sow farms in the Netherlands. Three sources of data were used, including 1) total antibiotic usage in weaner pigs in the Netherlands, as yearly reported by the Netherlands Veterinary Medicines Institute (SDa), and estimates from 2) pig veterinarians and 3) pig farmers on the relative amount of antibiotics prescribed against S. suis, via questionnaires. Information from the SDa on the total amount of antibiotic usage was combined with the estimates of the veterinarians to estimate the antibiotic usage against S. suis in weaner pigs. Our study shows that ∼90 % of the total amount of amoxicillin (AMOX) and ampicillin (AMPI) prescribed in weaner pigs is used for treatment of disease caused by S. suis (S. suis disease). Of all orally prescribed antibiotics against S. suis, AMOX comprises 85 % of the total absolute usage expressed by the mean defined daily dosage per animal farm (3.2 – 5.4 mean DDDAF). Furthermore, veterinarians reported that at farms with structural S. suis disease problems second choice antibiotics (AMOX, AMPI) are more often prescribed than at farms with incidental S. suis disease. All together, we estimated that S. suis disease accounts for about 1/3rd of the total antibiotic usage in weaner pigs. This study is the first to quantify antibiotic usage against S. suis in weaner pigs and shows that S. suis is a hotspot of antibiotic usage. This underlines the severity and relevance of S. suis disease and the need for alternative control measures.
猪链球菌是一种重要的猪病原体,可在断奶后引起严重疾病。由于荷兰没有商业疫苗,抗生素治疗通常是控制疾病所必需的。猪链球菌被认为是断奶仔猪抗生素处方的主要原因之一,但缺乏定量数据支持这一说法的科学研究。本研究的目的是了解并量化荷兰猪场断奶猪中抗猪链球菌抗生素的使用情况。使用了三个数据来源,包括:1)荷兰兽医研究所(SDa)每年报告的荷兰断奶猪抗生素总使用量,以及2)养猪兽医和3)养猪户通过问卷调查估计的猪链球菌抗生素处方相对量。来自SDa的抗生素使用总量信息与兽医的估计相结合,以估计断奶猪中猪链球菌的抗生素使用情况。我们的研究表明,断奶猪处方中阿莫西林(AMOX)和氨苄西林(AMPI)总量的约90 %用于治疗猪链球菌病(S. suis disease)引起的疾病。在所有针对猪链球菌的口服抗生素中,AMOX占每个动物养殖场平均限定日剂量表示的绝对总使用量的85% %(平均DDDAF 3.2 - 5.4)。此外,兽医报告说,在有结构性猪链球菌疾病问题的农场,第二选择抗生素(AMOX, AMPI)比在偶发猪链球菌疾病的农场更常被开处方。总之,我们估计猪链球菌病约占断奶猪抗生素总使用量的三分之一。本研究首次量化了猪链球菌在断奶猪中的抗生素使用情况,表明猪链球菌是抗生素使用的热点。这强调了猪链球菌病的严重性和相关性,以及采取替代控制措施的必要性。
{"title":"Quantification of antibiotic usage against Streptococcus suis in weaner pigs in the Netherlands between 2017 and 2021","authors":"Anita Dame-Korevaar , Chretien Gielen , Jobke van Hout , Martijn Bouwknegt , Lluís Fabà , Manouk Vrieling","doi":"10.1016/j.prevetmed.2024.106400","DOIUrl":"10.1016/j.prevetmed.2024.106400","url":null,"abstract":"<div><div><em>Streptococcus suis</em> is an important pig pathogen that can cause severe disease in the post-weaning period. As there are no commercial vaccines available in the Netherlands, antibiotic treatment is often necessary to control disease. <em>S. suis</em> is regarded as one of the major causes of antibiotic prescription in weaned pigs, but scientific studies supporting this claim with quantitative data are lacking. The aim of this study was to obtain insight in, and to quantify usage of, antibiotics against <em>S. suis</em> in weaner pigs at sow farms in the Netherlands. Three sources of data were used, including 1) total antibiotic usage in weaner pigs in the Netherlands, as yearly reported by the Netherlands Veterinary Medicines Institute (SDa), and estimates from 2) pig veterinarians and 3) pig farmers on the relative amount of antibiotics prescribed against <em>S. suis</em>, via questionnaires. Information from the SDa on the total amount of antibiotic usage was combined with the estimates of the veterinarians to estimate the antibiotic usage against <em>S. suis</em> in weaner pigs. Our study shows that ∼90 % of the total amount of amoxicillin (AMOX) and ampicillin (AMPI) prescribed in weaner pigs is used for treatment of disease caused by <em>S. suis</em> (<em>S. suis</em> disease). Of all orally prescribed antibiotics against <em>S. suis</em>, AMOX comprises 85 % of the total absolute usage expressed by the mean defined daily dosage per animal farm (3.2 – 5.4 mean DDDA<sub>F</sub>). Furthermore, veterinarians reported that at farms with structural <em>S. suis</em> disease problems second choice antibiotics (AMOX, AMPI) are more often prescribed than at farms with incidental <em>S. suis</em> disease. All together, we estimated that <em>S. suis</em> disease accounts for about 1/3rd of the total antibiotic usage in weaner pigs. This study is the first to quantify antibiotic usage against <em>S. suis</em> in weaner pigs and shows that <em>S. suis</em> is a hotspot of antibiotic usage. This underlines the severity and relevance of <em>S. suis</em> disease and the need for alternative control measures.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"235 ","pages":"Article 106400"},"PeriodicalIF":2.2,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142791777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-31DOI: 10.1016/j.prevetmed.2025.106444
Andrea Knörr , Xiao Zhou , Angela Bearth , Beatriz Garcia-Morante , Carla Correia-Gomes , Joaquim Segalés , Thomas Echtermann , Michael Siegrist
Background
Tail docking is still widely used in major European pig-producing countries despite efforts to ban it. The present study aimed to understand the attitudes and beliefs of pig farming professionals in Spain and Switzerland regarding tail biting and tail docking. For this, n = 275 Swiss, and n = 87 Spanish participants completed an online questionnaire regarding the issue of tail biting and docking in pigs and their attitudes and beliefs.
Results
Spanish participants predominantly kept docked pigs (n = 70, 80 %), whereas Swiss participants kept undocked pigs (n = 271, 99 %). While tail biting occurrences in the last two years were reported by most participants (n = 301, 83 %), the attitudes towards them differed: Spanish participants found the management of tail biting more challenging than Swiss participants. In addition, Spanish participants considered welfare to be better for docked pigs than for undocked pigs, whereas Swiss participants perceived the welfare of undocked pigs to be better. Similarly, Spanish participants showed a strong perception of lower production risks for docked pigs than for undocked pigs, a perception that could not be found in Swiss participants. Overall, Swiss participants saw more advantages in keeping long-tailed pigs and more possibilities to prevent tail biting than Spanish participants.
Conclusions
The results suggest that Spanish pig-farming professionals’ attitudes towards tail docking are dominated by the conviction that docking is a necessity that lowers production risks and ensures animal welfare. Future efforts attempting to enforce the prohibition on tail docking should not only attempt to overcome structural barriers, but also focus on communicating with and changing the perceptions of pig farming professionals. By tackling the reluctance to try non-docking, producers can gain more experience and confidence with raising long-tailed pigs. To create sustainable changes in tail-docking practices, in addition to optimising the environment for pigs, communication should focus on changing attitudes and reducing risk perceptions.
{"title":"Industry stakeholders attitudes and beliefs about tail biting and docking in pigs – A case study in Switzerland and Spain","authors":"Andrea Knörr , Xiao Zhou , Angela Bearth , Beatriz Garcia-Morante , Carla Correia-Gomes , Joaquim Segalés , Thomas Echtermann , Michael Siegrist","doi":"10.1016/j.prevetmed.2025.106444","DOIUrl":"10.1016/j.prevetmed.2025.106444","url":null,"abstract":"<div><h3>Background</h3><div>Tail docking is still widely used in major European pig-producing countries despite efforts to ban it. The present study aimed to understand the attitudes and beliefs of pig farming professionals in Spain and Switzerland regarding tail biting and tail docking. For this, <em>n</em> = 275 Swiss, and <em>n</em> = 87 Spanish participants completed an online questionnaire regarding the issue of tail biting and docking in pigs and their attitudes and beliefs.</div></div><div><h3>Results</h3><div>Spanish participants predominantly kept docked pigs (<em>n</em> = 70, 80 %), whereas Swiss participants kept undocked pigs (<em>n</em> = 271, 99 %). While tail biting occurrences in the last two years were reported by most participants (n = 301, 83 %), the attitudes towards them differed: Spanish participants found the management of tail biting more challenging than Swiss participants. In addition, Spanish participants considered welfare to be better for docked pigs than for undocked pigs, whereas Swiss participants perceived the welfare of undocked pigs to be better. Similarly, Spanish participants showed a strong perception of lower production risks for docked pigs than for undocked pigs, a perception that could not be found in Swiss participants. Overall, Swiss participants saw more advantages in keeping long-tailed pigs and more possibilities to prevent tail biting than Spanish participants.</div></div><div><h3>Conclusions</h3><div>The results suggest that Spanish pig-farming professionals’ attitudes towards tail docking are dominated by the conviction that docking is a necessity that lowers production risks and ensures animal welfare. Future efforts attempting to enforce the prohibition on tail docking should not only attempt to overcome structural barriers, but also focus on communicating with and changing the perceptions of pig farming professionals. By tackling the reluctance to try non-docking, producers can gain more experience and confidence with raising long-tailed pigs. To create sustainable changes in tail-docking practices, in addition to optimising the environment for pigs, communication should focus on changing attitudes and reducing risk perceptions.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"237 ","pages":"Article 106444"},"PeriodicalIF":2.2,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143147614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}