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Sources of Salmonella infection in pigs in the Netherlands: Epidemiological risk factors and subtyping-based source attribution 荷兰猪中沙门氏菌感染的来源:流行病学危险因素和基于亚型的来源归因
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-01-28 DOI: 10.1016/j.prevetmed.2026.106792
Hester Bloem , Indra Bergval , Tryntsje Cuperus , Maren Lanzl , Greetje Castelijn , Ben Wit , Marieke Opsteegh , Lapo Mughini-Gras
Effective Salmonella control in pigs requires understanding how the pathogen is introduced and spreads on farms. This study aimed to identify potential sources of Salmonella infection in pigs using both epidemiological and microbiological methods. A cross-sectional study was conducted on 148 fattening pig farms in the Netherlands. Porcine fecal samples were collected and tested for the presence of Salmonella, and a questionnaire on farm characteristics was completed. Risk factors significantly associated with Salmonella presence at farm-level were identified through logistic regression analysis. For source attribution based on microbial subtyping, serotyped Salmonella isolates obtained from the Dutch national laboratory surveillance system (2016–2023) were used. Pig isolates (n = 494) were attributed to nine putative sources (n = 4171 isolates) using the modified Dutch (mDM) and modified Hald (mHM) models.
A farm-level prevalence of 9.5 % (14/148; 95 % CI 5.3–15.4 %) was found. Cleaning the pens between batches (odds ratio [OR] 0.139, 95 % CI 0.030–0.625) and moving piglets at a later age to the fattening unit (in weeks, OR 0.538, 95 % CI 0.290–0.998) were significantly associated with reduced odds of Salmonella presence, whereas the presence of cattle on the farm increased the odds (OR 4.860, 95 % CI 1.346–17.544). Both mDM and mHM attributed most pig isolates to other pigs (mDM: 43.0 %; mHM: 72.6 %), followed by cattle (mDM: 22.6 %; mHM: 11.0 %) and broilers (mDM: 9.2 %; mHM: 5.0 %), as sources.
This study indicates pig-to-pig transmission as the main source of Salmonella in pigs and suggests that cattle may significantly contribute to Salmonella introduction into pig herds on multi-species farms.
有效控制猪的沙门氏菌需要了解病原体是如何在农场引入和传播的。本研究旨在利用流行病学和微生物学方法确定猪沙门氏菌感染的潜在来源。对荷兰148个育肥猪场进行了横断面研究。收集猪粪便样本,检测是否存在沙门氏菌,并完成农场特征问卷调查。通过logistic回归分析,确定了与沙门氏菌在农场水平存在显著相关的危险因素。对于基于微生物亚型的来源归属,使用了从荷兰国家实验室监测系统(2016-2023)获得的血清型沙门氏菌分离株。猪分离株(n = 494)采用改进的Dutch (mDM)和改进的Hald (mHM)模型归因于9个假定来源(n = 4171株)。农场水平的患病率为9.5 %(14/148;95 % CI 5.3-15.4 %)。清理批次之间的猪圈(比值比[OR] 0.139, 95 % CI 0.030-0.625)和将仔猪移至育猪场(以周为单位,比值比[OR] 0.538, 95 % CI 0.290-0.998)与沙门氏菌存在的几率降低显著相关,而在猪场饲养牛则增加了沙门氏菌存在的几率(比值比[OR] 4.860, 95 % CI 1.346-17.544)。mDM和mHM都将大多数猪分离株归因于其他猪(mDM: 43.0 %;mHM: 72.6 %),其次是牛(mDM: 22.6 %;mHM: 11.0 %)和肉鸡(mDM: 9.2 %;mHM: 5.0 %)。该研究表明,猪与猪之间的传播是猪中沙门氏菌的主要来源,并表明在多物种农场中,牛可能对沙门氏菌传入猪群有重要贡献。
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引用次数: 0
A new era of coccidiosis control: Eimeria and Clostridium perfringens dynamics in vaccinated broiler flocks after the ionophore phase-out in Norway 球虫病控制的新时代:挪威电离电剂逐步淘汰后接种肉鸡群中的艾美耳球虫和产气荚膜梭菌动态。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-01-15 DOI: 10.1016/j.prevetmed.2026.106786
Eva Lena Estensmo , Silje Granstad , Kim B. Stevens , Sokratis Ptochos , Marianne Økland , Mona Nordmark , Siri Kulberg Sjurseth , Sigrid Gossé , Magne Hansen , Adrian L. Smith , Damer P. Blake , Camilla Sekse , Øivind Øines
Norway discontinued the prophylactic use of coccidiostats in broiler production in 2016, and all broilers are now raised without the routine use of coccidiostats. As an alternative strategy to control coccidiosis, all broiler flocks in Norway are now routinely vaccinated at hatch with vaccines based on live attenuated Eimeria oocysts. In this study, we investigated the population dynamics and interactions of Eimeria spp. and Clostridium perfringens in Norwegian broiler flocks vaccinated against coccidiosis in field settings. We also explored how this may be influenced by farm management practices. Fresh pooled fecal samples were collected as part of a longitudinal time-series and through a case-control design from commercial broiler flocks diagnosed with coccidiosis, necrotic enteritis (NE) or both. Samples were analyzed using conventional and molecular methods targeting the relevant pathogens. Management data were analyzed using multivariable logistic regression models to identify factors associated with coccidiosis and NE. The occurrence of Eimeria oocysts showed varying dynamics over time across individual flocks and companies, and Eimeria species composition largely reflected the content of the vaccine used. Higher numbers of E. maxima and lower overall management scores were identified as risk factors associated with NE. Coccidiosis appeared to be well controlled under the current production practices, whereas NE seems to increase after the abolishment of coccidiostats. This may be related to the indirect effects of coccidiostats on Clostridium spp. and is a consequence that should be carefully monitored in any circumstance where there is a move towards the use of anticoccidial vaccines in broiler production.
挪威于2016年停止在肉鸡生产中预防性使用抗球虫药,现在所有肉鸡都在不常规使用抗球虫药的情况下饲养。作为控制球虫病的替代策略,挪威所有肉鸡群现在在孵化时常规接种基于减毒艾美耳球虫卵囊的疫苗。在本研究中,我们研究了在野外接种球虫疫苗的挪威肉鸡群中艾美耳球虫属和产气荚膜梭菌的种群动态和相互作用。我们还探讨了这可能受到农场管理实践的影响。作为纵向时间序列的一部分,通过病例对照设计,从诊断为球虫病、坏死性肠炎(NE)或两者兼有的商品肉鸡群中收集新鲜的合并粪便样本。针对相关病原体,采用常规方法和分子方法对样品进行分析。采用多变量logistic回归模型对管理数据进行分析,以确定球虫病和NE的相关因素。随着时间的推移,个别鸡群和公司的艾美耳球虫卵囊的发生表现出不同的动态,艾美耳球虫种类的组成在很大程度上反映了所使用疫苗的含量。较高的E. maxima数量和较低的总体管理评分被确定为与NE相关的危险因素。球虫病似乎在目前的生产实践下得到了很好的控制,而在取消球虫药后,NE似乎增加了。这可能与抗球虫药对梭状芽孢杆菌的间接作用有关,在肉鸡生产中使用抗球虫疫苗的任何情况下,都应仔细监测这一后果。
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引用次数: 0
Using herd frailty estimates from survival models in a mortality-based syndromic surveillance system 在以死亡率为基础的综合征监测系统中,利用生存模型估算种群脆弱程度。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-01-15 DOI: 10.1016/j.prevetmed.2026.106785
Jaden M. Carlson , T. Brendan Murphy , Luke O’Grady , Jonas Brock , Maria P. Guelbenzu-Gonzalo , David A. Graham , Guy McGrath , Jamie A. Tratalos , Rafael de Andrade Moral , Niamh Mimnagh , Niamh L. Field , John F. Mee , Damien J. Barrett , Elizabeth A. Lane , Conor G. McAloon
Syndromic surveillance, which monitors clinical or production data as potential indicators of disease, can complement existing diagnostic testing strategies for a more comprehensive surveillance system. Consistently recorded mortality data with established identification and traceability routes across cattle sectors could be useful indicators to monitor in a syndromic surveillance system. Ireland is progressing toward the eradication of bovine viral diarrhoea (BVD) virus following a programme initiated in 2013 to identify and remove calves that test positive for BVD. As the country prepares for BVD-free status under the EU Animal Health Law, stakeholders must consider strategies to detect possible re-emergence. Historical data from the eradication programme provides a unique opportunity to evaluate mortality-based syndromic surveillance for this purpose. This study aimed to develop a syndromic surveillance model based on calf mortality data and evaluate its use for early detection of BVD re-emergence in Ireland. For years 2014 through 2023, mixed-effects Cox proportional hazards models were built using calf mortality up to 100 days of age. Herd-level frailty estimates were extracted from these models for each year, which were then clustered to identify subgroups of herds with distinct temporal patterns in herd-level mortality hazard. Four separate thresholds were used to flag herds with increased calf mortality hazard. Overall, these flags demonstrated high specificity (86–92 %) but low sensitivity (11–22 %) for herd-level BVD status, suggesting that this approach alone would not reliably detect BVD re-emergence. Nonetheless, this method could support Ireland’s ability to achieve and sustain BVD-free status while providing valuable insights for similar surveillance efforts more broadly. This methodology is adaptable to other species, diseases, and syndromes, making it a versatile tool for animal health surveillance.
综合征监测监测临床或生产数据,作为疾病的潜在指标,可以补充现有的诊断检测战略,以建立一个更全面的监测系统。持续记录死亡率数据,并确定跨牛部门的识别和可追溯路线,可成为综合征监测系统中监测的有用指标。爱尔兰在2013年启动了一项方案,确定并清除BVD检测呈阳性的小牛,目前正朝着根除牛病毒性腹泻(BVD)病毒的方向取得进展。随着该国准备根据欧盟动物卫生法获得无bvd地位,利益攸关方必须考虑发现可能再次出现的战略。根除规划的历史数据为评估基于死亡率的综合征监测提供了独特的机会。本研究旨在建立一种基于小牛死亡率数据的综合征监测模型,并评估其在爱尔兰早期发现BVD再次出现的用途。从2014年到2023年,混合效应Cox比例风险模型的建立使用了100日龄以内的小牛死亡率。从这些模型中提取每年的牛群脆弱程度估计值,然后对这些估计值进行聚类,以确定在牛群死亡率风险中具有不同时间模式的牛群亚群。使用了四个单独的阈值来标记牛犊死亡风险增加的畜群。总的来说,这些标志显示出对群体水平BVD状态的高特异性(86-92 %)但低敏感性(11-22 %),这表明单独使用这种方法不能可靠地检测BVD再次出现。尽管如此,这种方法可以支持爱尔兰实现和维持无bvd状态的能力,同时为更广泛的类似监测工作提供有价值的见解。该方法适用于其他物种、疾病和综合征,使其成为动物卫生监测的通用工具。
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引用次数: 0
Use of dogs trained to search for wild boar carcasses in passive surveillance as the most effective tool to control the spread of African swine fever in Poland 在被动监测中使用经过训练的狗来搜索野猪尸体是控制非洲猪瘟在波兰传播的最有效工具。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-01-13 DOI: 10.1016/j.prevetmed.2026.106784
Mateusz Kruszyński , Magdalena Larska , Beata Banaszak , Jadwiga Świlak , Patryk Tarka , Zygmunt Pejsak , Małgorzata Juszkiewicz , Grzegorz Woźniakowski
The most effective proactive measures to combat the African swine fever virus (ASFV) and mitigate the financial losses associated with its spread to pig farms is to minimise its transmission within the wild boar population. The aim of the study was to compare traditional human ground search with alternative methods using specially trained detection dogs, hunting dogs and drones in locating and removing wild boar carcasses as the main source of ASFV infection. Most of wild boar carcasses 397 out of 400 (99.2 %) were found by the trained search dogs, while other 3 were located using hunting dogs. Also, the efficiency of carcass retrieval with hunting dogs was much lower than with trained dogs with 0.002 versus 2.08 ASFV RT-PCR positive WB carcasses found per search. Searches with drones, humans or mixed method were found unsuccessful. The search efficiency using dogs trained for this purpose was on average more than two and a half times higher than the values determined by the EFSA ASF exit strategy developed using the wild boar approach. The carcass retrieval by search dogs was associated with ASF seasonality in wild boar in the central Europe, however, was not affected by the harsher conditions of winter months. This is particularly important due to the ASFV ability to survive in low temperatures. The study revealed also local variation in the sampling efforts which could have affected effectivity of ASF passive surveillance. To our knowledge, the presented research is the first attempt to evaluate the use of dogs to locate wild boar carcasses as a key element of passive surveillance in ASF control.
与非洲猪瘟病毒(ASFV)作斗争并减轻其向猪场传播所造成的经济损失的最有效的主动措施是尽量减少其在野猪种群中的传播。该研究的目的是比较传统的人类地面搜索与使用经过特殊训练的探测犬、猎犬和无人机的替代方法,以定位和清除野猪尸体作为ASFV感染的主要来源。400具野猪尸体中有397具(99.2 %)是由训练有素的搜寻犬发现的,而其他3具是由猎犬找到的。此外,猎犬的尸体检索效率远低于训练犬,每次检索发现的ASFV RT-PCR阳性尸体为0.002只,而训练犬为2.08只。使用无人机、人工或混合方法进行搜索均未成功。为此目的而训练的狗的搜索效率平均比欧洲食品安全局使用野猪方法制定的非洲猪瘟出口战略确定的值高出2.5倍以上。在中欧,搜寻犬的尸体检索与野猪ASF的季节性有关,但不受冬季严酷条件的影响。由于非洲猪瘟病毒在低温下存活的能力,这一点尤为重要。该研究还揭示了取样工作的地方差异,这可能会影响非洲猪瘟被动监测的有效性。据我们所知,这项研究是首次尝试评估利用狗来定位野猪尸体作为非洲猪瘟控制被动监测的关键因素。
{"title":"Use of dogs trained to search for wild boar carcasses in passive surveillance as the most effective tool to control the spread of African swine fever in Poland","authors":"Mateusz Kruszyński ,&nbsp;Magdalena Larska ,&nbsp;Beata Banaszak ,&nbsp;Jadwiga Świlak ,&nbsp;Patryk Tarka ,&nbsp;Zygmunt Pejsak ,&nbsp;Małgorzata Juszkiewicz ,&nbsp;Grzegorz Woźniakowski","doi":"10.1016/j.prevetmed.2026.106784","DOIUrl":"10.1016/j.prevetmed.2026.106784","url":null,"abstract":"<div><div>The most effective proactive measures to combat the African swine fever virus (ASFV) and mitigate the financial losses associated with its spread to pig farms is to minimise its transmission within the wild boar population. The aim of the study was to compare traditional human ground search with alternative methods using specially trained detection dogs, hunting dogs and drones in locating and removing wild boar carcasses as the main source of ASFV infection. Most of wild boar carcasses 397 out of 400 (99.2 %) were found by the trained search dogs, while other 3 were located using hunting dogs. Also, the efficiency of carcass retrieval with hunting dogs was much lower than with trained dogs with 0.002 versus 2.08 ASFV RT-PCR positive WB carcasses found per search. Searches with drones, humans or mixed method were found unsuccessful. The search efficiency using dogs trained for this purpose was on average more than two and a half times higher than the values determined by the EFSA ASF exit strategy developed using the wild boar approach. The carcass retrieval by search dogs was associated with ASF seasonality in wild boar in the central Europe, however, was not affected by the harsher conditions of winter months. This is particularly important due to the ASFV ability to survive in low temperatures. The study revealed also local variation in the sampling efforts which could have affected effectivity of ASF passive surveillance. To our knowledge, the presented research is the first attempt to evaluate the use of dogs to locate wild boar carcasses as a key element of passive surveillance in ASF control.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"248 ","pages":"Article 106784"},"PeriodicalIF":2.4,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146012171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Relative accuracy of point-of-care tests to rule-in heartworm infection in clinically suspected dogs using Bayesian latent class modelling 使用贝叶斯潜类建模的临床疑似犬的心丝虫感染的点护理测试的相对准确性
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-01-05 DOI: 10.1016/j.prevetmed.2026.106783
P.J. Atkinson , C. Quimby , A. Datt , T.D. Nielsen , C.G.B. Caraguel
Our prospective cross-sectional survey of dogs from Western Fiji aimed to evaluate the fitness of common diagnostic test modalities to rule-in Dirofilaria immitis infection in patients with suggestive clinical history or signs. In the absence of a perfect reference standard, we used latent class modelling to evaluate the relative diagnostic accuracy of two point-of-care (POC) detection modalities – the modified Knott’s test (MKT) to detect circulating microfilaria and four antigen lateral flow immunoassays (LFI): Anigen Rapid Canine HW Ag Test® (Bionote Co.), SNAP® Heartworm RT Test (IDEXX Laboratories), trūRapid Heartworm (Heska), WITNESS Dirofilaria® (Zoetis Inc.). The tests’ fitness for ruling-in infection were compared using the likelihood ratios of a positive result (LR+). The performances of the MKT and the Anigen Rapid LFI to rule-in infection on fresh blood of clinically suspected dogs were moderate to strong (LR+=13.4, 95 %PCI: 6.7–114.6; LR+=20.2, 95 %PCI: 5.4–138.2; respectively) but not consistently different from each other. The Anigen Rapid, SNAP and truRapid tests consistently provided the strongest evidence to rule-in infection. The LR+ of the WITNESS test was approximately twelve times, nine times and two times lower than the SNAP, truRapid and Anigen Rapid LFIs respectively (Bayesian p-value 0.002, 0.004 and 0.02 respectively). Overall, a positive result from MKT or LFIs is suitable to rule-in infection in dogs raising clinical suspicion and would increase the post-test probability of infection similarly. If veterinarians are choosing between LFIs, they should favour either Anigen Rapid, SNAP and truRapid over WITNESS.
我们对来自斐济西部的狗进行前瞻性横断面调查,目的是评估常见诊断测试方式对有提示病史或体征的患者的免疫丝虫感染的适应性。在缺乏完善参考标准的情况下,我们使用潜在类别建模来评估两种即时检测(POC)检测方式的相对诊断准确性——用于检测循环微丝虫病的改良Knott试验(MKT)和四种抗原侧流免疫测定(LFI): Anigen Rapid Canine HW Ag test®(Bionote Co.)、SNAP®Heartworm RT test (IDEXX Laboratories)、trūRapid Heartworm (Heska)、WITNESS Dirofilaria®(Zoetis Inc.)。使用阳性结果的似然比(LR+)比较试验对感染的适用性。MKT和Anigen Rapid LFI对临床疑似犬新鲜血液感染的表现均为中强(LR+=13.4, 95 %PCI: 6.7-114.6; LR+=20.2, 95 %PCI: 5.4-138.2),但差异不一致。Anigen Rapid、SNAP和trurrapid检测始终为规则感染提供最有力的证据。WITNESS试验的LR+分别比SNAP、trurrapid和Anigen Rapid lfi低约12倍、9倍和2倍(贝叶斯p值分别为0.002、0.004和0.02)。总的来说,MKT或lfi的阳性结果适用于引起临床怀疑的犬的常规感染,并且同样会增加检测后感染的概率。如果兽医在lfi之间进行选择,他们应该选择Anigen Rapid、SNAP和trurrapid,而不是WITNESS。
{"title":"Relative accuracy of point-of-care tests to rule-in heartworm infection in clinically suspected dogs using Bayesian latent class modelling","authors":"P.J. Atkinson ,&nbsp;C. Quimby ,&nbsp;A. Datt ,&nbsp;T.D. Nielsen ,&nbsp;C.G.B. Caraguel","doi":"10.1016/j.prevetmed.2026.106783","DOIUrl":"10.1016/j.prevetmed.2026.106783","url":null,"abstract":"<div><div>Our prospective cross-sectional survey of dogs from Western Fiji aimed to evaluate the fitness of common diagnostic test modalities to rule-in <em>Dirofilaria immitis</em> infection in patients with suggestive clinical history or signs. In the absence of a perfect reference standard, we used latent class modelling to evaluate the relative diagnostic accuracy of two point-of-care (POC) detection modalities – the modified Knott’s test (MKT) to detect circulating microfilaria and four antigen lateral flow immunoassays (LFI): Anigen Rapid Canine HW Ag Test® (Bionote Co.), SNAP® Heartworm RT Test (IDEXX Laboratories), trūRapid Heartworm (Heska), WITNESS Dirofilaria® (Zoetis Inc.). The tests’ fitness for ruling-in infection were compared using the likelihood ratios of a positive result (LR<sup>+</sup>). The performances of the MKT and the Anigen Rapid LFI to rule-in infection on fresh blood of clinically suspected dogs were moderate to strong (LR<sup>+</sup>=13.4, 95 %PCI: 6.7–114.6; LR<sup>+</sup>=20.2, 95 %PCI: 5.4–138.2; respectively) but not consistently different from each other. The Anigen Rapid, SNAP and truRapid tests consistently provided the strongest evidence to rule-in infection. The LR<sup>+</sup> of the WITNESS test was approximately twelve times, nine times and two times lower than the SNAP, truRapid and Anigen Rapid LFIs respectively (Bayesian p-value 0.002, 0.004 and 0.02 respectively). Overall, a positive result from MKT or LFIs is suitable to rule-in infection in dogs raising clinical suspicion and would increase the post-test probability of infection similarly. If veterinarians are choosing between LFIs, they should favour either Anigen Rapid, SNAP and truRapid over WITNESS.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"248 ","pages":"Article 106783"},"PeriodicalIF":2.4,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145939814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A bayesian analysis of phage-based qPCR and liquid culture for the early detection of Mycobacterium avium subsp. paratuberculosis in young dairy calves 基于噬菌体qPCR和液体培养早期检测禽分枝杆菌亚种的贝叶斯分析。乳牛幼崽的副结核
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2025-12-29 DOI: 10.1016/j.prevetmed.2025.106781
José M. Hernández-Agudelo , Cristóbal Verdugo , Herman W. Barkema , Pamela Steuer , Carlos Tejeda , Fernando Ulloa , Miguel A. Salgado
Bovine paratuberculosis (PTB), caused by Mycobacterium avium subsp. paratuberculosis (MAP), is an endemic infectious disease causing significant economic losses, with infection typically occurring in the first months of life. However, early diagnostic in subclinical infected calves is challenging due to the paucibacillary nature and intermittent shedding of the pathogen, which limits the sensitivity (Se) of existing diagnostic tools. This study aimed to estimate and compare the diagnostic Se and specificity (Sp) of a Phage-Magnetic Separation (PhMS) qPCR assay against a qPCR-confirmed liquid culture for the early detection of MAP infection in young dairy calves. Using a Bayesian Latent Class Model (BLCM) that accounted for conditional dependence, we analyzed 528 fecal samples from dairy calves < 60 days of age from 39 commercial herds in Chile. The model revealed that both tests have comparable moderate median Se (PhMS = 45 %; culture = 51 %) and high median Sp (PhMS = 98 %; culture = 100 %) for MAP detection. However, tests were strongly negatively correlated in MAP-infected animals (correlation coefficient, ρDPhMS,Cult = −0.66; 95 % Posterior probability interval [PPI]: −0.91 to −0.12). This strong negative correlation indicates that the tests tend to detect different subsets of the infected population, making them complementary when used in a parallel testing strategy to maximize joint sensitivity (Sej). The estimated mean true within-herd prevalence in calves was 13 % (95 % PPI: 8–22 %). Additionally, the Sp of PhMS-qPCR decreased in high-prevalence herds, possibly due to passive shedding of the pathogen. Critically, leveraging their complementary nature, a parallel interpretation of the tests achieved a high combined Se of 92 % (95 % PPI: 53–100 %), while maintaining a high Sp of 97 %. In conclusion, PhMS-qPCR and qPCR-confirmed liquid culture are complementary diagnostic tools. Their combined use in a parallel testing strategy could provide a highly effective screening algorithm, making it a powerful approach for research settings aiming to maximize case detection.
牛副结核(PTB),由鸟分枝杆菌亚种引起。副肺结核(MAP)是一种地方性传染病,造成重大经济损失,感染通常发生在生命的头几个月。然而,亚临床感染小牛的早期诊断是具有挑战性的,因为缺乏细菌的性质和病原体的间歇性脱落,这限制了现有诊断工具的敏感性(Se)。本研究旨在评估和比较噬菌体磁分离(PhMS) qPCR检测与qPCR确认的液体培养对犊牛MAP感染早期检测的诊断性Se和特异性(Sp)。使用贝叶斯潜类模型(BLCM),我们分析了来自智利39个商业畜群的528只60日龄奶牛的粪便样本<; 。该模型显示,两种测试都具有相当的MAP检测中位数Se (PhMS = 45 %;培养= 51 %)和高中位数Sp (PhMS = 98 %;培养= 100 %)。然而,在map感染动物中,测试结果呈强负相关(相关系数,ρDPhMS,Cult = - 0.66; 95 %后验概率区间[PPI]: - 0.91 ~ - 0.12)。这种强烈的负相关表明,检测倾向于检测感染人群的不同亚群,使它们在并行检测策略中互补,以最大化关节敏感性(Sej)。估计犊牛群内平均真实患病率为13 %(95% % PPI: 8-22 %)。此外,PhMS-qPCR的Sp在高流行的畜群中下降,可能是由于病原体的被动脱落。至关重要的是,利用它们的互补性,对测试的平行解释获得了92 %(95 % PPI: 53-100 %)的高组合Se,同时保持了97 %的高Sp。总之,PhMS-qPCR和qpcr证实的液体培养是互补的诊断工具。它们在并行检测策略中的组合使用可以提供一种非常有效的筛选算法,使其成为旨在最大限度地发现病例的研究机构的有力方法。
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引用次数: 0
Demographics of free-roaming dogs in Guwahati, India: Assessing population characteristics and comparing population size estimation methods 印度古瓦哈蒂自由流浪狗的人口统计:评估种群特征和比较种群大小估计方法
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2025-12-25 DOI: 10.1016/j.prevetmed.2025.106773
Laura Cunha Silva , Parimala Mohanty , Reda Zahri , Salome Dürr , Harish Kumar Tiwari
India has the highest global burden of rabies, accounting for approximately 35 % of all human rabies deaths worldwide with free-roaming dogs (FRDs) playing a critical role in the spread of the disease. While several studies have assessed FRD demographics in India, none have focused on Northeast India, particularly Assam. This study 1) characterizes FRD demographics in two urban settings in Guwahati, Assam, 2) estimates FRD populations using Program MARK’s Huggin's heterogeneity models and the Application SuperDuplicates (AS), and 3) evaluates AS as a resource effective alternative to Huggin's heterogeneity models for population estimation. Photographic capture-recapture surveys were conducted in two distinct locations in Guwahati: a market area without defined boundaries and a gated university campus. We detected 183 and 141 unique FRDs at the market and campus sites, respectively. The FRD in the market area were significantly younger, exhibited lower sterilization rates, and tended to be in poorer physical condition compared to those in the campus area; differences in body condition and collar presence were not statistically significant. Population estimates using Huggin's heterogeneity models revealed a FRD population size of 252 individuals (using the Chao estimator in the Huggin’s model) at the market site, while campus estimates varied between 161 during morning transects and 153 during evening transects (using the Jackknife estimator) and with morning and evening combined (using the Chao estimator) of 164 FRD. The AS estimated 246 FRD in the market and 178 on campus. Since the AS only requires data from two transect surveys, all possible survey combinations were built to estimate the FRD population size via AS and over 70 % similarity was observed between all these AS estimates compared to Huggin's heterogeneity model results. Within the same urban setting, variations free-roaming dog population characteristics and estimates across study sites were likely based on differences in local environmental and socio-spatial factors. Application SuperDuplicates showed to be a reliable, efficient alternative to Huggin's heterogeneity models for estimating FRD populations, with compatibility above the 70 % threshold whilst requiring information from two surveys only.
印度是全球狂犬病负担最重的国家,约占全世界所有人类狂犬病死亡人数的35% %,而自由漫游的狗在疾病传播中发挥了关键作用。虽然有几项研究评估了印度的FRD人口统计数据,但没有一项研究关注印度东北部,特别是阿萨姆邦。本研究1)分析了阿萨姆邦古瓦哈提两个城市的FRD人口特征,2)使用Program MARK的Huggin异质性模型和应用超级重复(AS)估计FRD人口,3)评估AS作为人口估计的Huggin异质性模型的资源有效替代方案。在Guwahati的两个不同地点进行了摄影捕捉-再捕捉调查:一个没有明确边界的市场区域和一个封闭的大学校园。我们在市场和校园分别检测到183和141个独特的frd。与校园区相比,市场区FRD明显年轻化,杀菌率较低,体质较差;身体状况和领圈存在的差异无统计学意义。使用Huggin的异质性模型进行的种群估计显示,在市场现场,FRD的种群规模为252个(使用Huggin模型中的Chao估计器),而校园内的FRD种群规模在早上样带的161个和晚上样带的153个(使用Jackknife估计器)之间变化,早晚结合(使用Chao估计器)有164个FRD。AS估计市场上有246个FRD,校园里有178个。由于AS只需要来自两个样带调查的数据,因此建立了所有可能的调查组合来通过AS估计FRD种群规模,与Huggin的异质性模型结果相比,所有这些AS估计之间的相似性超过70% %。在相同的城市环境中,不同研究地点的自由流浪狗种群特征和估计值的变化可能是基于当地环境和社会空间因素的差异。应用superduplicate被证明是一种可靠、有效的替代Huggin的异质性模型来估计FRD种群,其兼容性高于70% %的阈值,同时只需要两次调查的信息。
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引用次数: 0
Frequency and risk factors of dogwalk incidents and injuries in agility dogs 敏捷犬遛狗事故及伤害的频率及危险因素。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2025-12-23 DOI: 10.1016/j.prevetmed.2025.106771
Leena Inkilä, Anna Boström, Heli K. Hyytiäinen
Approximately 5–12 % of agility dog injuries occur on the dogwalk, according to survey studies. The rate of falls and injuries related to dogwalk exposure is unknown. Here, a two-part retrospective online survey was conducted to collect data on dogwalk incidents and injuries in 1603 Finnish agility dogs (232 included in both parts) over the six months preceding participation in the study. Data was collected before and after a competition regulation update affecting dogwalk approaches. Risk factors were evaluated with multivariate logistic regression models. Fall(s) from the dogwalk were reported in 15.2 % of responses, close call(s) in 30.1 % and injury secondary to dogwalk incident in 3.7 % during six months. There were estimated 2.6 falls (95 % CI 2.4–2.9) and 0.6 injuries (95 % CI 0.4–0.7) per 1000 dogwalks (n = 1538). Among incidents, 5 % (86/1705) resulted in an injury. Significant risk factors for falls and/or other incidents included higher wither height (OR 1.33–1.74 per 10 cm) and greater exposure to the dogwalk (OR 1.03–1.06 per 10 dogwalks) (n = 452 to n = 1308). Age (OR 0.77–0.87 per year) and dogs’ higher competition level were significant protective factors for falls and/or other incidents (n = 452 to n = 1308). Border Collies (OR 2.73, p = 0.004), taller dogs (OR 1.43 per 10 cm, p = 0.033) and dogs of inexperienced handlers (p = 0.003) had an increased odds of injury (n = 1308). Reduction in the incidence after the regulation update was not detected. The current dogwalk poses a risk to agility dogs’ welfare, requiring further scientific studies to investigate safety improvements.
根据调查研究,大约5- 12% %的敏捷犬受伤发生在遛狗时。与遛狗相关的跌倒和受伤率尚不清楚。在这里,进行了一项两部分的回顾性在线调查,收集了1603只芬兰敏捷犬(两部分包括232只)在参与研究前六个月内遛狗事件和受伤的数据。数据收集之前和之后的竞争法规更新影响狗走方法。采用多因素logistic回归模型评价危险因素。在6个月内,因遛狗而跌倒的应答者占15.2% %,因近距离接触而受伤的应答者占30.1% %,因遛狗而受伤的应答者占3.7 %。每1000次遛狗(n = 1538)估计有2.6次跌倒(95 % CI 2.4-2.9)和0.6次受伤(95 % CI 0.4-0.7)。在事故中,5 %(86/1705)导致了伤害。跌倒和/或其他事件的重要危险因素包括更高的萎缩高度(or 1.33-1.74 / 10 cm)和更多的遛狗暴露(or 1.03-1.06 / 10遛狗)(n = 452至n = 1308)。年龄(OR 0.77-0.87 /年)和狗较高的竞技水平是跌倒和/或其他事件的显著保护因素(n = 452至n = 1308)。边境牧羊犬(0.004或2.73,p = ),高狗(每10 厘米或1.43,p = 0.033)和狗的经验处理程序(p = 0.003)的几率增加了损伤(n = 1308)。未检测到法规更新后发病率的降低。目前的遛狗对敏捷犬的福利构成了威胁,需要进一步的科学研究来调查安全性的改善。
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引用次数: 0
When beef cattle drink less: Automated water intake monitoring as an early warning for respiratory disease during the adaptation period at the fattening unit 当肉牛喝得少时:育肥单位在适应期间自动监测饮水量,作为呼吸系统疾病的预警。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2025-12-19 DOI: 10.1016/j.prevetmed.2025.106772
Luisa Magrin, Simone Dante, Barbara Contiero, Lorenzo Serva, Flaviana Gottardo, Giulio Cozzi
Bovine respiratory disease (BRD) remains the leading health and welfare challenge in intensively finished beef cattle. It is the primary cause of antimicrobial treatments and a major source of economic losses due to reduced performance, increased mortality, and high therapeutic costs. Early, non-invasive indicators of BRD are urgently needed to improve its timely detection and mitigate the negative impact on cattle health and farm economics. With a view to precision livestock farming, this study investigated whether the automatic recording of individual drinking behavior and water consumption could provide some useful indicators of early BRD detection during the critical adaptation period of beef cattle at the fattening unit. The study involved 92 Limousine cattle (64 bulls, 28 heifers) from six different batches imported from France between May 2021 and December 2022. An innovative electronic drinking station equipped with radio-frequency identification and flow sensors automatically recorded individual drinking events, water intake, and time spent drinking during the 4 weeks of adaptation at the fattening farm. During the same time period, individual cattle daily health checks were performed by the farm veterinarian, recording all therapeutic treatments for BRD. Forty-five of the 92 animals (49 %) received at least one treatment for BRD during the 4-week adaptation period. In most cases, the first treatment was administered within the first two weeks of arrival (11.2 ± 6.9 days). Animals treated two or more times for BRD exhibited persistently lower daily water intake compared with untreated animals (20.9 vs. 27.3 L/day, respectively), particularly during the first two weeks after arrival. Two days before treatment, affected animals showed a significant reduction in daily water intake compared with healthy ones, whereas daily drinking time and number of visits to the drinker remained unchanged. Risk analysis revealed that cattle with individual water intake below 20.8 L/day increased by over fourfold the odds ratio of developing BRD. Additionally, groups of beef cattle arriving during autumn–winter exhibited a higher BRD occurrence than those arriving in late spring or early summer. These outcomes encourage the use of automatic devices to monitor the individual drinking behaviour during the adaptation period, as they could help identify conditions in which animals may be at higher risk of developing respiratory diseases.
牛呼吸道疾病(BRD)仍然是精耕细作肉牛的主要健康和福利挑战。它是抗菌素治疗的主要原因,也是经济损失的主要来源,因为它降低了治疗效果、增加了死亡率和高昂的治疗费用。迫切需要BRD的早期非侵入性指标,以提高其及时发现并减轻对牛健康和农场经济的负面影响。本研究从畜禽精准养殖的角度,探讨了在育肥单元的关键适应期,个体饮水行为和饮水量的自动记录能否为早期发现BRD提供一些有用的指标。该研究涉及从2021年5月至2022年12月从法国进口的6批92头豪华牛(64头公牛,28头小母牛)。一个创新的电子饮水站配备了射频识别和流量传感器,在育肥场适应的4周内,自动记录个体饮水事件、饮水量和饮水时间。在同一时期,农场兽医对每头牛进行每日健康检查,记录所有BRD治疗。92只动物中有45只(49% %)在4周适应期接受了至少一次BRD治疗。在大多数病例中,第一次治疗在到达后的前两周内进行(11.2 ± 6.9天)。与未治疗的动物相比,接受两次或两次以上BRD治疗的动物表现出持续较低的日饮水量(分别为20.9和27.3 L/天),尤其是在抵达后的前两周。治疗前两天,受影响的动物与健康动物相比,每日饮水量显著减少,而每日饮水时间和对饮水者的访问次数保持不变。风险分析显示,个体饮水量低于20.8 L/天的牛患BRD的优势比增加了4倍以上。此外,秋冬季到达的肉牛群体比春末或初夏到达的肉牛群体表现出更高的BRD发生率。这些结果鼓励使用自动设备来监测适应期间的个体饮酒行为,因为它们可以帮助确定动物可能患呼吸道疾病风险较高的条件。
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引用次数: 0
Development of an Infectious Disease Vulnerability Index (IDVI) for dairy farms: A data-driven approach to assessing risk and informing biosecurity practices 为奶牛场制定传染病脆弱性指数(IDVI):一种数据驱动的评估风险和告知生物安全实践的方法
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2025-12-18 DOI: 10.1016/j.prevetmed.2025.106770
Johnbosco U. Osuagwu , Julia M. Smith , Scott C. Merrill
Dairy farms are vulnerable to a wide range of infectious diseases, which can have significant economic and public health consequences. However, there remains a lack of a robust, farm-level tool that assesses their disease vulnerability. The primary objective of this study was to develop and validate the Infectious Disease Vulnerability Index (IDVI) as a tool for assessing dairy farm vulnerability to disease, aimed at enhancing biosecurity strategies and prioritizing high-risk farms for targeted interventions. Survey data on biosecurity practices, farm management, and animal movement were analyzed using K-Prototypes clustering, dimensionality reduction, optimal cluster determination, stability assessment, and validation. The clustering analysis revealed three distinct farm clusters, characterized by low, medium, and high disease vulnerability index categories. Cluster quality was assessed using silhouette scores (mean = 0.69) and Davies-Bouldin Index (mean = 0.44), with bootstrap resampling (200 iterations) confirming stability, and Friedman’s Test showing statistically distinct risk clusters. Following permutation testing, the factors with the most impact on the infectious disease vulnerability clusters included specific farm characteristics such as organic status and the total number of dairy animals, animal movement practices including frequency of bull calf movements and the average number of heifers leaving the farm during a shipment, farm contacts including hunters and dead animal haulers, and farm biosecurity practices including farm equipment transport practices, engaging in dairy animal exhibitions, and not having quarantine facilities with water, feed, and air separated from other farm animals. The IDVI offers a promising measure of comparing disease risk profiles, validated through bootstrapped silhouette scoring, statistical analysis, and permutation importance analysis. By leveraging the IDVI, dairy farmers, veterinarians, and animal health authorities can identify high-risk farms, implement targeted interventions to improve biosecurity, reduce disease transmission, and consequently enhance their outbreak preparedness.
奶牛场容易受到各种传染病的影响,这可能会对经济和公共卫生产生重大影响。然而,仍然缺乏一个可靠的、农场层面的工具来评估它们的疾病易感性。本研究的主要目的是开发和验证传染病脆弱性指数(IDVI)作为评估奶牛场疾病脆弱性的工具,旨在加强生物安全战略并优先考虑高风险农场进行有针对性的干预。通过k - prototype聚类、降维、最优聚类确定、稳定性评估和验证,对生物安全实践、农场管理和动物运动的调查数据进行了分析。聚类分析显示了三个不同的农场集群,以低、中、高疾病易感性指数类别为特征。聚类质量采用剪影评分(均值= 0.69)和Davies-Bouldin指数(均值= 0.44)进行评估,自举重新抽样(200次迭代)确认稳定性,弗里德曼检验显示具有统计学差异的风险聚类。经过排列测试,对传染病脆弱性集群影响最大的因素包括特定的农场特征,如有机状况和奶牛总数,动物运动做法,包括公牛运动频率和运输期间离开农场的小母牛平均数量,农场接触,包括猎人和死亡动物搬运工,以及农场生物安全做法,包括农场设备运输做法。从事乳品动物展览,未设置与其他农场动物隔离的水、饲料、空气的检疫设施的。IDVI提供了一种比较疾病风险概况的有希望的方法,通过自举轮廓评分、统计分析和排列重要性分析进行验证。通过利用IDVI,奶农、兽医和动物卫生当局可以确定高风险农场,实施有针对性的干预措施,以改善生物安全,减少疾病传播,从而加强疫情防范。
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Preventive veterinary medicine
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