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Global impact of antimicrobial growth promoters on livestock productivity: A meta-analysis for economic modeling 抗菌生长促进剂对牲畜生产力的全球影响:经济模型的荟萃分析
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-05-01 Epub Date: 2025-11-25 DOI: 10.1016/j.prevetmed.2025.106754
Alejandro Acosta , Katia Maria Cardinal , Francesco Nicolli , Fabiola Onofrio , Junxia Song
The use of Antimicrobial Growth Promoters (AGPs) in livestock production is under increasing scrutiny due to concerns about Antimicrobial Resistance (AMR). However, the economic consequences of AGPs withdrawal remain insufficiently quantified, partly because globally representative estimates of their effects on productivity are lacking. This study addresses this gap through a systematic review and meta-analysis evaluating the impact of AGPs on broilers, pigs, and cattle across diverse production settings. Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, we screened 95 studies encompassing 128 trial observations published between 2000 and 2023, covering diverse geographic regions, income levels, and antimicrobial classes. Funnel plot analysis and Egger’s test were used to detect publication bias. AGPs significantly improved Average Daily Gain (ADG) in broilers (1.78 g/day), pigs (28.15 g/day), and cattle (30 g/day); and improved Feed Conversion Ratio (FCR) in broilers (-0.05) and pigs (-0.09). Feed Efficiency (FE) in cattle also improved (0.0043). Regional differences in ADG improvement were notable in broilers. For broiler production, FCR effects varied significantly according to antimicrobial importance, with Critically Important Antimicrobials (CIAs) showing the largest effect sizes. The study revealed significant data gaps in the available scientific evidence, which limit the direct use of current findings for comprehensive economic modelling. Nevertheless, the results provide key parameters to inform the design of economic models assessing the costs and benefits of AGP withdrawal in livestock production systems.
由于对抗菌素耐药性(AMR)的担忧,在畜牧生产中使用抗菌素生长促进剂(AGPs)受到越来越多的审查。然而,取消agp的经济后果仍然没有充分量化,部分原因是缺乏对其对生产力影响的全球代表性估计。本研究通过系统回顾和荟萃分析来评估不同生产环境下AGPs对肉鸡、猪和牛的影响,从而解决了这一空白。根据系统评价和荟萃分析的首选报告项目(PRISMA)指南,我们筛选了95项研究,包括2000年至2023年间发表的128项试验观察结果,涵盖了不同的地理区域、收入水平和抗菌药物类别。采用漏斗图分析和Egger检验检测发表偏倚。AGPs显著提高肉鸡(1.78 g/d)、猪(28.15 g/d)和牛(30 g/d)的平均日增重(ADG);肉鸡和猪的饲料系数分别为-0.05和-0.09。牛的饲料效率(FE)也显著提高(0.0043)。肉鸡平均日增重改善的区域差异显著。在肉鸡生产中,不同抗菌素对饲料转化率的影响差异显著,其中关键重要抗菌素(CIAs)的影响最大。该研究揭示了现有科学证据中存在的重大数据缺口,这限制了将当前研究结果直接用于综合经济建模。尽管如此,研究结果为评估畜牧业生产系统中AGP退出的成本和收益的经济模型设计提供了关键参数。
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引用次数: 0
Mapping cystic echinococcosis in Italian cattle: A spatiotemporal analysis of surveillance data (2019–2023) 绘制意大利牛囊性棘球蚴病:监测数据的时空分析(2019-2023)
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-05-01 Epub Date: 2026-02-11 DOI: 10.1016/j.prevetmed.2026.106788
Emma Carter , Mahbod Entezami , Paola Pepe , Laura Rinaldi , Joaquin M. Prada , Antonio Bosco
Cystic echinococcosis (CE), caused by Echinococcus granulosus sensu lato, is a neglected zoonotic disease with considerable economic and public health impacts. In Italy, higher CE prevalence has historically been observed in southern and insular regions, but recent data on spatial and temporal patterns are scarce. While cattle are not a source of transmission, they serve as useful indicators of regional prevalence. This study assessed the spatial and temporal distribution of CE in cattle across nine regions of central, southern, and insular Italy from 2019 to 2023. A total of 4441 samples were collected during routine abattoir inspections, and infected animals and farms were identified via post-mortem examination. A Bayesian spatial model with a temporal component was used to estimate relative risk (RR) at the provincial level. Overall prevalence was 29.6 % (95 % CI: 28.2–30.9 %). Sardinia exhibited the highest prevalence (67.8 %), while Apulia had the lowest (24.0 %). Several provinces in Sardinia and Sicily consistently appeared as high-risk areas, with RR exceeding 2.0 in some years. In contrast, provinces in Molise and Apulia showed lower or near-average risk. A temporal peak was observed in 2020, followed by a decline to near-neutral levels by 2023. These findings align with previous studies highlighting the burden of CE in southern and insular Italy and underscore considerable spatial heterogeneity. Continued surveillance, application of proven control strategies (e.g. dog deworming, sheep vaccination), and improved diagnostics are essential to reducing CE burden and informing targeted interventions in endemic regions.
Surveillance reveals marked CE prevalence heterogeneity across Italian regions.
Sardinia and Sicily show the highest burden of CE in slaughtered cattle.
CE prevalence has increased compared to earlier studies in the same regions.
Cystic echinococcosis,Epidemiology,Surveillance,Modelling,Spatial Modelling
囊性棘球蚴病(CE)是一种被忽视的人畜共患疾病,由细粒棘球绦虫引起,对经济和公共卫生造成重大影响。在意大利,历史上观察到南部和岛屿地区的CE患病率较高,但最近关于空间和时间模式的数据很少。虽然牛不是传播源,但它们是区域流行情况的有用指标。该研究评估了2019年至2023年意大利中部、南部和岛屿9个地区牛CE的时空分布。在常规屠宰场检查期间共收集了4441个样本,并通过尸检确定了受感染的动物和农场。采用带时间分量的贝叶斯空间模型估算各省相对危险度。总患病率为29.6 %(95 % CI: 28.2-30.9 %)。撒丁岛患病率最高(67.8% %),普利亚最低(24.0% %)。撒丁岛和西西里岛的几个省份一直是高风险地区,某些年份的风险比超过2.0。相比之下,莫利塞省和普利亚省的风险较低或接近平均水平。在2020年观察到一个短暂的峰值,随后到2023年下降到接近中性的水平。这些发现与先前的研究一致,强调了意大利南部和岛屿的CE负担,并强调了相当大的空间异质性。持续监测、应用经证实的控制策略(如犬驱虫、绵羊疫苗接种)和改进诊断对于减轻麻疹负担和在流行地区通报有针对性的干预措施至关重要。监测显示意大利各地区CE患病率存在明显的异质性。撒丁岛和西西里岛的屠宰牛的CE负担最高。与同一地区的早期研究相比,CE患病率有所增加。囊性包虫病,流行病学,监测,模型,空间模型
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引用次数: 0
Knowledge, attitudes, and practices associated with antimicrobial use and antimicrobial resistance among livestock farmers in Botswana 博茨瓦纳畜牧农民与抗菌素使用和抗菌素耐药性相关的知识、态度和做法
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-05-01 Epub Date: 2026-02-07 DOI: 10.1016/j.prevetmed.2026.106804
Obuile O. Raboloko , Nametso D. Tlhako , Judah O. Lekgowe , Gregory T. Rakobe , Jonathan Strysko , Laurel Redding , Naledi Mannathoko , Kitso Mokgwathi , Tlhalefo D. Ntereke , Teresia Gatonye , Tshiamo Zankere , Basiamisi V.E. Segwagwe , Ebbing Lautenbach , Brianna E. Parsons , Solomon S. Ramabu

Introduction

Improper antimicrobial use (AMU) in livestock production is a key driver of antimicrobial resistance (AMR). Despite this, data on AMU among livestock farmers in low- and middle-income countries remains limited. The present study assessed knowledge, attitudes, and practices (KAP) regarding AMU and AMR amongst livestock farmers in Botswana.

Methods

A cross-sectional Knowledge, Attitudes, and Practices (KAP) survey was conducted among livestock farmers in southern Botswana, with participant recruitment facilitated by district veterinary service officers. Informed consent was obtained from all participants and surveys were administered by trained research personnel using visual aids to enhance participants recall. Responses to open-ended survey questions assessing knowledge were graded on a standardized 0–5 scale using a rubric while attitude and behavior questions were assessed using binary Yes/No responses.

Results

A total of 191 farmers participated in the study (71 % male; median age 52 years; median farming experience 14 years). All farmers (100 %,191/191), reported using either antimicrobials or anthelmintics (ivermectin), in the preceding 12 months, accounting for a total of 3322 treatment episodes. Tetracyclines were the most commonly used antimicrobials (53 %,1756/3322), followed by sulphonamides (18 %, 34/191). Cephalosporin, fluoroquinolone and aminoglycoside use was not reported. The farmers, who primarily reared cattle, small ruminants, and chickens, most commonly procured antimicrobials and anthelmintics at agriculture supply stores (91 %,174/191) typically with the guidance of veterinarians or animal health technician (veterinary paraprofessionals), but without a prescription from the veterinarians. Most farmers (66 %,127/191) used antimicrobials for treatment purpose, mainly to treat enteric illness. A total of 34 % of farmers (64/191) reported using antimicrobials for prophylactic purposes. Knowledge about the principles of prudent AMU was generally good although awareness of AMR was limited.

Conclusion

AMU was relatively common among livestock farmers in southern Botswana, primarily for treatment of diseases, with tetracyclines being the most commonly used antimicrobials. Overall, farmers demonstrated generally good knowledge about the principles of prudent AMU. However, comprehensive knowledge of AMR was sub-optimal, reaffirming the need for policy interventions to enhance antimicrobial stewardship in the livestock sector.
畜牧业生产中抗生素使用不当(AMU)是抗生素耐药性(AMR)的一个关键驱动因素。尽管如此,低收入和中等收入国家畜牧农民的AMU数据仍然有限。本研究评估了博茨瓦纳畜牧农民关于AMU和AMR的知识、态度和实践(KAP)。方法在博茨瓦纳南部的畜牧农民中开展了一项知识、态度和实践(KAP)横断面调查,由地区兽医服务官员协助招募参与者。获得了所有参与者的知情同意,调查由训练有素的研究人员使用视觉辅助工具进行管理,以提高参与者的回忆。对开放式调查中评估知识的问题的回答使用一个标准的0-5分量表进行评分,而态度和行为问题则使用二元是/否回答进行评估。结果共有191名农民参与研究,其中71%为男性( %),平均年龄52岁,平均农业经验14年。所有农民(100% %,191/191)报告在过去12个月中使用了抗菌剂或驱虫药(伊维菌素),总共治疗了3322次。四环素类药物是最常用的抗菌素(53 %,1756/3322),其次是磺胺类药物(18 %,34/191)。头孢菌素、氟喹诺酮和氨基糖苷类药物的使用未见报道。主要饲养牛、小反刍动物和鸡的农民最常在农业用品商店(91 %,174/191)采购抗菌剂和驱虫药,通常在兽医或动物卫生技术人员(兽医辅助专业人员)的指导下,但没有兽医的处方。大多数农民(66 %,127/191)将抗菌素用于治疗目的,主要用于治疗肠道疾病。共有34% %的农民(64/191)报告为预防目的使用抗菌素。尽管对抗菌素耐药性的认识有限,但对审慎抗菌素的原则的了解总体上是好的。结论在博茨瓦纳南部的畜牧养殖户中,amu较为常见,主要用于疾病治疗,其中四环素是最常用的抗菌素。总体而言,农民普遍表现出对审慎农牧原则的良好了解。然而,对抗菌素耐药性的全面了解并不理想,这再次表明需要采取政策干预措施,以加强畜牧业抗菌素管理。
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引用次数: 0
Modelling factors associated with the probability of seeking traditional care after dog bites in Sierra Leone 模拟与塞拉利昂狗咬伤后寻求传统护理的可能性相关的因素。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-04-01 Epub Date: 2026-02-03 DOI: 10.1016/j.prevetmed.2026.106803
Philip P. Mshelbwala , Roland Suluku , Anayochukwu E. Anyasodor , Oyinkansola Fadiji , Andrew M. Adamu , Solomon W. Audu , Claude T. Sabeta , Charles E. Rupprecht , Kinley Wangdi
Evidence suggests a rising incidence of dog bites in Sierra Leone despite ongoing efforts to prevent rabies. However, little is known about the factors influencing the decision to seek medical care following a dog bite. To address this gap, we developed a probabilistic model to examine factors associated with the likelihood of seeking traditional care in Sierra Leone. Among the 2558 respondents who completed the survey, 31 % (782/2558) indicated that they would seek traditional care after a dog bite. The posterior distributions of our model estimates indicated that the probability of seeking traditional care was higher among respondents with lower levels of education, those residing in rural areas, individuals lacking knowledge about rabies virus transmission and its hosts, and those who owned vaccinated dogs. Conversely, respondents living in locations with a livestock officer or veterinary establishment had lower odds of seeking traditional remedies compared with those uncertain about access. We observed a negative relationship between the percentage of health facilities and the probability of seeking traditional care, with higher percentages associated with a decreased likelihood of seeking traditional remedies. We also found regional variation in the probability of seeking traditional care. Respondents in the Eastern and Western Area were less likely to seek traditional remedies than those in the Northern and Southern Provinces. These findings highlight the need for targeted educational campaigns to raise awareness about rabies and the importance of timely medical care after exposure. Improving healthcare access in rural areas and fostering collaboration with traditional healers are also essential for reducing reliance on traditional care and strengthening rabies prevention and control efforts.
有证据表明,尽管正在努力预防狂犬病,塞拉利昂的狗咬伤发生率仍在上升。然而,人们对影响被狗咬伤后就医决定的因素知之甚少。为了解决这一差距,我们开发了一个概率模型来检查与塞拉利昂寻求传统护理的可能性相关的因素。在完成调查的2558名受访者中,31% %(782/2558)表示他们在被狗咬伤后会寻求传统护理。模型估计的后验分布表明,在受教育程度较低、居住在农村地区、缺乏狂犬病病毒传播及其宿主知识以及拥有接种过狂犬病疫苗的狗的受访者中,寻求传统护理的概率较高。相反,与那些不确定能否获得传统疗法的人相比,生活在有畜牧官员或兽医机构的地方的受访者寻求传统疗法的几率较低。我们观察到卫生设施的百分比与寻求传统护理的可能性之间存在负相关关系,百分比越高,寻求传统疗法的可能性越低。我们还发现在寻求传统护理的可能性上存在地区差异。东部和西部地区的回答者比北部和南部省份的回答者更不可能寻求传统疗法。这些发现突出表明,有必要开展有针对性的教育活动,提高人们对狂犬病的认识,以及在接触狂犬病后及时进行医疗护理的重要性。改善农村地区获得卫生保健的机会并促进与传统治疗师的合作,对于减少对传统护理的依赖和加强狂犬病预防和控制工作也至关重要。
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引用次数: 0
Lessons learned from a pilot dog rabies vaccination model in Kinshasa and Kongo-Central, Democratic Republic of the Congo 从刚果民主共和国金沙萨和刚果中部的犬类狂犬病疫苗接种试点模式中吸取的经验教训。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-04-01 Epub Date: 2026-02-04 DOI: 10.1016/j.prevetmed.2026.106789
Eric Kazadi-Kawaya , Blaise Mbiala Vodiasilua , Didier Mwanangombe Makopa , Christian Bakebidio Kanda , Gilby Situtala Benina , Serge Lwange Mufolo , Prisca Kabangu Nsimba , Christian Maheshe Murhula , Madimba-Kapanga
The Democratic Republic of the Congo (DRC) has set out a plan to eliminate dog-transmitted human rabies by 2033. The 50 million US dollar plan, 65 % of which is allocated to free vaccinations, has been difficult to fund. A study in three DRC sites (Mont-Ngafula in Kinshasa and Matadi and Muanda in Kongo-Central) aimed to explore an affordable, cost-effective local routine vaccination system. A survey was conducted in dog-owning households at each site regarding socioeconomic status, awareness of rabies and the characteristics and vaccination status of dogs. Then veterinary service accessibility, affordability and resources were assessed. Finally, a pilot of a routine vaccination service was implemented. Using R software, a logistic regression was performed to explore factors influencing rabies vaccination. Factors influencing vaccination included socio-economic status, dog characteristics, and the affordability of vaccinations. The cost of vaccinations (25–30 USD in Mont-Ngafula, 10–15 USD in Matadi, 7 USD in Muanda) was two to three times more expensive than owners considered affordable (7–9 USD, 1–5 USD, 2–6 USD). Geographical distribution of providers was poor and resources to vaccinate dogs routinely were inadequate. A pilot programme supplied vaccines and accessories to public veterinary services, expanding their geographic coverage by setting up temporary vaccination points and charging affordable costs (4 USD in Matadi and Muanda, and 5 USD in Mont-Ngafula). This increased adherence among dog owners, though the response varied between sites. The study offers useful insights into the key considerations for successfully implementing a cost-effective and affordable routine vaccination service at local level.
刚果民主共和国(DRC)制定了一项计划,到2033年消除狗传播的人类狂犬病。这项5000万美元的计划,其中65% %分配给免费疫苗接种,一直难以筹措资金。在刚果民主共和国的三个地点(金沙萨的恩加富拉山和刚果中部的马塔迪和穆安达)开展的一项研究旨在探索一种负担得起的、具有成本效益的地方常规疫苗接种系统。对每个站点的养狗家庭进行了关于社会经济状况、狂犬病意识以及狗的特征和疫苗接种情况的调查。然后对兽医服务的可及性、可负担性和资源进行评估。最后,实施了常规疫苗接种服务试点。采用R软件进行logistic回归,探讨影响狂犬病疫苗接种的因素。影响疫苗接种的因素包括社会经济地位、狗的特征和疫苗接种的可负担性。接种疫苗的费用(蒙-恩加弗拉25-30美元,马塔迪10-15美元,穆安达7美元)比业主认为负担得起的费用(7-9美元,1-5美元,2-6美元)贵两到三倍。提供者的地理分布很差,常规给狗接种疫苗的资源不足。一项试点方案为公共兽医服务提供疫苗和附件,通过设立临时疫苗接种点和收取可负担费用(在马塔迪和穆安达收取4美元,在恩加弗拉山收取5美元)扩大其地理覆盖范围。这增加了狗主人的依从性,尽管不同地点的反应不同。这项研究为在地方一级成功实施具有成本效益和负担得起的常规疫苗接种服务的关键考虑因素提供了有用的见解。
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引用次数: 0
Cost-benefit analysis of swine influenza a vaccination in wean-to-finish production setting in the United States 猪流感疫苗在美国从断奶到育肥生产环境中的成本效益分析。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-04-01 Epub Date: 2026-02-06 DOI: 10.1016/j.prevetmed.2026.106806
Dana C. Pittman Ratterree , Robert Ohsfeldt , Sapna Chitlapilly Dass , Martial L. Ndeffo-Mbah
Swine influenza virus A (SIV-A) is endemic in hog farms globally, causing significant economic losses to the swine industry. While vaccination is a recommended control strategy, its economic value in specific production phases remains under-evaluated. This study investigated the economic viability of SIV-A vaccination in a U.S. wean-to-finish commercial farm using a stochastic epidemic model. A cost-benefit analysis was performed to estimate the Benefit-Cost Ratio (BCR), Net Present Value (NPV), and Return on Investment (ROI) of swine vaccination. In the absence of vaccination, the model predicted a high within-farm attack rate of approximately 82.5 % (95 % Confidence Interval (CI): 81 % - 0.84 %). Economic analysis showed that the profitability of SIV-A vaccination was highly dependent on vaccine efficacy. Vaccine efficacy below 70 % was shown to be not economically viable, yielding negative NPV and BCR below 1. Conversely, vaccination with ≥ 80 % efficacy was profitable, with BCRs ranging from 1.54 (95 % CI: 1.538, 1.54) to 4.09 (95 % CI: 4.082, 4.092) and net profits varying from US$0.90 ( 95 % CI: US$0.79, US$1.02) per pig up to US$3.41 (95 %CI: US$3.40, US$3.41) per pig. Vaccination against SIV-A in wean-to-finish settings was shown to be an economically favorable intervention when the vaccine is highly efficacious against the circulating SIV-A subtype. Sensitivity analysis indicated that vaccine efficacy, the cost of vaccination, and influenza-induced mortality rates were the most critical drivers determining the economic success of the program.
甲型猪流感病毒(SIV-A)在全球养猪场流行,给养猪业造成重大经济损失。虽然疫苗接种是一种推荐的控制策略,但其在特定生产阶段的经济价值仍未得到充分评价。本研究使用随机流行病模型调查了美国一个从断奶到育肥的商业农场接种SIV-A疫苗的经济可行性。采用成本效益分析方法,估算猪疫苗接种的效益成本比(BCR)、净现值(NPV)和投资回报率(ROI)。在没有接种疫苗的情况下,该模型预测猪场内的高发病率约为82.5 %(95 %置信区间(CI): 81 % - 0.84 %)。经济分析表明,SIV-A疫苗接种的盈利能力高度依赖于疫苗的效力。疫苗效力低于70% %在经济上不可行,NPV为负,BCR低于1。相反,接种≥ 80 %的疫苗是有利可图的,bcr范围从1.54(95 %CI: 1.538, 1.54)到4.09(95 %CI: 4.082, 4.092),净利润从每头猪0.90美元(95 %CI: 0.79美元,1.02美元)到3.41美元(95 %CI: 3.40美元,3.41美元)不等。当疫苗对循环SIV-A亚型非常有效时,在断奶至结束的环境中接种SIV-A疫苗被证明是一种经济上有利的干预措施。敏感性分析表明,疫苗效力、疫苗接种成本和流感引起的死亡率是决定该计划经济成功的最关键因素。
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引用次数: 0
Determinants of variation in epidemiological parameters for African Swine Fever virus 非洲猪瘟病毒流行病学参数变异的决定因素。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-04-01 Epub Date: 2025-11-28 DOI: 10.1016/j.prevetmed.2025.106758
Marian Talbert , Abigail Feuka , Lara Zipperer , Ryan S. Miller , Kim M. Pepin
African Swine Fever (ASF) is an infectious reportable disease of swine that can have devastating consequences for pork producers and consumers. ASF virus can persist in either domestic or wild swine through several epidemiological cycles. This has led to a wide variety of epidemiological traits, making it challenging to plan effective surveillance and mitigation strategies. Here, we compile and analyze data from experimental infections of ASF virus variants from genotype II that have been reported in peer-reviewed publications. We provide descriptive summaries of the distributions of epidemiological parameters such as incubation period, infectious period, mortality rate, and R0 and develop predictive models that explain the variation in these quantities based on detection assays and other experimental design features. Our results provide a comprehensive perspective of estimates of epidemiological parameters for ASFV, allowing for increased transparency in accounting for parameter uncertainty in ASF preparedness modeling. Our meta-analysis also provides insight on knowledge gaps and study design issues that could be addressed by future experimentation.
非洲猪瘟(ASF)是一种可报告的猪传染性疾病,可对猪肉生产者和消费者造成毁灭性后果。非洲猪瘟病毒可通过几个流行病学周期在家猪或野猪中持续存在。这导致了各种各样的流行病学特征,使规划有效的监测和缓解战略具有挑战性。在这里,我们汇编和分析了同行评议出版物中报道的ASF病毒基因型变异的实验感染数据。我们提供了流行病学参数(如潜伏期、传染期、死亡率和R0)分布的描述性摘要,并建立了预测模型,以解释基于检测分析和其他实验设计特征的这些数量的变化。我们的研究结果为非洲猪瘟流行病学参数的估计提供了一个全面的视角,从而提高了在非洲猪瘟防范建模中考虑参数不确定性的透明度。我们的荟萃分析还提供了对知识差距和研究设计问题的见解,这些问题可以通过未来的实验来解决。
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引用次数: 0
Stability and validation of a bulk tank milk-based model to estimate within-herd bovine leukemia virus prevalence in dairy herds 在奶牛群中估计牛白血病病毒流行的大罐牛奶模型的稳定性和有效性。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-04-01 Epub Date: 2026-01-31 DOI: 10.1016/j.prevetmed.2026.106790
Simon Bourassi , Emily John , J.Trenton McClure , Emilia Bourassi , Greg Keefe , Shawn Mckenna , John VanLeeuwen , Henrik Stryhn
Bovine leukemia virus (BLV) causes enzootic bovine leukosis and can lead to significant economic losses in dairy herds. Accurate estimation of within-herd prevalence is an essential step for effective continuous surveillance and control. The objectives of this study were: (1) to build a statistical model predicting within-herd BLV prevalence using Bulk Tank Milk (BTM) ELISA antibody titers, (2) to assess the temporal stability of this model over three years, and (3) to explore the relationship between mean individual cow antibody titers and BTM results.
A convenience sample of 30 dairy herds in the Canadian Maritimes was studied. Three years of bi-monthly BTM samples were collected to measure the BTM ELISA antibody titers. Individual ELISA testing of cows contributing to BTM was performed annually for three years, permitting estimation of the true within-herd prevalence. Among the 30 herds, 1453 cows tested BLV-positive in Year 1, 899 in Year 2, and 760 in Year 3. Mean within-herd prevalence were 42 % (SD 24 %), 31 % (SD 20 %), and 29 % (SD 20 %) in Year 1, 2, and 3, respectively.
Seven univariable linear regression models for true within-herd prevalence were built, with predictors consisting of single BTM results or averages from two or three rounds of BTM results in proximity to the time of individual ELISA testing. The model using the average of two BTM samples collected two months apart as a predictor prevalence in the herd was selected as the best model based on the highest R² = 0.91 and Predictive R² = 0.90. Model predictions showed strong agreement with observed within-herd prevalence in subsequent years (concordance correlation coefficients 0.94–0.98), indicating temporal stability. Mean individual cow antibody titers were strongly correlated with BTM antibody levels (r = 0.95).
This study presents a practical, stable, and cost-effective approach to estimate and monitor BLV within-herd prevalence using BTM ELISA testing. The model can support surveillance programs and help guide herd-level BLV management decisions over time.
牛白血病病毒(BLV)引起地方性牛白血病,可导致奶牛群的重大经济损失。准确估计群内流行率是有效持续监测和控制的必要步骤。本研究的目的是:(1)利用Bulk Tank Milk (BTM) ELISA抗体滴度建立预测猪群内BLV流行的统计模型;(2)评估该模型在3年内的时间稳定性;(3)探讨奶牛个体平均抗体滴度与BTM结果之间的关系。研究了加拿大沿海地区30个奶牛群的方便样本。采集3年双月BTM标本,测定BTM ELISA抗体滴度。在三年的时间里,每年对导致BTM的奶牛进行个体ELISA检测,从而可以估计出牛群内的真实流行情况。在30个牛群中,1853头牛在第二年检测出blv阳性,1899头牛在第二年检测出blv阳性,760头牛在第三年检测出blv阳性。在第1、2和3年,平均群内患病率分别为42 % (SD 24 %)、31 % (SD 20 %)和29 % (SD 20 %)。建立了7个真实群内流行的单变量线性回归模型,预测因子包括单个BTM结果或接近个体ELISA检测时间的两轮或三轮BTM结果的平均值。以隔2个月采集的2个BTM样本的平均值作为预测牛群患病率的模型,最高R²= 0.91,预测R²= 0.90,被选为最佳模型。模型预测结果与随后数年观察到的群内流行率非常吻合(一致性相关系数0.94-0.98),表明了时间稳定性。奶牛个体平均抗体滴度与BTM抗体水平密切相关(r = 0.95)。本研究提出了一种实用、稳定、具有成本效益的方法,利用BTM ELISA检测来估计和监测猪群中BLV的流行情况。随着时间的推移,该模型可以支持监测项目,并帮助指导畜群级别的BLV管理决策。
{"title":"Stability and validation of a bulk tank milk-based model to estimate within-herd bovine leukemia virus prevalence in dairy herds","authors":"Simon Bourassi ,&nbsp;Emily John ,&nbsp;J.Trenton McClure ,&nbsp;Emilia Bourassi ,&nbsp;Greg Keefe ,&nbsp;Shawn Mckenna ,&nbsp;John VanLeeuwen ,&nbsp;Henrik Stryhn","doi":"10.1016/j.prevetmed.2026.106790","DOIUrl":"10.1016/j.prevetmed.2026.106790","url":null,"abstract":"<div><div>Bovine leukemia virus (BLV) causes enzootic bovine leukosis and can lead to significant economic losses in dairy herds. Accurate estimation of within-herd prevalence is an essential step for effective continuous surveillance and control. The objectives of this study were: (1) to build a statistical model predicting within-herd BLV prevalence using Bulk Tank Milk (BTM) ELISA antibody titers, (2) to assess the temporal stability of this model over three years, and (3) to explore the relationship between mean individual cow antibody titers and BTM results.</div><div>A convenience sample of 30 dairy herds in the Canadian Maritimes was studied. Three years of bi-monthly BTM samples were collected to measure the BTM ELISA antibody titers. Individual ELISA testing of cows contributing to BTM was performed annually for three years, permitting estimation of the true within-herd prevalence. Among the 30 herds, 1453 cows tested BLV-positive in Year 1, 899 in Year 2, and 760 in Year 3. Mean within-herd prevalence were 42 % (SD 24 %), 31 % (SD 20 %), and 29 % (SD 20 %) in Year 1, 2, and 3, respectively.</div><div>Seven univariable linear regression models for true within-herd prevalence were built, with predictors consisting of single BTM results or averages from two or three rounds of BTM results in proximity to the time of individual ELISA testing. The model using the average of two BTM samples collected two months apart as a predictor prevalence in the herd was selected as the best model based on the highest R² = 0.91 and Predictive R² = 0.90. Model predictions showed strong agreement with observed within-herd prevalence in subsequent years (concordance correlation coefficients 0.94–0.98), indicating temporal stability. Mean individual cow antibody titers were strongly correlated with BTM antibody levels (r = 0.95).</div><div>This study presents a practical, stable, and cost-effective approach to estimate and monitor BLV within-herd prevalence using BTM ELISA testing. The model can support surveillance programs and help guide herd-level BLV management decisions over time.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"249 ","pages":"Article 106790"},"PeriodicalIF":2.4,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146119752","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sources of Salmonella infection in pigs in the Netherlands: Epidemiological risk factors and subtyping-based source attribution 荷兰猪中沙门氏菌感染的来源:流行病学危险因素和基于亚型的来源归因
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-04-01 Epub Date: 2026-01-28 DOI: 10.1016/j.prevetmed.2026.106792
Hester Bloem , Indra Bergval , Tryntsje Cuperus , Maren Lanzl , Greetje Castelijn , Ben Wit , Marieke Opsteegh , Lapo Mughini-Gras
Effective Salmonella control in pigs requires understanding how the pathogen is introduced and spreads on farms. This study aimed to identify potential sources of Salmonella infection in pigs using both epidemiological and microbiological methods. A cross-sectional study was conducted on 148 fattening pig farms in the Netherlands. Porcine fecal samples were collected and tested for the presence of Salmonella, and a questionnaire on farm characteristics was completed. Risk factors significantly associated with Salmonella presence at farm-level were identified through logistic regression analysis. For source attribution based on microbial subtyping, serotyped Salmonella isolates obtained from the Dutch national laboratory surveillance system (2016–2023) were used. Pig isolates (n = 494) were attributed to nine putative sources (n = 4171 isolates) using the modified Dutch (mDM) and modified Hald (mHM) models.
A farm-level prevalence of 9.5 % (14/148; 95 % CI 5.3–15.4 %) was found. Cleaning the pens between batches (odds ratio [OR] 0.139, 95 % CI 0.030–0.625) and moving piglets at a later age to the fattening unit (in weeks, OR 0.538, 95 % CI 0.290–0.998) were significantly associated with reduced odds of Salmonella presence, whereas the presence of cattle on the farm increased the odds (OR 4.860, 95 % CI 1.346–17.544). Both mDM and mHM attributed most pig isolates to other pigs (mDM: 43.0 %; mHM: 72.6 %), followed by cattle (mDM: 22.6 %; mHM: 11.0 %) and broilers (mDM: 9.2 %; mHM: 5.0 %), as sources.
This study indicates pig-to-pig transmission as the main source of Salmonella in pigs and suggests that cattle may significantly contribute to Salmonella introduction into pig herds on multi-species farms.
有效控制猪的沙门氏菌需要了解病原体是如何在农场引入和传播的。本研究旨在利用流行病学和微生物学方法确定猪沙门氏菌感染的潜在来源。对荷兰148个育肥猪场进行了横断面研究。收集猪粪便样本,检测是否存在沙门氏菌,并完成农场特征问卷调查。通过logistic回归分析,确定了与沙门氏菌在农场水平存在显著相关的危险因素。对于基于微生物亚型的来源归属,使用了从荷兰国家实验室监测系统(2016-2023)获得的血清型沙门氏菌分离株。猪分离株(n = 494)采用改进的Dutch (mDM)和改进的Hald (mHM)模型归因于9个假定来源(n = 4171株)。农场水平的患病率为9.5 %(14/148;95 % CI 5.3-15.4 %)。清理批次之间的猪圈(比值比[OR] 0.139, 95 % CI 0.030-0.625)和将仔猪移至育猪场(以周为单位,比值比[OR] 0.538, 95 % CI 0.290-0.998)与沙门氏菌存在的几率降低显著相关,而在猪场饲养牛则增加了沙门氏菌存在的几率(比值比[OR] 4.860, 95 % CI 1.346-17.544)。mDM和mHM都将大多数猪分离株归因于其他猪(mDM: 43.0 %;mHM: 72.6 %),其次是牛(mDM: 22.6 %;mHM: 11.0 %)和肉鸡(mDM: 9.2 %;mHM: 5.0 %)。该研究表明,猪与猪之间的传播是猪中沙门氏菌的主要来源,并表明在多物种农场中,牛可能对沙门氏菌传入猪群有重要贡献。
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引用次数: 0
Machine learning for detection of subclinical mastitis: A Bayesian approach incorporating diagnostic test properties 用于检测亚临床乳腺炎的机器学习:结合诊断测试特性的贝叶斯方法。
IF 2.4 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2026-04-01 Epub Date: 2026-02-07 DOI: 10.1016/j.prevetmed.2026.106791
Charlott Olofsson , Aliaksandr Hubin , Hilde Vinje , Amira Rachah , Olav Reksen , Camilla Kielland , Ingrid Toftaker
The large amount of data collected through automatic milking systems (AMS) may be used for early detection of intramammary infections and become instrumental for monitoring udder health in dairy herds. Machine learning (ML) techniques can aid in improving diagnostic test properties of current indicators of subclinical mastitis (SCM). In this study, we present novel customized ML models for predicting SCM from AMS data. We show how results from several diagnostic tests can be incorporated into ML model training by explicitly accounting for their sensitivity and specificity. The underlying infection status was modeled as a latent variable derived from bacteriological culture (BC) and polymerase chain reaction (PCR) results on milk samples. Model performance was evaluated using a customized log-likelihood (CLL) function, addressing uncertainty in prediction target, and compared with traditional metrics using simulated data. Our study demonstrates that incorporating prior knowledge of sensitivity and specificity of the tests directly into the likelihood function during model training enables reliable ML even in scenarios with an imperfect target variable. The customized models achieved the highest CLL scores on real data and demonstrated significantly better calibration on simulated data. At the same time, all models showed similarly near-perfect area under the curve (AUC) on simulated data. Further validation across herds is needed, but our approach shows promise for robust SCM prediction from AMS data using ML. The framework is applicable to other scenarios in veterinary epidemiology with imperfectly measured outcomes.
通过自动挤奶系统(AMS)收集的大量数据可用于早期发现乳腺内感染,并成为监测奶牛群乳房健康的工具。机器学习(ML)技术可以帮助改善亚临床乳腺炎(SCM)当前指标的诊断测试特性。在这项研究中,我们提出了新的定制ML模型,用于从AMS数据预测SCM。我们展示了如何通过明确地考虑其敏感性和特异性,将几个诊断测试的结果纳入ML模型训练。基于细菌培养(BC)和牛奶样品聚合酶链反应(PCR)结果,将潜在感染状态建模为一个潜在变量。使用定制的对数似然(CLL)函数评估模型性能,解决预测目标中的不确定性,并使用模拟数据与传统指标进行比较。我们的研究表明,在模型训练期间,将测试的敏感性和特异性的先验知识直接纳入似然函数中,即使在目标变量不完美的情况下,也可以实现可靠的机器学习。定制模型在真实数据上获得了最高的CLL分数,并在模拟数据上显示出更好的校准效果。同时,所有模型在模拟数据上都显示出近似完美的曲线下面积(AUC)。需要进一步的跨畜群验证,但我们的方法显示了利用ML从AMS数据进行可靠的SCM预测的希望。该框架适用于兽医流行病学中其他不完全测量结果的场景。
{"title":"Machine learning for detection of subclinical mastitis: A Bayesian approach incorporating diagnostic test properties","authors":"Charlott Olofsson ,&nbsp;Aliaksandr Hubin ,&nbsp;Hilde Vinje ,&nbsp;Amira Rachah ,&nbsp;Olav Reksen ,&nbsp;Camilla Kielland ,&nbsp;Ingrid Toftaker","doi":"10.1016/j.prevetmed.2026.106791","DOIUrl":"10.1016/j.prevetmed.2026.106791","url":null,"abstract":"<div><div>The large amount of data collected through automatic milking systems (AMS) may be used for early detection of intramammary infections and become instrumental for monitoring udder health in dairy herds. Machine learning (ML) techniques can aid in improving diagnostic test properties of current indicators of subclinical mastitis (SCM). In this study, we present novel customized ML models for predicting SCM from AMS data. We show how results from several diagnostic tests can be incorporated into ML model training by explicitly accounting for their sensitivity and specificity. The underlying infection status was modeled as a latent variable derived from bacteriological culture (BC) and polymerase chain reaction (PCR) results on milk samples. Model performance was evaluated using a customized log-likelihood (CLL) function, addressing uncertainty in prediction target, and compared with traditional metrics using simulated data. Our study demonstrates that incorporating prior knowledge of sensitivity and specificity of the tests directly into the likelihood function during model training enables reliable ML even in scenarios with an imperfect target variable. The customized models achieved the highest CLL scores on real data and demonstrated significantly better calibration on simulated data. At the same time, all models showed similarly near-perfect area under the curve (AUC) on simulated data. Further validation across herds is needed, but our approach shows promise for robust SCM prediction from AMS data using ML. The framework is applicable to other scenarios in veterinary epidemiology with imperfectly measured outcomes.</div></div>","PeriodicalId":20413,"journal":{"name":"Preventive veterinary medicine","volume":"249 ","pages":"Article 106791"},"PeriodicalIF":2.4,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146157986","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Preventive veterinary medicine
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