首页 > 最新文献

Poultry Science最新文献

英文 中文
Application of culturomics to explore the cultivable microbiota and enable targeted bacterial isolation from the ceca of broiler chickens 应用培养组学技术探索肉鸡盲肠可培养菌群,实现对盲肠细菌的靶向分离
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-28 DOI: 10.1016/j.psj.2026.106527
Manhong Wang , Xin Ye , Chuan-Yu Hsu , Hailey Fugate , Xue Zhang , Pratima Acharya Adhikari , Peixin Fan , Katie Elliott , Ken Macklin , Li Zhang
Metagenomic analyses have significantly advanced our understanding of microbial composition in the poultry gut. However, many microbes identified through metagenomic studies remain uncultured, largely due to the lack of understanding of their cultivation conditions, which hinders efforts to explore their functional roles in gut health and metabolism. In this study, we performed culturomics, a culture-dependent approach that combines diverse culture conditions with high-throughput 16S rRNA gene sequencing, to comprehensively assess the cultivability of chicken cecal microbiota and provide guidance for isolating target species of interest. Microbial profiling was performed using both culture-dependent (CD) and culture-independent (CI) approaches. For CI, genomic DNA (gDNA) was directly extracted from six broiler chicken cecal samples and subjected to full-length 16S rRNA gene sequencing. For CD, the same samples were cultured under 28 conditions, yielding 161 colony mixtures for sequencing. Based on diversity profiles of the colony mixtures, 10 conditions were selected for single-colony isolation and analysis. Results showed that CD and CI approaches identified 350 and 502 bacterial species, respectively, with 160 species detected by both methods. The dominant species recovered by the CD approach,including Escherichia coli, Proteus mirabilis, Limosilactobacillus reuteri, Enterococcus faecalis, and Ligilactobacillus salivarius, were detected at much lower abundances in the CI analysis, highlighting the capacity of culturomics to enrich and recover minority taxa that are often poorly detected by CI apparoach. Cultivation profiling showed that MRS selectively enriched Limosilactobacillus and Ligilactobacillus as well as Lactobacillus, whereas CNAB and MSA enriched Enterococcus and Bacillus, respectively. Community diversity and structure were significantly influenced by culture conditions (P < 0.01), with medium as the primary factor and air condition as a secondary factor. Subsequent single-colony analysis from 10 selected culture conditions identified 150 single-species isolates belonging to 14 distinct bacterial species. This study provides foundational insight into the cultivability of chicken cecal microbiota, facilitating future research to isolate specific strains and characterize their roles in poultry health and nutrition.
宏基因组分析大大提高了我们对家禽肠道微生物组成的理解。然而,许多通过宏基因组学研究鉴定的微生物仍然未被培养,这主要是由于缺乏对其培养条件的了解,这阻碍了探索其在肠道健康和代谢中的功能作用。在本研究中,我们采用了培养组学,一种将不同培养条件与高通量16S rRNA基因测序相结合的培养依赖方法,全面评估鸡盲肠微生物群的可培养性,并为分离感兴趣的目标物种提供指导。使用培养依赖性(CD)和培养非依赖性(CI)方法进行微生物谱分析。CI方法是直接从6只肉鸡盲肠样本中提取基因组DNA (gDNA),并进行16S rRNA全长基因测序。对于CD,同样的样品在28种条件下培养,得到161个菌落混合物用于测序。根据菌落混合物的多样性特征,选择10个条件进行单菌落分离和分析。结果表明,CD法和CI法分别鉴定出350种和502种细菌,两种方法共鉴定出160种细菌。通过CD方法恢复的优势物种,包括大肠杆菌、奇异变形杆菌、罗伊氏乳酸杆菌、粪肠球菌和唾液脂乳杆菌,在CI分析中被检测到的丰度要低得多,这突出了培养组学丰富和恢复少数类群的能力,而这些类群通常在CI方法中检测不到。培养分析表明,MRS选择性富集Limosilactobacillus和liilactobacillus以及Lactobacillus,而CNAB和MSA分别富集Enterococcus和Bacillus。培养条件对群落多样性和结构有显著影响(P < 0.01),培养基是主要因素,空气条件是次要因素。随后从10个选定的培养条件中进行单菌落分析,鉴定出150个单菌种分离物,属于14种不同的细菌。本研究为深入了解鸡盲肠菌群的可培养性提供了基础,为进一步研究分离特定菌株和表征其在家禽健康和营养中的作用提供了基础。
{"title":"Application of culturomics to explore the cultivable microbiota and enable targeted bacterial isolation from the ceca of broiler chickens","authors":"Manhong Wang ,&nbsp;Xin Ye ,&nbsp;Chuan-Yu Hsu ,&nbsp;Hailey Fugate ,&nbsp;Xue Zhang ,&nbsp;Pratima Acharya Adhikari ,&nbsp;Peixin Fan ,&nbsp;Katie Elliott ,&nbsp;Ken Macklin ,&nbsp;Li Zhang","doi":"10.1016/j.psj.2026.106527","DOIUrl":"10.1016/j.psj.2026.106527","url":null,"abstract":"<div><div>Metagenomic analyses have significantly advanced our understanding of microbial composition in the poultry gut. However, many microbes identified through metagenomic studies remain uncultured, largely due to the lack of understanding of their cultivation conditions, which hinders efforts to explore their functional roles in gut health and metabolism. In this study, we performed culturomics, a culture-dependent approach that combines diverse culture conditions with high-throughput <em>16S rRNA</em> gene sequencing, to comprehensively assess the cultivability of chicken cecal microbiota and provide guidance for isolating target species of interest. Microbial profiling was performed using both culture-dependent (<strong>CD</strong>) and culture-independent (<strong>CI</strong>) approaches. For CI, genomic DNA (<strong>gDNA</strong>) was directly extracted from six broiler chicken cecal samples and subjected to full-length <em>16S rRNA</em> gene sequencing. For CD, the same samples were cultured under 28 conditions, yielding 161 colony mixtures for sequencing. Based on diversity profiles of the colony mixtures, 10 conditions were selected for single-colony isolation and analysis. Results showed that CD and CI approaches identified 350 and 502 bacterial species, respectively, with 160 species detected by both methods. The dominant species recovered by the CD approach,including <em>Escherichia coli, Proteus mirabilis, Limosilactobacillus reuteri, Enterococcus faecalis</em>, and <em>Ligilactobacillus salivarius</em>, were detected at much lower abundances in the CI analysis, highlighting the capacity of culturomics to enrich and recover minority taxa that are often poorly detected by CI apparoach. Cultivation profiling showed that MRS selectively enriched <em>Limosilactobacillus</em> and <em>Ligilactobacillus</em> as well as <em>Lactobacillus</em>, whereas CNAB and MSA enriched <em>Enterococcus</em> and <em>Bacillus</em>, respectively. Community diversity and structure were significantly influenced by culture conditions (<em>P</em> &lt; 0.01), with medium as the primary factor and air condition as a secondary factor. Subsequent single-colony analysis from 10 selected culture conditions identified 150 single-species isolates belonging to 14 distinct bacterial species. This study provides foundational insight into the cultivability of chicken cecal microbiota, facilitating future research to isolate specific strains and characterize their roles in poultry health and nutrition.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106527"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146080500","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Research note: Identification of SNP-based haplotypes for the A, D, E, I, and L alloantigen systems in the chicken reference genome line UCD-001 研究说明:鸡参考基因组系UCD-001中A、D、E、I和L异体抗原系统的单倍型鉴定
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-28 DOI: 10.1016/j.psj.2026.106545
Robert L. Taylor Jr. , Amy M. McCarron , Janet E. Fulton
Allelic variation in chicken red blood cell alloantigens has multiple associations with production traits or disease resistance. Recent studies have identified the gene and chromosomal location for chicken alloantigen genes A, D, E, I, and L. Haplotypes (specific SNP combinations) within each gene were identified to distinguish the serological variants found within the different blood systems. The objective of this study was to characterize alloantigen alleles in Line UCD-001, an inbred line of Jungle fowl, which is the original reference sequence for the chicken genome. The B blood group, the chicken MHC, was the only alloantigen system having known serological and SNP types, with UCD-001 typing as serological BQ and DNA-based BSNP-A09A. Genome sequence and DNA samples from the original UCD-001 reference bird, plus an additional 10 UCD-001 birds, were used to identify five additional alloantigen system alleles within UCD-001. The alloantigen genes and their SNP types for the A and the linked E systems are complement component 4 binding protein, membrane, C4BPM-H12, and Fc fragment of IgA and IgM receptor, FCAMR-H01, respectively. Neither of these SNP types corresponded to alleles previously characterized by serology. Alloantigen D was identified as CD99 whose SNP haplotype, CD99-H06, corresponded to the D3 serological allele. The I system, equivalent to the human RHCE blood group locus, was heterozygous in the reference population. Both RHCE-H01, the I8 serological allele, and RHCE-H06, previously unidentified by serology, were present in UCD-001. The ABCE1 gene, ATP-binding cassette subfamily E member 1, is alloantigen L with UCD-001 containing the ABCE1-H01 haplotype consistent with the L1 serological allele. Identifying the alloantigen genotypes of this important inbred line will facilitate studies of alloantigen effects through line crosses to produce progeny segregating for alloantigen alleles or through comparisons with other stocks.
鸡红细胞同种异体抗原的等位基因变异与生产性状或抗病性有多重关联。最近的研究已经确定了鸡异体抗原基因A、D、E、I和l的基因和染色体位置,确定了每个基因中的单倍型(特定SNP组合),以区分在不同血液系统中发现的血清学变异。本研究的目的是对作为鸡基因组原始参考序列的丛林鸡自交系UCD-001的同种异体抗原等位基因进行鉴定。B血型,即鸡MHC,是唯一已知血清学和SNP分型的同种异体抗原系统,其中UCD-001分型为血清学BQ和基于dna的BSNP-A09A。利用原始UCD-001参考鸟和另外10只UCD-001参考鸟的基因组序列和DNA样本,确定了UCD-001中另外5个同种异体抗原系统等位基因。A和连接的E系统的同种异体抗原基因及其SNP类型分别为IgA和IgM受体的补体组分4结合蛋白、膜、c4bmp - h12和Fc片段FCAMR-H01。这些SNP类型都不对应于先前血清学表征的等位基因。同种异体抗原D鉴定为CD99,其SNP单倍型CD99- h06与D3血清学等位基因对应。I系统相当于人类RHCE血型位点,在参考人群中是杂合的。RHCE-H01、I8血清学等位基因和RHCE-H06均存在于UCD-001中,此前未被血清学鉴定。ABCE1基因,atp结合盒亚家族E成员1,是UCD-001的同种异体抗原L,含有与L1血清学等位基因一致的ABCE1- h01单倍型。确定这一重要自交系的同种异体抗原基因型,将有助于通过杂交产生同种异体抗原等位基因的后代分离或通过与其他种群的比较来研究同种异体抗原的作用。
{"title":"Research note: Identification of SNP-based haplotypes for the A, D, E, I, and L alloantigen systems in the chicken reference genome line UCD-001","authors":"Robert L. Taylor Jr. ,&nbsp;Amy M. McCarron ,&nbsp;Janet E. Fulton","doi":"10.1016/j.psj.2026.106545","DOIUrl":"10.1016/j.psj.2026.106545","url":null,"abstract":"<div><div>Allelic variation in chicken red blood cell alloantigens has multiple associations with production traits or disease resistance. Recent studies have identified the gene and chromosomal location for chicken alloantigen genes A, D, E, I, and L. Haplotypes (specific SNP combinations) within each gene were identified to distinguish the serological variants found within the different blood systems. The objective of this study was to characterize alloantigen alleles in Line UCD-001, an inbred line of Jungle fowl, which is the original reference sequence for the chicken genome. The B blood group, the chicken MHC, was the only alloantigen system having known serological and SNP types, with UCD-001 typing as serological B<sup>Q</sup> and DNA-based BSNP-A09A. Genome sequence and DNA samples from the original UCD-001 reference bird, plus an additional 10 UCD-001 birds, were used to identify five additional alloantigen system alleles within UCD-001. The alloantigen genes and their SNP types for the A and the linked E systems are complement component 4 binding protein, membrane, C4BPM-H12, and Fc fragment of IgA and IgM receptor, FCAMR-H01, respectively. Neither of these SNP types corresponded to alleles previously characterized by serology. Alloantigen D was identified as CD99 whose SNP haplotype, CD99-H06, corresponded to the D<sup>3</sup> serological allele. The I system, equivalent to the human RHCE blood group locus, was heterozygous in the reference population. Both RHCE-H01, the I<sup>8</sup> serological allele, and RHCE-H06, previously unidentified by serology, were present in UCD-001. The ABCE1 gene, ATP-binding cassette subfamily E member 1, is alloantigen L with UCD-001 containing the ABCE1-H01 haplotype consistent with the L<sup>1</sup> serological allele. Identifying the alloantigen genotypes of this important inbred line will facilitate studies of alloantigen effects through line crosses to produce progeny segregating for alloantigen alleles or through comparisons with other stocks.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106545"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146170570","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dietary fucoidan supplementation ameliorates heat stress-induced liver injury in broilers via modulating peroxidation, lipid metabolism, and ferroptosis 饲粮中添加岩藻糖聚糖可通过调节过氧化、脂质代谢和铁下垂改善热应激诱导的肉仔鸡肝损伤。
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-20 DOI: 10.1016/j.psj.2026.106489
Qi-Hao Liang, Qian-Qian Liu, Shan-Zi Tian, Qing-Hua Yao, Xue-Qing Ye, Wen-Chao Liu
Heat stress (HS) is a significant challenge in broilers, which has a negative impact on liver health and metabolic function, endangering broiler production. This study aimed to evaluate the protective effects of dietary fucoidan (FUC) in mitigating HS-induced liver injury and to elucidate the underlying mechanisms. A total of 240 male Arbor Acres (AA) broilers at 21 days of age were randomly divided into five groups: thermoneutral (TN) group, HS group, and HS group supplemented with 200, 400, or 800 mg/kg FUC, respectively. Based on comprehensive assessments of liver histopathology, liver index, and serum biochemical markers-related to liver function (TP, ALB, AST, ALT), 800 mg/kg FUC was identified as the effective dose for alleviating HS-induced hepatic injury, resulting in improvements in liver architecture and function. Further investigations revealed that 800 mg/kg FUC enhanced hepatic antioxidant capacity by increasing T-AOC, T-SOD, and GSH-Px activities in broilers under HS. The non-targeted metabolomics analysis suggested that FUC improves six metabolites in the liver of broilers subjected to HS, including Glu-Asp-Gln, Asn-Pro-Tyr, Glu-Thr-Ile, N-Acetylleucylalanylserine, Octadecyl Fumarate, and Oleoyl-l-Carnitine. The differential metabolites were significantly enriched in several metabolic pathways, such as glycerophospholipid metabolism, fatty acid degradation, and ferroptosis. Furthermore, dietary FUC enhanced the expression of antioxidant genes (GCLC, GCLM, HO-1, SOD2, GPX1, GPX3, CAT1, and GSTA3), suppressed lipogenic genes (SREBP-1, FAS, and ACC), and upregulated the lipolytic gene ATGL as well as the adipogenic regulator PPARγ in the liver of broilers under HS. Additionally, FUC downregulated pro-ferroptotic genes (ACSL4, LPCAT3, and PTGS2) while upregulated anti-ferroptotic genes (Fpn1, FTH1 and SLC7A11) in the liver of heat-stressed broilers. Western blot analysis confirmed that FUC activated the Nrf2 signaling pathway by increasing the protein expression of Nrf2, phosphorylated Nrf2 (p-Nrf2), and nuclear p-Nrf2, while upregulated the AMPK pathway by increasing AMPK and phosphorylated AMPK (p-AMPK) protein levels of the liver in broilers subjected to HS. These findings indicate that dietary supplementation with 800 mg/kg FUC ameliorates HS-induced liver injury through the activation of Nrf2-mediated antioxidant and anti-ferroptosis signaling, and the regulation of AMPK-mediated lipid metabolism balance. This study provides a dietary strategy to improve liver health in heat-stressed broilers, which is beneficial for broiler production during the hot season.
热应激(HS)是肉鸡面临的一个重大挑战,对肉鸡肝脏健康和代谢功能产生负面影响,危及肉鸡生产。本研究旨在评价膳食岩藻糖聚糖(FUC)减轻hs诱导的肝损伤的保护作用,并阐明其机制。选取240只21日龄爱拔益加(AA)肉鸡,随机分为5组:热中性(TN)组、HS组和HS组,分别添加200、400和800 mg/kg FUC。综合评估肝脏组织病理学、肝脏指数及肝功能相关血清生化指标(TP、ALB、AST、ALT),确定800 mg/kg FUC为减轻hs所致肝损伤的有效剂量,可改善肝脏结构和功能。进一步研究表明,800 mg/kg FUC通过提高HS下肉仔鸡的T-AOC、T-SOD和GSH-Px活性来增强肝脏抗氧化能力。非靶向代谢组学分析表明,FUC可改善HS处理肉鸡肝脏中的6种代谢物,包括Glu-Asp-Gln、Asn-Pro-Tyr、Glu-Thr-Ile、n-乙酰亮氨酸丙酰丝氨酸、富马酸十八烷基和油酰肉毒碱。在甘油磷脂代谢、脂肪酸降解和铁下垂等代谢途径中,差异代谢物显著富集。此外,饲粮FUC提高了HS下肉仔鸡肝脏中抗氧化基因(GCLC、GCLM、HO-1、SOD2、GPX1、GPX3、CAT1和GSTA3)的表达,抑制了脂肪生成基因(SREBP-1、FAS和ACC)的表达,上调了脂肪分解基因ATGL和脂肪生成调节因子PPARγ的表达。此外,FUC还下调了热应激肉鸡肝脏中亲铁沉基因(ACSL4、LPCAT3和PTGS2),上调了抗铁沉基因(Fpn1、FTH1和SLC7A11)。Western blot分析证实,FUC通过增加HS肉鸡肝脏中Nrf2、磷酸化Nrf2 (p-Nrf2)和核磷酸化p-Nrf2的蛋白表达激活Nrf2信号通路,同时通过增加AMPK和磷酸化AMPK (p-AMPK)蛋白水平上调AMPK通路。综上所述,饲粮中添加800 mg/kg FUC可通过激活nrf2介导的抗氧化和抗铁凋亡信号,以及调节ampk介导的脂质代谢平衡,改善hs诱导的肝损伤。本研究提供了一种改善热应激肉鸡肝脏健康的饲粮策略,有利于炎热季节肉鸡生产。
{"title":"Dietary fucoidan supplementation ameliorates heat stress-induced liver injury in broilers via modulating peroxidation, lipid metabolism, and ferroptosis","authors":"Qi-Hao Liang,&nbsp;Qian-Qian Liu,&nbsp;Shan-Zi Tian,&nbsp;Qing-Hua Yao,&nbsp;Xue-Qing Ye,&nbsp;Wen-Chao Liu","doi":"10.1016/j.psj.2026.106489","DOIUrl":"10.1016/j.psj.2026.106489","url":null,"abstract":"<div><div>Heat stress (<strong>HS</strong>) is a significant challenge in broilers, which has a negative impact on liver health and metabolic function, endangering broiler production. This study aimed to evaluate the protective effects of dietary fucoidan (<strong>FUC</strong>) in mitigating HS-induced liver injury and to elucidate the underlying mechanisms. A total of 240 male Arbor Acres (<strong>AA</strong>) broilers at 21 days of age were randomly divided into five groups: thermoneutral (<strong>TN</strong>) group, HS group, and HS group supplemented with 200, 400, or 800 mg/kg FUC, respectively. Based on comprehensive assessments of liver histopathology, liver index, and serum biochemical markers-related to liver function (TP, ALB, AST, ALT), 800 mg/kg FUC was identified as the effective dose for alleviating HS-induced hepatic injury, resulting in improvements in liver architecture and function. Further investigations revealed that 800 mg/kg FUC enhanced hepatic antioxidant capacity by increasing T-AOC, T-SOD, and GSH-Px activities in broilers under HS. The non-targeted metabolomics analysis suggested that FUC improves six metabolites in the liver of broilers subjected to HS, including Glu-Asp-Gln, Asn-Pro-Tyr, Glu-Thr-Ile, N-Acetylleucylalanylserine, Octadecyl Fumarate, and Oleoyl-<span>l</span>-Carnitine. The differential metabolites were significantly enriched in several metabolic pathways, such as glycerophospholipid metabolism, fatty acid degradation, and ferroptosis. Furthermore, dietary FUC enhanced the expression of antioxidant genes (<em>GCLC, GCLM, HO-1, SOD2, GPX1, GPX3, CAT1</em>, and <em>GSTA3</em>), suppressed lipogenic genes (<em>SREBP-1, FAS</em>, and <em>ACC</em>), and upregulated the lipolytic gene <em>ATGL</em> as well as the adipogenic regulator <em>PPARγ</em> in the liver of broilers under HS. Additionally, FUC downregulated pro-ferroptotic genes (<em>ACSL4, LPCAT3</em>, and <em>PTGS2</em>) while upregulated anti-ferroptotic genes (<em>Fpn1, FTH1</em> and <em>SLC7A11</em>) in the liver of heat-stressed broilers. Western blot analysis confirmed that FUC activated the Nrf2 signaling pathway by increasing the protein expression of Nrf2, phosphorylated Nrf2 (<strong>p-Nrf2</strong>), and nuclear p-Nrf2, while upregulated the AMPK pathway by increasing AMPK and phosphorylated AMPK (<strong>p-AMPK</strong>) protein levels of the liver in broilers subjected to HS. These findings indicate that dietary supplementation with 800 mg/kg FUC ameliorates HS-induced liver injury through the activation of Nrf2-mediated antioxidant and anti-ferroptosis signaling, and the regulation of AMPK-mediated lipid metabolism balance. This study provides a dietary strategy to improve liver health in heat-stressed broilers, which is beneficial for broiler production during the hot season.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106489"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146053516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep learning can automate chicken tibia-breaking strength quantification to improve animal welfare 深度学习可以自动化鸡胫骨断裂强度量化,提高动物福利。
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-30 DOI: 10.1016/j.psj.2026.106549
Tanmay Debnath , Peter Wilson , Ricardo Pong-Wong , Lindsey Plenderleith , Björn Andersson , Matthias Schmutz , Ian Dunn , James G.D. Prendergast
Bone damage is an important welfare issue in the poultry industry, yet large-scale phenotyping of chicken bone strength currently relies on time-consuming manual annotation of X-rays or destructive post-mortem testing. To address this, an end-to-end deep-learning pipeline was developed that automatically (i) segments the chicken tibiotarsus from lateral X-ray images (U-Net, Dice = 0.91) and (ii) predicts its breaking strength from pixel intensities alone. Using 916 curated bone images, the predictor achieved moderately high correlation with measured breaking strength (maximum Pearson’s correlation of 0.74), exceeding the performance of a previous labour-intensive manual annotation method. Image-derived predictions were moderately heritable (h² ≈ 0.16) and exhibited an exceptionally high genetic correlation with the physical trait, indicating that selection on the model-derived phenotype is a good proxy to select for bone strength. The workflow therefore provides a potential rapid, non-invasive and genetically informative alternative to post-mortem testing, paving the way for the routine incorporation of bone-quality traits into commercial breeding programmes and improved poultry welfare at scale.
骨损伤是家禽业的一个重要福利问题,然而鸡骨强度的大规模表型分析目前依赖于耗时的人工x射线注释或破坏性的死后检测。为了解决这个问题,开发了端到端深度学习管道,自动(i)从侧面x射线图像中分割鸡胫跗骨(U-Net, Dice = 0.91), (ii)仅从像素强度预测其断裂强度。使用916张整理的骨骼图像,预测器与测量的断裂强度实现了适度的高相关性(最大Pearson相关性为0.74),超过了以前劳动密集型手动注释方法的性能。图像衍生的预测具有中等可遗传性(h²≈0.16),并且与物理性状表现出异常高的遗传相关性,表明模型衍生表型的选择是选择骨强度的良好代理。因此,该工作流程为宰后检测提供了一种潜在的快速、非侵入性和遗传信息丰富的替代方法,为将骨质量性状常规纳入商业育种计划和大规模改善家禽福利铺平了道路。
{"title":"Deep learning can automate chicken tibia-breaking strength quantification to improve animal welfare","authors":"Tanmay Debnath ,&nbsp;Peter Wilson ,&nbsp;Ricardo Pong-Wong ,&nbsp;Lindsey Plenderleith ,&nbsp;Björn Andersson ,&nbsp;Matthias Schmutz ,&nbsp;Ian Dunn ,&nbsp;James G.D. Prendergast","doi":"10.1016/j.psj.2026.106549","DOIUrl":"10.1016/j.psj.2026.106549","url":null,"abstract":"<div><div>Bone damage is an important welfare issue in the poultry industry, yet large-scale phenotyping of chicken bone strength currently relies on time-consuming manual annotation of X-rays or destructive post-mortem testing. To address this, an end-to-end deep-learning pipeline was developed that automatically (i) segments the chicken tibiotarsus from lateral X-ray images (U-Net, Dice = 0.91) and (ii) predicts its breaking strength from pixel intensities alone. Using 916 curated bone images, the predictor achieved moderately high correlation with measured breaking strength (maximum Pearson’s correlation of 0.74), exceeding the performance of a previous labour-intensive manual annotation method. Image-derived predictions were moderately heritable (h² ≈ 0.16) and exhibited an exceptionally high genetic correlation with the physical trait, indicating that selection on the model-derived phenotype is a good proxy to select for bone strength. The workflow therefore provides a potential rapid, non-invasive and genetically informative alternative to post-mortem testing, paving the way for the routine incorporation of bone-quality traits into commercial breeding programmes and improved poultry welfare at scale.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106549"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146119772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Soybean genotype amino acid selection and processing method effects on broiler performance 大豆基因型氨基酸选择及加工方式对肉鸡生产性能的影响。
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-24 DOI: 10.1016/j.psj.2026.106514
S.C. Wells , K.B. Nelson , M.F. Costa , B.L. Angel , V.G. Slick , B.W. Parsons , A. Acuna-Galindo , M.T. Kidd
This study consisted of two experiments to assess soybean meal (SBM) with improved traits fed to Cobb 500 male broilers. In Experiment 1, 3 dietary treatments replicated 10 times (540 broilers) varying in SBM source were tested (0 to 45 d-of-age): conventional soybeans processed using solvent extraction (ConvSE), conventional soybeans processed using extrusion and expeller pressing (ConvEE), and an experimental line of soybeans selected for increased amino acid composition (i.e., less limiting amino acids) processed using extrusion and expeller pressing (ExpEE). In Experiment 2, the ConvEE and ExpEE dietary treatments were replicated 10 times and fed to chicks (240 broilers) from d 0 to 13. In Experiment 1, the treatment design allowed for all treatments being equal in the first five limiting amino acids (i. e., varying levels of SBM) and iso-caloric, and in Experiment 2 the treatment design represented direct substitution of soybean meal source. In Experiment 1, 45-d broiler performance and processed yields (i.e., BW gain, feed intake, feed:gain, intestinal tight junction integrity, and processed yields and myopathies) did not differ among dietary treatments (P > 0.05). In Experiment 2, 13-d chick BW gain, feed intake, and feed:gain were not affected by dietary treatments. However, the ExpEE compared to the ConvEE contained higher (P ≤ 0.05) digestible amounts of Lys, Thr, Ser, Val, Ile, Leu, Arg, Trp, Phe, and Tyr. In conclusion, although ExpEE diets contained 1.30-1.80 % less SBM than the other treatments, broilers fed ExpEE treatments exhibited similar performance to broilers fed higher inclusions of SBM, which can be explained by ExpEE having soybeans selected for increased amino acid composition that were found to be more digestible in Thr, Ser, Val, Iso, Leu, Tyr, Phe, Lys, Arg, and Trp (P<0.05).
本试验分为两个试验,对Cobb 500肉鸡饲粮中改良豆粕进行了评价。在试验1中,试验了3种不同SBM来源的饲粮处理(540只)(0 ~ 45日龄),重复10次:采用溶剂萃取法(ConvSE)加工的传统大豆,采用挤压挤压法(conve)加工的传统大豆,以及采用挤压挤压法(ExpEE)加工的氨基酸组成增加(即限制性氨基酸减少)的大豆试验品系。试验2,在0 ~ 13日龄饲喂240只肉鸡,重复10次conve和ExpEE饲粮处理。在试验1中,处理设计允许所有处理在前五个限制性氨基酸(即不同水平的SBM)和等热量方面相同,在试验2中,处理设计代表直接替代豆粕源。试验1中,45日龄肉鸡生产性能和加工产量(即体重增重、采食量、料重比、肠道紧密结完整性、加工产量和肌病)在饲粮处理中无显著差异(P < 0.05)。试验2中,饲粮处理对13日龄雏鸡体重增重、采食量和料重比均无影响。但与conve相比,ExpEE的赖氨酸、苏氨酸、丝氨酸、缬氨酸、赖氨酸、亮氨酸、精氨酸、色氨酸、苯丙氨酸和酪氨酸的可消化量更高(P≤0.05)。综上所述,尽管ExpEE饲粮的粗脂肪含量比其他处理低1.30- 1.80%,但饲喂ExpEE饲粮的肉鸡表现出与饲喂高粗脂肪饲粮的肉鸡相似的生产性能,这可以解释为ExpEE饲粮中选择的大豆增加了氨基酸组成,在苏氨酸、丝氨酸、缬氨酸、异亮氨酸、亮氨酸、酪氨酸、亮氨酸、赖氨酸、精氨酸和色氨酸(P)中被发现更容易消化
{"title":"Soybean genotype amino acid selection and processing method effects on broiler performance","authors":"S.C. Wells ,&nbsp;K.B. Nelson ,&nbsp;M.F. Costa ,&nbsp;B.L. Angel ,&nbsp;V.G. Slick ,&nbsp;B.W. Parsons ,&nbsp;A. Acuna-Galindo ,&nbsp;M.T. Kidd","doi":"10.1016/j.psj.2026.106514","DOIUrl":"10.1016/j.psj.2026.106514","url":null,"abstract":"<div><div>This study consisted of two experiments to assess soybean meal (<strong>SBM</strong>) with improved traits fed to Cobb 500 male broilers. In Experiment 1, 3 dietary treatments replicated 10 times (540 broilers) varying in SBM source were tested (0 to 45 d-of-age): conventional soybeans processed using solvent extraction (<strong>ConvSE</strong>), conventional soybeans processed using extrusion and expeller pressing (<strong>ConvEE</strong>), and an experimental line of soybeans selected for increased amino acid composition (i.e., less limiting amino acids) processed using extrusion and expeller pressing (<strong>ExpEE</strong>). In Experiment 2, the ConvEE and ExpEE dietary treatments were replicated 10 times and fed to chicks (240 broilers) from d 0 to 13. In Experiment 1, the treatment design allowed for all treatments being equal in the first five limiting amino acids (i. e., varying levels of SBM) and iso-caloric, and in Experiment 2 the treatment design represented direct substitution of soybean meal source. In Experiment 1, 45-d broiler performance and processed yields (i.e., BW gain, feed intake, feed:gain, intestinal tight junction integrity, and processed yields and myopathies) did not differ among dietary treatments (<em>P</em> &gt; 0.05). In Experiment 2, 13-d chick BW gain, feed intake, and feed:gain were not affected by dietary treatments. However, the ExpEE compared to the ConvEE contained higher (<em>P</em> ≤ 0.05) digestible amounts of Lys, Thr, Ser, Val, Ile, Leu, Arg, Trp, Phe, and Tyr. In conclusion, although ExpEE diets contained 1.30-1.80 % less SBM than the other treatments, broilers fed ExpEE treatments exhibited similar performance to broilers fed higher inclusions of SBM, which can be explained by ExpEE having soybeans selected for increased amino acid composition that were found to be more digestible in Thr, Ser, Val, Iso, Leu, Tyr, Phe, Lys, Arg, and Trp (P&lt;0.05).</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106514"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146132809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
miRNA profiling reveals that gga-let-7i/COL1A2 axis induces cell cycle arrest and triggers cellular senescence to accelerate ovarian aging in laying hens by suppressing the PI3K/AKT/MDM2 pathway miRNA分析表明,gga-let-7i/COL1A2轴通过抑制PI3K/AKT/MDM2通路诱导细胞周期阻滞,触发细胞衰老,从而加速蛋鸡卵巢衰老。
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-28 DOI: 10.1016/j.psj.2026.106542
Yuanhang Wei , Chimei Liao , Yixuan Wang , Can Cui , Yao Zhang , Zhuanjian Li , Congjiao Sun , Qing Zhu , Huadong Yin , Shunshun Han
Reproductive senescence in laying hens, characterized by a progressive decline in egg production, represents a major challenge for the poultry industry. Although microRNAs (miRNAs) are recognized as important regulators of aging, their specific roles and mechanisms in ovarian aging of hens remain largely unclear. This study was designed to comprehensively analyze miRNA expression patterns during ovarian aging in laying hens. The objectives of this study were to identify key functional miRNAs and to elucidate their molecular regulatory mechanisms. Specifically, this study evaluated ovarian senescence in hens at 350, 500 and 700 days of age, observing a decline in egg production, increased follicular atresia, and p53 upregulation. miRNA sequencing analysis identified 44 differentially expressed miRNAs (DEMs), among which gga-let-7i exhibited the highest abundance and showed progressive upregulation during aging. Functional assays revealed that gga-let-7i induces cell cycle arrest and promotes cellular senescence in ovarian follicle granulosa cells (GCs). Mechanistically, collagen type I alpha 2 chain (COL1A2) was confirmed as a direct target of gga-let-7i, and it has been demonstrated that gga-let-7i accelerates senescence by inhibiting the COL1A2/PI3K/AKT/MDM2 pathway, resulting in p53 accumulation and the downstream cellular senescence signaling pathways activation. These results uncover a novel gga-let-7i/COL1A2 regulatory axis involved in ovarian aging and suggest potential targets for extending reproductive longevity in laying hens.
蛋鸡的生殖衰老,其特点是产蛋量逐渐下降,是家禽业面临的主要挑战。尽管microRNAs (miRNAs)被认为是衰老的重要调节因子,但它们在母鸡卵巢衰老中的具体作用和机制仍不清楚。本研究旨在全面分析蛋鸡卵巢衰老过程中miRNA的表达模式。本研究的目的是鉴定关键功能mirna并阐明其分子调控机制。具体来说,本研究评估了母鸡在350、500和700日龄时的卵巢衰老,观察到产蛋量下降、卵泡闭锁增加和p53上调。miRNA测序分析鉴定出44个差异表达miRNA (DEMs),其中gga-let-7i丰度最高,并在衰老过程中逐渐上调。功能分析显示,gga-let-7i诱导卵泡颗粒细胞(GCs)细胞周期阻滞,促进细胞衰老。机制上,ⅰ型胶原α 2链(COL1A2)被证实是gga-let-7i的直接靶点,gga-let-7i通过抑制COL1A2/PI3K/AKT/MDM2通路加速衰老,导致p53积累,激活下游细胞衰老信号通路。这些结果揭示了一个新的gga-let-7i/COL1A2调节轴参与卵巢衰老,并提出了延长蛋鸡生殖寿命的潜在靶点。
{"title":"miRNA profiling reveals that gga-let-7i/COL1A2 axis induces cell cycle arrest and triggers cellular senescence to accelerate ovarian aging in laying hens by suppressing the PI3K/AKT/MDM2 pathway","authors":"Yuanhang Wei ,&nbsp;Chimei Liao ,&nbsp;Yixuan Wang ,&nbsp;Can Cui ,&nbsp;Yao Zhang ,&nbsp;Zhuanjian Li ,&nbsp;Congjiao Sun ,&nbsp;Qing Zhu ,&nbsp;Huadong Yin ,&nbsp;Shunshun Han","doi":"10.1016/j.psj.2026.106542","DOIUrl":"10.1016/j.psj.2026.106542","url":null,"abstract":"<div><div>Reproductive senescence in laying hens, characterized by a progressive decline in egg production, represents a major challenge for the poultry industry. Although microRNAs (<strong>miRNAs</strong>) are recognized as important regulators of aging, their specific roles and mechanisms in ovarian aging of hens remain largely unclear. This study was designed to comprehensively analyze miRNA expression patterns during ovarian aging in laying hens. The objectives of this study were to identify key functional miRNAs and to elucidate their molecular regulatory mechanisms. Specifically, this study evaluated ovarian senescence in hens at 350, 500 and 700 days of age, observing a decline in egg production, increased follicular atresia, and p53 upregulation. miRNA sequencing analysis identified 44 differentially expressed miRNAs (<strong>DEMs</strong>), among which gga-let-7i exhibited the highest abundance and showed progressive upregulation during aging. Functional assays revealed that gga-let-7i induces cell cycle arrest and promotes cellular senescence in ovarian follicle granulosa cells (<strong>GCs</strong>). Mechanistically, collagen type I alpha 2 chain (<strong><em>COL1A2</em></strong>) was confirmed as a direct target of gga-let-7i, and it has been demonstrated that gga-let-7i accelerates senescence by inhibiting the COL1A2/PI3K/AKT/MDM2 pathway, resulting in p53 accumulation and the downstream cellular senescence signaling pathways activation. These results uncover a novel gga-let-7i/COL1A2 regulatory axis involved in ovarian aging and suggest potential targets for extending reproductive longevity in laying hens.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106542"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative genome-wide association study and transcriptomic analysis to identify candidate genes and pathways for heterophil and lymphocyte traits in white-feathered broilers 白羽肉鸡嗜杂性和淋巴细胞性状的全基因组关联研究和转录组学分析
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-08 DOI: 10.1016/j.psj.2026.106407
Jumei Zheng , Qiao Wang , John F. O’Grady , Zixuan Wang , Man Deng , Jin Zhang , Xiang Li , Yuqing Zhu , David E. MacHugh , Guiping Zhao
Enhancing disease resistance is one of the primary objectives of the poultry industry through breeding. The heterophil to lymphocyte ratio (H/L ratio) represents a critical indicator of stress and immune status in chickens. However, the essential genetic networks and functional genes governing the H/L ratio remain uncharacterized. In this study, by combining genomic and transcriptomic data, we aimed to identify functional variants and key genes regulating the H/L ratio in white-feathered broilers. Using a genome-wide association study (GWAS) analysis of 218 birds, we identified single-nucleotide polymorphisms (SNPs) significantly associated with H/L ratio and H count, respectively. These SNPs were annotated to several candidate genes, including MYO16, AKT3, RBM34, SMOC2, and TOMM20. Functional enrichment analysis revealed that candidate genes were involved in FoxO signalling pathway, mTOR signalling pathway, and other immune-related pathways. Fine-mapping analysis identified potential causal variants at multiple sites, specifically chr1:138395826, chr3:34663003, chr3:34663053, and chr3:34663073. Additionally, through integrating transcriptomic and immune-related phenotypic data using weighted gene co-expression network analysis, key hub genes were identified in the bursa and thymus, respectively. Moreover, combined analysis of candidate and hub genes from the GWAS and transcriptomic analyses, respectively, illustrated that these genes were co-enriched in functionally important pathways, including mTOR, FoxO, and MAPK signaling pathways. In summary, our results indicated that MYO16 and AKT3 may represent potential causal genes associated with H/L ratio, and that multiple immune signaling pathways regulate the balance between heterophil and lymphocyte immune cells in chickens. These findings provide new insights into the genetic architecture of immune-related traits in poultry. Moreover, it is crucial to confirm the biological function of these candidate genes and variants by conducting further verification in larger populations with genetic diversity.
增强抗病能力是家禽业通过育种的主要目标之一。嗜淋巴细胞比(H/L)是鸡应激和免疫状态的重要指标。然而,控制H/L比的基本遗传网络和功能基因仍未被描述。本研究旨在结合基因组学和转录组学数据,鉴定白羽肉鸡H/L比的功能变异和关键基因。通过对218只鸟类的全基因组关联研究(GWAS)分析,我们发现单核苷酸多态性(snp)分别与H/L比率和H计数显著相关。这些snp被注释到几个候选基因上,包括MYO16、AKT3、RBM34、SMOC2和TOMM20。功能富集分析显示,候选基因参与FoxO信号通路、mTOR信号通路等免疫相关通路。精细图谱分析确定了多个位点的潜在因果变异,特别是chr1:138395826、chr3:34663003、chr3:34663053和chr3:34663073。此外,通过使用加权基因共表达网络分析整合转录组学和免疫相关表型数据,分别在法氏囊和胸腺中鉴定出关键枢纽基因。此外,分别从GWAS和转录组学分析中对候选基因和枢纽基因进行综合分析,表明这些基因在功能重要的通路中共同富集,包括mTOR、FoxO和MAPK信号通路。综上所述,我们的研究结果表明MYO16和AKT3可能是与H/L比值相关的潜在致病基因,并且多种免疫信号通路调节着鸡嗜异粒细胞和淋巴细胞免疫细胞之间的平衡。这些发现为家禽免疫相关性状的遗传结构提供了新的见解。此外,通过在具有遗传多样性的更大群体中进行进一步验证来确认这些候选基因和变异的生物学功能是至关重要的。
{"title":"Integrative genome-wide association study and transcriptomic analysis to identify candidate genes and pathways for heterophil and lymphocyte traits in white-feathered broilers","authors":"Jumei Zheng ,&nbsp;Qiao Wang ,&nbsp;John F. O’Grady ,&nbsp;Zixuan Wang ,&nbsp;Man Deng ,&nbsp;Jin Zhang ,&nbsp;Xiang Li ,&nbsp;Yuqing Zhu ,&nbsp;David E. MacHugh ,&nbsp;Guiping Zhao","doi":"10.1016/j.psj.2026.106407","DOIUrl":"10.1016/j.psj.2026.106407","url":null,"abstract":"<div><div>Enhancing disease resistance is one of the primary objectives of the poultry industry through breeding. The heterophil to lymphocyte ratio (H/L ratio) represents a critical indicator of stress and immune status in chickens. However, the essential genetic networks and functional genes governing the H/L ratio remain uncharacterized. In this study, by combining genomic and transcriptomic data, we aimed to identify functional variants and key genes regulating the H/L ratio in white-feathered broilers. Using a genome-wide association study (GWAS) analysis of 218 birds, we identified single-nucleotide polymorphisms (SNPs) significantly associated with H/L ratio and H count, respectively. These SNPs were annotated to several candidate genes, including <em>MYO16, AKT3, RBM34, SMOC2</em>, and <em>TOMM20</em>. Functional enrichment analysis revealed that candidate genes were involved in <em>FoxO signalling pathway, mTOR signalling pathway</em>, and other immune-related pathways. Fine-mapping analysis identified potential causal variants at multiple sites, specifically chr1:138395826, chr3:34663003, chr3:34663053, and chr3:34663073. Additionally, through integrating transcriptomic and immune-related phenotypic data using weighted gene co-expression network analysis, key hub genes were identified in the bursa and thymus, respectively. Moreover, combined analysis of candidate and hub genes from the GWAS and transcriptomic analyses, respectively, illustrated that these genes were co-enriched in functionally important pathways, including <em>mTOR, FoxO</em>, and <em>MAPK signaling pathways</em>. In summary, our results indicated that <em>MYO16</em> and <em>AKT3</em> may represent potential causal genes associated with H/L ratio, and that multiple immune signaling pathways regulate the balance between heterophil and lymphocyte immune cells in chickens. These findings provide new insights into the genetic architecture of immune-related traits in poultry. Moreover, it is crucial to confirm the biological function of these candidate genes and variants by conducting further verification in larger populations with genetic diversity.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106407"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146026252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The combination of matrine and tannic acid protects chickens against intestinal infection caused by Salmonella Typhimurium 苦参碱和单宁酸的组合可以保护鸡免受鼠伤寒沙门氏菌引起的肠道感染。
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-02-02 DOI: 10.1016/j.psj.2026.106571
Hu-Juan Shuai , Xiu-Ping Lv , Wen-Li Tang , Zhi-Kun Yang , Xiang-Bin Song , Chao Ma , Ying Liu , Yong-Da Zhao , Li-Li Guo , Shuai-Cheng Wu
The aim of this study was to investigate the effect of the combination of matrine and tannic acid on intestinal infection in chickens with Salmonella Typhimurium. A model of chicken intestinal infection with S. Typhimurium was established to confirm the protective effect of the combination of matrine and tannic acid in vivo. This combination prolonged survival time, promoted growth, and decreased the bacterial burdens of the liver and duodenum in chickens infected with S. Typhimurium, and was superior to matrine or tannic acid monotherapy. The combination of these substances alleviated the changes in organ indices and liver and spleen congestion, decreased intestinal permeability, and alleviated duodenal lesions in chickens caused by S. Typhimurium. The same combination suppressed the transcription of IL-1β and TNF-α in the intestine of chickens infected with S. Typhimurium, possibly through the downregulation of the mRNA expression of TLR-4/p50/NLRP-3/Caspase-1. Moreover, the combination of matrine and tannic acid decreased the levels of intestinal nitrate and iNOS mRNA in the duodenum of chickens infected with S. Typhimurium. Caecal microbiota analysis revealed that this combination improved gut microbiota dysbiosis in chickens infected with S. Typhimurium, as evidenced by alterations in the abundance of microbiota composition at the phylum (Firmicutes and Actinobacteria, Proteobacteria), family (Bifidobacteriaceae and Enterobacteriaceae), and genus (Lactobacillaceae, Escherichia-Shigella, and [Ruminococcus]_torques_group) levels. In conclusion, the combination of matrine and tannic acid is a viable strategy to protect chickens against S. Typhimurium infection, possibly through the suppression of the inflammatory response and the modulation of the intestinal microecology.
本研究旨在探讨苦参碱与单宁酸联合用药对鼠伤寒沙门菌肠道感染的影响。为验证苦参碱与单宁酸联合用药对鼠伤寒沙门氏菌的体内保护作用,建立了鸡肠道感染鼠伤寒沙门氏菌模型。该组合延长了鼠伤寒沙门氏菌感染鸡的生存时间,促进了生长,减少了肝脏和十二指肠的细菌负荷,优于苦参碱或单宁酸治疗。这些物质联合使用可减轻鼠伤寒沙门氏菌引起的鸡脏器指数和肝脾充血的变化,降低肠道通透性,减轻十二指肠病变。同样的组合抑制了鼠伤寒沙门氏菌感染鸡肠道中IL-1β和TNF-α的转录,可能是通过下调TLR-4/p50/NLRP-3/Caspase-1 mRNA的表达。此外,苦参碱和单宁酸联合使用可降低鼠伤寒沙门氏菌感染鸡的肠道硝酸盐和十二指肠iNOS mRNA水平。盲肠菌群分析显示,该组合改善了鼠伤寒沙门氏菌感染鸡的肠道菌群失调,这可以通过改变门(厚壁菌门、放线菌门、变形菌门)、科(双歧杆菌科和肠杆菌科)和属(乳酸杆菌科、埃希氏志贺氏菌和Ruminococcus _torques_group)的微生物群组成丰度来证明。综上所述,苦参碱和单宁酸联合使用可能通过抑制炎症反应和调节肠道微生态来保护鸡免受鼠伤寒沙门氏菌感染。
{"title":"The combination of matrine and tannic acid protects chickens against intestinal infection caused by Salmonella Typhimurium","authors":"Hu-Juan Shuai ,&nbsp;Xiu-Ping Lv ,&nbsp;Wen-Li Tang ,&nbsp;Zhi-Kun Yang ,&nbsp;Xiang-Bin Song ,&nbsp;Chao Ma ,&nbsp;Ying Liu ,&nbsp;Yong-Da Zhao ,&nbsp;Li-Li Guo ,&nbsp;Shuai-Cheng Wu","doi":"10.1016/j.psj.2026.106571","DOIUrl":"10.1016/j.psj.2026.106571","url":null,"abstract":"<div><div>The aim of this study was to investigate the effect of the combination of matrine and tannic acid on intestinal infection in chickens with <em>Salmonella</em> Typhimurium. A model of chicken intestinal infection with <em>S.</em> Typhimurium was established to confirm the protective effect of the combination of matrine and tannic acid <em>in vivo</em>. This combination prolonged survival time, promoted growth, and decreased the bacterial burdens of the liver and duodenum in chickens infected with <em>S.</em> Typhimurium<em>,</em> and was superior to matrine or tannic acid monotherapy. The combination of these substances alleviated the changes in organ indices and liver and spleen congestion, decreased intestinal permeability, and alleviated duodenal lesions in chickens caused by <em>S.</em> Typhimurium. The same combination suppressed the transcription of <em>IL-1β</em> and <em>TNF-α</em> in the intestine of chickens infected with <em>S.</em> Typhimurium, possibly through the downregulation of the mRNA expression of <em>TLR-4/p50/NLRP-3/Caspase-1</em>. Moreover, the combination of matrine and tannic acid decreased the levels of intestinal nitrate and <em>iNOS</em> mRNA in the duodenum of chickens infected with <em>S.</em> Typhimurium. Caecal microbiota analysis revealed that this combination improved gut microbiota dysbiosis in chickens infected with <em>S.</em> Typhimurium, as evidenced by alterations in the abundance of microbiota composition at the phylum (<em>Firmicutes</em> and <em>Actinobacteria, Proteobacteria</em>), family (<em>Bifidobacteriaceae</em> and <em>Enterobacteriaceae</em>), and genus (<em>Lactobacillaceae, Escherichia-Shigella,</em> and <em>[Ruminococcus]_torques_group</em>) levels. In conclusion, the combination of matrine and tannic acid is a viable strategy to protect chickens against <em>S.</em> Typhimurium infection, possibly through the suppression of the inflammatory response and the modulation of the intestinal microecology.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106571"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146157930","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of monoclonal antibodies for GoAstV-2 VP27 protein and precise mapping of linear antigenic epitopes GoAstV-2 VP27蛋白单克隆抗体的制备及线性抗原表位的精确定位
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-28 DOI: 10.1016/j.psj.2026.106535
Kaiyue Qin , Lingdan Yin , Huanrong Zhang
Since 2016, a novel astrovirus identified as goose astrovirus (GoAstV), is classified into genotypes 1 and 2 (GoAstV-1 and GoAstV-2). GoAstV-2 has caused a severe outbreak of visceral gout in goslings characterized by extensive visceral urate deposition and kidney swelling, resulting in substantial financial losses to the goose farming industry in China. The GoAstV-2 VP27 protein encoded by ORF2 contains neutralizing antigenic epitopes, thus representing a key candidate for the development of diagnostic reagents and epitope vaccines. This study aimed to prepare the monoclonal antibody (mAb) against GoAstV-2 VP27 and identify its epitope. The GoAstV-2 VP27 protein was expressed and purified using a prokaryotic expression system, followed by immunization of BALB/c mice. We employed hybridoma technology to generate a stable monoclonal antibody-secreting cell line targeting GoAstV-2 VP27, which was named 11-39B and characterized as IgG2b with kappa light chain. Furthermore, the mAb 11-39B specifically bound to GoAstV-2 as confirmed by Western blotting (WB), immunofluorescence assay (IFA) and immunohistochemistry (IHC), and potently neutralized GoAstV-2 infection in vivo in a dose-dependent manner. For epitope mapping, sequential truncations of the GoAstV-2 VP27 protein were constructed by eukaryotic expression and tested by WB. The results indicated that peptide 661SLKTS665 was the minimal epitope recognized by mAb 11-39B. Homology and structural analyses demonstrated that the epitope was situated on the surface of the VP27 protein and exhibited high conservation among GoAstV-2 strains but exhibited significant differences in the GoAstV-1 serotype. Our study contributes to a better understanding of the GoAstV-2 VP27 antigenic region and provides a basis for establishing epitope-based GoAstV-2 diagnostic methods and vaccine development.
自2016年以来,一种被鉴定为鹅星状病毒(GoAstV)的新型星状病毒被划分为基因型1和2 (GoAstV-1和GoAstV-2)。GoAstV-2在雏鹅中引起了严重的内脏痛风暴发,其特征是广泛的内脏尿酸沉积和肾脏肿胀,给中国的鹅养殖业造成了巨大的经济损失。ORF2编码的GoAstV-2 VP27蛋白含有中和性抗原表位,因此是开发诊断试剂和表位疫苗的关键候选蛋白。本研究旨在制备抗GoAstV-2 VP27的单克隆抗体(mAb)并鉴定其表位。利用原核表达系统对GoAstV-2 VP27蛋白进行了表达纯化,并对BALB/c小鼠进行了免疫。我们采用杂交瘤技术制备了一株稳定的靶向GoAstV-2 VP27的单克隆抗体分泌细胞系,命名为11-39B,特征为带kappa轻链的IgG2b。此外,经Western blotting (WB)、免疫荧光试验(IFA)和免疫组织化学(IHC)证实,mAb 11-39B特异性结合GoAstV-2,并以剂量依赖的方式在体内有效中和GoAstV-2感染。为了定位表位,我们通过真核表达构建了GoAstV-2 VP27蛋白的序列截断,并进行了WB检测。结果表明,肽661SLKTS665是mAb 11-39B识别的最小表位。同源性和结构分析表明,该表位位于VP27蛋白的表面,在GoAstV-2株中具有较高的保守性,但在GoAstV-1血清型中存在显著差异。我们的研究有助于更好地了解GoAstV-2 VP27抗原区,为建立基于表位的GoAstV-2诊断方法和疫苗开发提供基础。
{"title":"Development of monoclonal antibodies for GoAstV-2 VP27 protein and precise mapping of linear antigenic epitopes","authors":"Kaiyue Qin ,&nbsp;Lingdan Yin ,&nbsp;Huanrong Zhang","doi":"10.1016/j.psj.2026.106535","DOIUrl":"10.1016/j.psj.2026.106535","url":null,"abstract":"<div><div>Since 2016, a novel astrovirus identified as goose astrovirus (GoAstV), is classified into genotypes 1 and 2 (GoAstV-1 and GoAstV-2). GoAstV-2 has caused a severe outbreak of visceral gout in goslings characterized by extensive visceral urate deposition and kidney swelling, resulting in substantial financial losses to the goose farming industry in China. The GoAstV-2 VP27 protein encoded by ORF2 contains neutralizing antigenic epitopes, thus representing a key candidate for the development of diagnostic reagents and epitope vaccines. This study aimed to prepare the monoclonal antibody (mAb) against GoAstV-2 VP27 and identify its epitope. The GoAstV-2 VP27 protein was expressed and purified using a prokaryotic expression system, followed by immunization of BALB/c mice. We employed hybridoma technology to generate a stable monoclonal antibody-secreting cell line targeting GoAstV-2 VP27, which was named 11-39B and characterized as IgG2b with kappa light chain. Furthermore, the mAb 11-39B specifically bound to GoAstV-2 as confirmed by Western blotting (WB), immunofluorescence assay (IFA) and immunohistochemistry (IHC), and potently neutralized GoAstV-2 infection <em>in vivo</em> in a dose-dependent manner. For epitope mapping, sequential truncations of the GoAstV-2 VP27 protein were constructed by eukaryotic expression and tested by WB. The results indicated that peptide <sup>661</sup>SLKTS<sup>665</sup> was the minimal epitope recognized by mAb 11-39B. Homology and structural analyses demonstrated that the epitope was situated on the surface of the VP27 protein and exhibited high conservation among GoAstV-2 strains but exhibited significant differences in the GoAstV-1 serotype. Our study contributes to a better understanding of the GoAstV-2 VP27 antigenic region and provides a basis for establishing epitope-based GoAstV-2 diagnostic methods and vaccine development.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106535"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146080938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Direct and correlated responses to long-term residual feed consumption–based selection in Brown Tsaiya ducks 褐柴鸭长期剩余饲料消耗选择的直接相关响应
IF 4.2 1区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-04-01 Epub Date: 2026-01-12 DOI: 10.1016/j.psj.2026.106433
Yi-Ying Chang , Chih-Feng Chen
Improving feed efficiency (FE) in poultry, particularly in laying ducks, has become increasingly essential for reducing production costs and environmental impact. This study investigated the long-term effects of residual feed consumption (RFC)-based selection on FE and production traits in Brown Tsaiya ducks over nine generations. Two lines were maintained: a selected line (S line), which comprised ducks bred for low RFC over nine generations (G0–G9) of selection, and an unselected control line (C line), which comprised ducks bred randomly under identical management conditions. Selection for low RFC led to substantial reductions in RFC, feed consumption, and feed conversion ratio in the S line, confirming consistent genetic progress in FE compared with that in the C line. Phenotypic differences between the two lines emerged from the fourth generation and became more pronounced in subsequent generations. Although RFC exhibited moderate heritability and strong positive genetic correlations with feed consumption and feed conversion ratio, its relationships with reproductive traits were generally weak. However, the long-term selection response revealed an unfavorable correlated decline in egg mass and egg weight, reflecting a genetic antagonism, confirmed by a highly positive genetic correlation (rg = 0.566) between RFC and egg mass found in the selected line. Furthermore, the S line exhibited reduced additive genetic variance and increased inbreeding over generations, suggesting the accumulation of selection pressure and narrowing of genetic diversity. Despite these challenges, the S line continued to improve in FE without reaching a genetic plateau, highlighting the potential for further genetic gain. These results establish RFC as a valuable selection criterion for enhancing FE in laying ducks but underscore the need for balanced breeding approaches. Incorporating multitrait or restricted selection indices may help sustain both FE gains and egg production performance, ensuring the long-term genetic and economic sustainability of Taiwan’s Brown Tsaiya duck population.
提高家禽的饲料效率(FE),特别是蛋鸭的饲料效率,对于降低生产成本和环境影响已变得越来越重要。本试验研究了基于剩余采食量(RFC)的选择对9代褐柴鸭营养和生产性状的长期影响。维持了两个品系:一个被选择的品系(S品系),由在低RFC条件下饲养的鸭组成,经过9代(G0-G9)的选择;另一个未被选择的控制系(C品系),由在相同管理条件下随机饲养的鸭组成。低RFC的选择导致S系的RFC、饲料消耗量和饲料系数大幅降低,证实了与C系相比,FE的遗传进程是一致的。两系之间的表型差异从第四代开始出现,并在随后的几代中变得更加明显。RFC与饲料消耗和饲料系数具有中等遗传力和较强的正相关,但与生殖性状的关系普遍较弱。然而,长期选择反应表明,卵重和卵重呈负相关下降,反映了一种遗传拮抗作用,在选择的品系中,RFC和卵重之间存在高度正相关(rg = 0.566)。此外,S系表现出加性遗传变异的减少和近交的增加,表明选择压力的积累和遗传多样性的缩小。尽管面临这些挑战,S系在FE方面继续提高,但没有达到遗传平台期,这突出了进一步遗传增益的潜力。这些结果表明,RFC是提高蛋鸭肥力的一个有价值的选择标准,但强调了平衡育种方法的必要性。结合多性状或限制性选择指标可以帮助维持褐柴鸭种群的肥力增益和产蛋性能,确保其遗传和经济的长期可持续性。
{"title":"Direct and correlated responses to long-term residual feed consumption–based selection in Brown Tsaiya ducks","authors":"Yi-Ying Chang ,&nbsp;Chih-Feng Chen","doi":"10.1016/j.psj.2026.106433","DOIUrl":"10.1016/j.psj.2026.106433","url":null,"abstract":"<div><div>Improving feed efficiency (<strong>FE</strong>) in poultry, particularly in laying ducks, has become increasingly essential for reducing production costs and environmental impact. This study investigated the long-term effects of residual feed consumption (<strong>RFC</strong>)-based selection on FE and production traits in Brown Tsaiya ducks over nine generations. Two lines were maintained: a selected line (S line), which comprised ducks bred for low RFC over nine generations (G0–G9) of selection, and an unselected control line (C line), which comprised ducks bred randomly under identical management conditions. Selection for low RFC led to substantial reductions in RFC, feed consumption, and feed conversion ratio in the S line, confirming consistent genetic progress in FE compared with that in the C line. Phenotypic differences between the two lines emerged from the fourth generation and became more pronounced in subsequent generations. Although RFC exhibited moderate heritability and strong positive genetic correlations with feed consumption and feed conversion ratio, its relationships with reproductive traits were generally weak. However, the long-term selection response revealed an unfavorable correlated decline in egg mass and egg weight, reflecting a genetic antagonism, confirmed by a highly positive genetic correlation (r<em><sub>g</sub></em> = 0.566) between RFC and egg mass found in the selected line. Furthermore, the S line exhibited reduced additive genetic variance and increased inbreeding over generations, suggesting the accumulation of selection pressure and narrowing of genetic diversity. Despite these challenges, the S line continued to improve in FE without reaching a genetic plateau, highlighting the potential for further genetic gain. These results establish RFC as a valuable selection criterion for enhancing FE in laying ducks but underscore the need for balanced breeding approaches. Incorporating multitrait or restricted selection indices may help sustain both FE gains and egg production performance, ensuring the long-term genetic and economic sustainability of Taiwan’s Brown Tsaiya duck population.</div></div>","PeriodicalId":20459,"journal":{"name":"Poultry Science","volume":"105 4","pages":"Article 106433"},"PeriodicalIF":4.2,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146026238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Poultry Science
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1