首页 > 最新文献

Protoplasma最新文献

英文 中文
Integrated insights into the cytological, histochemical, and cell wall composition features of Espinosa nothofagi (Hymenoptera) gall tissues: implications for functionality. 对 Espinosa nothofagi(膜翅目)虫瘿组织的细胞学、组织化学和细胞壁组成特征的综合认识:对功能性的影响。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-01-01 Epub Date: 2024-09-09 DOI: 10.1007/s00709-024-01985-4
Lubia María Guedes, Narciso Aguilera, Vinícius Coelho Kuster, Renê Gonçalves da Silva Carneiro, Denis Coelho de Oliveira

Many insect-induced galls are considered complex structures due to their tissue compartmentalization and multiple roles performed by them. The current study investigates the complex interaction between Nothofagus obliqua host plant and the hymenopteran gall-inducer Espinosa nothofagi, focusing on cell wall properties and cytological features. The E. nothofagi galls present an inner cortex with nutritive and storage tissues, as well as outer cortex with epidermis, chlorenchyma, and water-storing parenchyma. The water-storing parenchyma cells are rich in pectins, heteromannans, and xyloglucans in their walls, and have large vacuoles. Homogalacturonans contribute to water retention, and periplasmic spaces function as additional water reservoirs. Nutritive storage cell walls support nutrient storage, with plasmodesmata facilitating nutrient mobilization crucial for larval nutrition. Their primary and sometimes thick secondary cell walls support structural integrity and act as a carbon reserve. The absent labeling of non-cellulosic epitopes indicates a predominantly cellulosic nature in nutritive cell walls, facilitating larval access to lipid, protein, and reducing sugar-rich contents. The nutritive tissue, with functional chloroplasts and high metabolism-related organelles, displays signs of self-sufficiency, emphasizing its role in larval nutrition and cellular maintenance. Overall, the intricate cell wall composition in E. nothofagi galls showcases adaptations for water storage, nutrient mobilization, and larval nutrition, contributing significantly to our understanding of plant-insect interactions.

许多昆虫诱导的虫瘿被认为是复杂的结构,因为它们的组织分区及其发挥的多重作用。本研究调查了 Nothofagus obliqua 寄主植物与膜翅目虫瘿诱导体 Espinosa nothofagi 之间复杂的相互作用,重点关注细胞壁特性和细胞学特征。E.nothofagi虫瘿的内部皮层包括营养组织和贮藏组织,外部皮层包括表皮、脉络膜和贮水实质层。储水实质细胞的细胞壁富含果胶、杂甘露聚糖和木糖,并有大液泡。同聚半乳糖醛酸有助于保持水分,而细胞质周围的空间则起到额外的储水作用。营养贮藏细胞壁支持营养贮藏,质膜有助于调动对幼虫营养至关重要的营养物质。它们的主细胞壁和有时很厚的次细胞壁支持结构的完整性,并起到碳储备的作用。非纤维素表位标记的缺失表明营养细胞壁主要是纤维素性质的,有利于幼虫获取富含脂质、蛋白质和还原糖的内容物。营养组织具有功能性叶绿体和高代谢相关细胞器,显示出自给自足的迹象,强调了其在幼虫营养和细胞维持中的作用。总之,E. nothofagi虫瘿中错综复杂的细胞壁组成展示了对储水、营养调动和幼虫营养的适应,极大地促进了我们对植物-昆虫相互作用的了解。
{"title":"Integrated insights into the cytological, histochemical, and cell wall composition features of Espinosa nothofagi (Hymenoptera) gall tissues: implications for functionality.","authors":"Lubia María Guedes, Narciso Aguilera, Vinícius Coelho Kuster, Renê Gonçalves da Silva Carneiro, Denis Coelho de Oliveira","doi":"10.1007/s00709-024-01985-4","DOIUrl":"10.1007/s00709-024-01985-4","url":null,"abstract":"<p><p>Many insect-induced galls are considered complex structures due to their tissue compartmentalization and multiple roles performed by them. The current study investigates the complex interaction between Nothofagus obliqua host plant and the hymenopteran gall-inducer Espinosa nothofagi, focusing on cell wall properties and cytological features. The E. nothofagi galls present an inner cortex with nutritive and storage tissues, as well as outer cortex with epidermis, chlorenchyma, and water-storing parenchyma. The water-storing parenchyma cells are rich in pectins, heteromannans, and xyloglucans in their walls, and have large vacuoles. Homogalacturonans contribute to water retention, and periplasmic spaces function as additional water reservoirs. Nutritive storage cell walls support nutrient storage, with plasmodesmata facilitating nutrient mobilization crucial for larval nutrition. Their primary and sometimes thick secondary cell walls support structural integrity and act as a carbon reserve. The absent labeling of non-cellulosic epitopes indicates a predominantly cellulosic nature in nutritive cell walls, facilitating larval access to lipid, protein, and reducing sugar-rich contents. The nutritive tissue, with functional chloroplasts and high metabolism-related organelles, displays signs of self-sufficiency, emphasizing its role in larval nutrition and cellular maintenance. Overall, the intricate cell wall composition in E. nothofagi galls showcases adaptations for water storage, nutrient mobilization, and larval nutrition, contributing significantly to our understanding of plant-insect interactions.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"149-165"},"PeriodicalIF":2.5,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154794","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Smoke-water treatment of seeds, an ancient technique for increasing seed vigor. 烟水处理种子,一种提高种子活力的古老技术。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-01-01 Epub Date: 2024-08-17 DOI: 10.1007/s00709-024-01975-6
Nidhi Pandey, Sandeep Nalla, Abhinav Dayal, Prashant Rai, Vaidurya Pratap Sahi

Germination is an essential phenomenon in the life cycle of plants, and a variety of external and internal factors influence it. Fire and the produced smoke have been vital environmental stimulants for the germination of seeds in many plant species, like Leucospermum cordifolium and Serruria florida. These plants do not germinate at all if fire and smoke are not present. This phenomenon of germination in plant species has existed in the ecosystem since ancient times. Various studies to study the response of seeds to smoke and its extracts have been undertaken for stimulation of germination by burning various plant materials and bubbling the smoke produced through water. The application of plant-derived smoke and smoke water is well known for promoting germination, breaking dormancy, and checking abiotic stress. This significantly indicates that plant-derived smoke contains some bioactive metabolites responsible for the physiological metabolism of seed germination and is involved in enhancing seed vigor. The present review deals with the ancient use of smoke and smoke extracts for seed priming, the cost-efficient method of its preparation, the mode of action of karrikins relating to its perception by plants, and its significant effects on various crops, including its ability to check biotic and abiotic stresses.

萌发是植物生命周期中的一个重要现象,受多种内外因素的影响。火和产生的烟雾是许多植物物种种子萌发的重要环境刺激物,如脐带杉(Leucospermum cordifolium)和花叶杉(Serruria florida)。如果没有火和烟,这些植物根本不会发芽。植物物种的这种发芽现象自古以来就存在于生态系统中。为了研究种子对烟雾及其提取物的反应,人们进行了各种研究,通过燃烧各种植物材料并将产生的烟雾通过水泡来刺激发芽。众所周知,应用植物提取的烟雾和烟雾水可以促进发芽、打破休眠和抑制非生物胁迫。这充分说明,植物提取的烟雾中含有一些生物活性代谢物,负责种子萌发的生理代谢,并参与提高种子活力。本综述介绍了烟雾和烟雾提取物用于种子催芽的古老方法、成本效益高的制备方法、与植物感知有关的卡里金作用模式及其对各种作物的显著效果,包括抑制生物和非生物胁迫的能力。
{"title":"Smoke-water treatment of seeds, an ancient technique for increasing seed vigor.","authors":"Nidhi Pandey, Sandeep Nalla, Abhinav Dayal, Prashant Rai, Vaidurya Pratap Sahi","doi":"10.1007/s00709-024-01975-6","DOIUrl":"10.1007/s00709-024-01975-6","url":null,"abstract":"<p><p>Germination is an essential phenomenon in the life cycle of plants, and a variety of external and internal factors influence it. Fire and the produced smoke have been vital environmental stimulants for the germination of seeds in many plant species, like Leucospermum cordifolium and Serruria florida. These plants do not germinate at all if fire and smoke are not present. This phenomenon of germination in plant species has existed in the ecosystem since ancient times. Various studies to study the response of seeds to smoke and its extracts have been undertaken for stimulation of germination by burning various plant materials and bubbling the smoke produced through water. The application of plant-derived smoke and smoke water is well known for promoting germination, breaking dormancy, and checking abiotic stress. This significantly indicates that plant-derived smoke contains some bioactive metabolites responsible for the physiological metabolism of seed germination and is involved in enhancing seed vigor. The present review deals with the ancient use of smoke and smoke extracts for seed priming, the cost-efficient method of its preparation, the mode of action of karrikins relating to its perception by plants, and its significant effects on various crops, including its ability to check biotic and abiotic stresses.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"3-13"},"PeriodicalIF":2.5,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141996281","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of nocodazole and latrunculin B on locomotion of amoeboid cells of Rhizochromulina sp. strain B44 (Heterokontophyta, Dictyochophyceae). nocodazole和latrunculin B对Rhizochromulina sp.菌株B44变形虫细胞运动的影响。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-27 DOI: 10.1007/s00709-024-02024-y
Pavel Safonov, Vadim Khaitov, Olga Palii, Sergei Skarlato, Mariia Berdieva

Rhizochromulina is a genus of unicellular dictyochophycean algae (Heterokontophyta), comprising a single species R. marina and numerous strains. Recently, we described the first arctic rhizochromuline-Rhizochromulina sp. strain B44. Amoeboid cells of this algae are able to transform into flagellates, and this transition can be triggered by prolonged mechanical disturbance. Thin branching pseudopodia of the neighboring rhizochromuline cells fuse to form a meroplasmodium. The pseudopodia contain microtubules, but do not contain actin microfilaments; actin forms the cytoplasmic cytoskeleton and extends only to the bases of the pseudopodia. Microtubule-driven pseudopodia are characteristic to a plethora of eukaryotes, but the role of microtubular and actin cytoskeleton in locomotion of these organisms remains poorly understood. We conducted a series of experiments where amoeboid cells of Rhizochromulina sp. B44 were treated with either 10 µM nocodazole, 10 µM latrunculin B, or both drugs simultaneously. Cellular locomotion was captured on camera, tracked, and then analyzed with the help of the generalized additive mixed model. The obtained results indicate that both drugs, when applied separately, decrease the motility of the studied cells. Unexpectedly, the combined treatment had the opposite effect, as the cells became more motile. The analysis also revealed a non-linear pattern of relationship between motility of amoeboid cells of rhizochromulines and density of their population.

Rhizochromulina是一种单细胞双藻属(Heterokontophyta),由单一种R. marina和多个菌株组成。最近,我们报道了第一个北极根孢杆菌-根孢杆菌菌株B44。这种藻类的变形虫细胞能够转化为鞭毛虫,这种转变可以通过长时间的机械干扰来触发。相邻的根状嗜铬细胞的细分枝伪足融合形成一个源质体。伪足含有微管,但不含肌动蛋白微丝;肌动蛋白形成细胞质细胞骨架,只延伸到假足的基部。微管驱动的假足是大量真核生物的特征,但微管和肌动蛋白细胞骨架在这些生物运动中的作用仍然知之甚少。我们对Rhizochromulina sp. B44的变形虫细胞分别用10µM nocodazole、10µM latrunculin B或同时用这两种药物处理,进行了一系列实验。在摄像机上捕捉细胞运动,跟踪细胞运动,然后利用广义加性混合模型对细胞运动进行分析。结果表明,这两种药物单独使用时,降低了所研究细胞的运动性。出乎意料的是,联合治疗产生了相反的效果,因为细胞变得更有活力。该分析还揭示了根状嗜色胺变形虫细胞的运动性与其种群密度之间的非线性关系。
{"title":"Effects of nocodazole and latrunculin B on locomotion of amoeboid cells of Rhizochromulina sp. strain B44 (Heterokontophyta, Dictyochophyceae).","authors":"Pavel Safonov, Vadim Khaitov, Olga Palii, Sergei Skarlato, Mariia Berdieva","doi":"10.1007/s00709-024-02024-y","DOIUrl":"https://doi.org/10.1007/s00709-024-02024-y","url":null,"abstract":"<p><p>Rhizochromulina is a genus of unicellular dictyochophycean algae (Heterokontophyta), comprising a single species R. marina and numerous strains. Recently, we described the first arctic rhizochromuline-Rhizochromulina sp. strain B44. Amoeboid cells of this algae are able to transform into flagellates, and this transition can be triggered by prolonged mechanical disturbance. Thin branching pseudopodia of the neighboring rhizochromuline cells fuse to form a meroplasmodium. The pseudopodia contain microtubules, but do not contain actin microfilaments; actin forms the cytoplasmic cytoskeleton and extends only to the bases of the pseudopodia. Microtubule-driven pseudopodia are characteristic to a plethora of eukaryotes, but the role of microtubular and actin cytoskeleton in locomotion of these organisms remains poorly understood. We conducted a series of experiments where amoeboid cells of Rhizochromulina sp. B44 were treated with either 10 µM nocodazole, 10 µM latrunculin B, or both drugs simultaneously. Cellular locomotion was captured on camera, tracked, and then analyzed with the help of the generalized additive mixed model. The obtained results indicate that both drugs, when applied separately, decrease the motility of the studied cells. Unexpectedly, the combined treatment had the opposite effect, as the cells became more motile. The analysis also revealed a non-linear pattern of relationship between motility of amoeboid cells of rhizochromulines and density of their population.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142897101","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Functional crosstalk of sucrose and G protein signaling in maize thermotolerance by modulating osmoregulation system. 通过渗透调节系统调节玉米耐热性中蔗糖和G蛋白信号的功能串扰。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-19 DOI: 10.1007/s00709-024-02020-2
Hong-Yan Chen, Zhong-Guang Li

Sucrose (SUC) is a signaling molecule with multiple physiological functions. G protein is a kind of receptor that converts extracellular first messenger into intracellular second messenger. However, it is little known that SUC interplays with G protein signaling in maize thermotolerance. In this work, using maize seedlings as materials, the interplay between SUC and G protein signaling in maize thermotolerance was investigated. The results indicate that heat stress-decreased survival percentage and tissue viability of the seedlings was mitigated by SUC. Similarly, heat stress-increased malondialdehyde content and electrolyte leakage also was reduced by SUC. These findings show that SUC can potentially enhance thermotolerance in maize seedlings. Also, SUC-enhanced thermotolerance was abolished by suramin (G protein inhibitor) and N-ethylmaleimide (SUC transport inhibitor), but enhanced by 3-O-methyl-D-glucose (G protein activator), indicating the interplay of SUC and G protein signaling in maize thermotolerance. To investigate the possible mechanism behind SUC-G protein interaction in enhancing maize thermotolerance, osmoregulation in mesocotyls of seedlings were evaluated before and after heat stress. The results suggest that osmolytes (SUC, glucose, fructose, total soluble sugar, proline, and glycine betaine) contents in mesocotyls under non-heat and heat stress were increased by SUC in varying degrees. Likewise, the osmolyte-metabolizing enzymes (sucrose-phosphate synthase, sucrose synthase, pyrroline-5-carboxylate synthase, ornithine aminotransferase, betaine-aldehyde dehydrogenase, and trehalase) activities were enhanced by SUC. Analogously, ZmSPS1, ZmSUS6, ZmP5CS, ZmOAT, ZmBADH, and ZmTRE1 expression in mesocotyls was up-regulated by SUC to different extent. These findings illustrate that the functional crosstalk of sucrose and G protein signaling in maize thermotolerance by modulating osmoregulation system.

蔗糖(SUC)是一种具有多种生理功能的信号分子。G蛋白是一种将细胞外第一信使转化为细胞内第二信使的受体。然而,人们对SUC在玉米耐热性中与G蛋白信号相互作用知之甚少。本研究以玉米幼苗为材料,研究了SUC与G蛋白信号在玉米耐热性中的相互作用。结果表明,SUC可减轻热胁迫对幼苗成活率和组织活力的影响。同样,热应力增加丙二醛含量和电解质泄漏也减少了SUC。这些发现表明,SUC可以潜在地增强玉米幼苗的耐热性。此外,sulamin (G蛋白抑制剂)和n -乙基马酰亚胺(SUC转运抑制剂)会破坏SUC增强的耐热性,但3- o -甲基- d -葡萄糖(G蛋白激活剂)会增强SUC和G蛋白信号在玉米耐热性中的相互作用。为了探讨sc - g蛋白相互作用增强玉米耐热性的可能机制,研究了热胁迫前后玉米幼苗中胚轴的渗透调节作用。结果表明,在非热胁迫和热胁迫下,中胚轴渗透物(SUC、葡萄糖、果糖、总可溶性糖、脯氨酸和甜菜碱)含量均不同程度地增加。同样,渗透代谢酶(蔗糖-磷酸合成酶、蔗糖合成酶、吡啶-5-羧酸合成酶、鸟氨酸转氨酶、甜菜醛脱氢酶和海藻化酶)的活性也被SUC提高。类似地,中胚轴细胞中ZmSPS1、ZmSUS6、ZmP5CS、ZmOAT、ZmBADH和ZmTRE1的表达也被SUC不同程度上调。这些研究结果表明,蔗糖和G蛋白信号通过调节渗透调节系统在玉米耐热性中的功能串扰。
{"title":"Functional crosstalk of sucrose and G protein signaling in maize thermotolerance by modulating osmoregulation system.","authors":"Hong-Yan Chen, Zhong-Guang Li","doi":"10.1007/s00709-024-02020-2","DOIUrl":"https://doi.org/10.1007/s00709-024-02020-2","url":null,"abstract":"<p><p>Sucrose (SUC) is a signaling molecule with multiple physiological functions. G protein is a kind of receptor that converts extracellular first messenger into intracellular second messenger. However, it is little known that SUC interplays with G protein signaling in maize thermotolerance. In this work, using maize seedlings as materials, the interplay between SUC and G protein signaling in maize thermotolerance was investigated. The results indicate that heat stress-decreased survival percentage and tissue viability of the seedlings was mitigated by SUC. Similarly, heat stress-increased malondialdehyde content and electrolyte leakage also was reduced by SUC. These findings show that SUC can potentially enhance thermotolerance in maize seedlings. Also, SUC-enhanced thermotolerance was abolished by suramin (G protein inhibitor) and N-ethylmaleimide (SUC transport inhibitor), but enhanced by 3-O-methyl-D-glucose (G protein activator), indicating the interplay of SUC and G protein signaling in maize thermotolerance. To investigate the possible mechanism behind SUC-G protein interaction in enhancing maize thermotolerance, osmoregulation in mesocotyls of seedlings were evaluated before and after heat stress. The results suggest that osmolytes (SUC, glucose, fructose, total soluble sugar, proline, and glycine betaine) contents in mesocotyls under non-heat and heat stress were increased by SUC in varying degrees. Likewise, the osmolyte-metabolizing enzymes (sucrose-phosphate synthase, sucrose synthase, pyrroline-5-carboxylate synthase, ornithine aminotransferase, betaine-aldehyde dehydrogenase, and trehalase) activities were enhanced by SUC. Analogously, ZmSPS1, ZmSUS6, ZmP5CS, ZmOAT, ZmBADH, and ZmTRE1 expression in mesocotyls was up-regulated by SUC to different extent. These findings illustrate that the functional crosstalk of sucrose and G protein signaling in maize thermotolerance by modulating osmoregulation system.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142855152","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Use of polyethylene glycol as an alternative to optimal cutting temperature medium in freeze sectioning for plant histochemical studies. 使用聚乙二醇作为植物组织化学研究中冷冻切片的最佳切割温度介质的替代品。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-18 DOI: 10.1007/s00709-024-02008-y
Shobhon Paul, Pallabi Saha, Adinpunya Mitra

Plant anatomical and histochemical studies are concerned with the structural organization of tissues as well as localization of various metabolites and enzyme activity inside cells and tissues. Traditionally, rotary microtomes are used for paraffin and resin-embedded samples which provide excellent preservation of tissue morphology but removes enzymes, lipid components, and various specialized metabolites. Freeze sectioning apparently remained unexplored in plant histology because of the presence of rigid cell walls and highly vacuolated cytoplasm in plant tissues. In this study, we have described a simple cryostat-based sectioning technique using polyethylene glycol (PEG) as embedding medium after glycerol infiltration that protects the plant tissues from freezing and thawing damage. We have also compared the suitability of inexpensive aqueous PEG solution as compared to commercially available optimal cutting temperature (OCT) medium and obtained identical microscopic images. Diverse plant organs from different genera were sectioned to check the application of this method in plant anatomical studies. In all the cases, cross sections were shown to be well preserved similar to paraffin-embedded plant tissues. In addition, histochemical analyses showed retention of metabolites and even enzymes in the tissues, which can make this method an alternate choice in cryo-microtomy replacing the expensive OCT medium.

植物解剖和组织化学研究涉及组织的结构组织,以及细胞和组织内各种代谢物和酶活性的定位。传统上,旋转显微组用于石蜡和树脂包埋的样品,提供良好的组织形态保存,但去除酶,脂质成分和各种专门的代谢物。由于植物组织中存在刚性细胞壁和高度空泡化的细胞质,冷冻切片显然在植物组织学中尚未被探索。在这项研究中,我们描述了一种简单的基于低温恒温器的切片技术,使用聚乙二醇(PEG)作为甘油浸润后的包埋介质,保护植物组织免受冻融损伤。我们还比较了廉价的PEG水溶液与市售的最佳切割温度(OCT)介质的适用性,并获得了相同的显微图像。对不同属的植物器官进行了切片,验证了该方法在植物解剖研究中的应用。在所有情况下,横截面都被证明保存得很好,类似于石蜡包埋的植物组织。此外,组织化学分析显示组织中代谢物甚至酶的保留,这使得该方法可以替代昂贵的OCT培养基作为冷冻切片的替代选择。
{"title":"Use of polyethylene glycol as an alternative to optimal cutting temperature medium in freeze sectioning for plant histochemical studies.","authors":"Shobhon Paul, Pallabi Saha, Adinpunya Mitra","doi":"10.1007/s00709-024-02008-y","DOIUrl":"https://doi.org/10.1007/s00709-024-02008-y","url":null,"abstract":"<p><p>Plant anatomical and histochemical studies are concerned with the structural organization of tissues as well as localization of various metabolites and enzyme activity inside cells and tissues. Traditionally, rotary microtomes are used for paraffin and resin-embedded samples which provide excellent preservation of tissue morphology but removes enzymes, lipid components, and various specialized metabolites. Freeze sectioning apparently remained unexplored in plant histology because of the presence of rigid cell walls and highly vacuolated cytoplasm in plant tissues. In this study, we have described a simple cryostat-based sectioning technique using polyethylene glycol (PEG) as embedding medium after glycerol infiltration that protects the plant tissues from freezing and thawing damage. We have also compared the suitability of inexpensive aqueous PEG solution as compared to commercially available optimal cutting temperature (OCT) medium and obtained identical microscopic images. Diverse plant organs from different genera were sectioned to check the application of this method in plant anatomical studies. In all the cases, cross sections were shown to be well preserved similar to paraffin-embedded plant tissues. In addition, histochemical analyses showed retention of metabolites and even enzymes in the tissues, which can make this method an alternate choice in cryo-microtomy replacing the expensive OCT medium.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142847541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep learning-based cytoskeleton segmentation for accurate high-throughput measurement of cytoskeleton density. 基于深度学习的细胞骨架分割,用于细胞骨架密度的精确高通量测量。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-18 DOI: 10.1007/s00709-024-02019-9
Ryota Horiuchi, Asuka Kamimura, Yuga Hanaki, Hikari Matsumoto, Minako Ueda, Takumi Higaki

Microscopic analyses of cytoskeleton organization are crucial for understanding various cellular activities, including cell proliferation and environmental responses in plants. Traditionally, assessments of cytoskeleton dynamics have been qualitative, relying on microscopy-assisted visual inspection. However, the transition to quantitative digital microscopy has introduced new technical challenges, with segmentation of cytoskeleton structures proving particularly demanding. In this study, we examined the utility of a deep learning-based segmentation method for accurate quantitative evaluation of cytoskeleton organization using confocal microscopic images of the cortical microtubules in tobacco BY-2 cells. The results showed that, although conventional methods sufficed for measurement of cytoskeleton angles and parallelness, the deep learning-based method significantly improved the accuracy of density measurements. To assess the versatility of the method, we extended our analysis to physiologically significant models in the context of changes in cytoskeleton density, namely Arabidopsis thaliana guard cells and zygotes. The deep learning-based method successfully improved the accuracy of cytoskeleton density measurements for quantitative evaluations of physiological changes in both stomatal movement in guard cells and intracellular polarization in elongating zygotes, confirming its utility in these applications. The results demonstrate the effectiveness of deep learning-based segmentation in providing precise and high-throughput measurements of cytoskeleton density, and has the potential to automate and expedite analyses of large-scale image datasets.

细胞骨架组织的显微分析对于理解各种细胞活动,包括细胞增殖和环境反应至关重要。传统上,对细胞骨架动力学的评估是定性的,依赖于显微镜辅助的视觉检查。然而,向定量数字显微镜的过渡带来了新的技术挑战,细胞骨架结构的分割被证明是特别苛刻的。在这项研究中,我们利用烟草BY-2细胞皮层微管的共聚焦显微图像,研究了基于深度学习的分割方法对细胞骨架组织进行精确定量评估的效用。结果表明,尽管传统方法足以测量细胞骨架角度和平行度,但基于深度学习的方法显著提高了密度测量的准确性。为了评估该方法的通用性,我们将分析扩展到细胞骨架密度变化背景下的生理重要模型,即拟南芥保护细胞和合子。基于深度学习的方法成功地提高了细胞骨架密度测量的准确性,用于定量评估保护细胞气孔运动和伸长合子细胞内极化的生理变化,证实了其在这些应用中的实用性。结果表明,基于深度学习的分割在提供精确和高通量的细胞骨架密度测量方面是有效的,并且具有自动化和加速大规模图像数据集分析的潜力。
{"title":"Deep learning-based cytoskeleton segmentation for accurate high-throughput measurement of cytoskeleton density.","authors":"Ryota Horiuchi, Asuka Kamimura, Yuga Hanaki, Hikari Matsumoto, Minako Ueda, Takumi Higaki","doi":"10.1007/s00709-024-02019-9","DOIUrl":"https://doi.org/10.1007/s00709-024-02019-9","url":null,"abstract":"<p><p>Microscopic analyses of cytoskeleton organization are crucial for understanding various cellular activities, including cell proliferation and environmental responses in plants. Traditionally, assessments of cytoskeleton dynamics have been qualitative, relying on microscopy-assisted visual inspection. However, the transition to quantitative digital microscopy has introduced new technical challenges, with segmentation of cytoskeleton structures proving particularly demanding. In this study, we examined the utility of a deep learning-based segmentation method for accurate quantitative evaluation of cytoskeleton organization using confocal microscopic images of the cortical microtubules in tobacco BY-2 cells. The results showed that, although conventional methods sufficed for measurement of cytoskeleton angles and parallelness, the deep learning-based method significantly improved the accuracy of density measurements. To assess the versatility of the method, we extended our analysis to physiologically significant models in the context of changes in cytoskeleton density, namely Arabidopsis thaliana guard cells and zygotes. The deep learning-based method successfully improved the accuracy of cytoskeleton density measurements for quantitative evaluations of physiological changes in both stomatal movement in guard cells and intracellular polarization in elongating zygotes, confirming its utility in these applications. The results demonstrate the effectiveness of deep learning-based segmentation in providing precise and high-throughput measurements of cytoskeleton density, and has the potential to automate and expedite analyses of large-scale image datasets.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142847538","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ultrastructure of the ejaculatory duct of Terrobittacus implicatus (Mecoptera: Bittacidae). 刺蝽射精管的超微结构。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-16 DOI: 10.1007/s00709-024-02018-w
Qi-Hui Lyu, Shuang Xue, Xiao-Fei Wei, Wen-Jie Dong

The unique mating behavior of Bittacidae has been extensively studied, yet the mechanisms underlying internal sperm transport and temporary storage before mating remain enigmatic. Herein, we aim to elucidate these mechanisms by investigating the fine structure of the ejaculatory duct, which serves for sperm transport and temporary storage. The ultrastructure of the ejaculatory duct of Terrobittacus implicatus (Mecoptera: Bittacidae) was examined by light and transmission electron microscopy for the first time in this study. The ejaculatory duct is composed of a median duct and a pair of symmetrical accessory sacs. In the proximal fifth portion, the two accessory sacs encompass the median duct in two loose layers. In the remaining distal portion, the median duct remains centrally positioned, and two accessory sacs symmetrically enclose its lateral and ventral surfaces. The distal median duct consists of a basal lamina, an unevenly arranged epithelium, a large subcuticular cavity, and a narrow inner cuticle. The distal accessory sac can be divided into three areas with distinct ultrastructural features. The ejaculatory duct exhibits conspicuous secretory activity, and given the absence of an ectodermal accessory gland in males, it is possible that the ejaculatory duct may fulfill additional glandular function. The narrow lumen and the reduced muscular sheath of the ejaculatory duct may be associated with the unique mechanism of ejaculation and mating.

Bittacidae的独特交配行为已被广泛研究,但精子内部运输和交配前临时储存的机制仍然是一个谜。在这里,我们的目的是通过研究射精管的精细结构来阐明这些机制,射精管是精子运输和临时储存的工具。本文首次采用光镜和透射电子显微镜对隐翅蚁射精管的超微结构进行了观察。射精管由中间管和一对对称的附属囊组成。在近端第五部分,两个附属囊以两层松散的形式包围正中导管。在剩余的远端部分,正中导管仍处于中央位置,两个附属囊对称地包围其外侧和腹侧表面。远端正中管由基底层、排列不均匀的上皮、大的角质层下腔和狭窄的内角质层组成。远侧副囊可分为三个区域,具有明显的超微结构特征。射精管表现出明显的分泌活性,鉴于男性没有外胚层副腺,射精管可能还具有额外的腺体功能。射精管狭窄的管腔和收缩的肌鞘可能与射精和交配的独特机制有关。
{"title":"Ultrastructure of the ejaculatory duct of Terrobittacus implicatus (Mecoptera: Bittacidae).","authors":"Qi-Hui Lyu, Shuang Xue, Xiao-Fei Wei, Wen-Jie Dong","doi":"10.1007/s00709-024-02018-w","DOIUrl":"https://doi.org/10.1007/s00709-024-02018-w","url":null,"abstract":"<p><p>The unique mating behavior of Bittacidae has been extensively studied, yet the mechanisms underlying internal sperm transport and temporary storage before mating remain enigmatic. Herein, we aim to elucidate these mechanisms by investigating the fine structure of the ejaculatory duct, which serves for sperm transport and temporary storage. The ultrastructure of the ejaculatory duct of Terrobittacus implicatus (Mecoptera: Bittacidae) was examined by light and transmission electron microscopy for the first time in this study. The ejaculatory duct is composed of a median duct and a pair of symmetrical accessory sacs. In the proximal fifth portion, the two accessory sacs encompass the median duct in two loose layers. In the remaining distal portion, the median duct remains centrally positioned, and two accessory sacs symmetrically enclose its lateral and ventral surfaces. The distal median duct consists of a basal lamina, an unevenly arranged epithelium, a large subcuticular cavity, and a narrow inner cuticle. The distal accessory sac can be divided into three areas with distinct ultrastructural features. The ejaculatory duct exhibits conspicuous secretory activity, and given the absence of an ectodermal accessory gland in males, it is possible that the ejaculatory duct may fulfill additional glandular function. The narrow lumen and the reduced muscular sheath of the ejaculatory duct may be associated with the unique mechanism of ejaculation and mating.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142829767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of sucrose in maintaining pollen viability and germinability in Corylus avellana L.: a possible strategy to cope with climate variability. 蔗糖在维持榛花粉活力和萌发性中的作用:应对气候变化的一种可能策略。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-11 DOI: 10.1007/s00709-024-02015-z
C Brandoli, A Mortada, C Todeschini, C Siniscalco, E Sgarbi

In this work, we propose a possible correlation between carbohydrate content in hazelnut pollen (wild type) and viability/germinability, also in a perspective of adaptation to climate variability. Samples from four different cultivation fields in Italy showed values of pollen viability characterized by high levels, ranging between 77.3 and 98.4% and a unique trend during the flowering period for each accession. When subjected to dehydration in controlled environment, pollen reduced the levels of viability to almost zero but recovered the initial values when rehydrated. The presence of anomalous pollen was found to be not significant, always below 4% in all accessions. The analysis on starch content gave negative results both when it was determined biochemically and detected by histological staining. Sucrose content resulted always higher than glucose and fructose in all the accessions analyzed. Its concentration throughout the dispersal phases reflected the trend of both pollen viability and germinability. These data seem to suggest a direct involvement of sucrose in the protection of plasma membranes from dehydration and the maintenance of pollen viability and germinability. This study demonstrates the sensitivity of hazelnut pollen to climatic fluctuations, particularly to air dry condition, stressing a significant role of sucrose in maintaing viablity and germinabilty during all dispersal period.

在这项工作中,我们提出了榛子花粉(野生型)中碳水化合物含量与活力/发芽能力之间的可能相关性,也从适应气候变化的角度出发。来自意大利4个不同栽培地的花粉活力值均处于较高水平,在77.3 ~ 98.4%之间,且在开花期间具有独特的趋势。在控制环境下脱水后,花粉活力降低到几乎为零,再水化后恢复到初始水平。异常花粉的存在不显著,在所有材料中均低于4%。对淀粉含量的分析,无论是生化测定还是组织染色检测,结果均为阴性。蔗糖的含量均高于葡萄糖和果糖。它在整个传播阶段的浓度反映了花粉活力和萌发能力的变化趋势。这些数据似乎表明蔗糖直接参与保护质膜免受脱水和维持花粉活力和萌发能力。本研究证明了榛子花粉对气候波动的敏感性,特别是对空气干燥条件的敏感性,强调了蔗糖在整个传播过程中保持活力和萌发性的重要作用。
{"title":"The role of sucrose in maintaining pollen viability and germinability in Corylus avellana L.: a possible strategy to cope with climate variability.","authors":"C Brandoli, A Mortada, C Todeschini, C Siniscalco, E Sgarbi","doi":"10.1007/s00709-024-02015-z","DOIUrl":"https://doi.org/10.1007/s00709-024-02015-z","url":null,"abstract":"<p><p>In this work, we propose a possible correlation between carbohydrate content in hazelnut pollen (wild type) and viability/germinability, also in a perspective of adaptation to climate variability. Samples from four different cultivation fields in Italy showed values of pollen viability characterized by high levels, ranging between 77.3 and 98.4% and a unique trend during the flowering period for each accession. When subjected to dehydration in controlled environment, pollen reduced the levels of viability to almost zero but recovered the initial values when rehydrated. The presence of anomalous pollen was found to be not significant, always below 4% in all accessions. The analysis on starch content gave negative results both when it was determined biochemically and detected by histological staining. Sucrose content resulted always higher than glucose and fructose in all the accessions analyzed. Its concentration throughout the dispersal phases reflected the trend of both pollen viability and germinability. These data seem to suggest a direct involvement of sucrose in the protection of plasma membranes from dehydration and the maintenance of pollen viability and germinability. This study demonstrates the sensitivity of hazelnut pollen to climatic fluctuations, particularly to air dry condition, stressing a significant role of sucrose in maintaing viablity and germinabilty during all dispersal period.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142813779","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Autophagic activity in the midgut cells of three arachnids responds selectively to different modes of overwintering in caves. 三种蛛形纲动物中肠细胞的自噬活性选择性地响应不同的洞穴越冬模式。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-04 DOI: 10.1007/s00709-024-02009-x
Saška Lipovšek, Tanja Vajs, Barbara Dariš, Tone Novak, Peter Kozel

Autophagy is a highly conserved metabolic process that regulates cellular homeostasis and energy supply by degrading dysfunctional and excess cell constituents and reserve materials into products that are reused in metabolic and biosynthetic pathways. Macroautophagy is the best studied form of autophagy in invertebrates. Starvation is a common stress factor triggering autophagy in overwintering animals. In arachnids, the midgut diverticula cells perform many vital metabolic functions and are therefore critically involved in the response to starvation. Here we studied macroautophagy in three species which apply different modes for overwintering in caves: the harvestmen Gyas annulatus in diapause, Amilenus aurantiacus with ongoing ontogenesis under fasting conditions, and the spider Meta menardi, which feeds opportunistically even in winter. The main goal was to find eventual qualitative and quantitative differences in autophagic processes by inspecting TEM micrographs. In all three species, the rates of midgut epithelial cells with autophagic structures gradually increased during overwintering, but were significantly lower in G. annulatus in the middle and at the end of overwintering than in the other two species, owing to metabolic activity having been more suppressed. Decomposition of mitochondria and glycogen took place in autophagic structures in all three species. Moreover, spherite disintegration in A. aurantiacus and a special form of lipid disintegration through "lipid bubbly structures" in M. menardi indicate the crucial involvment of selective autophagy, while no specific autophagy was observed in G. annulatus. We conclude that autophagic activities support overwintering in different ways in the species studied.

自噬是一种高度保守的代谢过程,通过将功能失调和过剩的细胞成分和储备物质降解为代谢和生物合成途径中重复使用的产物,调节细胞稳态和能量供应。巨噬是无脊椎动物中研究得最好的自噬形式。饥饿是引发越冬动物自噬的常见应激因素。在蛛形纲动物中,中肠憩室细胞执行许多重要的代谢功能,因此在对饥饿的反应中起关键作用。本研究研究了三种不同洞穴越冬模式的巨噬现象:滞育状态下的环虾(Gyas annulatus)、禁食状态下仍在进行个体发育的金螯虾(Amilenus aurantiacus)和即使在冬季也在机会性进食的梅纳尔蒂蜘蛛(Meta menardi)。主要目的是通过检查TEM显微照片来发现自噬过程中最终的定性和定量差异。在这三个物种中,具有自噬结构的中肠上皮细胞的比例在越冬过程中逐渐增加,但由于代谢活性受到更大的抑制,在越冬中期和结束时,环斑马鱼的比例明显低于其他两个物种。线粒体和糖原的分解都发生在这三个物种的自噬结构中。此外,aurantiacus的球粒崩解和M. menardi通过“脂质气泡结构”的特殊形式的脂质崩解表明选择性自噬的关键参与,而G. annulatus没有观察到特异性自噬。我们得出结论,自噬活动以不同的方式支持所研究物种的越冬。
{"title":"Autophagic activity in the midgut cells of three arachnids responds selectively to different modes of overwintering in caves.","authors":"Saška Lipovšek, Tanja Vajs, Barbara Dariš, Tone Novak, Peter Kozel","doi":"10.1007/s00709-024-02009-x","DOIUrl":"https://doi.org/10.1007/s00709-024-02009-x","url":null,"abstract":"<p><p>Autophagy is a highly conserved metabolic process that regulates cellular homeostasis and energy supply by degrading dysfunctional and excess cell constituents and reserve materials into products that are reused in metabolic and biosynthetic pathways. Macroautophagy is the best studied form of autophagy in invertebrates. Starvation is a common stress factor triggering autophagy in overwintering animals. In arachnids, the midgut diverticula cells perform many vital metabolic functions and are therefore critically involved in the response to starvation. Here we studied macroautophagy in three species which apply different modes for overwintering in caves: the harvestmen Gyas annulatus in diapause, Amilenus aurantiacus with ongoing ontogenesis under fasting conditions, and the spider Meta menardi, which feeds opportunistically even in winter. The main goal was to find eventual qualitative and quantitative differences in autophagic processes by inspecting TEM micrographs. In all three species, the rates of midgut epithelial cells with autophagic structures gradually increased during overwintering, but were significantly lower in G. annulatus in the middle and at the end of overwintering than in the other two species, owing to metabolic activity having been more suppressed. Decomposition of mitochondria and glycogen took place in autophagic structures in all three species. Moreover, spherite disintegration in A. aurantiacus and a special form of lipid disintegration through \"lipid bubbly structures\" in M. menardi indicate the crucial involvment of selective autophagy, while no specific autophagy was observed in G. annulatus. We conclude that autophagic activities support overwintering in different ways in the species studied.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142771735","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification and expression analysis of phosphate transporter (PHT) genes in Brachypodium distachyon in response to phosphorus deficiency. 磷转运蛋白(PHT)基因的鉴定与表达分析。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2024-12-03 DOI: 10.1007/s00709-024-02014-0
Chiraz Friji, Hatem Boubakri, Luisa M Martinez, Laura Ruiz Torres, Antonio José Manzaneda, Mhemmed Gandour

Phosphorus (P) is a macronutrient that plays a crucial role in critical plant functions. Phosphate transporters (PHTs) ensure the acquisition and translocation of Pi in the plant, thereby playing a key role in maintaining normal plant growth under Pi deficiency conditions. In Brachypodium distachyon, the grass model system, the function of individual PHT genes, remains largely unknown. Here, we identified the complete PHT gene family in B. distachyon, for the first time, and analyzed their expression profiles under Pi deficiency. Overall, 25 PHT genes in B. distachyon (BdPHTs) were identified, which were divided into four clades (PHT1-4). BdPHT genes were found to be unevenly distributed across the five chromosomes. Both segmental and tandem duplication events contributed to PHT gene expansion in B. distachyon which underwent a strong purifying selection. Moreover, exon-intron organization and motif composition were conserved within each PHT group consolidating the classification of the phylogenetic tree. Motif composition differs among the four PHT groups, indicating their functional divergence. Gene expression analysis using real-time quantitative PCR revealed that two BdPHT1 genes (BdPHT1.9 and BdPHT1.10) were upregulated in leaves, and seven (BdPHT1.9, BdPHT1.8, BdPHT1.7, BdPHT1.11, BdPHT1.12, BdPHT1.5, and BdPHT1.13) in roots under P deficiency suggesting their involvement in P uptake and translocation. Therefore, these results lay the foundation for future functional analyses in B. distachyon to improve P deficiency tolerance in B. distachyon and other cereals.

磷(P)是一种常量营养素,在植物的关键功能中起着至关重要的作用。磷酸盐转运体(pht)保证了植物中磷的获取和转运,从而在缺磷条件下维持植物的正常生长中发挥关键作用。在短茅中,草的模式系统,单个PHT基因的功能,在很大程度上仍然是未知的。本研究首次鉴定出了双胞杆菌PHT基因的完整家族,并分析了其在缺磷条件下的表达谱。共鉴定出25个PHT基因,分为4个支系(PHT1-4)。BdPHT基因在5条染色体上分布不均匀。片段复制和串联复制都促进了PHT基因在双歧杆菌中扩增,并经历了强烈的纯化选择。此外,每个PHT组的外显子-内含子组织和基序组成都是保守的,巩固了系统发育树的分类。四个PHT组的基序组成不同,表明它们的功能差异。实时定量PCR分析结果显示,缺磷条件下,叶片中2个BdPHT1基因(BdPHT1.9和BdPHT1.10)表达上调,根部中7个基因(BdPHT1.9、BdPHT1.8、BdPHT1.7、BdPHT1.11、BdPHT1.12、BdPHT1.5和BdPHT1.13)表达上调,提示它们参与了磷的吸收和转运。因此,这些结果为进一步分析双歧杆菌的功能奠定了基础,以提高双歧杆菌和其他谷物对缺磷的耐受性。
{"title":"Identification and expression analysis of phosphate transporter (PHT) genes in Brachypodium distachyon in response to phosphorus deficiency.","authors":"Chiraz Friji, Hatem Boubakri, Luisa M Martinez, Laura Ruiz Torres, Antonio José Manzaneda, Mhemmed Gandour","doi":"10.1007/s00709-024-02014-0","DOIUrl":"https://doi.org/10.1007/s00709-024-02014-0","url":null,"abstract":"<p><p>Phosphorus (P) is a macronutrient that plays a crucial role in critical plant functions. Phosphate transporters (PHTs) ensure the acquisition and translocation of Pi in the plant, thereby playing a key role in maintaining normal plant growth under Pi deficiency conditions. In Brachypodium distachyon, the grass model system, the function of individual PHT genes, remains largely unknown. Here, we identified the complete PHT gene family in B. distachyon, for the first time, and analyzed their expression profiles under Pi deficiency. Overall, 25 PHT genes in B. distachyon (BdPHTs) were identified, which were divided into four clades (PHT1-4). BdPHT genes were found to be unevenly distributed across the five chromosomes. Both segmental and tandem duplication events contributed to PHT gene expansion in B. distachyon which underwent a strong purifying selection. Moreover, exon-intron organization and motif composition were conserved within each PHT group consolidating the classification of the phylogenetic tree. Motif composition differs among the four PHT groups, indicating their functional divergence. Gene expression analysis using real-time quantitative PCR revealed that two BdPHT1 genes (BdPHT1.9 and BdPHT1.10) were upregulated in leaves, and seven (BdPHT1.9, BdPHT1.8, BdPHT1.7, BdPHT1.11, BdPHT1.12, BdPHT1.5, and BdPHT1.13) in roots under P deficiency suggesting their involvement in P uptake and translocation. Therefore, these results lay the foundation for future functional analyses in B. distachyon to improve P deficiency tolerance in B. distachyon and other cereals.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2024-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142771741","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Protoplasma
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1