首页 > 最新文献

Protoplasma最新文献

英文 中文
Exploring effectiveness of salicylic acid and methyl jasmonate elicitors in influencing growth performance, epigenetic regulation, gene transcription, and secondary metabolism in pepper (Capsicum annuum): an in vitro biological assessment. 探索水杨酸和茉莉酸甲酯激发子对辣椒生长性能、表观遗传调控、基因转录和次生代谢的影响:一项体外生物学评估。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-07-08 DOI: 10.1007/s00709-025-02092-8
Zeinab Hasanvand, Alireza Iranbakhsh, Sara Saadatmand, Zahra Oraghi Ardebili

Epigenetic responses of in vitro-cultured plants to elicitation with salicylic acid (SA) and methyl jasmonate (MJ) have been little explored. This study addresses how pepper seedlings respond to incorporating SA (0 and 10 µM) and/or MJ (0 and 10 µM) into the culture medium at physiological and molecular levels. The individual application of MJ or SA enhanced root fresh weight by an average of 59.8%. However, the mixed treatment synergistically augmented the root biomass by 2.2-fold. SA was individually more effective than MJ in triggering changes in the DNA methylome profiles. The epigenetic cytosine methylation in the MJ + SA group differed from that of the individual treatments. The individual SA treatment led to severe DNA hypermethylation, which was modified with the MJ application. Moreover, MJ and/or SA-mediated upregulation of the histone deacetylase (HDA) gene also confirmed the epigenetic regulation at the histone modification level. The MJ elicitor showed greater effectiveness in influencing the transcription of the target genes than the SA one. The expression of the MAPK kinase and ethylene-responsive transcription factor (EREB) genes displayed a similar upward trend. Applying pepper seedlings with MJ and SA increased proline concentrations and catalase activities. The simultaneous application of MJ and SA supplements effectively stimulated secondary metabolism, indicated by increased soluble phenols and activity of the phenylalanine ammonia-lyase enzyme. This study presents novel comparative insights into the SA and MJ-mediated epigenetic modifications. These findings can be employed to design in vitro culture systems and implement large-scale projects.

体外培养植物对水杨酸(SA)和茉莉酸甲酯(MJ)诱导的表观遗传反应研究甚少。本研究在生理和分子水平上研究了辣椒幼苗在培养基中加入SA(0和10µM)和/或MJ(0和10µM)时的反应。单独施用MJ或SA可使根鲜重平均提高59.8%。混合处理可使根系生物量增加2.2倍。单独来看,SA在触发DNA甲基组谱变化方面比MJ更有效。MJ + SA组的表观遗传胞嘧啶甲基化与个体处理不同。单独的SA处理导致严重的DNA超甲基化,这种情况随着MJ的应用而得到改善。此外,MJ和/或sa介导的组蛋白去乙酰化酶(HDA)基因上调也证实了组蛋白修饰水平的表观遗传调控。MJ激发子比SA激发子对靶基因转录的影响更大。MAPK激酶和乙烯反应转录因子(EREB)基因的表达也呈现出类似的上升趋势。施用MJ和SA可提高辣椒幼苗脯氨酸浓度和过氧化氢酶活性。同时添加MJ和SA有效刺激了次生代谢,表现为可溶性酚和苯丙氨酸解氨酶活性的增加。本研究对SA和mj介导的表观遗传修饰提出了新的比较见解。这些发现可用于体外培养系统的设计和大规模项目的实施。
{"title":"Exploring effectiveness of salicylic acid and methyl jasmonate elicitors in influencing growth performance, epigenetic regulation, gene transcription, and secondary metabolism in pepper (Capsicum annuum): an in vitro biological assessment.","authors":"Zeinab Hasanvand, Alireza Iranbakhsh, Sara Saadatmand, Zahra Oraghi Ardebili","doi":"10.1007/s00709-025-02092-8","DOIUrl":"10.1007/s00709-025-02092-8","url":null,"abstract":"<p><p>Epigenetic responses of in vitro-cultured plants to elicitation with salicylic acid (SA) and methyl jasmonate (MJ) have been little explored. This study addresses how pepper seedlings respond to incorporating SA (0 and 10 µM) and/or MJ (0 and 10 µM) into the culture medium at physiological and molecular levels. The individual application of MJ or SA enhanced root fresh weight by an average of 59.8%. However, the mixed treatment synergistically augmented the root biomass by 2.2-fold. SA was individually more effective than MJ in triggering changes in the DNA methylome profiles. The epigenetic cytosine methylation in the MJ + SA group differed from that of the individual treatments. The individual SA treatment led to severe DNA hypermethylation, which was modified with the MJ application. Moreover, MJ and/or SA-mediated upregulation of the histone deacetylase (HDA) gene also confirmed the epigenetic regulation at the histone modification level. The MJ elicitor showed greater effectiveness in influencing the transcription of the target genes than the SA one. The expression of the MAPK kinase and ethylene-responsive transcription factor (EREB) genes displayed a similar upward trend. Applying pepper seedlings with MJ and SA increased proline concentrations and catalase activities. The simultaneous application of MJ and SA supplements effectively stimulated secondary metabolism, indicated by increased soluble phenols and activity of the phenylalanine ammonia-lyase enzyme. This study presents novel comparative insights into the SA and MJ-mediated epigenetic modifications. These findings can be employed to design in vitro culture systems and implement large-scale projects.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"105-117"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144584658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the digestive processes of symbiotic Chlorella sp. in non-endosymbiotic Paramecium species, Paramecium multimicronucleatum. 探讨共生小球藻对非内共生草履虫的消化过程,多微核草履虫。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-08-08 DOI: 10.1007/s00709-025-02097-3
Keiko Obayashi, Yuuki Kodama

Chlorella spp. live in mutual symbiosis with Paramecium bursaria. In the present study, we investigated the digestive processes of Chlorella variabilis isolated from P. bursaria ingested by P. multimicronucleatum, a species that does not have the ability to undergo endosymbiosis with algae. The digestion of algae within the digestive vacuole (DV) of P. multimicronucleatum began within 5 min, and complete digestion occurred within 12 h. The digested algae were retained in P. multimicronucleatum even after 72 h of incubation. Additionally, after 0.5 h, some single green alga appeared in the P. multimicronucleatum cytoplasm by budding from the DV membrane. Comparing the re-endosymbiosis process between P. bursaria and Chlorella sp., some algae exhibited temporary lysosomal enzyme resistance in P. multimicronucleatum DVs and appeared from the DVs by budding the DV membrane one cell at a time. However, the differentiation of the DV membrane surrounding a single green alga into a symbiosome membrane, called the perialgal vacuole membrane, localized beneath the P. bursaria cell cortex was not observed in P. multimicronucleatum. These findings provide insights into the digestive process of symbiotic algae in Paramecium species incapable of endosymbiosis and highlight the unique adaptations required for the establishment of endosymbiosis between P. bursaria and Chlorella spp.

小球藻与法氏草履虫共生。在本研究中,我们研究了从P. bursaria分离的变型小球藻被P. multimicronucleatum(一种不具有与藻类内共生能力的物种)摄入的消化过程。多核假单胞藻消化液泡(DV)内的藻类在5 min内开始消化,在12 h内完全消化,即使在孵育72 h后,被消化的藻类仍保留在多核假单胞藻中。0.5 h后,从DV膜出芽,在多核假单胞胞质中出现了单个绿藻。通过对法氏囊藻和小球藻的再内共生过程的比较,发现部分藻类在多核囊藻中表现出暂时的溶酶体酶抗性,并通过一次一个细胞出芽的方式从多核囊藻的DV膜中出现。然而,围绕单个绿藻的DV膜分化为位于法氏囊藻细胞皮层下的共生膜,称为藻周液泡膜,在多微核藻中没有观察到。这些发现揭示了共生藻类在不能内共生的草履虫物种中的消化过程,并强调了P. bursaria和小球藻之间建立内共生关系所需的独特适应。
{"title":"Exploring the digestive processes of symbiotic Chlorella sp. in non-endosymbiotic Paramecium species, Paramecium multimicronucleatum.","authors":"Keiko Obayashi, Yuuki Kodama","doi":"10.1007/s00709-025-02097-3","DOIUrl":"10.1007/s00709-025-02097-3","url":null,"abstract":"<p><p>Chlorella spp. live in mutual symbiosis with Paramecium bursaria. In the present study, we investigated the digestive processes of Chlorella variabilis isolated from P. bursaria ingested by P. multimicronucleatum, a species that does not have the ability to undergo endosymbiosis with algae. The digestion of algae within the digestive vacuole (DV) of P. multimicronucleatum began within 5 min, and complete digestion occurred within 12 h. The digested algae were retained in P. multimicronucleatum even after 72 h of incubation. Additionally, after 0.5 h, some single green alga appeared in the P. multimicronucleatum cytoplasm by budding from the DV membrane. Comparing the re-endosymbiosis process between P. bursaria and Chlorella sp., some algae exhibited temporary lysosomal enzyme resistance in P. multimicronucleatum DVs and appeared from the DVs by budding the DV membrane one cell at a time. However, the differentiation of the DV membrane surrounding a single green alga into a symbiosome membrane, called the perialgal vacuole membrane, localized beneath the P. bursaria cell cortex was not observed in P. multimicronucleatum. These findings provide insights into the digestive process of symbiotic algae in Paramecium species incapable of endosymbiosis and highlight the unique adaptations required for the establishment of endosymbiosis between P. bursaria and Chlorella spp.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"217-229"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144800045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Humic acid induced astaxanthin accumulation by changing GABA, polyamines, and H2O2 levels in Haematococcus lacustris at the stationary growth phase. 腐植酸通过改变湖红球菌固定生长期GABA、多胺和H2O2水平诱导虾青素积累。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-08-27 DOI: 10.1007/s00709-025-02105-6
Halimeh Hassanpour

Humic acid (HA) is a redox-active organic compound that can regulate cell metabolism to produce antioxidant metabolites against oxidative stress. Haematococcus lacustris is a green microalga and is found to be a rich source of astaxanthin. In this research, the impact of HA was studied on the growth mechanisms and production of antioxidant metabolites through dynamic responses of pigments, proteins, carbohydrates, secondary messengers of H2O2 and Ca2+, gamma-aminobutyric acid (GABA), and enzyme activities in H. lacustris. Results revealed that HA at 80 µM concentration is a suitable treatment to induce astaxanthin production and cell growth. Cell numbers increased significantly under HA80, and the trend was to enter the red aplanospore phase at the stationary growth phase. High HA concentration (120 µM) increased astaxanthin content but considerably reduced cell number and size. HA80 enhanced astaxanthin (5.39 mg L-1), flavonoid (15.64 mg g-1 DW), and phenolic (55.64 mg g-1 DW) contents after 9 days of induction time, which was accompanied by a significant reduction in the chlorophyll pigments, proteins, and carbohydrate contents. The increase in total phenolic content was associated with enhanced phenylalanine ammonia-lyase activity. H2O2 accumulation decreased by HA80 at the late stationary growth phase. Putrescine and spermidine contents were promoted under HA80, while gamma-aminobutyric acid (GABA) and Ca2+ contents were reduced from the logarithmic phase to the early stationary growth phase. Succinate dehydrogenase (SDH) activity was promoted in the TCA cycle, and the GABA shunt was activated to regulate the ROS level. Findings indicate that the impact of HA on cell growth and astaxanthin production is associated with HA concentration and cell growth phase. HA can regulate ROS levels at the stationary growth phase by inducing polyamine metabolism and an antioxidant defense system.

腐植酸(HA)是一种具有氧化还原活性的有机化合物,可以调节细胞代谢,产生抗氧化代谢产物,对抗氧化应激。湖红球菌是一种绿色微藻,被发现是虾青素的丰富来源。本研究通过色素、蛋白质、碳水化合物、H2O2和Ca2+次生信使、γ -氨基丁酸(GABA)和酶活性的动态响应,研究了HA对湖泊水浒生长机制和抗氧化代谢物产生的影响。结果表明,80µM浓度的透明质酸是诱导虾青素生成和细胞生长的适宜处理。HA80处理下细胞数量显著增加,并有在静止生长期进入红色平生孢子期的趋势。高HA浓度(120µM)增加虾青素含量,但显著减少细胞数量和大小。诱导9 d后,HA80提高了虾青素(5.39 mg L-1)、类黄酮(15.64 mg g-1 DW)和酚类物质(55.64 mg g-1 DW)含量,显著降低了叶绿素色素、蛋白质和碳水化合物含量。总酚含量的增加与苯丙氨酸解氨酶活性的增强有关。在稳定生长后期,H2O2积累量因HA80而减少。HA80处理下,腐胺和亚精胺含量升高,γ -氨基丁酸(GABA)和Ca2+含量从对数期到平稳生长早期均有所降低。TCA循环可促进琥珀酸脱氢酶(SDH)活性,激活GABA分流,调节ROS水平。结果表明,HA对细胞生长和虾青素产生的影响与HA浓度和细胞生长阶段有关。透明质酸可以通过诱导多胺代谢和抗氧化防御系统调节固定生长期的ROS水平。
{"title":"Humic acid induced astaxanthin accumulation by changing GABA, polyamines, and H<sub>2</sub>O<sub>2</sub> levels in Haematococcus lacustris at the stationary growth phase.","authors":"Halimeh Hassanpour","doi":"10.1007/s00709-025-02105-6","DOIUrl":"10.1007/s00709-025-02105-6","url":null,"abstract":"<p><p>Humic acid (HA) is a redox-active organic compound that can regulate cell metabolism to produce antioxidant metabolites against oxidative stress. Haematococcus lacustris is a green microalga and is found to be a rich source of astaxanthin. In this research, the impact of HA was studied on the growth mechanisms and production of antioxidant metabolites through dynamic responses of pigments, proteins, carbohydrates, secondary messengers of H<sub>2</sub>O<sub>2</sub> and Ca<sup>2+</sup>, gamma-aminobutyric acid (GABA), and enzyme activities in H. lacustris. Results revealed that HA at 80 µM concentration is a suitable treatment to induce astaxanthin production and cell growth. Cell numbers increased significantly under HA80, and the trend was to enter the red aplanospore phase at the stationary growth phase. High HA concentration (120 µM) increased astaxanthin content but considerably reduced cell number and size. HA80 enhanced astaxanthin (5.39 mg L<sup>-1</sup>), flavonoid (15.64 mg g<sup>-1</sup> DW), and phenolic (55.64 mg g<sup>-1</sup> DW) contents after 9 days of induction time, which was accompanied by a significant reduction in the chlorophyll pigments, proteins, and carbohydrate contents. The increase in total phenolic content was associated with enhanced phenylalanine ammonia-lyase activity. H<sub>2</sub>O<sub>2</sub> accumulation decreased by HA80 at the late stationary growth phase. Putrescine and spermidine contents were promoted under HA80, while gamma-aminobutyric acid (GABA) and Ca<sup>2+</sup> contents were reduced from the logarithmic phase to the early stationary growth phase. Succinate dehydrogenase (SDH) activity was promoted in the TCA cycle, and the GABA shunt was activated to regulate the ROS level. Findings indicate that the impact of HA on cell growth and astaxanthin production is associated with HA concentration and cell growth phase. HA can regulate ROS levels at the stationary growth phase by inducing polyamine metabolism and an antioxidant defense system.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"281-294"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144966310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A new model for the global patterning of spores and pollen grains. 孢子和花粉粒全球模式的新模型。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-08-14 DOI: 10.1007/s00709-025-02103-8
Kun L Yang, Zhu L Yang, Yang Luo, Jia Y Lin, Hong Wang, Pan Meng Wang

Spores of fungi and seedless plants, and pollen grains of seed plants, are usually characterized by variable global patterns on the surface. However, the mechanisms responsible for the development of these patterns have not been fully understood. We hypothesize that the global pattern of a spore or pollen grain is induced by the stresses resulted from the mismatch between a faster-growing outer part and a slower-growing inner part within the grain and tried to verify the hypothesis by simplifying the developing spores and pollen grains as stressed core/shell structures, simulating the buckling patterns of such structures with different shapes and shell thicknesses through finite element method, and comparing the simulated models with natural spores and pollen grains observed under microscopes. Totally, 313 models were simulated and 77 natural instances were studied. The simulated models reproduced various global patterns generally corresponding to the natural instances from a mechanical point of view. Our findings suggest that stress-driven development potentially contributes to the global patterning of spores and pollen grains, with the shape and thickness of the faster-growing outer part at the beginning of the differential growth determining the pattern types, providing new insights into the development and evolution of the global patterns on spores and pollen grains.

真菌和无籽植物的孢子,以及种子植物的花粉粒,其表面通常具有不同的全局模式。然而,负责开发这些模式的机制还没有被完全理解。我们假设孢子或花粉粒的全局格局是由颗粒内生长较快的外层与生长较慢的内层不匹配所产生的应力引起的,并试图将发育中的孢子和花粉粒简化为受应力的核/壳结构,通过有限元方法模拟不同形状和壳厚的核/壳结构的屈曲模式来验证这一假设。并将模拟模型与显微镜下观察到的天然孢子和花粉粒进行比较。共模拟了313个模式,研究了77个自然实例。从力学的角度来看,模拟模型再现了与自然实例大致对应的各种全球模式。我们的研究结果表明,应力驱动的发育可能有助于孢子和花粉粒的全局模式,而在差异生长开始时生长较快的外部部分的形状和厚度决定了模式类型,为孢子和花粉粒的全局模式的发育和演化提供了新的见解。
{"title":"A new model for the global patterning of spores and pollen grains.","authors":"Kun L Yang, Zhu L Yang, Yang Luo, Jia Y Lin, Hong Wang, Pan Meng Wang","doi":"10.1007/s00709-025-02103-8","DOIUrl":"10.1007/s00709-025-02103-8","url":null,"abstract":"<p><p>Spores of fungi and seedless plants, and pollen grains of seed plants, are usually characterized by variable global patterns on the surface. However, the mechanisms responsible for the development of these patterns have not been fully understood. We hypothesize that the global pattern of a spore or pollen grain is induced by the stresses resulted from the mismatch between a faster-growing outer part and a slower-growing inner part within the grain and tried to verify the hypothesis by simplifying the developing spores and pollen grains as stressed core/shell structures, simulating the buckling patterns of such structures with different shapes and shell thicknesses through finite element method, and comparing the simulated models with natural spores and pollen grains observed under microscopes. Totally, 313 models were simulated and 77 natural instances were studied. The simulated models reproduced various global patterns generally corresponding to the natural instances from a mechanical point of view. Our findings suggest that stress-driven development potentially contributes to the global patterning of spores and pollen grains, with the shape and thickness of the faster-growing outer part at the beginning of the differential growth determining the pattern types, providing new insights into the development and evolution of the global patterns on spores and pollen grains.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"247-267"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144856111","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Formation of the proventriculus in the foregut during metamorphosis of the honey bee Apis mellifera Linnaeus, 1758 (Hymenoptera: Apidae). 1758年蜜蜂前肠前室的形成(膜翅目:蜂科)。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-08-07 DOI: 10.1007/s00709-025-02099-1
Daniela de Castro Guedes, Werônica Célia Starlino Dias, Luanda Medeiros-Santana, Jamile Fernanda Silva Cossolin, Bárbara Monteiro de Castro E Castro, José Cola Zanuncio, José Eduardo Serrão

In adult bees, the foregut-midgut transition is marked by the proventriculus, which consists of an anterior muscular bulb extending into the crop lumen and a posterior stomodeal valve in the midgut lumen. In larvae, the proventricular bulb is absent and forms only during metamorphosis, a process that remains poorly understood. This study aimed to describe the cellular events involved in the formation and differentiation of the honey bee Apis mellifera proventriculus during metamorphosis. The foregut-midgut transition of larvae, pupae, and newly emerged adults was analyzed using histology and immunohistochemistry to detect apoptosis, autophagy, cell proliferation, and differentiation. In larvae, the proventriculus consists solely of the stomodeal valve, which disappears in prepupae as the foregut-midgut passage closes. The proventricular bulb precursor emerges in prepupae as a thick epithelium, differentiating alongside the muscle layer until the brown-eyed pupal stage. The stomodeal valve forms in brown-eyed pupae through epithelial invagination towards the foregut lumen and everts in the end of black-eyed pupae stage, projecting into the midgut. Apoptosis was frequent in prepupae but rare in later stages. Autophagy occurred in white- and brown-eyed pupae but was absent in black-eyed pupae. Cell proliferation was observed in prepupae, white- and brown-eyed pupae but not in pink-eyed pupae, where differentiation predominated. No cellular events were detected in black-eyed pupae, marking the end of proventriculus remodeling. The morphogenesis of the A. mellifera proventriculus involves extensive tissue remodeling, with apoptosis, proliferation, and differentiation driving its transformation during metamorphosis.

在成年蜜蜂中,前肠到中肠的转变以前室为标志,前室由一个伸入嗉囊腔的前肌球和一个位于中肠腔的后气孔阀组成。在幼虫中,前脑室球没有,只在变态过程中形成,这一过程仍然知之甚少。本研究旨在描述蜜蜂在变态过程中形成和分化的细胞事件。采用组织学和免疫组织化学方法分析了幼虫、蛹和新生成虫的前肠-中肠过渡过程,检测了细胞凋亡、自噬、细胞增殖和分化。在幼虫中,前心室仅由气孔阀组成,当前肠-中肠通道关闭时,气孔阀在预蛹中消失。前脑室球前体在蛹期出现为厚上皮,沿肌层分化,直至褐眼蛹期。在褐眼蛹时,气孔瓣通过上皮内陷向前肠腔形成,在黑眼蛹期末期,气孔瓣向中肠突出。细胞凋亡在蛹前多见,后期少见。自噬在白眼和褐眼蛹中发生,而在黑眼蛹中不发生。白眼蛹和褐眼蛹细胞增殖明显,而粉眼蛹细胞增殖不明显。在黑眼蛹中未检测到细胞事件,标志着前脑室重构的结束。蜜蜂前室的形态发生涉及广泛的组织重塑,在变态过程中凋亡、增殖和分化驱动其转变。
{"title":"Formation of the proventriculus in the foregut during metamorphosis of the honey bee Apis mellifera Linnaeus, 1758 (Hymenoptera: Apidae).","authors":"Daniela de Castro Guedes, Werônica Célia Starlino Dias, Luanda Medeiros-Santana, Jamile Fernanda Silva Cossolin, Bárbara Monteiro de Castro E Castro, José Cola Zanuncio, José Eduardo Serrão","doi":"10.1007/s00709-025-02099-1","DOIUrl":"10.1007/s00709-025-02099-1","url":null,"abstract":"<p><p>In adult bees, the foregut-midgut transition is marked by the proventriculus, which consists of an anterior muscular bulb extending into the crop lumen and a posterior stomodeal valve in the midgut lumen. In larvae, the proventricular bulb is absent and forms only during metamorphosis, a process that remains poorly understood. This study aimed to describe the cellular events involved in the formation and differentiation of the honey bee Apis mellifera proventriculus during metamorphosis. The foregut-midgut transition of larvae, pupae, and newly emerged adults was analyzed using histology and immunohistochemistry to detect apoptosis, autophagy, cell proliferation, and differentiation. In larvae, the proventriculus consists solely of the stomodeal valve, which disappears in prepupae as the foregut-midgut passage closes. The proventricular bulb precursor emerges in prepupae as a thick epithelium, differentiating alongside the muscle layer until the brown-eyed pupal stage. The stomodeal valve forms in brown-eyed pupae through epithelial invagination towards the foregut lumen and everts in the end of black-eyed pupae stage, projecting into the midgut. Apoptosis was frequent in prepupae but rare in later stages. Autophagy occurred in white- and brown-eyed pupae but was absent in black-eyed pupae. Cell proliferation was observed in prepupae, white- and brown-eyed pupae but not in pink-eyed pupae, where differentiation predominated. No cellular events were detected in black-eyed pupae, marking the end of proventriculus remodeling. The morphogenesis of the A. mellifera proventriculus involves extensive tissue remodeling, with apoptosis, proliferation, and differentiation driving its transformation during metamorphosis.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"203-215"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144795200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CircDCAF6 regulates the miR-196a/IGF2BP3 axis to promote proliferation and inhibit apoptosis in bovine myoblasts. CircDCAF6调节miR-196a/IGF2BP3轴促进牛成肌细胞增殖和抑制细胞凋亡。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-07-10 DOI: 10.1007/s00709-025-02091-9
Liang Chengcheng, Zhou Yanduo, Sayed Haidar Abbas Raza, Ahmed M Basri, Mohammed F Abuzinadah, Ahmed M Abdulfattah, Rawabi Zahed, Reem Nabil Hassan, Abdelghafar M Abu-Elsaoud, Linsen Zan

This study investigates the role of circDCAF6 in regulating the proliferation and apoptosis of bovine myoblasts, focusing on its interaction with bta-miR-196a and IGF2BP3. Using online prediction tools like TargetScan and miRanda, we identified circDCAF6 as a target for bta-miR-196a, bta-miR-196b, and bta-miR-219-3p. Experimental results showed that interference with circDCAF6 significantly increased the expression of bta-miR-196a and miR-196b, while miR-219-3p levels remained unchanged. Following these findings, we confirmed the direct targeting relationship between circDCAF6 and bta-miR-196a using a dual luciferase reporter system and RNA pull-down experiments. Subsequent analysis revealed that circDCAF6 co-transmutation with bta-miR-196a countered the inhibitory effect of the bta-miR-196a mimic on cell proliferation marker genes (CCNA1, CCNA2, MCM6) and restored S-phase cell proportions. Additionally, circDCAF6 diminished the pro-apoptotic effects of bta-miR-196a by reducing apoptosis marker gene expression (Caspase3, Caspase6) and the proportion of early apoptotic cells. We also identified IGF2BP3 as a target of bta-miR-196a, with verification through dual luciferase assays, RT-qPCR, and Western blots. Further research indicated that interfering with IGF2BP3 significantly reduced cell proliferation and increased apoptosis, characterized by lower expression of proliferation markers and higher levels of apoptosis markers. Co-transfer experiments of siRNA for circDCAF6 and IGF2BP3 showed that circDCAF6 could mitigate the inhibitory effects caused by IGF2BP3 interference. In summary, this study highlights the critical role of circDCAF6 in bovine myoblast proliferation and apoptosis via the bta-miR-196a/IGF2BP3 axis, offering insight into muscle development and disease mechanisms.

本研究探讨了circDCAF6在调节牛成肌细胞增殖和凋亡中的作用,重点研究了其与bta-miR-196a和IGF2BP3的相互作用。利用TargetScan和miRanda等在线预测工具,我们确定了circDCAF6是bta-miR-196a、bta-miR-196b和bta-miR-219-3p的靶标。实验结果显示,干扰circDCAF6显著增加了bta-miR-196a和miR-196b的表达,而miR-219-3p的表达水平保持不变。根据这些发现,我们使用双荧光素酶报告系统和RNA下拉实验证实了circDCAF6和bta-miR-196a之间的直接靶向关系。随后的分析显示,circDCAF6与bta-miR-196a共突变抵消了bta-miR-196a模拟物对细胞增殖标记基因(CCNA1、CCNA2、MCM6)的抑制作用,恢复了s期细胞比例。此外,circDCAF6通过降低凋亡标记基因(Caspase3、Caspase6)的表达和早期凋亡细胞的比例,降低了bta-miR-196a的促凋亡作用。我们还通过双荧光素酶测定、RT-qPCR和Western blot验证了IGF2BP3是bta-miR-196a的靶标。进一步研究表明,干扰IGF2BP3可显著降低细胞增殖,增加细胞凋亡,表现为增殖标志物表达降低,凋亡标志物表达升高。siRNA对circDCAF6和IGF2BP3的共转移实验表明,circDCAF6可以减轻IGF2BP3干扰引起的抑制作用。总之,本研究强调了circDCAF6通过bta-miR-196a/IGF2BP3轴在牛成肌细胞增殖和凋亡中的关键作用,为肌肉发育和疾病机制提供了见解。
{"title":"CircDCAF6 regulates the miR-196a/IGF2BP3 axis to promote proliferation and inhibit apoptosis in bovine myoblasts.","authors":"Liang Chengcheng, Zhou Yanduo, Sayed Haidar Abbas Raza, Ahmed M Basri, Mohammed F Abuzinadah, Ahmed M Abdulfattah, Rawabi Zahed, Reem Nabil Hassan, Abdelghafar M Abu-Elsaoud, Linsen Zan","doi":"10.1007/s00709-025-02091-9","DOIUrl":"10.1007/s00709-025-02091-9","url":null,"abstract":"<p><p>This study investigates the role of circDCAF6 in regulating the proliferation and apoptosis of bovine myoblasts, focusing on its interaction with bta-miR-196a and IGF2BP3. Using online prediction tools like TargetScan and miRanda, we identified circDCAF6 as a target for bta-miR-196a, bta-miR-196b, and bta-miR-219-3p. Experimental results showed that interference with circDCAF6 significantly increased the expression of bta-miR-196a and miR-196b, while miR-219-3p levels remained unchanged. Following these findings, we confirmed the direct targeting relationship between circDCAF6 and bta-miR-196a using a dual luciferase reporter system and RNA pull-down experiments. Subsequent analysis revealed that circDCAF6 co-transmutation with bta-miR-196a countered the inhibitory effect of the bta-miR-196a mimic on cell proliferation marker genes (CCNA1, CCNA2, MCM6) and restored S-phase cell proportions. Additionally, circDCAF6 diminished the pro-apoptotic effects of bta-miR-196a by reducing apoptosis marker gene expression (Caspase3, Caspase6) and the proportion of early apoptotic cells. We also identified IGF2BP3 as a target of bta-miR-196a, with verification through dual luciferase assays, RT-qPCR, and Western blots. Further research indicated that interfering with IGF2BP3 significantly reduced cell proliferation and increased apoptosis, characterized by lower expression of proliferation markers and higher levels of apoptosis markers. Co-transfer experiments of siRNA for circDCAF6 and IGF2BP3 showed that circDCAF6 could mitigate the inhibitory effects caused by IGF2BP3 interference. In summary, this study highlights the critical role of circDCAF6 in bovine myoblast proliferation and apoptosis via the bta-miR-196a/IGF2BP3 axis, offering insight into muscle development and disease mechanisms.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"135-145"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144601297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mitigating heavy metals toxicity in sorghum using arbuscular mycorrhizal fungi: enhancing photosynthesis and antioxidant defense. 利用丛枝菌根真菌减轻高粱重金属毒性:增强光合作用和抗氧化防御。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-07-15 DOI: 10.1007/s00709-025-02095-5
Anass Kchikich, Belkassem El Amraoui, Nada Nhhala, Azzouz Krid, Amr Kchikich, Ayoub Kounnoun, Loubna Ouahmane, Mohamed Nhiri, Naima Nhiri

This study aims to understand the effect of inoculation by arbuscular mycorrhizal fungi Glomus intraradices (AMF) on the regulation of carbon and nitrogen sensibility and the antioxidant system in Sorghum bicolor (L.) Moench plants under lead (Pb) stress (750 ppm). Plant morphology, accumulation of lead, IAA, H2O2, MDA, and chlorophyll contents were assayed. The enzymes involved in the carbon/nitrogen interaction as well as the antioxidant enzymes were evaluated via a two-factor pot experiment (inoculation by AMF and stress by Pb). AMFs attenuate Pb damage by upregulating the antioxidant system: superoxide dismutase (SOD), glutathione peroxidase (GPx), glutathione s-transferase (GST), and glutathione reductase (GR). Similarly, the activity of each of the key enzymes responsible for the interaction of nitrogen and carbon metabolic pathways, glutamine synthetase (GS), glutamate dehydrogenase (GDH), phosphoenolpyruvate carboxylase (PEPC), and aspartate aminotransferase (AAT), were measured and showed a significant increase in mycorrhizal plants. AMF inoculation decreased H2O2 and MDA content and increased the indole acetic acid (IAA) content, which indicates that mycorrhizal inoculation has a great ability to attenuate Pb resistance. Pb stress also negatively affected plant growth by disrupting carbon and nitrogen enzymatic pathways as well as the antioxidant system. Therefore, inoculation with AMFs reduced Pb fullness by decreasing its accumulation in sorghum leaves and roots and regulating the enzymatic system involved in plant growth.

本研究旨在了解丛枝菌根真菌Glomus intraradices (AMF)接种对高粱碳氮敏感性及抗氧化系统的调控作用。Moench植物在铅(Pb)胁迫下(750 ppm)。测定植株形态、铅积累、IAA、H2O2、MDA和叶绿素含量。通过双因素盆栽试验(AMF接种和Pb胁迫)对参与碳/氮相互作用的酶和抗氧化酶进行了评价。AMFs通过上调抗氧化系统:超氧化物歧化酶(SOD)、谷胱甘肽过氧化物酶(GPx)、谷胱甘肽s-转移酶(GST)和谷胱甘肽还原酶(GR)来减轻铅损伤。同样,对菌根植物中负责氮碳代谢途径相互作用的关键酶——谷氨酰胺合成酶(GS)、谷氨酸脱氢酶(GDH)、磷酸烯醇丙酮酸羧化酶(PEPC)和天冬氨酸转氨酶(AAT)的活性进行了测定,结果显示菌根植物中谷氨酰胺合成酶(GS)、谷氨酸脱氢酶(GDH)和谷草转氨酶(AAT)的活性均显著升高。接种AMF降低了H2O2和MDA含量,增加了吲哚乙酸(IAA)含量,表明接种菌根具有较强的抗铅能力。铅胁迫还通过破坏碳、氮酶途径和抗氧化系统对植物生长产生负面影响。由此可见,接种AMFs通过减少其在高粱叶片和根系中的积累以及调节植株生长的酶系统来降低Pb丰满度。
{"title":"Mitigating heavy metals toxicity in sorghum using arbuscular mycorrhizal fungi: enhancing photosynthesis and antioxidant defense.","authors":"Anass Kchikich, Belkassem El Amraoui, Nada Nhhala, Azzouz Krid, Amr Kchikich, Ayoub Kounnoun, Loubna Ouahmane, Mohamed Nhiri, Naima Nhiri","doi":"10.1007/s00709-025-02095-5","DOIUrl":"10.1007/s00709-025-02095-5","url":null,"abstract":"<p><p>This study aims to understand the effect of inoculation by arbuscular mycorrhizal fungi Glomus intraradices (AMF) on the regulation of carbon and nitrogen sensibility and the antioxidant system in Sorghum bicolor (L.) Moench plants under lead (Pb) stress (750 ppm). Plant morphology, accumulation of lead, IAA, H<sub>2</sub>O<sub>2</sub>, MDA, and chlorophyll contents were assayed. The enzymes involved in the carbon/nitrogen interaction as well as the antioxidant enzymes were evaluated via a two-factor pot experiment (inoculation by AMF and stress by Pb). AMFs attenuate Pb damage by upregulating the antioxidant system: superoxide dismutase (SOD), glutathione peroxidase (GPx), glutathione s-transferase (GST), and glutathione reductase (GR). Similarly, the activity of each of the key enzymes responsible for the interaction of nitrogen and carbon metabolic pathways, glutamine synthetase (GS), glutamate dehydrogenase (GDH), phosphoenolpyruvate carboxylase (PEPC), and aspartate aminotransferase (AAT), were measured and showed a significant increase in mycorrhizal plants. AMF inoculation decreased H<sub>2</sub>O<sub>2</sub> and MDA content and increased the indole acetic acid (IAA) content, which indicates that mycorrhizal inoculation has a great ability to attenuate Pb resistance. Pb stress also negatively affected plant growth by disrupting carbon and nitrogen enzymatic pathways as well as the antioxidant system. Therefore, inoculation with AMFs reduced Pb fullness by decreasing its accumulation in sorghum leaves and roots and regulating the enzymatic system involved in plant growth.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"147-159"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144637799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sand-trapping mechanism in psammophyte Ifloga spicata (Asteraceae). 沙生植物星科刺果的捕沙机制。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-09-01 DOI: 10.1007/s00709-025-02107-4
Ilana Shtein

Sands are a harsh habitat with limited water and nutrients, and danger of burial or mechanical injury by moving particles. Sand entrapping plants (psammophytes) actively fix sand on their surfaces, which presumably offers adaptive benefits, such as mechanical protection and camouflage. This short article deals with the structural-functional aspects of sand-trapping in the annual psammophyte Ifloga spicata (Asteraceae). Ifloga spicata outer surfaces are entirely covered with a dense coating of particles, mainly sand and dust. The leaves are needle-shaped and curled with the adaxial surface hidden inside. The entire outer epidermis is secretory, comprised of large cells with thick pectinaceous cell walls and upper cell wall junctions with numerous wall creases. Ruthenium red staining of fresh hand sections of the leaf demonstrated that the outer epidermal cells produce a pectinaceous substance, which upon wetting ruptures outside the cell, resembling pectin "rays" in the Arabidopsis seed coat. TEM imaging showed vesicles arriving at the plasmalemma, fusing with it and the secretory product accumulated in periplasmic spaces inside the cell wall. Ifloga spicata and other sand entrapping plants live in nutrient poor habitats. Foliar particle capture could have an additional benefit of phosphorus accumulation from leaf deposited dust particles, as known in several Mediterranean origin plants.

沙子是一个恶劣的栖息地,水和养分有限,有被掩埋或被移动的颗粒机械伤害的危险。吸沙植物(沙生植物)主动将沙子固定在它们的表面,这可能提供了适应性的好处,比如机械保护和伪装。本文研究了一年生沙生植物穗状Ifloga spicata (Asteraceae)的结构功能。丝瓜外表面完全覆盖着一层致密的颗粒,主要是沙子和灰尘。叶子呈针状,卷曲,正面隐藏在里面。整个外表皮是分泌的,由大细胞组成,具有厚的果胶细胞壁和上细胞壁连接,有许多细胞壁皱褶。新鲜叶片的钌红染色表明,外表皮细胞产生一种果胶物质,这种物质在细胞外被浸湿后破裂,类似于拟南芥种皮上的果胶“射线”。透射电镜显示囊泡到达质膜并与质膜融合,分泌产物积聚在细胞壁内的质周间隙中。穗状Ifloga spicata和其他吸沙植物生活在营养贫乏的栖息地。叶颗粒捕获可以从叶片沉积的尘埃颗粒中积累磷的额外好处,正如几种地中海植物所知的那样。
{"title":"Sand-trapping mechanism in psammophyte Ifloga spicata (Asteraceae).","authors":"Ilana Shtein","doi":"10.1007/s00709-025-02107-4","DOIUrl":"10.1007/s00709-025-02107-4","url":null,"abstract":"<p><p>Sands are a harsh habitat with limited water and nutrients, and danger of burial or mechanical injury by moving particles. Sand entrapping plants (psammophytes) actively fix sand on their surfaces, which presumably offers adaptive benefits, such as mechanical protection and camouflage. This short article deals with the structural-functional aspects of sand-trapping in the annual psammophyte Ifloga spicata (Asteraceae). Ifloga spicata outer surfaces are entirely covered with a dense coating of particles, mainly sand and dust. The leaves are needle-shaped and curled with the adaxial surface hidden inside. The entire outer epidermis is secretory, comprised of large cells with thick pectinaceous cell walls and upper cell wall junctions with numerous wall creases. Ruthenium red staining of fresh hand sections of the leaf demonstrated that the outer epidermal cells produce a pectinaceous substance, which upon wetting ruptures outside the cell, resembling pectin \"rays\" in the Arabidopsis seed coat. TEM imaging showed vesicles arriving at the plasmalemma, fusing with it and the secretory product accumulated in periplasmic spaces inside the cell wall. Ifloga spicata and other sand entrapping plants live in nutrient poor habitats. Foliar particle capture could have an additional benefit of phosphorus accumulation from leaf deposited dust particles, as known in several Mediterranean origin plants.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"319-325"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144966341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expression profiles and their influence on intramuscular fat in yaks at two developmental stages role of RNA sequencing. RNA测序对牦牛两个发育阶段肌内脂肪表达谱的影响
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-08-02 DOI: 10.1007/s00709-025-02098-2
Zhanhong Gao, Fengshuo Zhang, Suad Hamdan Almasoudi, Majid Al-Zahrani, Ahmed M Basri, Raafat T M Makhlof, Zhang Yu, Linsheng Gui

MicroRNAs (miRNAs) are a class of non-coding RNAs (ncRNAs) that negatively regulate gene expression at the post-transcriptional level. Intramuscular fat (IMF) deposition in livestock is crucial for meat quality, affecting the meat's taste and tenderness. However, there has been little research on the miRNA transcriptome of yak in relation to intramuscular fat deposition in yak. In this study, RNA sequencing in the longissimus dorsi (LD) muscle samples was conducted to uncover the miRNAs expression profiles of yak at two ages: 3 months (calf) and 3 years (adult). A total of 1030 known miRNAs and 279 novel miRNAs were identified, of which 40 differentially expressed miRNAs (DE-miRNAs) were screened. We then obtained target genes of 40 DE-miRNAs and established enrichment analyses using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes Genomes (KEGG). We found target genes were involved in four significantly enriched pathways, and the MAPK signaling pathways were the key pathways. Moreover, we constructed a miRNA-mRNA regulatory network to visualize the functions of miRNAs related to IMF deposition in the yak. miR-122, miR-375, and miR-378 may play a key role in IMF deposition in the yak, and RORC, STAT3, ACACA, FTO, and FOXO1 were the core target genes. We randomly selected six miRNAs from DE-miRNAs to validate the sequencing results using RT-qPCR. This study revealed miRNAs expression profiles in yak IMF development between calf and adult and provided a miRNA database for further studies on the molecular mechanisms of IMF deposition in the yak.

MicroRNAs (miRNAs)是一类在转录后水平负调控基因表达的非编码rna (ncRNAs)。家畜肌内脂肪(IMF)沉积对肉质至关重要,影响肉的口感和嫩度。然而,关于牦牛肌内脂肪沉积与miRNA转录组的研究很少。本研究通过对牦牛背最长肌(LD)肌肉样本进行RNA测序,揭示了牦牛在3个月(小牛)和3岁(成年)两个年龄阶段的miRNAs表达谱。共鉴定出1030个已知mirna和279个新mirna,其中筛选出40个差异表达mirna (de - mirna)。然后,我们获得了40个de - mirna的靶基因,并使用基因本体(GO)和京都基因基因组百科全书(KEGG)建立了富集分析。我们发现靶基因参与了四条显著富集的通路,其中MAPK信号通路是关键通路。此外,我们构建了miRNA-mRNA调控网络,可视化了牦牛体内与IMF沉积相关的mirna的功能。miR-122、miR-375和miR-378可能在牦牛体内的IMF沉积中起关键作用,其中RORC、STAT3、ACACA、FTO和fox01是核心靶基因。我们从DE-miRNAs中随机选择6个miRNAs,使用RT-qPCR验证测序结果。本研究揭示了犊牛和成年牦牛IMF发育过程中miRNA的表达谱,为进一步研究牦牛IMF沉积的分子机制提供了miRNA数据库。
{"title":"Expression profiles and their influence on intramuscular fat in yaks at two developmental stages role of RNA sequencing.","authors":"Zhanhong Gao, Fengshuo Zhang, Suad Hamdan Almasoudi, Majid Al-Zahrani, Ahmed M Basri, Raafat T M Makhlof, Zhang Yu, Linsheng Gui","doi":"10.1007/s00709-025-02098-2","DOIUrl":"10.1007/s00709-025-02098-2","url":null,"abstract":"<p><p>MicroRNAs (miRNAs) are a class of non-coding RNAs (ncRNAs) that negatively regulate gene expression at the post-transcriptional level. Intramuscular fat (IMF) deposition in livestock is crucial for meat quality, affecting the meat's taste and tenderness. However, there has been little research on the miRNA transcriptome of yak in relation to intramuscular fat deposition in yak. In this study, RNA sequencing in the longissimus dorsi (LD) muscle samples was conducted to uncover the miRNAs expression profiles of yak at two ages: 3 months (calf) and 3 years (adult). A total of 1030 known miRNAs and 279 novel miRNAs were identified, of which 40 differentially expressed miRNAs (DE-miRNAs) were screened. We then obtained target genes of 40 DE-miRNAs and established enrichment analyses using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes Genomes (KEGG). We found target genes were involved in four significantly enriched pathways, and the MAPK signaling pathways were the key pathways. Moreover, we constructed a miRNA-mRNA regulatory network to visualize the functions of miRNAs related to IMF deposition in the yak. miR-122, miR-375, and miR-378 may play a key role in IMF deposition in the yak, and RORC, STAT3, ACACA, FTO, and FOXO1 were the core target genes. We randomly selected six miRNAs from DE-miRNAs to validate the sequencing results using RT-qPCR. This study revealed miRNAs expression profiles in yak IMF development between calf and adult and provided a miRNA database for further studies on the molecular mechanisms of IMF deposition in the yak.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"181-192"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144768956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of tobacco chloroplast vector with novel insertion sites for dengue virus (DENV) antigens. 含登革病毒抗原新插入位点烟草叶绿体载体的研制。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-07-17 DOI: 10.1007/s00709-025-02087-5
Hailah M Almohaimeed, Rasha Assiri, Waheeb S Aggad, Meshal M ALsharafa, Sara F Faloudah, Ahmed M Abdulfattah, Fayez Alsulaimani, Ahmed M Basri

Dengue virus (DENV) is a substantial global health threat with no specific antiviral treatment available. The development of effective vaccines is crucial to combat DENV infections. Plant-based expression systems, such as tobacco chloroplasts, have emerged as promising platforms for the production of DENV antigens. In this research article, we describe the construction of a tobacco chloroplast vector with novel insertion sites for DENV-1 protein III. Our present study successfully demonstrated the production of the envelope protein structural domain III (EDIII) dengue virus antigen in tobacco chloroplasts. We obtained transformed tobacco lines that show the expression of EDIII dengue antigen and were confirmed through Southern blotting analysis. Furthermore, the expression of EDIII antigen was further confirmed via immunoblotting and quantified. These findings suggest that tobacco chloroplast engineering holds promise as a method for future manufacture of an oral dengue boost vaccine that is safe, affordable, and effective, contributing to the global management and control of this particular dengue infection.

登革热病毒(DENV)是一个重大的全球健康威胁,目前尚无专门的抗病毒治疗方法。研制有效疫苗对防治DENV感染至关重要。基于植物的表达系统,如烟草叶绿体,已经成为生产DENV抗原的有希望的平台。在本文中,我们描述了烟草叶绿体载体DENV-1蛋白III的新插入位点的构建。本研究成功地证明了烟草叶绿体中登革热病毒包膜蛋白结构域III (EDIII)抗原的产生。我们获得了表达EDIII登革热抗原的转化烟草系,并通过Southern blotting分析得到证实。此外,通过免疫印迹进一步证实EDIII抗原的表达并定量。这些发现表明,烟草叶绿体工程有望成为未来生产安全、负担得起和有效的口服登革热增强疫苗的一种方法,有助于全球管理和控制这种特殊的登革热感染。
{"title":"Development of tobacco chloroplast vector with novel insertion sites for dengue virus (DENV) antigens.","authors":"Hailah M Almohaimeed, Rasha Assiri, Waheeb S Aggad, Meshal M ALsharafa, Sara F Faloudah, Ahmed M Abdulfattah, Fayez Alsulaimani, Ahmed M Basri","doi":"10.1007/s00709-025-02087-5","DOIUrl":"10.1007/s00709-025-02087-5","url":null,"abstract":"<p><p>Dengue virus (DENV) is a substantial global health threat with no specific antiviral treatment available. The development of effective vaccines is crucial to combat DENV infections. Plant-based expression systems, such as tobacco chloroplasts, have emerged as promising platforms for the production of DENV antigens. In this research article, we describe the construction of a tobacco chloroplast vector with novel insertion sites for DENV-1 protein III. Our present study successfully demonstrated the production of the envelope protein structural domain III (EDIII) dengue virus antigen in tobacco chloroplasts. We obtained transformed tobacco lines that show the expression of EDIII dengue antigen and were confirmed through Southern blotting analysis. Furthermore, the expression of EDIII antigen was further confirmed via immunoblotting and quantified. These findings suggest that tobacco chloroplast engineering holds promise as a method for future manufacture of an oral dengue boost vaccine that is safe, affordable, and effective, contributing to the global management and control of this particular dengue infection.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":"161-167"},"PeriodicalIF":2.5,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144660019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Protoplasma
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1