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Phosphate deprivation counteracts the cell death caused by loss-of-function of MEDIATOR 18 in Arabidopsis root meristems. 在拟南芥根分生组织中,磷酸盐剥夺抵消了由MEDIATOR 18功能丧失引起的细胞死亡。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-07-07 DOI: 10.1007/s00709-025-02094-6
María Fernanda Ballesteros-Barrera, Adrián Ávalos-Rangel, Javier Raya-González, Jesús Salvador López-Bucio, José López-Bucio

Mutation of MEDIATOR 18 leads to death of highly proliferating cells within the Arabidopsis root apical meristem, which impairs root growth. Phosphate (Pi) is a macronutrient required to support mitotic activity in meristems, and its deficiency causes root growth inhibition; thus, we hypothesized that Pi availability could influence cell viability as well. With this in mind, in vitro experiments were performed varying the Pi concentration (0, 1, 10, and 250 µM) in the growth medium of Arabidopsis WT seedlings and med18-1 mutants to analyze meristem integrity and root hair development and correlate it with gene expression of selected promoter-reporter gene fusions. We found that WT (Col-0) seedlings entered the already reported determinate root growth program that terminates mitosis and differentiates primary root meristems at low (0, 1, and 10 µM) Pi concentrations. Unexpectedly, in marked contrast to the WT, med18-1 null mutant seedlings had healthy meristems under low Pi availability, and the cell death occurred only at high Pi (250 µM Pi). Root hair density and length were greater in med18-1 mutants than WT at all Pi concentrations tested. Gene expression analyses for cell cycle, auxin, and damage response as well as detection of hydrogen peroxide indicated that MED18 promotes the transit from cell division into differentiation of primary root tips induced by Pi starvation but protects the root meristem from genotoxic stress upon zeocin application. These results uncover an unexpected finding in which the lack of an essential macronutrient decreases the genotoxic pressure to highly proliferating plant cells.

调解18的突变会导致拟南芥根尖分生组织内高度增殖的细胞死亡,从而影响根的生长。磷酸盐(Pi)是支持分生组织有丝分裂活动所需的大量营养素,其缺乏会导致根生长抑制;因此,我们假设Pi的可用性也会影响细胞的活力。考虑到这一点,我们在拟南芥WT幼苗和med18-1突变体的生长培养基中进行了不同浓度(0、1、10和250µM)的体外实验,以分析分生组织完整性和根毛发育,并将其与选定的启动子报告基因融合的基因表达联系起来。我们发现WT (Col-0)幼苗在低(0,1和10µM) Pi浓度下进入了已经报道的确定的根生长程序,终止有丝分裂并分化初生根分生组织。出乎意料的是,与WT形成鲜明对比的是,med18-1零突变体幼苗在低Pi有效度下有健康的分生组织,仅在高Pi(250µM Pi)时发生细胞死亡。在所有测试的Pi浓度下,med18-1突变体的根毛密度和长度都大于WT。细胞周期、生长素和损伤反应的基因表达分析以及过氧化氢检测表明,MED18促进了Pi饥饿诱导的初生根尖细胞分裂向分化的过渡,但在使用zeocin时保护根分生组织免受基因毒性胁迫。这些结果揭示了一个意想不到的发现,即缺乏一种必需的大量营养素会降低对高度增殖的植物细胞的遗传毒性压力。
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引用次数: 0
Isolation and characterization of Avena sativa catalase 1 gene (AsCAT1) with potential role in plant response to abiotic stress conditions. Avena sativa过氧化氢酶1基因(AsCAT1)的分离与鉴定及其在植物非生物胁迫响应中的潜在作用
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2026-01-01 Epub Date: 2025-07-03 DOI: 10.1007/s00709-025-02090-w
Mouna Ghorbel, Ahmed Alghamidi, Khalil Mseddi, Faiçal Brini

The antioxidant defense mechanisms that shield eukaryotes from oxidative stress depend heavily on the enzyme catalase (CAT). These proteins, which are found in nearly all living creatures, perform crucial functions in regulating how plants react to biotic and abiotic stimuli by regulating the breakdown of H2O2. CAT is encoded by a small gene family in plants. In the current study, the first catalase gene from oat (Avena sativa L.) designated AsCAT1 was isolated and characterized. The corresponding AsCAT1 protein has 492 amino acids and presented a significant similarity with other catalase proteins in subfamily 1, according to phylogenetic study. A peroxisomal targeting signature (PTS1), as shown for other catalase proteins, is present at the C-terminal portion of AsCAT1 which confers a peroxisomal localization of this protein. AsCAT1 protein has a catalytic activity that could be stimulated by different cations. The expression of AsCAT1 protein in bacterial cells conferred tolerance to some abiotic stresses (NaCl, sorbitol, and LiCl). AsCAT1 is highly expressed in leaves, but its expression is low in roots as previously shown for other monocotyledonous plants. Interestingly, AsCAT1 gene expression is upregulated in response to a variety of stimuli, including hormonal, osmotic, salt, and heavy metal exposures. Our data strongly suggest that AsCAT1 is a crucial gene implicated in oat to aid this species in fending off environmental challenges. Such results help in further understanding the functions of catalase proteins in monocotyledonous plants in general and oat in particular.

保护真核生物免受氧化应激的抗氧化防御机制在很大程度上依赖于过氧化氢酶(CAT)。这些蛋白质几乎存在于所有生物体内,通过调节H2O2的分解,在调节植物对生物和非生物刺激的反应中发挥着至关重要的作用。CAT是由植物中的一个小基因家族编码的。本研究从燕麦(Avena sativa L.)中分离并鉴定了首个过氧化氢酶基因AsCAT1。系统发育研究表明,AsCAT1蛋白具有492个氨基酸,与亚家族1中其他过氧化氢酶蛋白具有显著的相似性。如其他过氧化氢酶蛋白所示,AsCAT1的c端部分存在过氧化物酶体靶向特征(PTS1),这赋予了该蛋白的过氧化物酶体定位。AsCAT1蛋白具有催化活性,可以被不同的阳离子刺激。细菌细胞中AsCAT1蛋白的表达赋予了对一些非生物胁迫(NaCl、山梨醇和LiCl)的耐受性。AsCAT1在叶片中高表达,但在其他单子叶植物的根中表达较低。有趣的是,AsCAT1基因表达在多种刺激下上调,包括激素、渗透、盐和重金属暴露。我们的数据强烈表明,AsCAT1是燕麦中一个关键的基因,可以帮助这个物种抵御环境的挑战。这些结果有助于进一步了解过氧化氢酶蛋白在单子叶植物中的功能,特别是燕麦。
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引用次数: 0
Methyl jasmonate enhances carotenoid accumulation and lignin deposition in carrot taproot. 茉莉酸甲酯促进胡萝卜主根类胡萝卜素积累和木质素沉积。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-23 DOI: 10.1007/s00709-025-02153-y
Guang-Long Wang, Jia-Qi Wu, Yan-Xin Ge, Lin-Yan Jia, Cheng-Ling Zhou, Xu-Qin Ren, Ai-Sheng Xiong

Jasmonates are important plant hormones widely involved in processes such as plant growth and stress responses. However, the effects of jasmonic acid on the growth, development, and quality formation in carrots (Daucus carota L.) are less frequently reported. In this study, treatments of 100 µmol/L methyl jasmonate (MeJA), 200 µmol/L MeJA, and 10 mmol/L sodium diethyldithiocarbamate (DIECA) were established, with water serving as the control group, to investigate the effects of different concentrations of MeJA and its inhibitor DIECA on carrot growth and development, fleshy root structure, and the accumulation of lignin and carotenoids. Compared to the control, MeJA treatment significantly increased the number of xylem vessels in the carrot fleshy root, with thickened cell walls, enhanced lignin-related enzyme activities, and well-developed xylem. Different concentrations of MeJA promoted the accumulation of both lignin and carotenoids in carrots, whereas DIECA treatment did the opposite. Gene expression analysis indicated that MeJA altered the transcript levels of genes in carotenoid and lignin metabolism. The research findings in this paper would provide new insights into jasmonic acid-mediated carrot root development and quality formation.

茉莉酸盐是一种重要的植物激素,广泛参与植物生长和逆境反应等过程。然而,茉莉酸对胡萝卜(Daucus carota L.)生长、发育和品质形成的影响很少被报道。本研究以100µmol/L茉莉酸甲酯(MeJA)、200µmol/L MeJA和10 mmol/L二乙基二硫代氨基甲酸钠(DIECA)为处理条件,以水为对照组,研究不同浓度茉莉酸甲酯及其抑制剂DIECA对胡萝卜生长发育、肉质根结构、木质素和类胡萝卜素积累的影响。与对照相比,MeJA处理显著增加了胡萝卜肉质根木质部导管数量,细胞壁增厚,木质素相关酶活性增强,木质部发育良好。不同浓度的MeJA促进了胡萝卜中木质素和类胡萝卜素的积累,而DIECA处理则相反。基因表达分析表明,MeJA改变了类胡萝卜素和木质素代谢相关基因的转录水平。本研究结果将为茉莉酸介导的胡萝卜根发育和品质形成提供新的认识。
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引用次数: 0
Cellulose-based nanomaterials: innovations in wound healing and regenerative medicine. 纤维素基纳米材料:伤口愈合和再生医学的创新。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-19 DOI: 10.1007/s00709-025-02143-0
Kiran Dudhat, Ishaan Garach, Dhaval Mori
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引用次数: 0
Physcomitrium patens: an emerging model for autophagy study. 壶状胞菌:一个新兴的自噬研究模型。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-17 DOI: 10.1007/s00709-025-02148-9
Md Arif Sakil

Physcomitrium patens (formerly Physcomitrella patens), a model moss species, has emerged as an invaluable system for studying autophagy in plants. This review highlights the unique advantages of P. patens for autophagy research, including its efficient homologous recombination in mitotic cells, simple body plan, haploid-presiding life cycle, and accessibility to microscopic observation. I discuss recent advances in understanding autophagy mechanisms in P. patens, particularly focusing on the role of core autophagy-related (ATG) genes in growth, development, stress responses, and cell death. The characterization of autophagy-deficient mutants revealed unexpected roles of autophagy in promoting cell death under oxidative stress and desiccation, in contrast with classical survival functions. I also examine the conservation and divergence of the autophagy machinery between mosses and vascular plants, emphasizing how P. patens bridges evolutionary gaps in our understanding of plant autophagy. Finally, I outline future perspectives on the use of this model system to address fundamental questions about selective autophagy, autophagosome dynamics, and the integration of autophagy with developmental programs.

模式藓属(Physcomitrium patens,原Physcomitrella patens)已成为研究植物自噬的宝贵系统。本文综述了植物自噬研究的独特优势,包括其在有丝分裂细胞中同源重组效率高、体结构简单、单倍体主导生命周期、易于显微镜观察等。我讨论了最近在理解自噬机制方面的进展,特别是关注核心自噬相关(ATG)基因在生长、发育、应激反应和细胞死亡中的作用。自噬缺陷突变体的特征揭示了自噬在氧化应激和干燥下促进细胞死亡的意想不到的作用,与经典的生存功能相反。我还研究了苔藓和维管植物之间自噬机制的保存和分化,强调了patens如何在我们对植物自噬的理解中弥合进化差距。最后,我概述了使用该模型系统来解决有关选择性自噬、自噬体动力学以及自噬与发育程序的整合等基本问题的未来前景。
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引用次数: 0
Sem-based characterization of Psylliodes valida weise, 1889 (Galerucinae: Alticini): aedeagus and spermatheca in high detail. 基于扫描电镜的验证木,1889 (Galerucinae: Alticini): aedeagus和精囊的详细表征。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-11 DOI: 10.1007/s00709-025-02140-3
Neslihan Bal

The paper presents unknown ultrastructure observed by scanning electron microscope (SEM) of aedeagus, spermatheca and body morphology of Psylliodes valida Weise, 1889 (Coleoptera: Chrysomelidae: Galerucinae) from Türkiye. This species, which belongs to one of the genera that is very important in biological control, is a new record for Çorum province and the Central Anatolia Region, where it was collected in August 2023.The genus Psylliodes Latreille includes 200 species in the worldwide, while it is represented by 42 species in Türkiye. As known, aedeagus, spermatheca and body morphology are taxonomically important structures. However, before the present study, the structural morphology of these features in Psylliodes Latreille had not been addressed in any previous research, leaving a notable gap in the literature For this reason, ultrastructural and detailed investigations of aedeagus, spermatheca and body morphology of Psylliodes Latreille from Türkiye were firstly studied with SEM to contain male and female genital descriptions of Psylliodes valida Weise, 1889. Photos in SEM are also given in the text.

本文用扫描电子显微镜(SEM)观察了产自泰国 rkiye(鞘翅目:金蝇科:金蝇科)1889年的木蝇(Psylliodes valida Weise)的喙部、精囊和身体形态。该种为Çorum省和中安纳托利亚地区于2023年8月采集的新记录种,属生物防治重要属之一。木虱属(Psylliodes Latreille)在世界范围内共有200种,而在泰国以42种为代表。众所周知,aedeagus,精囊和身体形态是分类学上重要的结构。然而,在本研究之前,这些特征的结构形态在以往的研究中没有涉及到,在文献中留下了明显的空白。为此,我们首先用扫描电镜研究了来自 rkiye的木虱(Psylliodes Latreille)的aedeagus、精囊和身体形态的超微结构和详细调查,并包含了木虱(Psylliodes valida Weise, 1889)的雄性和雌性生殖器描述。SEM中的照片也在文中给出。
{"title":"Sem-based characterization of Psylliodes valida weise, 1889 (Galerucinae: Alticini): aedeagus and spermatheca in high detail.","authors":"Neslihan Bal","doi":"10.1007/s00709-025-02140-3","DOIUrl":"https://doi.org/10.1007/s00709-025-02140-3","url":null,"abstract":"<p><p>The paper presents unknown ultrastructure observed by scanning electron microscope (SEM) of aedeagus, spermatheca and body morphology of Psylliodes valida Weise, 1889 (Coleoptera: Chrysomelidae: Galerucinae) from Türkiye. This species, which belongs to one of the genera that is very important in biological control, is a new record for Çorum province and the Central Anatolia Region, where it was collected in August 2023.The genus Psylliodes Latreille includes 200 species in the worldwide, while it is represented by 42 species in Türkiye. As known, aedeagus, spermatheca and body morphology are taxonomically important structures. However, before the present study, the structural morphology of these features in Psylliodes Latreille had not been addressed in any previous research, leaving a notable gap in the literature For this reason, ultrastructural and detailed investigations of aedeagus, spermatheca and body morphology of Psylliodes Latreille from Türkiye were firstly studied with SEM to contain male and female genital descriptions of Psylliodes valida Weise, 1889. Photos in SEM are also given in the text.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145725792","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A quantitative split firefly luciferase complementation assay (SplitLUC) for in planta protein-protein interactions. 植物蛋白-蛋白相互作用的荧光素酶定量互补分析(SplitLUC)。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-11 DOI: 10.1007/s00709-025-02146-x
Qianwei Liu, Rainer Kembügler, Francesc Felipe, Jathish Ponnu

Understanding protein-protein interactions (PPIs) in planta is essential for deciphering the molecular mechanisms underlying plant development and responses to environmental stresses. Here, we demonstrate the application of the split firefly luciferase complementation assay (SplitLUC) using a cooled charge-coupled device (CCD)-based plant imaging system and a microplate reader to detect and quantify PPIs in planta. As an example, we investigated the previously reported interaction between DET1- and DDB1-ASSOCIATED 1 (DDA1), a component of the CULLIN4 (CUL4)-E3 ubiquitin ligase complex, and PYR1-like 8 (PYL8), a known substrate of the same complex. Co-infiltration of Agrobacterium strains carrying DDA1-nLUC and cLUC-PYL8 constructs resulted in a robust luminescent signal upon addition of D-luciferin, which was visualised and quantified using the NightSHADE evo Plant Imaging System. Control combinations lacking either fusion partner or containing only empty vectors did not produce detectable luminescence, confirming the specificity of the interaction. To account for infiltration efficiency and variability in transgene expression, the luminescence values were normalised against fluorescence from co-infiltrated TagRFP, measured using a Tecan Spark microplate reader. This normalisation strategy effectively mitigated leaf-to-leaf variation in luminescence signals and demonstrated that the SplitLUC assay, when combined with fluorescence-based normalisation, provides a robust and reliable quantitative method for studying PPIs in planta. We propose that this approach is well-suited for investigating weaker interactions, assessing the influence of additional (bridge) proteins, and mapping interaction domains within the proteins of interest.

了解植物中蛋白质-蛋白质相互作用(PPIs)对于破译植物发育和对环境胁迫反应的分子机制至关重要。在这里,我们展示了使用基于冷却电荷耦合器件(CCD)的植物成像系统和微孔板读取器来检测和定量植物中ppi的分裂萤火虫荧光素酶互补试验(SplitLUC)的应用。作为一个例子,我们研究了先前报道的DET1-和DDB1-ASSOCIATED 1 (DDA1)之间的相互作用,DDA1是CULLIN4 (CUL4)- e3泛素连接酶复合物的一个组成部分,PYR1-like 8 (PYL8)是同一复合物的已知底物。携带DDA1-nLUC和cLUC-PYL8构建体的农杆菌菌株共浸润,在添加d -荧光素后产生强大的发光信号,使用NightSHADE evo植物成像系统对其进行可视化和量化。缺少融合伴侣或只包含空载体的对照组合没有产生可检测的发光,证实了相互作用的特异性。为了考虑浸润效率和转基因表达的可变性,使用Tecan Spark微孔板读取器对共浸润TagRFP的荧光进行了发光值归一化。这种归一化策略有效地减轻了叶片间发光信号的变化,并证明SplitLUC分析与基于荧光的归一化相结合,为研究植物中ppi提供了一种强大而可靠的定量方法。我们认为这种方法非常适合于研究弱相互作用,评估附加(桥)蛋白的影响,以及在感兴趣的蛋白中绘制相互作用域。
{"title":"A quantitative split firefly luciferase complementation assay (SplitLUC) for in planta protein-protein interactions.","authors":"Qianwei Liu, Rainer Kembügler, Francesc Felipe, Jathish Ponnu","doi":"10.1007/s00709-025-02146-x","DOIUrl":"https://doi.org/10.1007/s00709-025-02146-x","url":null,"abstract":"<p><p>Understanding protein-protein interactions (PPIs) in planta is essential for deciphering the molecular mechanisms underlying plant development and responses to environmental stresses. Here, we demonstrate the application of the split firefly luciferase complementation assay (SplitLUC) using a cooled charge-coupled device (CCD)-based plant imaging system and a microplate reader to detect and quantify PPIs in planta. As an example, we investigated the previously reported interaction between DET1- and DDB1-ASSOCIATED 1 (DDA1), a component of the CULLIN4 (CUL4)-E3 ubiquitin ligase complex, and PYR1-like 8 (PYL8), a known substrate of the same complex. Co-infiltration of Agrobacterium strains carrying DDA1-nLUC and cLUC-PYL8 constructs resulted in a robust luminescent signal upon addition of D-luciferin, which was visualised and quantified using the NightSHADE evo Plant Imaging System. Control combinations lacking either fusion partner or containing only empty vectors did not produce detectable luminescence, confirming the specificity of the interaction. To account for infiltration efficiency and variability in transgene expression, the luminescence values were normalised against fluorescence from co-infiltrated TagRFP, measured using a Tecan Spark microplate reader. This normalisation strategy effectively mitigated leaf-to-leaf variation in luminescence signals and demonstrated that the SplitLUC assay, when combined with fluorescence-based normalisation, provides a robust and reliable quantitative method for studying PPIs in planta. We propose that this approach is well-suited for investigating weaker interactions, assessing the influence of additional (bridge) proteins, and mapping interaction domains within the proteins of interest.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145725732","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative analysis of the biochemical composition of fruit tissues in representatives of the Malus sect. Chloromeles. 标题苹果属代表性植物果实组织生化成分的比较分析。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-10 DOI: 10.1007/s00709-025-02129-y
Elena Rudikovskaya, Lyubov Dudareva, Zlata Stavitskaya, Lyudmila Vanina, Igor Gorbenko, Alexander Rudikovskii

This research represents the first comprehensive biochemical analysis of mature fruits from apple trees of the Chloromeles section, specifically examining Malus coronaria, Malus ioensis, Malus × platycarpa and Malus × soulardii. The experimental investigations revealed distinctive compositional characteristics in lipids, carbohydrates, flavonoids, and chlorophylls that markedly differentiate these species from other representatives of the genus Malus. Specifically, our research revealed the absence of procyanidin B1 and a high content of chlorogenic acid, accompanied by remarkably low quantities of cinnamic acid and its derivatives. Linoleic acid represented approximately 50% of the total fatty acid profile, which is substantially lower compared to the lipid content commonly observed in domesticated apple varieties. Conversely, the linolenic acid concentration was significantly higher. Fructose levels in fruit tissues of the Chloromeles section ranged from 15% in M. ioensis to 50% in M. coronaria, the section's largest fruiting species. Additionally, the analysis revealed the presence of transport sugars and highly etherified protopectins. Unlike other Malus, the Chloromeles section mature fruits exhibited high chlorophyll and low carotenoid contents. These pigments were present in both the peel and pulp tissues. The observed composition, including elevated transport sugar and protopectin levels, is typically associated with fruits at early ripening stages. This may contribute to the suboptimal flavor development, despite the presence of a relatively high total soluble sugar content.

本研究首次对Chloromeles剖面的苹果成熟果实进行了全面的生化分析,特别是对苹果(Malus coronaria)、苹果(Malus ioensis)、苹果(Malus x platycarpa)和苹果(Malus x soulardii)进行了研究。实验研究表明,这些物种在脂质、碳水化合物、黄酮类化合物和叶绿素方面的独特组成特征显著地将这些物种与其他海棠属的代表区分开来。具体来说,我们的研究发现原花青素B1不存在,绿原酸含量很高,肉桂酸及其衍生物含量非常低。亚油酸约占总脂肪酸的50%,与在驯化的苹果品种中普遍观察到的脂质含量相比,亚油酸的含量要低得多。相反,亚麻酸浓度显著升高。Chloromeles部分果实组织中的果糖含量从M. ioensis的15%到M. coronaria的50%不等,M. coronaria是该部分最大的果种。此外,分析还揭示了运输糖和高度醚化的原蛋白的存在。与其他海棠不同的是,其成熟果实叶绿素含量高,类胡萝卜素含量低。这些色素存在于果皮和果肉组织中。观察到的成分,包括运输糖和原蛋白水平的升高,通常与早熟阶段的水果有关。尽管存在相对较高的总可溶性糖含量,但这可能会导致风味发育不佳。
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引用次数: 0
Artificial MicroRNA delivery and gene silencing via extracellular vesicles derived from molecularly modified tobacco. 通过分子修饰烟草细胞外囊泡的人工MicroRNA传递和基因沉默。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-10 DOI: 10.1007/s00709-025-02130-5
Yury Shkryl, Zhargalma Tsydeneshieva, Tatiana Gorpenchenko, Vitaly Kazarin, Olesya Kudinova, Victor Bulgakov, Yulia Yugay
{"title":"Artificial MicroRNA delivery and gene silencing via extracellular vesicles derived from molecularly modified tobacco.","authors":"Yury Shkryl, Zhargalma Tsydeneshieva, Tatiana Gorpenchenko, Vitaly Kazarin, Olesya Kudinova, Victor Bulgakov, Yulia Yugay","doi":"10.1007/s00709-025-02130-5","DOIUrl":"https://doi.org/10.1007/s00709-025-02130-5","url":null,"abstract":"","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145715526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative phosphoproteomic network analysis identifies CAMK2D as a shared regulator of TPD52 family proteins in cancer. 综合磷酸化蛋白质组学网络分析发现CAMK2D是癌症中TPD52家族蛋白的共享调节因子。
IF 2.5 3区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-12-09 DOI: 10.1007/s00709-025-02145-y
Noreen A Khan, Amal Fahma, Althaf Mahin, Athira Perunelly Gopalakrishnan, Prathik Basthikoppa Shivamurthy, Athira C Rajeev, Rajesh Raju

The Tumour Protein D52 (TPD52) family, including TPD52, TPD52L1, and TPD52L2, plays critical roles in membrane trafficking, lipid metabolism, and oncogenic signalling, with its overexpression linked to multiple cancers. Phosphorylation is a key regulator of their functions, yet their phosphoproteomic landscape remains underexplored. This study integrates over 3,825 public human phosphoproteomic datasets to map phosphorylation profiles of TPD52, TPD52L1, and TPD52L2, identifying dominant phosphosites like S171, S176, S149, and S12, S166 within conserved coiled-coil and PEST-like domains. CAMK2D was identified as a predominant shared kinase, alongside CDK2 and GRK5, associating these modifications with calcium signaling, cell cycle progression, and cytoskeletal remodeling. Co-phosphoregulation highlighted positive interactions with ABRAXAS2 and negative correlations with ABLIM3, implicating involvement in ubiquitin-mediated degradation, epithelial-mesenchymal transition (EMT), and cytokinesis. Notably, hypophosphorylation at TPD52_S171/S176 was observed in hepatocellular and lung carcinomas, whereas hyperphosphorylation at TPD52L2_S166 prevailed in ovarian and pancreatic cancers, underscoring biomarker utility. Phosphorylation-driven interactomes emphasized roles in vesicular trafficking and oncogenesis This study catalogues the phosphorylation events and explores the potential of TPD52 family as a phosphoregulated hub in cancer biology, with CAMK2D as a potential therapeutic target.

肿瘤蛋白D52 (TPD52)家族,包括TPD52、TPD52L1和TPD52L2,在膜运输、脂质代谢和致癌信号传导中起关键作用,其过表达与多种癌症有关。磷酸化是其功能的关键调节因子,但其磷酸化蛋白质组学景观仍未得到充分研究。本研究整合了超过3,825个公开的人类磷酸化蛋白质组学数据集,绘制了TPD52、TPD52L1和TPD52L2的磷酸化图谱,确定了保守卷曲和pest样结构域内的优势磷酸化位点,如S171、S176、S149和S12、S166。CAMK2D与CDK2和GRK5一起被确定为主要的共享激酶,这些修饰与钙信号传导、细胞周期进展和细胞骨架重塑有关。共磷酸化调控强调了与ABRAXAS2的正相互作用和与ABLIM3的负相关,涉及泛素介导的降解、上皮-间质转化(EMT)和细胞分裂。值得注意的是,TPD52_S171/S176的低磷酸化在肝细胞癌和肺癌中被观察到,而TPD52L2_S166的高磷酸化在卵巢癌和胰腺癌中普遍存在,这强调了生物标志物的实用性。本研究对磷酸化事件进行了分类,并探讨了TPD52家族在癌症生物学中作为磷酸化调节中心的潜力,并将CAMK2D作为潜在的治疗靶点。
{"title":"Integrative phosphoproteomic network analysis identifies CAMK2D as a shared regulator of TPD52 family proteins in cancer.","authors":"Noreen A Khan, Amal Fahma, Althaf Mahin, Athira Perunelly Gopalakrishnan, Prathik Basthikoppa Shivamurthy, Athira C Rajeev, Rajesh Raju","doi":"10.1007/s00709-025-02145-y","DOIUrl":"https://doi.org/10.1007/s00709-025-02145-y","url":null,"abstract":"<p><p>The Tumour Protein D52 (TPD52) family, including TPD52, TPD52L1, and TPD52L2, plays critical roles in membrane trafficking, lipid metabolism, and oncogenic signalling, with its overexpression linked to multiple cancers. Phosphorylation is a key regulator of their functions, yet their phosphoproteomic landscape remains underexplored. This study integrates over 3,825 public human phosphoproteomic datasets to map phosphorylation profiles of TPD52, TPD52L1, and TPD52L2, identifying dominant phosphosites like S171, S176, S149, and S12, S166 within conserved coiled-coil and PEST-like domains. CAMK2D was identified as a predominant shared kinase, alongside CDK2 and GRK5, associating these modifications with calcium signaling, cell cycle progression, and cytoskeletal remodeling. Co-phosphoregulation highlighted positive interactions with ABRAXAS2 and negative correlations with ABLIM3, implicating involvement in ubiquitin-mediated degradation, epithelial-mesenchymal transition (EMT), and cytokinesis. Notably, hypophosphorylation at TPD52_S171/S176 was observed in hepatocellular and lung carcinomas, whereas hyperphosphorylation at TPD52L2_S166 prevailed in ovarian and pancreatic cancers, underscoring biomarker utility. Phosphorylation-driven interactomes emphasized roles in vesicular trafficking and oncogenesis This study catalogues the phosphorylation events and explores the potential of TPD52 family as a phosphoregulated hub in cancer biology, with CAMK2D as a potential therapeutic target.</p>","PeriodicalId":20731,"journal":{"name":"Protoplasma","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145708832","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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