Pub Date : 2024-10-23eCollection Date: 2024-10-01DOI: 10.1098/rsos.240538
Chris J Law, Tate J Linden, John J Flynn
Madagascar is one of the world's foremost biodiversity hotspots with more than 90% of its species endemic to the island. Malagasy carnivorans are one of only four extant terrestrial mammalian clades endemic to Madagascar. Although there are only eight extant species, these carnivorans exhibit remarkable phenotypic and ecological diversity that is often hypothesized to have diversified through an adaptive radiation. Here, we investigated the evolution of skull diversity in Malagasy carnivorans and tested if they exhibited characteristics of convergence and an adaptive radiation. We found that their skull disparity exceeds that of any other feliform family, as their skulls vary widely and strikingly capture a large amount of the morphological variation found across all feliforms. We also found evidence of shared adaptive zones in cranial shape between euplerid subclades and felids, herpestids and viverrids. Lastly, contrary to predictions of adaptive radiation, we found that Malagasy carnivorans do not exhibit rapid lineage diversification and only marginally faster rates of mandibular shape evolution and to a lesser extent cranial shape evolution, compared to other feliforms. These results reveal that exceptional diversification rates are not necessary to generate the striking phenotypic diversity that evolved in carnivorans after their dispersal to and isolation on Madagascar.
{"title":"Skull evolution and lineage diversification in endemic Malagasy carnivorans.","authors":"Chris J Law, Tate J Linden, John J Flynn","doi":"10.1098/rsos.240538","DOIUrl":"https://doi.org/10.1098/rsos.240538","url":null,"abstract":"<p><p>Madagascar is one of the world's foremost biodiversity hotspots with more than 90% of its species endemic to the island. Malagasy carnivorans are one of only four extant terrestrial mammalian clades endemic to Madagascar. Although there are only eight extant species, these carnivorans exhibit remarkable phenotypic and ecological diversity that is often hypothesized to have diversified through an adaptive radiation. Here, we investigated the evolution of skull diversity in Malagasy carnivorans and tested if they exhibited characteristics of convergence and an adaptive radiation. We found that their skull disparity exceeds that of any other feliform family, as their skulls vary widely and strikingly capture a large amount of the morphological variation found across all feliforms. We also found evidence of shared adaptive zones in cranial shape between euplerid subclades and felids, herpestids and viverrids. Lastly, contrary to predictions of adaptive radiation, we found that Malagasy carnivorans do not exhibit rapid lineage diversification and only marginally faster rates of mandibular shape evolution and to a lesser extent cranial shape evolution, compared to other feliforms. These results reveal that exceptional diversification rates are not necessary to generate the striking phenotypic diversity that evolved in carnivorans after their dispersal to and isolation on Madagascar.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240538"},"PeriodicalIF":2.9,"publicationDate":"2024-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11496717/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142507068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-16eCollection Date: 2024-10-01DOI: 10.1098/rsos.240452
Katherine A Turk, Mikaela A Pulsipher, Helke Mocke, Marc Laflamme, Simon A F Darroch
Himatiichnus mangano igen. et isp. nov., a new trace fossil from the late Ediacaran Huns Member of the Urusis Formation, southern Namibia, comprises intertwining tubes exhibiting dual lineation patterns and reminiscent of both modern and early Cambrian examples of priapulid worm burrows. These similarities support the interpretation of a total-group scalidophoran tracemaker for H. mangano, thus providing direct evidence for the first appearance date of Scalidophora in the late Ediacaran ca 539 Ma. This new material is thus indicative of the presence of total-group scalidophorans below the Cambrian boundary and supports inference of a lengthy Precambrian fuse for the Cambrian explosion.
Himatiichnus mangano igen. et isp. nov.是纳米比亚南部 Urusis Formation 埃迪卡拉晚期 Huns 成员中的一种新的痕量化石,它由相互缠绕的管子组成,表现出双重线纹模式,让人联想到现代和寒武纪早期的priapulid蠕虫洞穴。这些相似性支持了对芒果 H. 的全群蝶形虫追踪器的解释,从而为蝶形虫首次出现在埃迪卡拉晚期(约 539 Ma)提供了直接证据。因此,这一新材料表明在寒武纪边界以下存在全群鳞角类,并支持寒武纪大爆发的漫长前寒武纪引信的推断。
{"title":"<i>Himatiichnus mangano</i> igen. et isp. nov., a scalidophoran trace fossil from the late Ediacaran of Namibia.","authors":"Katherine A Turk, Mikaela A Pulsipher, Helke Mocke, Marc Laflamme, Simon A F Darroch","doi":"10.1098/rsos.240452","DOIUrl":"10.1098/rsos.240452","url":null,"abstract":"<p><p><i>Himatiichnus mangano</i> igen. et isp. nov., a new trace fossil from the late Ediacaran Huns Member of the Urusis Formation, southern Namibia, comprises intertwining tubes exhibiting dual lineation patterns and reminiscent of both modern and early Cambrian examples of priapulid worm burrows. These similarities support the interpretation of a total-group scalidophoran tracemaker for <i>H. mangano</i>, thus providing direct evidence for the first appearance date of Scalidophora in the late Ediacaran <i>ca</i> 539 Ma. This new material is thus indicative of the presence of total-group scalidophorans below the Cambrian boundary and supports inference of a lengthy Precambrian fuse for the Cambrian explosion.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240452"},"PeriodicalIF":2.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11523102/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142547141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-16eCollection Date: 2024-10-01DOI: 10.1098/rsos.240596
Michael A Berthaume, Matthew J Morley
Like many mammals, grasshoppers (infraorder Acrididea) chew using molariform structures. Despite decades of research on mammals, little is known about grasshopper molar form and how it relates to grasshopper feeding biomechanics, diet, dietary ecology and evolution. Here, we develop a method for quantifying molar form and apply it to two species of distantly related grasshoppers with different diets (Phymateus saxosus, seven females; Valanga nigricornis, seven females, 11 males). We show that there are quantifiable differences in molar form, potentially related to diet. There are some differences in molar shape between left and right molars in both species and sexes, and significant differences in molar size, potentially due to scaling. Like in mammals, molar wear can cause large differences in molar shape. Species differences in molar shape did not match what was expected based on mammalian molar functional morphology. Dental topographic analysis is a promising new avenue for quantifying molar form in grasshoppers and a distinct advantage over traditional two-dimensional microscopy methods, and promises to reveal much about the biology, biomechanics and evolution of Acrididea.
{"title":"Interspecific and intraspecific variation in grasshopper (Orthoptera: Acrididea) molar form: implications for dietary ecology.","authors":"Michael A Berthaume, Matthew J Morley","doi":"10.1098/rsos.240596","DOIUrl":"10.1098/rsos.240596","url":null,"abstract":"<p><p>Like many mammals, grasshoppers (infraorder Acrididea) chew using molariform structures. Despite decades of research on mammals, little is known about grasshopper molar form and how it relates to grasshopper feeding biomechanics, diet, dietary ecology and evolution. Here, we develop a method for quantifying molar form and apply it to two species of distantly related grasshoppers with different diets (<i>Phymateus saxosus</i>, seven females; <i>Valanga nigricornis</i>, seven females, 11 males). We show that there are quantifiable differences in molar form, potentially related to diet. There are some differences in molar shape between left and right molars in both species and sexes, and significant differences in molar size, potentially due to scaling. Like in mammals, molar wear can cause large differences in molar shape. Species differences in molar shape did not match what was expected based on mammalian molar functional morphology. Dental topographic analysis is a promising new avenue for quantifying molar form in grasshoppers and a distinct advantage over traditional two-dimensional microscopy methods, and promises to reveal much about the biology, biomechanics and evolution of Acrididea.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240596"},"PeriodicalIF":2.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11523494/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142547148","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-16eCollection Date: 2024-10-01DOI: 10.1098/rsos.240768
Andrew Schumann, Andrew Adamatzky, Jerzy Król, Eric Goles
In the article, we aim to understand the responses of living organisms, exemplified by mycelium, to external stimuli through the lens of a Turing machine with an oracle (oTM). To facilitate our exploration, we show that a variant of an oTM is a cellular automaton with an oracle, which aptly captures the intricate behaviours observed in organisms such as fungi, shedding light on their dynamic interactions with their environment. This interaction reveals forms of reflection that can be interpreted as a minimum volume of consciousness. Thus, in our study, we interpret consciousness as a mathematical phenomenon when an arithmetic function is arbitrarily modified. We call these modifications the hybridization of behaviour. oTMs are the mathematical language of this hybridization.
在这篇文章中,我们旨在通过带有甲骨文(oracle)的图灵机(Turing machine)来理解生物体(以菌丝体为例)对外部刺激的反应。为了便于我们的探索,我们展示了带甲骨文的细胞自动机(cellular automaton with an oracle)是 oTM 的一种变体,它能恰当地捕捉在真菌等生物体内观察到的复杂行为,揭示它们与环境的动态互动。这种互动揭示了反思的形式,可以被解释为意识的最小量。因此,在我们的研究中,当算术函数被任意修改时,我们将意识解释为一种数学现象。我们称这些修改为行为的混合。oTM 是这种混合的数学语言。
{"title":"Fungi as Turing automata with oracles.","authors":"Andrew Schumann, Andrew Adamatzky, Jerzy Król, Eric Goles","doi":"10.1098/rsos.240768","DOIUrl":"10.1098/rsos.240768","url":null,"abstract":"<p><p>In the article, we aim to understand the responses of living organisms, exemplified by mycelium, to external stimuli through the lens of a Turing machine with an oracle (oTM). To facilitate our exploration, we show that a variant of an oTM is a cellular automaton with an oracle, which aptly captures the intricate behaviours observed in organisms such as fungi, shedding light on their dynamic interactions with their environment. This interaction reveals forms of reflection that can be interpreted as a minimum volume of consciousness. Thus, in our study, we interpret consciousness as a mathematical phenomenon when an arithmetic function is arbitrarily modified. We call these modifications the hybridization of behaviour. oTMs are the mathematical language of this hybridization.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240768"},"PeriodicalIF":2.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11528491/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142569135","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-16eCollection Date: 2024-10-01DOI: 10.1098/rsos.240766
Daniel Appleby, Naomi Langmore, Robert Heinsohn, Ross Crates
Animal cultures can undergo rapid changes associated with innovations, revolutions or population decline. Where a rapid shift results in reduced complexity of cultural behaviours, it may have fitness consequences for individuals. Here, we report a dramatic shift in the dominant song type of critically endangered wild regent honeyeaters Anthochaera phrygia. Between 2015 and 2019, most males in the Blue Mountains sang a typical regent honeyeater song (typical Blue Mountains song), but 5%-10% sang an abbreviated version of the song with half the number of syllables (the clipped Blue Mountains song), which was associated with lower pairing success. Since 2020, the proportion of males singing the clipped Blue Mountains song has increased to 50%-75% each year. The likelihood of successful pairing in these males showed a significant concomitant increase, suggesting that the fitness costs associated with the abbreviated song decreased as it became the dominant song type. Our results suggest that the fitness consequences of loss of song complexity in declining and fragmented populations may be ameliorated by frequency-dependent shifts in song type preference.
{"title":"Frequency-dependence may moderate fitness costs linked to reduced bird song complexity.","authors":"Daniel Appleby, Naomi Langmore, Robert Heinsohn, Ross Crates","doi":"10.1098/rsos.240766","DOIUrl":"https://doi.org/10.1098/rsos.240766","url":null,"abstract":"<p><p>Animal cultures can undergo rapid changes associated with innovations, revolutions or population decline. Where a rapid shift results in reduced complexity of cultural behaviours, it may have fitness consequences for individuals. Here, we report a dramatic shift in the dominant song type of critically endangered wild regent honeyeaters <i>Anthochaera phrygia</i>. Between 2015 and 2019, most males in the Blue Mountains sang a typical regent honeyeater song (typical Blue Mountains song), but 5%-10% sang an abbreviated version of the song with half the number of syllables (the clipped Blue Mountains song), which was associated with lower pairing success. Since 2020, the proportion of males singing the clipped Blue Mountains song has increased to 50%-75% each year. The likelihood of successful pairing in these males showed a significant concomitant increase, suggesting that the fitness costs associated with the abbreviated song decreased as it became the dominant song type. Our results suggest that the fitness consequences of loss of song complexity in declining and fragmented populations may be ameliorated by frequency-dependent shifts in song type preference.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240766"},"PeriodicalIF":2.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11479755/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142473796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-16eCollection Date: 2024-10-01DOI: 10.1098/rsos.240658
Ellen Humbel, Rebecca Kimball, Lisa A Taylor
Sexual selection is often studied with a focus on female mate choice, wherein females evaluate male signals to select an optimal mate. However, in some systems, males should also make careful decisions about the females they choose to court, particularly when faced with the risk of precopulatory sexual cannibalism. Here, we explore the idea that male jumping spiders (Habronattus brunneus) may mitigate this risk by responding to female cues probably associated with female aggression and/or receptivity. We tested mature male spiders' ability to discriminate between substrate-borne cues (i.e. silk and excreta) produced by conspecific females of different ages and mating statuses. We found that males spent more time exploring cues produced by mature, non-mated females compared with either immature females or mated females. Heightened interest in cues produced by females that are sexually mature but not yet mated may allow males to reduce cannibalism risk, reduce wasted courtship effort and increase their reproductive success. The use of chemical and/or tactile cues in jumping spider courtship behaviour has been vastly understudied compared with the ways they use vision; this study provides the groundwork for understanding how these sensory modalities interact.
{"title":"Males discriminate between substrate-borne cues of conspecific females based on age and mating status in the jumping spider, <i>Habronattus brunneus</i>.","authors":"Ellen Humbel, Rebecca Kimball, Lisa A Taylor","doi":"10.1098/rsos.240658","DOIUrl":"https://doi.org/10.1098/rsos.240658","url":null,"abstract":"<p><p>Sexual selection is often studied with a focus on female mate choice, wherein females evaluate male signals to select an optimal mate. However, in some systems, males should also make careful decisions about the females they choose to court, particularly when faced with the risk of precopulatory sexual cannibalism. Here, we explore the idea that male jumping spiders (<i>Habronattus brunneus</i>) may mitigate this risk by responding to female cues probably associated with female aggression and/or receptivity. We tested mature male spiders' ability to discriminate between substrate-borne cues (i.e. silk and excreta) produced by conspecific females of different ages and mating statuses. We found that males spent more time exploring cues produced by mature, non-mated females compared with either immature females or mated females. Heightened interest in cues produced by females that are sexually mature but not yet mated may allow males to reduce cannibalism risk, reduce wasted courtship effort and increase their reproductive success. The use of chemical and/or tactile cues in jumping spider courtship behaviour has been vastly understudied compared with the ways they use vision; this study provides the groundwork for understanding how these sensory modalities interact.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240658"},"PeriodicalIF":2.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11479759/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142473797","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-10eCollection Date: 2024-10-01DOI: 10.1098/rsos.231797
Anton Antonovych Kozma
The values of the shear vs and longitudinal vl wave velocities were calculated for 14 selected titanium oxynitrides TiN x O y using the known values of Young's modulus and Debye temperature. The errors Δ of the calculations did not exceed ±0.01%. It turned out that some TiN x O y samples are able to compete with artificial diamonds in terms of vl values and can potentially be used in acoustic resonators for intelligent chemical and biochemical sensors. A number of elastic, thermodynamic and thermophysical quantities were calculated, and graphical dependencies between them were plotted. The established correlations were used to develop two algorithms for predicting the properties of TiN x O y alloys based on a single experimental parameter, namely the X-ray coefficient of thermal expansion or pycnometric density. The highest accuracy was shown by the method based on the experimental density, which allowed to estimate, with acceptable errors, the values of the shear vs and mean vm wave velocities (Δ = ±(1-5)%), the minimum thermal conductivity λmin within the framework of the Cahill‒Pohl model (Δ = ±(0-3)%), the isobaric Cp and isochoric CV heat capacities (Δ < 1%); while the known experimental methods and alternative models for determining these quantities are characterized by wider error intervals: Δ(vs) = ±(1-10)%, Δ(λ) = ±(1-10)% and Δ(Cp) = ±(1-3)%.
利用已知的杨氏模量和德拜温度值,计算了 14 种选定氧化钛 TiN x O y 的剪切波速 v s 和纵波波速 v l 值。计算误差 Δ 不超过 ±0.01%。结果表明,一些 TiN x O y 样品在 v l 值方面能够与人造钻石相媲美,并有可能用于智能化学和生化传感器的声共振。对一些弹性、热力学和热物理量进行了计算,并绘制了它们之间的图表关系。利用所建立的相关关系开发了两种算法,用于根据单一实验参数(即 X 射线热膨胀系数或 pycnometric 密度)预测 TiN x O y 合金的特性。基于实验密度的方法精度最高,可以在可接受的误差范围内估算出剪切波速 v s 和平均波速 v m 的值(Δ = ±(1-5)%)、Cahill-Pohl 模型框架内的最小热导率 λ min(Δ = ±(0-3)%)、等压 C p 和等时 C V 热容(Δ < 1%);而用于确定这些量的已知实验方法和替代模型的特点是误差范围更广:Δ(v s) = ±(1-10)%,Δ(λ) = ±(1-10)%,Δ(C p) = ±(1-3)%。
{"title":"Employing Young's modulus and Debye temperature to calculate the elastic, thermodynamic and thermophysical properties of titanium oxynitrides.","authors":"Anton Antonovych Kozma","doi":"10.1098/rsos.231797","DOIUrl":"10.1098/rsos.231797","url":null,"abstract":"<p><p>The values of the shear <i>v</i> <sub>s</sub> and longitudinal <i>v</i> <sub>l</sub> wave velocities were calculated for 14 selected titanium oxynitrides TiN <sub><i>x</i></sub> O <sub><i>y</i></sub> using the known values of Young's modulus and Debye temperature. The errors Δ of the calculations did not exceed ±0.01%. It turned out that some TiN <sub><i>x</i></sub> O <sub><i>y</i></sub> samples are able to compete with artificial diamonds in terms of <i>v</i> <sub>l</sub> values and can potentially be used in acoustic resonators for intelligent chemical and biochemical sensors. A number of elastic, thermodynamic and thermophysical quantities were calculated, and graphical dependencies between them were plotted. The established correlations were used to develop two algorithms for predicting the properties of TiN <sub><i>x</i></sub> O <sub><i>y</i></sub> alloys based on a single experimental parameter, namely the X-ray coefficient of thermal expansion or pycnometric density. The highest accuracy was shown by the method based on the experimental density, which allowed to estimate, with acceptable errors, the values of the shear <i>v</i> <sub>s</sub> and mean <i>v</i> <sub>m</sub> wave velocities (Δ = ±(1-5)%), the minimum thermal conductivity <i>λ</i> <sub>min</sub> within the framework of the Cahill‒Pohl model (Δ = ±(0-3)%), the isobaric <i>C</i> <sub>p</sub> and isochoric <i>C</i> <sub>V</sub> heat capacities (Δ < 1%); while the known experimental methods and alternative models for determining these quantities are characterized by wider error intervals: Δ(<i>v</i> <sub>s</sub>) = ±(1-10)%, Δ(<i>λ</i>) = ±(1-10)% and Δ(<i>C</i> <sub>p</sub>) = ±(1-3)%.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"231797"},"PeriodicalIF":2.9,"publicationDate":"2024-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11466229/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142401146","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-09eCollection Date: 2024-10-01DOI: 10.1098/rsos.240676
Shekhar, Francoise Roquet-Banères, Amit Anand, Laurent Kremer, Vipan Kumar
A set of alkyl-/1H-1,2,3-triazole-based dimers was strategically designed and synthesized to evaluate their in vitro anti-mycobacterial activities against Mycobacterium tuberculosis and the non-tuberculous Mycobacterium abscessus strains. Systematic variations in the nature (alkyl/1H-1,2,3-triazole) and positioning of the linker were implemented based on the docking scores observed in the binding sites identified in the crystal structures of InhA from M. tuberculosis and M. abscessus. However, the in vitro evaluation results revealed that the synthesized compounds did not exhibit inhibitory effects on the growth of mycobacteria, even at the highest tested concentrations. The elevated lipophilicity values determined through ADMET studies for these synthesized dimers might be a contributing factor to their poor activity profiles.
{"title":"Rational design and microwave-promoted synthesis of triclosan-based dimers: targeting InhA for anti-mycobacterial profiling.","authors":"Shekhar, Francoise Roquet-Banères, Amit Anand, Laurent Kremer, Vipan Kumar","doi":"10.1098/rsos.240676","DOIUrl":"10.1098/rsos.240676","url":null,"abstract":"<p><p>A set of alkyl-/1H-1,2,3-triazole-based dimers was strategically designed and synthesized to evaluate their <i>in vitro</i> anti-mycobacterial activities against <i>Mycobacterium tuberculosis</i> and the non-tuberculous <i>Mycobacterium abscessus</i> strains. Systematic variations in the nature (alkyl/1H-1,2,3-triazole) and positioning of the linker were implemented based on the docking scores observed in the binding sites identified in the crystal structures of InhA from <i>M. tuberculosis</i> and <i>M. abscessus</i>. However, the <i>in vitro</i> evaluation results revealed that the synthesized compounds did not exhibit inhibitory effects on the growth of mycobacteria, even at the highest tested concentrations. The elevated lipophilicity values determined through ADMET studies for these synthesized dimers might be a contributing factor to their poor activity profiles.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240676"},"PeriodicalIF":2.9,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11461061/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142406744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-09eCollection Date: 2024-10-01DOI: 10.1098/rsos.240180
Bojana Bodroža, Bojana M Dinić, Ljubiša Bojić
As large language models (LLMs) continue to gain popularity due to their human-like traits and the intimacy they offer to users, their societal impact inevitably expands. This leads to the rising necessity for comprehensive studies to fully understand LLMs and reveal their potential opportunities, drawbacks and overall societal impact. With that in mind, this research conducted an extensive investigation into seven LLMs, aiming to assess the temporal stability and inter-rater agreement on their responses on personality instruments in two time points. In addition, LLMs' personality profile was analysed and compared with human normative data. The findings revealed varying levels of inter-rater agreement in the LLMs' responses over a short time, with some LLMs showing higher agreement (e.g. Llama3 and GPT-4o) compared with others (e.g. GPT-4 and Gemini). Furthermore, agreement depended on used instruments as well as on domain or trait. This implies the variable robustness in LLMs' ability to reliably simulate stable personality characteristics. In the case of scales which showed at least fair agreement, LLMs displayed mostly a socially desirable profile in both agentic and communal domains, as well as a prosocial personality profile reflected in higher agreeableness and conscientiousness and lower Machiavellianism. Exhibiting temporal stability and coherent responses on personality traits is crucial for AI systems due to their societal impact and AI safety concerns.
{"title":"Personality testing of large language models: limited temporal stability, but highlighted prosociality.","authors":"Bojana Bodroža, Bojana M Dinić, Ljubiša Bojić","doi":"10.1098/rsos.240180","DOIUrl":"10.1098/rsos.240180","url":null,"abstract":"<p><p>As large language models (LLMs) continue to gain popularity due to their human-like traits and the intimacy they offer to users, their societal impact inevitably expands. This leads to the rising necessity for comprehensive studies to fully understand LLMs and reveal their potential opportunities, drawbacks and overall societal impact. With that in mind, this research conducted an extensive investigation into seven LLMs, aiming to assess the temporal stability and inter-rater agreement on their responses on personality instruments in two time points. In addition, LLMs' personality profile was analysed and compared with human normative data. The findings revealed varying levels of inter-rater agreement in the LLMs' responses over a short time, with some LLMs showing higher agreement (e.g. Llama3 and GPT-4o) compared with others (e.g. GPT-4 and Gemini). Furthermore, agreement depended on used instruments as well as on domain or trait. This implies the variable robustness in LLMs' ability to reliably simulate stable personality characteristics. In the case of scales which showed at least fair agreement, LLMs displayed mostly a socially desirable profile in both agentic and communal domains, as well as a prosocial personality profile reflected in higher agreeableness and conscientiousness and lower Machiavellianism. Exhibiting temporal stability and coherent responses on personality traits is crucial for AI systems due to their societal impact and AI safety concerns.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240180"},"PeriodicalIF":2.9,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11461045/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142392990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-09eCollection Date: 2024-10-01DOI: 10.1098/rsos.240332
Amrit Nepali, Hem Bahadur Katuwal, Sabin Kc, Sandeep Regmi, Hari Prasad Sharma
Urbanization induces homogenization and changes the behavioural patterns of various bird species, thereby facilitating coexistence and prompting adaptations to disturbances in urban environments. However, there is limited research on the influence of how urbanization affects bird tolerance towards humans, especially in developing sub-tropical regions such as Nepal, which is undergoing rapid unplanned urbanization. This study identified the flight initiation distance (FID) as a proxy for assessing bird tolerance. We focused on evaluating the human tolerance levels of 33 bird species using their FIDs in urban and rural habitats within Kathmandu Valley, a rapidly urbanizing city in South Asia. We found higher tolerance in urban birds than in their rural conspecifics, which varies mainly with dietary guild and season. The positive impact on FID was associated with time of the day and body size, while a negative association was observed with flock size, mean population density of humans and interaction between body size and elevation. Our study highlights the increased tolerance level of birds in urban areas, probably owing to habituation, and emphasizes the imperative need to investigate the potential adverse effect on urban bird population owing to this increased tolerance level.
{"title":"Flight initiation distance and bird tolerance to humans in rural and urban habitats.","authors":"Amrit Nepali, Hem Bahadur Katuwal, Sabin Kc, Sandeep Regmi, Hari Prasad Sharma","doi":"10.1098/rsos.240332","DOIUrl":"10.1098/rsos.240332","url":null,"abstract":"<p><p>Urbanization induces homogenization and changes the behavioural patterns of various bird species, thereby facilitating coexistence and prompting adaptations to disturbances in urban environments. However, there is limited research on the influence of how urbanization affects bird tolerance towards humans, especially in developing sub-tropical regions such as Nepal, which is undergoing rapid unplanned urbanization. This study identified the flight initiation distance (FID) as a proxy for assessing bird tolerance. We focused on evaluating the human tolerance levels of 33 bird species using their FIDs in urban and rural habitats within Kathmandu Valley, a rapidly urbanizing city in South Asia. We found higher tolerance in urban birds than in their rural conspecifics, which varies mainly with dietary guild and season. The positive impact on FID was associated with time of the day and body size, while a negative association was observed with flock size, mean population density of humans and interaction between body size and elevation. Our study highlights the increased tolerance level of birds in urban areas, probably owing to habituation, and emphasizes the imperative need to investigate the potential adverse effect on urban bird population owing to this increased tolerance level.</p>","PeriodicalId":21525,"journal":{"name":"Royal Society Open Science","volume":"11 10","pages":"240332"},"PeriodicalIF":2.9,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11461048/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142392989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}