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Narrowing down the conformational space with solid-state NMR in crystal structure prediction of linezolid cocrystals 利用固体核磁共振缩小利奈唑胺共晶的构象空间
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-10-01 DOI: 10.1016/j.ssnmr.2022.101813
Mehrnaz Khalaji, Piotr Paluch, Marek J. Potrzebowski, Marta K. Dudek

Many solids crystallize as microcrystalline powders, thus precluding the application of single crystal X-Ray diffraction in structural elucidation. In such cases, a joint use of high-resolution solid-state NMR and crystal structure prediction (CSP) calculations can be successful. However, for molecules showing significant conformational freedom, the CSP-NMR protocol can meet serious obstacles, including ambiguities in NMR signal assignment and too wide conformational search space to be covered by computational methods in reasonable time. Here, we demonstrate a possible way of avoiding these obstacles and making as much use of the two methods as possible in difficult circumstances. In a simple case, our experiments led to crystal structure elucidation of a cocrystal of linezolid (LIN), a wide-range antibiotic, with 2,3-dihydroxybenzoic acid, while a significantly more challenging case of a cocrystal of LIN with 2,4-dihydroxybenzoic acid led to the identification of the most probable conformations of LIN inside the crystal. Having four rotatable bonds, some of which can assume many discreet values, LIN molecule poses a challenge in establishing its conformation in a solid phase. In our work, a set of 27 conformations were used in CSP calculations to yield model crystal structures to be examined against experimental solid-state NMR data, leading to a reliable identification of the most probable molecular arrangements.

许多固体结晶为微晶粉末,因此阻碍了单晶x射线衍射在结构解析中的应用。在这种情况下,联合使用高分辨率固态核磁共振和晶体结构预测(CSP)计算可以取得成功。然而,对于具有显著构象自由度的分子,CSP-NMR协议可能会遇到严重的障碍,包括核磁共振信号分配的模糊性以及计算方法在合理的时间内无法覆盖太宽的构象搜索空间。在这里,我们展示了一种避免这些障碍的可能方法,并在困难的情况下尽可能多地使用这两种方法。在一个简单的案例中,我们的实验导致了宽范围抗生素利奈唑胺(LIN)与2,3-二羟基苯甲酸共晶的晶体结构的阐明,而一个更具挑战性的案例是LIN与2,4-二羟基苯甲酸共晶导致了LIN在晶体内最可能的构象的鉴定。LIN分子有四个可旋转的键,其中一些键可以假设许多离散值,这对确定其在固相中的构象提出了挑战。在我们的工作中,在CSP计算中使用了一组27种构象来产生模型晶体结构,以对照实验固态核磁共振数据进行检查,从而可靠地识别出最可能的分子排列。
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引用次数: 3
Solid-state NMR studies of metal ion and solvent influences upon the flexible metal-organic framework DUT-8 金属离子和溶剂对柔性金属-有机骨架DUT-8影响的固态核磁共振研究
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-08-01 DOI: 10.1016/j.ssnmr.2022.101809
Marcus Rauche , Sebastian Ehrling , Leila Abylgazina , Christopher Bachetzky , Irena Senkovska , Stefan Kaskel , Eike Brunner

Within the present contribution, we describe solid-state NMR spectroscopic studies of the paddle wheel unit in the prototypic flexible MOF compound DUT-8(M) (M = Ni, Co, Zn). The 13C NMR chemical shift of these carboxylates shows a remarkable behavior. The pure 2,6-H2ndc linker carboxylates as well as DUT-8(Zn) exhibit a13C chemical shift of only about 170 ppm. In contrast, much higher values are observed for DUT-8(Ni) and especially DUT-8(Co). In the open pore state, the shift strongly depends on the solvent polarity in these two latter cases. The present contribution elucidates the reason for this solvent influence. It is concluded that the solvent mainly modifies the isotropic Fermi contact coupling constant for the excited high-spin states in DUT-8(Ni) and DUT-8(Co).

在目前的贡献中,我们描述了原型柔性MOF化合物DUT-8(M) (M = Ni, Co, Zn)中桨轮单元的固态核磁共振光谱研究。这些羧酸盐的13C核磁共振化学位移表现出显著的行为。纯2,6- h2ndc连接剂羧酸盐和DUT-8(Zn)的13c化学位移仅为170 ppm左右。相比之下,DUT-8(Ni),特别是DUT-8(Co)的值要高得多。在开孔状态下,后两种情况下的位移强烈依赖于溶剂极性。目前的贡献阐明了溶剂影响的原因。结果表明,溶剂主要改变DUT-8(Ni)和DUT-8(Co)中激发高自旋态的各向同性费米接触耦合常数。
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引用次数: 2
Combining heteronuclear correlation NMR with spin-diffusion to detect relayed Cl–H–H and N–H–H proximities in molecular solids 结合异核相关核磁共振和自旋扩散检测分子固体中Cl-H-H和N-H-H - h邻近值
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-08-01 DOI: 10.1016/j.ssnmr.2022.101808
Parth Raval , Julien Trébosc , Tomasz Pawlak , Yusuke Nishiyama , Steven P. Brown , G.N. Manjunatha Reddy

Analysis of short-to-intermediate range intermolecular interactions offers a great way of characterizing the solid-state organization of small molecules and materials. This can be achieved by two-dimensional (2D) homo- and heteronuclear correlation NMR spectroscopy, for example, by carrying out experiments at high magnetic fields in conjunction with fast magic-angle spinning (MAS) techniques. But, detecting 2D peaks for heteronuclear dipolar coupled spin pairs separated by greater than 3 Å is not always straightforward, particularly when low-gamma quadrupolar nuclei are involved. Here, we present a 2D correlation NMR experiment that combines the advantages of heteronuclear-multiple quantum coherence (HMQC) and proton-based spin-diffusion (SD) pulse sequences using radio-frequency-driven-recouping (RFDR) to probe inter and intramolecular 1H-X (X = 14N, 35Cl) interactions. This experiment can be used to acquire 2D 1H{X}-HMQC filtered 1H–1H correlation as well as 2D 1H-X HMQC spectra. Powder forms of dopamine·HCl and l-histidine·HCl·H2O are characterized at high fields (21.1 T and 18.8 T) with fast MAS (60 kHz) using the 2D HMQC-SD-RFDR approach. Solid-state NMR results are complemented with NMR crystallography analyses using the gauge-including projector augmented wave (GIPAW) approach. For histidine·HCl·H2O, 2D peaks associated with 14N–1H–1H and 35Cl–1H–1H distances of up to 4.4 and 3.9 Å have been detected. This is further corroborated by the observation of 2D peaks corresponding to 14N–1H–1H and 35Cl–1H–1H distances of up to 4.2 and 3.7 Å in dopamine·HCl, indicating the suitability of the HMQC-SD-RFDR experiments for detecting medium-range proximities in molecular solids.

分析分子间的中短程相互作用为表征小分子和材料的固态组织提供了一种很好的方法。这可以通过二维(2D)同核和异核相关核磁共振波谱来实现,例如,通过在高磁场下与快速魔角旋转(MAS)技术相结合进行实验。但是,检测距离大于3 Å的异核偶极耦合自旋对的二维峰并不总是直截了当地,特别是当涉及低伽马四极核时。在这里,我们提出了一个二维相关核磁共振实验,结合了异核-多量子相干(HMQC)和基于质子的自旋扩散(SD)脉冲序列的优势,利用射频驱动补偿(RFDR)来探测分子间和分子内的1H-X (X = 14N, 35Cl)相互作用。本实验可获得经1H{X}-HMQC滤波后的二维1H- 1H相关光谱和二维1H-X HMQC光谱。采用二维HMQC-SD-RFDR方法,在高场(21.1 T和18.8 T)和快速MAS (60 kHz)下,对粉末形式的多巴胺·HCl和l-组氨酸·HCl·H2O进行了表征。固态核磁共振结果补充了核磁共振晶体学分析,使用包括投影仪增强波(GIPAW)方法。对于组氨酸·HCl·H2O,已检测到与14n - 1h和35cl - 1h距离达4.4和3.9 Å的2D峰。通过观察多巴胺·HCl中14n - 1h和35cl - 1h距离分别为4.2和3.7 Å的2D峰进一步证实了这一点,表明HMQC-SD-RFDR实验适用于检测分子固体中的中程距离。
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引用次数: 1
19F Solid-state NMR characterization of pharmaceutical solids 19F药物固体的固体核磁共振表征
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-08-01 DOI: 10.1016/j.ssnmr.2022.101796
Yong Du , Yongchao Su

Solid-state NMR has been increasingly recognized as a high-resolution and versatile spectroscopic tool to characterize drug substances and products. However, the analysis of pharmaceutical materials is often carried out at natural isotopic abundance and a relatively low drug loading in multi-component systems and therefore suffers from challenges of low sensitivity. The fact that fluorinated therapeutics are well represented in pipeline drugs and commercial products offers an excellent opportunity to utilize fluorine as a molecular probe for pharmaceutical analysis. We aim to review recent advancements of 19F magic angle spinning NMR methods in modern drug research and development. Applications to polymorph screening at the micromolar level, structural elucidation, and investigation of molecular interactions at the Ångström to submicron resolution in drug delivery, stability, and quality will be discussed.

固体核磁共振作为一种高分辨率和多用途的光谱工具,已越来越多地被认为是表征原料药和产品的工具。然而,药物材料的分析通常是在天然同位素丰度和多组分系统中相对较低的药物负荷下进行的,因此受到低灵敏度的挑战。氟化疗法在管道药物和商业产品中很有代表性,这一事实为利用氟作为分子探针进行药物分析提供了极好的机会。本文综述了19F魔角自旋核磁共振方法在现代药物研究和开发中的最新进展。将讨论在微摩尔水平上的多晶筛选、结构解析以及在Ångström到亚微米分辨率下分子相互作用在药物传递、稳定性和质量方面的应用。
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引用次数: 7
t1-noise elimination by continuous chemical shift anisotropy refocusing t1-连续化学位移各向异性重聚焦噪声消除
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-08-01 DOI: 10.1016/j.ssnmr.2022.101807
Frédéric A. Perras , Tian Wei Goh , Wenyu Huang

Due to their high gyromagnetic ratio, there is considerable interest in measuring distances and correlations involving protons, but such measurements are compounded by the simultaneous recoupling of chemical shift anisotropy (CSA). This secondary recoupling adds additional modulations to the signal intensities that ultimately lead to t1-noise and signal decay. Recently, Venkatesh et al. demonstrated that the addition of CSA refocusing periods during 1H-X dipolar recoupling led to sequences with far higher stability and performance. Herein, we describe a related effort and develop a symmetry-based recoupling sequence that continually refocuses the 1H CSA. This sequence shows superior performance to the regular and t1-noise eliminated D-HMQC sequences in the case of spin-1/2 nuclei and comparable performance to the later for half-integer quadrupoles.

由于它们的高回旋磁比,人们对测量涉及质子的距离和相关性有相当大的兴趣,但这种测量由于化学位移各向异性(CSA)的同时重新耦合而复杂化。这种二次重耦增加了信号强度的额外调制,最终导致t1噪声和信号衰减。最近,Venkatesh等人证明,在1H-X偶极重耦期间增加CSA重聚焦周期可以使序列具有更高的稳定性和性能。在这里,我们描述了一个相关的努力,并开发了一个基于对称的重偶联序列,不断地重新聚焦1H CSA。该序列在自旋为1/2核的情况下表现出优于常规和t1噪声消除的D-HMQC序列的性能,并且在半整数四极子的情况下表现出与后者相当的性能。
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引用次数: 3
High resolution solid state NMR in paramagnetic metal-organic frameworks 顺磁性金属-有机骨架的高分辨率固态核磁共振
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-08-01 DOI: 10.1016/j.ssnmr.2022.101811
C.A. Klug , M.W. Swift , J.B. Miller , J.L. Lyons , A. Albert , M. Laskoski , C.M. Hangarter

We study the metal-organic framework (MOF) ZIF-67 with 1H and 13C nuclear magnetic resonance (NMR). In addition to the usual orbital chemical shifts, we observe spinning sideband manifolds in the NMR spectrum due to hyperfine interactions of the paramagnetic cobalt with 1H and 13C. Both orbital and paramagnetic chemical shifts are in good agreement with values calculated from first principles, allowing high-confidence assignment of the observed peaks to specific sites within the MOF. Our measured resonance shifts, line shapes, and spin lattice relaxation rates are also consistent with calculated values. We show that molecules in the pores of the MOF can exhibit high-resolution NMR spectra with fast spin lattice relaxation rates due to dipole-dipole couplings to the Co2+ nodes in the ZIF-67 lattice, showcasing NMR spectroscopy as a powerful tool for identification and characterization of “guests” that may be hosted by the MOF in electrochemical and catalytic applications.

利用1H和13C核磁共振(NMR)对金属有机骨架(MOF) ZIF-67进行了研究。除了通常的轨道化学位移外,我们还在核磁共振光谱中观察到由于顺磁性钴与1H和13C的超精细相互作用而产生的自旋边带流形。轨道和顺磁化学位移都与第一性原理计算的值很好地吻合,从而可以高可信度地将观测到的峰分配到MOF内的特定位置。我们测量的共振位移、线形和自旋晶格弛豫率也与计算值一致。我们发现,由于与ZIF-67晶格中的Co2+节点的偶极子-偶极子耦合,MOF孔隙中的分子可以表现出高分辨率的核磁共振波谱,具有快速的自旋晶格弛化速率,这表明核磁共振波谱是识别和表征电化学和催化应用中可能由MOF宿主的“客人”的有力工具。
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引用次数: 1
Probing adsorption of water and DMF in UiO-66(Zr) using solid-state NMR 固体核磁共振探测UiO-66(Zr)对水和DMF的吸附
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-08-01 DOI: 10.1016/j.ssnmr.2022.101797
Florian Venel, Christophe Volkringer, Olivier Lafon, Frédérique Pourpoint
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引用次数: 1
Long single pulse NQR for broad resonance lines 宽共振线的长单脉冲NQR
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-08-01 DOI: 10.1016/j.ssnmr.2022.101810
T.C.L. Ly, R. Yong, D.G. Miljak

This paper describes the experimental application of long single pulses to strongly inhomogeneously broadened NQR spectral lines, where the pulse length significantly exceeds the transverse relaxation time. A63Cu NQR resonance in the mineral covellite (CuS) was used as an exemplar for study in this specific regime, which was motivated by the requirement to obtain useful signals in very large volume applications having radiofrequency power limitations. In this study, signal transients that followed the application of the long single pulses were measured over a large range of radiofrequency field strength and pulse width. The results indicate effective generation of signal amplitudes. This is in contrast to previously reported studies involving long pulses applied to relatively narrow resonances. The results are found to be well described by simulations of the modified Bloch equations.

本文描述了长单脉冲在强非均匀加宽NQR谱线上的实验应用,其中脉冲长度明显超过横向弛豫时间。该研究以矿物钴岩中A63Cu NQR共振为例进行了研究,其动机是在具有射频功率限制的非常大体积应用中获得有用信号的需求。在本研究中,在较大范围的射频场强和脉冲宽度范围内测量了长单脉冲应用后的信号瞬态。结果表明,有效地产生了信号幅度。这与先前报道的涉及将长脉冲应用于相对较窄共振的研究形成对比。对修正后的布洛赫方程进行了仿真,结果得到了很好的描述。
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引用次数: 0
Magic angle spinning dynamic nuclear polarization solid-state NMR spectroscopy of γ-irradiated molecular organic solids γ辐照有机分子固体的魔角自旋动态核极化固体核磁共振谱
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-06-01 DOI: 10.1016/j.ssnmr.2022.101785
Scott L. Carnahan , Yunhua Chen , James F. Wishart , Joseph W. Lubach , Aaron J. Rossini

In the past 15 years, magic angle spinning (MAS) dynamic nuclear polarization (DNP) has emerged as a method to increase the sensitivity of high-resolution solid-state NMR spectroscopy experiments. Recently, γ-irradiation has been used to generate significant concentrations of homogeneously distributed free radicals in a variety of solids, including quartz, glucose, and cellulose. Both γ-irradiated quartz and glucose previously showed significant MAS DNP enhancements. Here, γ-irradiation is applied to twelve small organic molecules to test the applicability of γ-irradiation as a general method of creating stable free radicals for MAS DNP experiments on organic solids and pharmaceuticals. Radical concentrations in the range of 0.25 ​mM–10 ​mM were observed in irradiated glucose, histidine, malic acid, and malonic acid, and significant 1H DNP enhancements of 32, 130, 19, and 11 were obtained, respectively, as measured by 1H→13C CPMAS experiments. However, concentrations of free radicals below 0.05 ​mM were generally observed in organic molecules containing aromatic rings, preventing sizeable DNP enhancements. DNP sensitivity gains for several of the irradiated compounds exceed that which can be obtained with the relayed DNP approach that uses exogeneous polarizing agent solutions and impregnation procedures. In several cases, significant 1H DNP enhancements were realized at room temperature. This study demonstrates that in many cases γ-irradiation is a viable alternative to addition of stable exogenous radicals for DNP experiments on organic solids.

在过去的15年中,魔角旋转(MAS)动态核极化(DNP)作为一种提高高分辨率固体核磁共振光谱实验灵敏度的方法出现了。最近,γ辐照已被用于在各种固体中产生显著浓度的均匀分布的自由基,包括石英、葡萄糖和纤维素。γ辐照石英和葡萄糖先前都显示出显著的MAS DNP增强。本研究将γ-辐照应用于12个小有机分子,以测试γ-辐照作为产生稳定自由基的一般方法在有机固体和药物的MAS DNP实验中的适用性。辐照葡萄糖、组氨酸、苹果酸和丙二酸的自由基浓度在0.25 mM - 10 mM范围内,1H→13C CPMAS实验测得1H DNP分别显著增强32、130、19和11。然而,在含有芳香环的有机分子中,自由基浓度通常低于0.05 mM,这阻碍了DNP的显著增强。几种辐照化合物的DNP灵敏度增益超过了使用外相极化剂溶液和浸渍程序的中继DNP方法所能获得的灵敏度增益。在一些情况下,在室温下实现了显著的1H DNP增强。本研究表明,在许多情况下,在有机固体上进行DNP实验时,γ辐照是一种可行的选择,而不是添加稳定的外源自由基。
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引用次数: 5
Multinuclear solid-state NMR: Unveiling the local structure of defective MOF MIL-120 多核固体核磁共振:揭示缺陷MIL-120的局部结构
IF 3.2 3区 化学 Q1 Physics and Astronomy Pub Date : 2022-06-01 DOI: 10.1016/j.ssnmr.2022.101793
Wanli Zhang , Shoushun Chen , Victor V. Terskikh , Bryan E.G. Lucier , Yining Huang

Metal-organic frameworks (MOFs) are emerging materials with many current and potential applications due to their unique properties. One critical feature is that the physical and chemical properties of MOFs are tunable. One of the methods for tuning MOF properties is to introduce defects by design for desired applications. Characterization of MOF defects is important, but very challenging due to the local nature and short-range ordering. In this work, we have introduced the ordered vacancies (the defects) in the form of the coordinatively unsaturated sites (CUSs) into the framework of MOF MIL-120(Al). The creation of ordered vacancies is achieved by replacing one quarter of the BTEC (1,2,4,5-benzenetetracarboxylate) with BDC (benzene-1,4-dicarboxylate) linkers. Both parent and defective MOFs were characterized by multinuclear solid-state NMR spectroscopy. 1H MAS NMR is used to characterize the hydrogen bonding in these MOFs, whereas 13C CP MAS NMR confirms unambiguously that the BDC is incorporated into the framework. One-dimensional 27Al MAS NMR provides direct evidence of the coordinatively unsaturated Al sites (the defects). Furthermore, 27Al 3QMAS experiments at 21.1 ​T allow direct identification of one penta-coordinated and three chemically inequivalent octahedral Al sites in the defective MIL-120(Al). Two of the above-mentioned octahedral Al sites are in the domain which appears defect-free. The third octahedral Al site is near the defective site. This work clearly demonstrates the power of solid-state NMR spectroscopy for characterization of defective MOFs.

金属有机骨架(MOFs)是一种新兴材料,由于其独特的性能,具有广泛的应用前景。mof的一个关键特征是其物理和化学性质是可调的。调整MOF特性的方法之一是通过设计引入缺陷以满足所需的应用。MOF缺陷的表征是很重要的,但由于局部性质和短程有序,非常具有挑战性。在这项工作中,我们将协调不饱和位(CUSs)形式的有序空位(缺陷)引入MOF MIL-120(Al)的框架中。通过用BDC(苯-1,4-二羧酸酯)连接剂取代四分之一的BTEC(1,2,4,5-苯四羧酸酯)来实现有序空位的产生。母mof和缺陷mof都用多核固体核磁共振光谱进行了表征。1H MAS NMR用于表征这些mof中的氢键,而13C CP MAS NMR明确证实BDC被纳入框架。一维27Al MAS NMR提供了配位不饱和Al位(缺陷)的直接证据。此外,21.1 T的27Al 3QMAS实验允许在缺陷MIL-120(Al)中直接识别一个五配位和三个化学不平等的八面体Al位点。上述八面体Al中有两个位点处于无缺陷的区域。第三个八面体Al位点在缺陷位点附近。这项工作清楚地证明了固态核磁共振光谱表征缺陷mof的能力。
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引用次数: 1
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Solid state nuclear magnetic resonance
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