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Powerful combination: a genome editing system to improve efficiency of breeding inducer and haploid sorting in maize 强强联合:提高玉米育种诱导剂和单倍体分选效率的基因组编辑系统
IF 13.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-10 DOI: 10.1111/pbi.14515
Hanchao Xia, Yanzhi Qu, Yuejia Yin, Chuang Zhang, Ziqi Chen, Shurong Jiang, Di Zhang, Xinqi Wang, Rengui Zhao, Jieting Xu, Xiangguo Liu
<p>Double haploid (DH) technology can be used to rapidly develop homozygous lines (Geiger and Gordillo, <span>2009</span>). As the fundamental component of DH technology, the traditional inducer lines were developed through a process of recurrent selection over multiple generations, a method that was inherently time-consuming. The advent of gene editing technology has facilitated the creation of inducer lines in an efficient manner (Kelliher <i>et al</i>., <span>2017</span>; Zhong <i>et al</i>., <span>2019</span>). However, these inducer lines lack sort markers for sorting haploid, and the introduction of genetic markers is achieved through hybridization (Yu and Birchler, <span>2016</span>). Though anthocyanin marker or oil content has been primarily used for sorting haploid (Qu <i>et al</i>., <span>2021</span>), there is a notable discrepancy in the false discrimination rate for manual or automated sorting due to the influence of anthocyanin expression. The NMR system can enhance the haploid correct discrimination rate (CDR), but the equipment is expensive. Fluorescent markers represent another type of genetic markers for the sorting of haploids; however, the fluorescent is not visible to the naked eyes (Dong <i>et al</i>., <span>2018</span>). Consequently, the current genetic markers exhibit delayed coloration (Chen <i>et al</i>., <span>2022</span>; Wang <i>et al</i>., <span>2023</span>), which limits the application of DH technology.</p><p>In this study, we developed a Cas9 system for breeding inducer and sorting haploid in maize, with three advantages: (i) we innovatively employed a promoter p<i>OsBBM1</i> to drive Cas9 in maize, which does not yield new edits in haploid progeny, (ii) this technique integrates the promoters p<i>OsBBM1</i>, <i>DsRed2</i> and elements capable of targeted editing of two induction genes (<i>ZmPLA1</i> + <i>ZmDMP</i>) at the same time into the same vector. This approach facilitates the efficient generation of inducer lines without Cas9 and with the DsRed2 marker through a single genetic transformation step. Furthermore, it improves the breeding efficiency of haploid inducer lines in different maize backgrounds and reduces cost and (iii) the DsRed2 protein exhibits specific expression in the embryo which is visible to the naked eye. This allows for the efficient sorting of haploid at various stages of seed development, which is independent of the genetic background.</p><p>We selected a promoter to drive Cas9 expression highly only in rice callus (Figure S1), while the embryo-specific promoter p<i>ZmESP</i> was utilized to drive maize codon-optimized <i>DsRed2</i> (MoDsRed2) expression, supplemented with the CaMV35S enhancer for visible to the naked eye in natural light (Xu <i>et al</i>., <span>2021</span>). During the experimental process, we observed that the promoter p<i>OsBBM1</i> activity in the callus tissue exclusively (Figure 1k). Therefore, we proposed to use this vector to generate an inducer line with r
观察从授粉后 3 天开始,然后每隔 4-5 天评估一次,直至谷物成熟。在授粉后 23-35 天和 33 天,分别观察到花青素在胚乳黑质层和胚中表达(图 S4)。此外,在成熟谷粒阶段,在不同的遗传背景下,通过 MoDsRed2 标记,在激发光和自然光条件下,各种材料的单倍体 CDR 都超过了 99%(图 1g,j)。相反,花青素标记则受到热带种质遗传背景差异的影响,导致不同背景材料的准确率仅为 83.3%(表 S2)。最初,该设备采用 R1-nj 进行分选,并在不同材料上进行了测试。结果表明,单倍体 CDR 为 94.9%,二倍体正确剔除率 (CRR) 为 98.2%(表 S3)。随后,我们利用 MoDsRed2 标记对郑58 进行了分选测试,结果显示单倍体 CDR 为 99.7%,二倍体 CRR 为 99.8%(表 S4)。裸眼可见的胚胎颜色标记有助于在种子发育的不同阶段快速、精确地分选单倍体,有利于组织培养倍增技术中的早期胚胎鉴定,并有助于单倍体形成机制的研究(图 1o)。自动化分选设备的使用大大提高了分选效率,从每天 20 000 粒提高到每小时 20 000 粒。便携式荧光激发光设备在暗室筛选中用于分拣单倍体,单倍体 CDR 为 99.7%。硬件开发完成后,预计 CDR 将达到 100%,分选效率将超过每小时 24 000 粒。
{"title":"Powerful combination: a genome editing system to improve efficiency of breeding inducer and haploid sorting in maize","authors":"Hanchao Xia, Yanzhi Qu, Yuejia Yin, Chuang Zhang, Ziqi Chen, Shurong Jiang, Di Zhang, Xinqi Wang, Rengui Zhao, Jieting Xu, Xiangguo Liu","doi":"10.1111/pbi.14515","DOIUrl":"https://doi.org/10.1111/pbi.14515","url":null,"abstract":"&lt;p&gt;Double haploid (DH) technology can be used to rapidly develop homozygous lines (Geiger and Gordillo, &lt;span&gt;2009&lt;/span&gt;). As the fundamental component of DH technology, the traditional inducer lines were developed through a process of recurrent selection over multiple generations, a method that was inherently time-consuming. The advent of gene editing technology has facilitated the creation of inducer lines in an efficient manner (Kelliher &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2017&lt;/span&gt;; Zhong &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2019&lt;/span&gt;). However, these inducer lines lack sort markers for sorting haploid, and the introduction of genetic markers is achieved through hybridization (Yu and Birchler, &lt;span&gt;2016&lt;/span&gt;). Though anthocyanin marker or oil content has been primarily used for sorting haploid (Qu &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2021&lt;/span&gt;), there is a notable discrepancy in the false discrimination rate for manual or automated sorting due to the influence of anthocyanin expression. The NMR system can enhance the haploid correct discrimination rate (CDR), but the equipment is expensive. Fluorescent markers represent another type of genetic markers for the sorting of haploids; however, the fluorescent is not visible to the naked eyes (Dong &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2018&lt;/span&gt;). Consequently, the current genetic markers exhibit delayed coloration (Chen &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2022&lt;/span&gt;; Wang &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2023&lt;/span&gt;), which limits the application of DH technology.&lt;/p&gt;\u0000&lt;p&gt;In this study, we developed a Cas9 system for breeding inducer and sorting haploid in maize, with three advantages: (i) we innovatively employed a promoter p&lt;i&gt;OsBBM1&lt;/i&gt; to drive Cas9 in maize, which does not yield new edits in haploid progeny, (ii) this technique integrates the promoters p&lt;i&gt;OsBBM1&lt;/i&gt;, &lt;i&gt;DsRed2&lt;/i&gt; and elements capable of targeted editing of two induction genes (&lt;i&gt;ZmPLA1&lt;/i&gt; + &lt;i&gt;ZmDMP&lt;/i&gt;) at the same time into the same vector. This approach facilitates the efficient generation of inducer lines without Cas9 and with the DsRed2 marker through a single genetic transformation step. Furthermore, it improves the breeding efficiency of haploid inducer lines in different maize backgrounds and reduces cost and (iii) the DsRed2 protein exhibits specific expression in the embryo which is visible to the naked eye. This allows for the efficient sorting of haploid at various stages of seed development, which is independent of the genetic background.&lt;/p&gt;\u0000&lt;p&gt;We selected a promoter to drive Cas9 expression highly only in rice callus (Figure S1), while the embryo-specific promoter p&lt;i&gt;ZmESP&lt;/i&gt; was utilized to drive maize codon-optimized &lt;i&gt;DsRed2&lt;/i&gt; (MoDsRed2) expression, supplemented with the CaMV35S enhancer for visible to the naked eye in natural light (Xu &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2021&lt;/span&gt;). During the experimental process, we observed that the promoter p&lt;i&gt;OsBBM1&lt;/i&gt; activity in the callus tissue exclusively (Figure 1k). Therefore, we proposed to use this vector to generate an inducer line with r","PeriodicalId":221,"journal":{"name":"Plant Biotechnology Journal","volume":"539 1","pages":""},"PeriodicalIF":13.8,"publicationDate":"2024-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142597549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ZmHSFA2B self-regulatory loop is critical for heat tolerance in maize ZmHSFA2B 自我调节环路对玉米的耐热性至关重要
IF 13.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-10 DOI: 10.1111/pbi.14497
Nannan Song, Jing Wang, Qianqian Qin, Anqi Su, Yifeng Cheng, Weina Si, Beijiu Cheng, Jun Fan, Haiyang Jiang
The growth and development of maize (Zea mays L.) are significantly impeded by prolonged exposure to high temperatures. Heat stress transcription factors (HSFs) play crucial roles in enabling plants to detect and respond to elevated temperatures. However, the genetic mechanisms underlying the responses of HSFs to heat stress in maize remain unclear. Thus, we aimed to investigate the role of ZmHSFA2B in regulating heat tolerance in maize. Here, we report that ZmHSFA2B has two splicing variants, ZmHSFA2B-I and ZmHSFA2B-II. ZmHSFA2B-I encodes full-length ZmHSFA2B (ZmHSFA2B-I), whereas ZmHSFA2B-II encodes a truncated ZmHSFA2B (ZmHSFA2B-II). Overexpression of ZmHSFA2B-I improved heat tolerance in maize and Arabidopsis thaliana, but it also resulted in growth retardation as a side effect. RNA-sequencing and CUT&Tag analyses identified ZmMBR1 as a putative target of ZmHSFA2B-I. Overexpression of ZmMBR1 also enhanced heat tolerance in Arabidopsis. ZmHSFA2B-II was primarily synthesized in response to heat stress and competitively interacted with ZmHSFA2B-I. This interaction consequently reduced the DNA-binding activities of ZmHSFA2B-I homodimers to the promoter of ZmMBR1. Subsequent investigations indicate that ZmHSFA2B-II limits the transactivation and tempers the function of ZmHSFA2B-I, thereby reducing the adverse effects of excessive ZmHSFA2B-I accumulation. Based on these observations, we propose that the alternative splicing of ZmHSFA2B generates a self-regulatory loop that fine-tunes heat stress response in maize.
玉米(Zea mays L.)的生长和发育会因长期暴露在高温下而受到严重阻碍。热胁迫转录因子(HSFs)在植物检测和应对高温方面起着至关重要的作用。然而,玉米中 HSFs 对热胁迫反应的遗传机制仍不清楚。因此,我们旨在研究 ZmHSFA2B 在调控玉米耐热性中的作用。在这里,我们报告了 ZmHSFA2B 有两个剪接变体,即 ZmHSFA2B-I 和 ZmHSFA2B-II。ZmHSFA2B-I 编码全长的 ZmHSFA2B(ZmHSFA2B-I),而 ZmHSFA2B-II 编码截短的 ZmHSFA2B(ZmHSFA2B-II)。过量表达 ZmHSFA2B-I 提高了玉米和拟南芥的耐热性,但也会导致生长迟缓。RNA 测序和 CUT&Tag 分析确定 ZmMBR1 为 ZmHSFA2B-I 的假定靶标。ZmMBR1 的过表达也增强了拟南芥的耐热性。ZmHSFA2B-II 主要在应对热胁迫时合成,并与 ZmHSFA2B-I 发生竞争性相互作用。这种相互作用降低了 ZmHSFA2B-I 同源二聚体与 ZmMBR1 启动子的 DNA 结合活性。随后的研究表明,ZmHSFA2B-II 限制了 ZmHSFA2B-I 的转录活化并缓和了其功能,从而减少了 ZmHSFA2B-I 过度积累的不利影响。基于这些观察结果,我们认为 ZmHSFA2B 的替代剪接产生了一个自我调节环,可对玉米的热胁迫反应进行微调。
{"title":"ZmHSFA2B self-regulatory loop is critical for heat tolerance in maize","authors":"Nannan Song, Jing Wang, Qianqian Qin, Anqi Su, Yifeng Cheng, Weina Si, Beijiu Cheng, Jun Fan, Haiyang Jiang","doi":"10.1111/pbi.14497","DOIUrl":"https://doi.org/10.1111/pbi.14497","url":null,"abstract":"The growth and development of maize (<i>Zea mays</i> L.) are significantly impeded by prolonged exposure to high temperatures. Heat stress transcription factors (HSFs) play crucial roles in enabling plants to detect and respond to elevated temperatures. However, the genetic mechanisms underlying the responses of HSFs to heat stress in maize remain unclear. Thus, we aimed to investigate the role of <i>ZmHSFA2B</i> in regulating heat tolerance in maize. Here, we report that <i>ZmHSFA2B</i> has two splicing variants, <i>ZmHSFA2B-I</i> and <i>ZmHSFA2B-II</i>. <i>ZmHSFA2B-I</i> encodes full-length ZmHSFA2B (ZmHSFA2B-I), whereas Zm<i>HSFA2B-II</i> encodes a truncated ZmHSFA2B (ZmHSFA2B-II). Overexpression of <i>ZmHSFA2B-I</i> improved heat tolerance in maize and <i>Arabidopsis thaliana</i>, but it also resulted in growth retardation as a side effect. RNA-sequencing and CUT&amp;Tag analyses identified <i>ZmMBR1</i> as a putative target of ZmHSFA2B-I. Overexpression of <i>ZmMBR1</i> also enhanced heat tolerance in Arabidopsis. ZmHSFA2B-II was primarily synthesized in response to heat stress and competitively interacted with ZmHSFA2B-I. This interaction consequently reduced the DNA-binding activities of ZmHSFA2B-I homodimers to the promoter of <i>ZmMBR1</i>. Subsequent investigations indicate that ZmHSFA2B-II limits the transactivation and tempers the function of ZmHSFA2B-I, thereby reducing the adverse effects of excessive ZmHSFA2B-I accumulation. Based on these observations, we propose that the alternative splicing of <i>ZmHSFA2B</i> generates a self-regulatory loop that fine-tunes heat stress response in maize.","PeriodicalId":221,"journal":{"name":"Plant Biotechnology Journal","volume":"13 1","pages":""},"PeriodicalIF":13.8,"publicationDate":"2024-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142597547","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPR/Cas9‐mediated OsFd1 editing enhances rice broad‐spectrum resistance without growth and yield penalty CRISPR/Cas9 介导的 OsFd1 编辑可增强水稻的广谱抗性,而不会影响生长和产量
IF 13.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-08 DOI: 10.1111/pbi.14512
Hua Shi, Jinhui Chen, Minfeng Lu, Wenyan Li, Wanjun Deng, Ping Kang, Xi Zhang, Qiong Luo, Mo Wang
<p>Ferredoxins (Fds), a category of small iron-sulphur [2Fe-2S] cluster-containing proteins, localize in plastids and are required for distributing electrons from photosystem I (PSI) to downstream metabolic reactions (Hanke and Mulo, <span>2013</span>). Based on their expression pattern and redox potential, Fds in higher plants are classified into leaf (photosynthetic) and root (non-photosynthetic) types. In rice, five typical <i>Fd</i> genes have been identified, among which <i>OsFd1</i> encodes the primary photosynthetic Fd. Knockout of <i>OsFd1</i> caused rice lethal at seedling stage (He <i>et al</i>., <span>2020</span>), indicating an essential role of OsFd1 in rice photosynthetic electron transport.</p><p>We recently reported that knockout of <i>OsFd4</i>, the major rice non-photosynthetic type Fd, increased rice resistance against the blight bacteria <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> (<i>Xoo</i>) (Lu <i>et al</i>., <span>2023</span>). To determine the immune function of OsFd1 and the possibility of <i>OsFd1</i> to be a target for genomic modification to enhance rice resistance, we performed CRISPR/Cas9-mediated <i>OsFd1</i> editing in Zhonghua 11 (ZH11) and obtained two loss-of-function alleles <i>Osfd1-1</i> and <i>Osfd1-2</i> carrying a 5-bp deletion and 1-bp insertion, respectively, in the coding region (Figure 1a). Consistent with the previous report (He <i>et al</i>., <span>2020</span>), both alleles were lethal at young seedling stage under the 12-h light/dark cycle condition (Figure 1b). However, when grown under constant dark, the etiolated seedlings of <i>Osfd1-1</i> and <i>Osfd1-2</i> grew similarly as ZH11 (Figure 1b), indicating that the lethality of <i>Osfd1</i> is light-dependent. We also found that <i>OsFd1</i> transcript levels and OsFd1 protein abundance were significantly increased under light (Figure S1). When the leaves detached from 10-day-old ZH11 and <i>Osfd1-1</i> seedlings grown under light cycle were stained with H<sub>2</sub>DCFDA, a visible cellular indicator for reactive oxygen species (ROS), clear fluorescent signals were observed in the chloroplasts of <i>Osfd1-1</i>, but not in those of ZH11 (Figure 1c), indicating that <i>OsFd1</i> deletion leads to constitutive ROS accumulation in chloroplasts. Similar to Arabidopsis <i>Fd2</i>-knockout mutant, both <i>Osfd1-1</i> and <i>Osfd1-2</i> accumulated significantly higher basal levels of jasmonic acid (JA) and JA-Ile than ZH11 (Figure 1d and Figure S2).</p><figure><picture><source media="(min-width: 1650px)" srcset="/cms/asset/345ee1bc-8890-439c-9f62-b42d8b506f6f/pbi14512-fig-0001-m.jpg"/><img alt="Details are in the caption following the image" data-lg-src="/cms/asset/345ee1bc-8890-439c-9f62-b42d8b506f6f/pbi14512-fig-0001-m.jpg" loading="lazy" src="/cms/asset/bf1e9759-98e2-496a-84ca-546c30936d94/pbi14512-fig-0001-m.png" title="Details are in the caption following the image"/></picture><figcaption><div><strong>Figure 1<span style="font-weight:normal
铁氧化还原蛋白(Fds)是一类含铁硫[2Fe-2S]簇的小蛋白,定位于质体,需要将电子从光合系统 I(PSI)分配到下游代谢反应中(Hanke 和 Mulo,2013 年)。根据其表达模式和氧化还原电位,高等植物中的 Fds 可分为叶(光合)和根(非光合)类型。在水稻中,已经发现了五个典型的 Fd 基因,其中 OsFd1 编码主要的光合 Fd。我们最近报道,敲除主要的水稻非光合型 Fd--OsFd4,可提高水稻对枯萎病菌 Xanthomonas oryzae pv. oryzae(Xoo)的抗性(Lu 等,2023)。为了确定 OsFd1 的免疫功能以及 OsFd1 成为基因组改造靶标以增强水稻抗性的可能性,我们在中华 11 号(ZH11)中进行了 CRISPR/Cas9 介导的 OsFd1 编辑,获得了两个功能缺失等位基因 Osfd1-1 和 Osfd1-2,编码区分别带有 5-bp 缺失和 1-bp 插入(图 1a)。与之前的报告(He 等,2020)一致,在 12 小时光照/黑暗循环条件下,这两个等位基因在幼苗期都是致死的(图 1b)。然而,在恒定黑暗条件下生长时,Osfd1-1 和 Osfd1-2 的幼苗与 ZH11 生长相似(图 1b),表明 Osfd1 的致死性是光依赖性的。我们还发现,OsFd1 的转录水平和 OsFd1 蛋白丰度在光照下显著增加(图 S1)。用可见的细胞活性氧(ROS)指示剂 H2DCFDA 对在光周期下生长 10 天的 ZH11 和 Osfd1-1 幼苗的叶片进行染色,在 Osfd1-1 的叶绿体中观察到清晰的荧光信号,而在 ZH11 的叶绿体中观察不到(图 1c),这表明 OsFd1 的缺失会导致叶绿体中组成型 ROS 的积累。与拟南芥 Fd2-基因敲除突变体类似,Osfd1-1 和 Osfd1-2 积累的茉莉酸(JA)和 JA-Ile 的基础水平都明显高于 ZH11(图 1d 和图 S2)。(a) Osfd1-1 和 Osfd1-2 中 OsFd1 的突变位点。(b) Osfd1-1 和 Osfd1-2 幼苗的致死率与光照有关。条 = 5 厘米。(c) 通过 H2DCFDA 检测,Osfd1-1 在叶绿体中连续积累 ROS。AF,叶绿体自发荧光。条距 = 20 μm。(d) Osfd1-1 积累的 JA 和 JA-Ile 基础水平明显高于 WT(平均值 ± SD,n = 3)。FW,鲜重。(e)Osfd1-3 和 Osfd1-4 中 OsFd1 的突变位点及被删除氨基酸的示意图。CSP,叶绿体定位信号肽。(f) Osfd1-3 和 Osfd1-4 突变体表现出类似 WT 的生长。条 = 10 厘米。(g)ZH11、Osfd1-3 和 Osfd1-4 的病叶在打孔接种了 M. oryzae 分离物 Guy11 的分生孢子后。 h)真菌生物量分析表明,Osfd1-4 支持的 M. oryzae 生长量明显少于 WT 和 Osfd1-3。数据为平均值 ± SD(n = 3,每组不同植株的两片接种叶片)。(i) ZH11、Osfd1-3 和 Osfd1-4 接种 Xoo 菌株 Pxo86 后的病叶。条 = 3 厘米。(j、k)与 ZH11 和 Osfd1-3 相比,Osfd1-4 的病斑长度(j)较短,支持 Xoo 细菌生长的程度(k)较低。条形图表示平均值 ± SD,(j) 中 n = 6,(k) 中 n = 3(每组两片叶子)。Cfu,菌落形成单位。(l)Osfd1-4 突变体中几丁质和 flg22 诱导的 ROS 爆发增强。误差条代表 SE(n = 8)。(m)Y2H 分析表明,与 OsFd1 和 OsFd1Δ1aa 相比,OsFd1Δ5aa 的自身相互作用被破坏。(n)H2DCFDA 染色表明 Osfd1-4 叶绿体中 ROS 积累较弱。条 = 20 μm。图中差异有统计学意义(*P &lt; 0.05, **P &lt; 0.01, ns 表示无意义)。为了研究OsFd1在水稻防御中的功能,我们将OsFd1-overexpression(OE)构建体转化到杂合子Osfd1-1的胼胝体中,在同源Osfd1-1背景下获得了两个独立的OEOsFd1转基因品系(Osfd1-1 OEOsFd1,图S3a)。OEOsFd1 完全挽救了 Osfd1-1 的幼苗致死表型(图 S3b,c)。当接种稻瘟病真菌 Magnaporthe oryzae(M. oryzae)时,Osfd1-1 OEOsFd1 株系比 ZH11 株系支持更多的 M. oryzae 生长(图 S3d)。然后,我们用 Xoo 挑战 Osfd1-1 OEOsFd1 株系,发现这两个株系的枯萎病病斑明显更长(图 S3e,f),支持更多的 Xoo 生长(图 S3g),表明 OEOsFd1 削弱了水稻对病原体的防御能力。 此外,与 ZH11 相比,OEOsFd1 株系中几丁质和 flg22 诱导的 ROS 爆发严重减少(图 S4)。总之,我们的数据表明,OsFd1 在水稻抵御病原体的过程中起着负面作用。OsFd1 的功能缺失导致的幼苗致死限制了其在水稻抗病育种中的应用。因此,我们试图找出 Osfd1 的弱等位基因,使其在不影响生长的情况下赋予水稻稳健的抗性。通过进一步筛选 CRISPR/Cas9 介导的编辑后代,我们发现了另外两个同源的 Osfd1 等位基因 Osfd1-3 和 Osfd1-4,它们分别含有 3-bp 和 15-bp 的框内缺失。这两个突变体被命名为 OsFd1Δ3bp 和 OsFd1Δ15bp,分别缺失 1 个和 5 个氨基酸(图 1e)。值得注意的是,这两个突变体的生长与 WT 相似,农艺性状没有明显缺陷(图 1f 和图 S5)。与 ZH11 相比,当受到 M. oryzae 和 Xoo 菌株的侵染时,Osfd1-4 而不是 Osfd1-3 的抗性明显增强(图 1g-k,图 S6)。OsFd1变体 OsFd1Δ1aa 和 OsFd1Δ5aa 的叶绿体定位信号肽(CSP)和保守的[2Fe-2S]簇之间的氨基酸缺失(图 1e),不会破坏其叶绿体定位(图 S7)。Fds 可形成功能性二聚体,以促进电子携带和传递(Hasan 等人,2002 年;Iwasaki 等人,2011 年;Lu 等人,2023 年)。我们的酵母双杂交实验表明 OsFd1 有很强的自相互作用(图 S8)。有趣的是,OsFd1Δ5aa(而不是 OsFd1Δ1aa)的自结合能力明显下降(图 1m),这表明 OsFd1Δ5aa 中的五氨基酸缺失可能会影响 OsFd1 的二聚化,降低电子传递的效率。为了研究 OsFd1Δ15bp 在水稻抗性育种中的潜力,我们用商业常规粳稻品种 NG9108(雌性亲本)与 Osfd1-4(雄性亲本)杂交,得到了 F2 群体。所有受试 F2 植株均正常生长(图 S9a),表明 OsFd1Δ15bp 突变对不同遗传背景下的生长没有影响。当 F2 后代接种与 NG9108 和 ZH11 毒力相似的 M. oryzae 菌株 YN-5 时,与携带野生型 OsFd1 或杂合 OsFd1/Os
{"title":"CRISPR/Cas9‐mediated OsFd1 editing enhances rice broad‐spectrum resistance without growth and yield penalty","authors":"Hua Shi, Jinhui Chen, Minfeng Lu, Wenyan Li, Wanjun Deng, Ping Kang, Xi Zhang, Qiong Luo, Mo Wang","doi":"10.1111/pbi.14512","DOIUrl":"https://doi.org/10.1111/pbi.14512","url":null,"abstract":"&lt;p&gt;Ferredoxins (Fds), a category of small iron-sulphur [2Fe-2S] cluster-containing proteins, localize in plastids and are required for distributing electrons from photosystem I (PSI) to downstream metabolic reactions (Hanke and Mulo, &lt;span&gt;2013&lt;/span&gt;). Based on their expression pattern and redox potential, Fds in higher plants are classified into leaf (photosynthetic) and root (non-photosynthetic) types. In rice, five typical &lt;i&gt;Fd&lt;/i&gt; genes have been identified, among which &lt;i&gt;OsFd1&lt;/i&gt; encodes the primary photosynthetic Fd. Knockout of &lt;i&gt;OsFd1&lt;/i&gt; caused rice lethal at seedling stage (He &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2020&lt;/span&gt;), indicating an essential role of OsFd1 in rice photosynthetic electron transport.&lt;/p&gt;\u0000&lt;p&gt;We recently reported that knockout of &lt;i&gt;OsFd4&lt;/i&gt;, the major rice non-photosynthetic type Fd, increased rice resistance against the blight bacteria &lt;i&gt;Xanthomonas oryzae&lt;/i&gt; pv. &lt;i&gt;oryzae&lt;/i&gt; (&lt;i&gt;Xoo&lt;/i&gt;) (Lu &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2023&lt;/span&gt;). To determine the immune function of OsFd1 and the possibility of &lt;i&gt;OsFd1&lt;/i&gt; to be a target for genomic modification to enhance rice resistance, we performed CRISPR/Cas9-mediated &lt;i&gt;OsFd1&lt;/i&gt; editing in Zhonghua 11 (ZH11) and obtained two loss-of-function alleles &lt;i&gt;Osfd1-1&lt;/i&gt; and &lt;i&gt;Osfd1-2&lt;/i&gt; carrying a 5-bp deletion and 1-bp insertion, respectively, in the coding region (Figure 1a). Consistent with the previous report (He &lt;i&gt;et al&lt;/i&gt;., &lt;span&gt;2020&lt;/span&gt;), both alleles were lethal at young seedling stage under the 12-h light/dark cycle condition (Figure 1b). However, when grown under constant dark, the etiolated seedlings of &lt;i&gt;Osfd1-1&lt;/i&gt; and &lt;i&gt;Osfd1-2&lt;/i&gt; grew similarly as ZH11 (Figure 1b), indicating that the lethality of &lt;i&gt;Osfd1&lt;/i&gt; is light-dependent. We also found that &lt;i&gt;OsFd1&lt;/i&gt; transcript levels and OsFd1 protein abundance were significantly increased under light (Figure S1). When the leaves detached from 10-day-old ZH11 and &lt;i&gt;Osfd1-1&lt;/i&gt; seedlings grown under light cycle were stained with H&lt;sub&gt;2&lt;/sub&gt;DCFDA, a visible cellular indicator for reactive oxygen species (ROS), clear fluorescent signals were observed in the chloroplasts of &lt;i&gt;Osfd1-1&lt;/i&gt;, but not in those of ZH11 (Figure 1c), indicating that &lt;i&gt;OsFd1&lt;/i&gt; deletion leads to constitutive ROS accumulation in chloroplasts. Similar to Arabidopsis &lt;i&gt;Fd2&lt;/i&gt;-knockout mutant, both &lt;i&gt;Osfd1-1&lt;/i&gt; and &lt;i&gt;Osfd1-2&lt;/i&gt; accumulated significantly higher basal levels of jasmonic acid (JA) and JA-Ile than ZH11 (Figure 1d and Figure S2).&lt;/p&gt;\u0000&lt;figure&gt;&lt;picture&gt;\u0000&lt;source media=\"(min-width: 1650px)\" srcset=\"/cms/asset/345ee1bc-8890-439c-9f62-b42d8b506f6f/pbi14512-fig-0001-m.jpg\"/&gt;&lt;img alt=\"Details are in the caption following the image\" data-lg-src=\"/cms/asset/345ee1bc-8890-439c-9f62-b42d8b506f6f/pbi14512-fig-0001-m.jpg\" loading=\"lazy\" src=\"/cms/asset/bf1e9759-98e2-496a-84ca-546c30936d94/pbi14512-fig-0001-m.png\" title=\"Details are in the caption following the image\"/&gt;&lt;/picture&gt;&lt;figcaption&gt;\u0000&lt;div&gt;&lt;strong&gt;Figure 1&lt;span style=\"font-weight:normal","PeriodicalId":221,"journal":{"name":"Plant Biotechnology Journal","volume":"80 1","pages":""},"PeriodicalIF":13.8,"publicationDate":"2024-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142597601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SlMYC2-SlMYB12 module orchestrates a hierarchical transcriptional cascade that regulates fruit flavonoid metabolism in tomato. SlMYC2-SlMYB12模块协调调控番茄果实类黄酮代谢的分级转录级联。
IF 10.1 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-07 DOI: 10.1111/pbi.14510
Heng Deng, Mengbo Wu, Yi Wu, Xiangxia Xiao, Zhuo Gao, Huirong Li, Nan Hu, Yongfeng Gao, Don Grierson, Mingchun Liu
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引用次数: 0
A visible seedling-stage screening system for the Brassica napus hybrid breeding by a novel hypocotyl length-regulated gene BnHL 利用新型下胚轴长度调控基因 BnHL 培育甘蓝型油菜杂交种的可视苗期筛选系统
IF 13.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-06 DOI: 10.1111/pbi.14507
Jingyan Fu, Ying Zhang, Meng Yin, Sha Liu, Ziyue Xu, Mingting Wu, Zihan Ni, Peiyao Li, Ruijia Zhu, Guangqin Cai, Maolin Wang, Rui Wang
Rapeseed (Brassica napus) is a globally significant oilseed crop with strong heterosis performance. Recessive genic male sterility (RGMS) is one of the key approaches for utilizing heterosis in B. napus. However, this method faces the inherent challenge of being time-consuming and labour-intensive for removing fertile plants during seed production. Here, we report a hypocotyl length-regulated gene, BnHL, which is closely linked to a known fertility gene, BnMs2, serving as a seedling morphology marker. This marker could be used to identify fertile plants in the breeding of RGMS lines based on hypocotyl traits. By targeting the BnHL gene, both homozygous and heterozygous edited mutants exhibited significantly longer hypocotyls than the wild type (WT). Furthermore, germination experiments revealed that 7 days after seed germination, the difference in hypocotyl length between the mutant and the WT seedlings reached its maximum, effectively distinguishing fertile plants under both white (W) and red/far-red (R/FR) light. Mutations in BnHL did not result in significant changes in main agronomic traits. Thus, this study provides a comprehensive strategy for screening and identifying a new morphological marker gene for early screening in RGMS hybrid breeding with completely non-transgene during the whole production.
油菜(Brassica napus)是全球重要的油料作物,具有很强的异交性。隐性遗传雄性不育(RGMS)是利用油菜异交的关键方法之一。然而,这种方法面临着固有的挑战,即在种子生产过程中去除可育植株既耗时又耗力。在这里,我们报告了一个下胚轴长度调控基因 BnHL,它与已知的可育基因 BnMs2 紧密相连,可作为幼苗形态标记。该标记可用于在基于下胚轴性状的RGMS品系育种中鉴定可育植株。通过靶向 BnHL 基因,同源和异源编辑突变体的下胚轴都明显长于野生型(WT)。此外,萌发实验显示,种子萌发7天后,突变体与WT幼苗的下胚轴长度差异达到最大值,能有效区分白光(W)和红光/远红光(R/FR)下的可育植株。BnHL 的突变并未导致主要农艺性状的显著变化。因此,本研究为在整个生产过程中完全不转基因的RGMS杂交育种早期筛选和鉴定新的形态标记基因提供了一种综合策略。
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引用次数: 0
SlVQ15 recruits SlWRKY30IIc to link with jasmonate pathway in regulating tomato defence against root-knot nematodes. SlVQ15招募SlWRKY30IIc与茉莉酸盐途径连接,调节番茄对根结线虫的防御。
IF 10.1 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-05 DOI: 10.1111/pbi.14493
Huang Huang, Xuechun Ma, Lulu Sun, Yingying Wang, Jilin Ma, Yihan Hong, Mingjie Zhao, Wenchao Zhao, Rui Yang, Susheng Song, Shaohui Wang

Tomato is one of the most economically important vegetable crops in the world and has been seriously affected by the devastating agricultural pest root-knot nematodes (RKNs). Current understanding of tomato resistance to RKNs is quite limited. VQ motif-containing family proteins are plant-specific regulators; however, whether and how tomato VQs regulate resistance to RKNs is unknown. Here, we found that SlVQ15 recruited SlWRKY30IIc to coordinately control tomato defence against the RKN Meloidogyne incognita without affecting plant growth and productivity. The jasmonate (JA)-ZIM domain (JAZ) repressors of the phytohormone JAs signalling associated and interfered with the interaction of SlVQ15 and SlWRKY30IIc. In turn, SlWRKY30IIc bound to SlJAZs promoters and cooperated with SlVQ15 to repress their expression, whereas this inhibitory effect was antagonized by SlJAZ5, forming a feedback regulatory mechanism. Moreover, SlWRKY30IIc expression was directly regulated by SlMYC2, a SlJAZ-interacting negative regulator of resistance to RKNs. In conclusion, our findings revealed that a regulatory circuit of SlVQ15-SlWRKY30IIc and the JA pathway fine-tunes tomato defence against the RKN M. incognita, and provided candidate genes and clues with great potential for crop improvement.

番茄是世界上经济价值最高的蔬菜作物之一,受到毁灭性农业害虫根结线虫(RKNs)的严重影响。目前对番茄抗根结线虫能力的了解还很有限。含 VQ 矩阵的家族蛋白是植物特异性调节因子,但番茄的 VQ 是否以及如何调节对 RKNs 的抗性尚不清楚。在这里,我们发现 SlVQ15 招募 SlWRKY30IIc 来协调控制番茄对 RKN Meloidogyne incognita 的防御,而不会影响植物的生长和产量。植物激素 JA 信号的茉莉酸(JA)-ZIM 结构域(JAZ)抑制因子与 SlVQ15 和 SlWRKY30IIc 的相互作用相关联并对其产生干扰。反过来,SlWRKY30IIc 与 SlJAZs 启动子结合,并与 SlVQ15 合作抑制其表达,而这种抑制作用被 SlJAZ5 所拮抗,形成一种反馈调控机制。此外,SlWRKY30IIc的表达受SlMYC2的直接调控,SlMYC2是与SlJAZ相互作用的抗RKNs的负调控因子。总之,我们的研究结果表明,SlVQ15-SlWRKY30IIc和JA通路的调控回路可微调番茄对RKN M. incognita的抗性,并为作物改良提供了候选基因和线索,具有巨大的潜力。
{"title":"SlVQ15 recruits SlWRKY30IIc to link with jasmonate pathway in regulating tomato defence against root-knot nematodes.","authors":"Huang Huang, Xuechun Ma, Lulu Sun, Yingying Wang, Jilin Ma, Yihan Hong, Mingjie Zhao, Wenchao Zhao, Rui Yang, Susheng Song, Shaohui Wang","doi":"10.1111/pbi.14493","DOIUrl":"https://doi.org/10.1111/pbi.14493","url":null,"abstract":"<p><p>Tomato is one of the most economically important vegetable crops in the world and has been seriously affected by the devastating agricultural pest root-knot nematodes (RKNs). Current understanding of tomato resistance to RKNs is quite limited. VQ motif-containing family proteins are plant-specific regulators; however, whether and how tomato VQs regulate resistance to RKNs is unknown. Here, we found that SlVQ15 recruited SlWRKY30IIc to coordinately control tomato defence against the RKN Meloidogyne incognita without affecting plant growth and productivity. The jasmonate (JA)-ZIM domain (JAZ) repressors of the phytohormone JAs signalling associated and interfered with the interaction of SlVQ15 and SlWRKY30IIc. In turn, SlWRKY30IIc bound to SlJAZs promoters and cooperated with SlVQ15 to repress their expression, whereas this inhibitory effect was antagonized by SlJAZ5, forming a feedback regulatory mechanism. Moreover, SlWRKY30IIc expression was directly regulated by SlMYC2, a SlJAZ-interacting negative regulator of resistance to RKNs. In conclusion, our findings revealed that a regulatory circuit of SlVQ15-SlWRKY30IIc and the JA pathway fine-tunes tomato defence against the RKN M. incognita, and provided candidate genes and clues with great potential for crop improvement.</p>","PeriodicalId":221,"journal":{"name":"Plant Biotechnology Journal","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2024-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142581628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
OsBRW1, a novel blast-resistant gene, coded a NBS-LRR protein to interact with OsSRFP1 to balance rice growth and resistance. OsBRW1 是一种新型抗瘟基因,编码一种 NBS-LRR 蛋白,与 OsSRFP1 相互作用,平衡水稻的生长和抗性。
IF 10.1 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-03 DOI: 10.1111/pbi.14494
Shiwei Ma, Shichang Xu, Huan Tao, Yunxia Huang, Changqing Feng, Guanpeng Huang, Shoukai Lin, Yiqiong Sun, Xuan Chen, Manegdebwaoga Arthur Fabrice Kabore, Samuel Tareke Woldegiorgis, Yufang Ai, Lina Zhang, Wei Liu, Huaqin He

It is urgent to mine novel blast-resistant genes in rice and develop new rice varieties with pyramiding blast-resistant genes. In this study, a new blast-resistant gene, OsBRW1, was screened from a set of rice near-isogenic lines (NILs) with different blast-resistant ability. Under the infection of Magnaporthe oryzae (M. oryzae), OsBRW1 in the resistant NIL Pi-4b was highly induced than that in the susceptible NIL Pi-1 and their parent line CO39, and the blast-resistant ability of OsBRW1 was further confirmed by using CRISPR/Cas9 knockout and over-expression methods. The protein encoded by OsBRW1 was a typical NBS-LRR with NB-ARC domain and localized in both cytoplasm and nucleus, and the transient expression of OsBRW1 was capable of triggering hypersensitive response in tobacco leaves. Protein interaction experiments showed that OsBRW1 protein directly interacted with OsSRFP1. At the early infection stage of M. oryzae, OsBRW1 gene induced OsSRFP1 to highly expression level and accumulated H2O2, up-regulated the defence responsive signalling transduction genes and the pathogenesis-related genes and increased JA and SA content in the resistant NIL Pi-4b. By contrary, lower content of endogenous JA and SA in osbrw1 mutants was found at the same stage. After that, OsSRFP1 was down-regulated to constitution abundance to balance the growth of the resistant NIL Pi-4b. In summary, OsBRW1 solicited OsSRFP1 to resist the infection of blast fungus in rice by inducing the synergism of induced systemic resistance (ISR) and system acquired resistance (SAR) and to balance the growth of rice plants.

挖掘水稻中的新型抗瘟基因,培育具有金字塔抗瘟基因的水稻新品种迫在眉睫。本研究从一组具有不同抗瘟能力的水稻近等基因系(NILs)中筛选出了一个新的抗瘟基因OsBRW1。在Magnaporthe oryzae(M. oryzae)的感染下,抗性NIL Pi-4b中的OsBRW1比易感NIL Pi-1及其亲本品系CO39中的OsBRW1具有更高的诱导性,并通过CRISPR/Cas9基因敲除和过表达的方法进一步证实了OsBRW1的抗瘟能力。OsBRW1编码的蛋白质是一种典型的NBS-LRR,具有NB-ARC结构域,定位于细胞质和细胞核中,瞬时表达OsBRW1能引发烟草叶片的超敏反应。蛋白质相互作用实验表明,OsBRW1 蛋白与 OsSRFP1 直接相互作用。在M. oryzae感染初期,OsBRW1基因诱导OsSRFP1达到高表达水平并积累H2O2,上调抗性NIL Pi-4b的防御反应信号转导基因和致病相关基因,增加JA和SA含量。相反,在同一阶段,osbrw1 突变体的内源 JA 和 SA 含量较低。之后,OsSRFP1被下调至构成丰度,以平衡抗性NIL Pi-4b的生长。综上所述,OsBRW1通过诱导系统抗性(ISR)和系统获得性抗性(SAR)的协同作用,促使OsSRFP1抵抗稻瘟病真菌的侵染,并平衡水稻植株的生长。
{"title":"OsBRW1, a novel blast-resistant gene, coded a NBS-LRR protein to interact with OsSRFP1 to balance rice growth and resistance.","authors":"Shiwei Ma, Shichang Xu, Huan Tao, Yunxia Huang, Changqing Feng, Guanpeng Huang, Shoukai Lin, Yiqiong Sun, Xuan Chen, Manegdebwaoga Arthur Fabrice Kabore, Samuel Tareke Woldegiorgis, Yufang Ai, Lina Zhang, Wei Liu, Huaqin He","doi":"10.1111/pbi.14494","DOIUrl":"https://doi.org/10.1111/pbi.14494","url":null,"abstract":"<p><p>It is urgent to mine novel blast-resistant genes in rice and develop new rice varieties with pyramiding blast-resistant genes. In this study, a new blast-resistant gene, OsBRW1, was screened from a set of rice near-isogenic lines (NILs) with different blast-resistant ability. Under the infection of Magnaporthe oryzae (M. oryzae), OsBRW1 in the resistant NIL Pi-4b was highly induced than that in the susceptible NIL Pi-1 and their parent line CO39, and the blast-resistant ability of OsBRW1 was further confirmed by using CRISPR/Cas9 knockout and over-expression methods. The protein encoded by OsBRW1 was a typical NBS-LRR with NB-ARC domain and localized in both cytoplasm and nucleus, and the transient expression of OsBRW1 was capable of triggering hypersensitive response in tobacco leaves. Protein interaction experiments showed that OsBRW1 protein directly interacted with OsSRFP1. At the early infection stage of M. oryzae, OsBRW1 gene induced OsSRFP1 to highly expression level and accumulated H<sub>2</sub>O<sub>2</sub>, up-regulated the defence responsive signalling transduction genes and the pathogenesis-related genes and increased JA and SA content in the resistant NIL Pi-4b. By contrary, lower content of endogenous JA and SA in osbrw1 mutants was found at the same stage. After that, OsSRFP1 was down-regulated to constitution abundance to balance the growth of the resistant NIL Pi-4b. In summary, OsBRW1 solicited OsSRFP1 to resist the infection of blast fungus in rice by inducing the synergism of induced systemic resistance (ISR) and system acquired resistance (SAR) and to balance the growth of rice plants.</p>","PeriodicalId":221,"journal":{"name":"Plant Biotechnology Journal","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2024-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142567144","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Wheat TaPYL9-involved signalling pathway impacts plant drought response through regulating distinct osmotic stress-associated physiological indices 小麦TaPYL9参与的信号通路通过调节不同的渗透胁迫相关生理指标影响植物的干旱响应
IF 13.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-03 DOI: 10.1111/pbi.14501
Yanyang Zhang, Yingjia Zhao, Xiaoyang Hou, Chunlin Zhang, Ziyi Wang, Jiaqi Zhang, Xianchang Liu, Xinxin Shi, Wanrong Duan, Kai Xiao
The abscisic acid (ABA) signalling pathway plays a crucial role in plants’ response to drought stress. In this study, we aimed to characterize the impact of an ABA signalling module, which consisted of TaPYL9 and its downstream partners in Triticum aestivum, on plant drought adaptation. Our results showed that TaPYL9 protein contains conserved motifs and targets plasma membrane and nucleus after being sorted by the endoplasmic reticulum. In addition, TaPYL9 transcripts in both roots and leaves were significantly upregulated in response to drought stress. We conducted glucuronidase (GUS) histochemical staining analysis for transgenic plants carrying a truncated TaPYL9 promoter, which suggested that cis-elements associate with ABA and drought response, such as ABRE, DRE and recognition sites MYB and MYC, regulating the gene transcription under drought conditions. Using protein interaction assays (i.e., yeast two-hybrid, bimolecular fluorescence complementation (BiFC), co-immunoprecipitation (Co-IP) and in vitro pull-down), we demonstrated interactions between the intermediate segment of TaPYL9, the intermediate segment of TaPP2C6, the N-terminus of TaSnRK2.8 and the C-terminus of the transcription factor TabZIP1 in wheat, indicating the involvement of TaPYL9 in the constitution of an ABA signalling module, namely TaPYL9/TaPP2C6/TaSnRK2.8/TabZIP1. Transgene analysis revealed that TaPYL9, TaSnRK2.8 and TabZIP1 positively regulated drought response, while TaPP2C6 negatively regulated it, and that these genes were closely associated with the regulation of stomata movement, osmolyte accumulation and ROS homeostasis. Electrophoretic mobility shift (EMSA) and transcriptioal activation assays indicated that TabZIP1 interacted promoters of TaP5CS2, TaSLAC1-1 and TaCAT2 and activated transcription of these genes, which regulated proline biosynthesis, stomata movement and ROS scavenging upon drought signalling, respectively. Furthermore, we found that the transcripts of TaPYL9 and stress-responsive genes were positively correlated with yields in wheat cultivars under field drought conditions. Altogether, our findings suggest that the TaPYL9-involved signalling pathway significantly regulates drought response by modulating osmotic stress-associated physiological processes in T. aestivum.
脱落酸(ABA)信号通路在植物应对干旱胁迫的过程中起着至关重要的作用。在本研究中,我们的目的是鉴定由TaPYL9及其下游伙伴组成的ABA信号模块对小麦干旱适应性的影响。我们的研究结果表明,TaPYL9蛋白含有保守基序,经内质网分选后靶向质膜和细胞核。此外,根和叶中的 TaPYL9 转录物在干旱胁迫下均显著上调。我们对携带截短的 TaPYL9 启动子的转基因植株进行了葡萄糖醛酸酶(GUS)组织化学染色分析,结果表明与 ABA 和干旱响应相关的顺式元件,如 ABRE、DRE 以及识别位点 MYB 和 MYC,在干旱条件下调控基因转录。利用蛋白质相互作用试验(即我们利用蛋白质相互作用试验(即酵母双杂交、双分子荧光互补(BiFC)、共免疫沉淀(Co-IP)和体外牵引),证明了 TaPYL9 的中间段、TaPP2C6 的中间段、TaSnRK2.8和转录因子TabZIP1的C端之间的相互作用,表明TaPYL9参与了ABA信号模块(即TaPYL9/TaPP2C6/TaSnRK2.8/TabZIP1)的构成。转基因分析表明,TaPYL9、TaSnRK2.8 和 TabZIP1 对干旱响应有正向调控作用,而 TaPP2C6 对干旱响应有负向调控作用,这些基因与气孔运动、渗透溶质积累和 ROS 平衡调控密切相关。电泳迁移(EMSA)和转录激活试验表明,TabZIP1与TaP5CS2、TaSLAC1-1和TaCAT2的启动子相互作用,激活了这些基因的转录,而这些基因在干旱信号传导下分别调控脯氨酸的生物合成、气孔运动和ROS清除。此外,我们还发现,在田间干旱条件下,TaPYL9和胁迫响应基因的转录与小麦栽培品种的产量呈正相关。总之,我们的研究结果表明,TaPYL9参与的信号通路通过调节小麦渗透胁迫相关的生理过程,显著调控了小麦的干旱响应。
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引用次数: 0
CRISPR/Cas knockout of the NADPH oxidase gene OsRbohB reduces ROS overaccumulation and enhances heat stress tolerance in rice. CRISPR/Cas 敲除 NADPH 氧化酶基因 OsRbohB 可减少 ROS 过度积累并增强水稻的热胁迫耐受性。
IF 10.1 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-11-01 DOI: 10.1111/pbi.14500
Xiaolong Liu, Ping Ji, Jingpeng Liao, Ximiao Duan, Zhiyang Luo, Xin Yu, Chang-Jie Jiang, Chen Xu, Hongtao Yang, Bo Peng, Kai Jiang

Heat stress (HS) has become a major factor limiting crop yields worldwide. HS inhibits plant growth by ROS accumulation, and NADPH oxidases (Rbohs) are major ROS producers in plants. Here, we show that CRISPR/Cas knockout of the OsRbohB (OsRbohB-KO) significantly increased rice tolerance to HS imposed at various different growth stages. We produced OsRbohB-KO and OsRbohB-overexpression (OsRbohB-OE) lines in a japonica cultivar, Nipponbare. Compared with nontransgenic wild-type (WT) plants, the OsRbohB-KO lines showed a significant increase in chlorophyll contents (5.2%-58.0%), plant growth (48.2%-65.6%) and grain yield (8.9%-20.5%), while reducing HS-induced ROS accumulation in seeds (21.3%-33.0%), seedlings (13.0%-30.4%), anthers (13.1%-20.3%) and grains (9.7%-22.1%), under HS conditions. Analysis of yield components revealed that the increased yield of OsRbohB-KO plants was due to increased starch synthetase activity, spikelets per panicle (2.0%-9.3%), filled spikelets (4.8%-15.5%), percentage of filled spikelets (2.4%-6.8%) and 1000-grain weight (2.9%-7.4%) under HS conditions during the reproductive stage. Grain milling and appearance quality, and starch content were also significantly increased in OsRbohB-KO plants under HS conditions during the mature stage. Furthermore, OsRbohB-KO significantly upregulated the expression levels of heat shock-related genes, OsHSP23.7, OsHSP17.7, OsHSF7 and OsHsfA2a, in rice seedlings and grains under long-term HS conditions. Conversely, OsRbohB-OE resulted in phenotypes that were opposite to OsRbohB-KO in most cases. Our results suggest that suppression of OsRbohB provides an effective approach for alleviating heat damage and improving grain yield and quality of rice under long-term HS conditions.

热胁迫(HS)已成为限制全球作物产量的一个主要因素。HS通过ROS积累抑制植物生长,而NADPH氧化酶(Rbohs)是植物体内主要的ROS产生者。在这里,我们发现 CRISPR/Cas 敲除 OsRbohB(OsRbohB-KO)能显著提高水稻在不同生长阶段对 HS 的耐受性。我们在粳稻栽培品种 Nipponbare 中培育了 OsRbohB-KO 和 OsRbohB 表达株系(OsRbohB-OE)。与非转基因野生型(WT)植株相比,在 HS 条件下,OsRbohB-KO 株系的叶绿素含量(5.2%-58.0%)、植株生长(48.2%-65.6%)和谷物产量(8.9%-20.5%)均显著增加,同时减少了 HS 诱导的 ROS 在种子(21.3%-33.0%)、幼苗(13.0%-30.4%)、花药(13.1%-20.3%)和谷物(9.7%-22.1%)中的积累。产量成分分析表明,在生育期 HS 条件下,OsRbohB-KO 植物的产量增加是由于淀粉合成酶活性、每圆锥花序小穗(2.0%-9.3%)、灌浆小穗(4.8%-15.5%)、灌浆小穗百分比(2.4%-6.8%)和千粒重(2.9%-7.4%)的增加。在成熟期的 HS 条件下,OsRbohB-KO 植物的谷粒磨碎率、外观质量和淀粉含量也显著增加。此外,在长期 HS 条件下,OsRbohB-KO 能显著上调水稻幼苗和谷粒中热休克相关基因 OsHSP23.7、OsHSP17.7、OsHSF7 和 OsHsfA2a 的表达水平。相反,在大多数情况下,OsRbohB-OE 导致的表型与 OsRbohB-KO 相反。我们的研究结果表明,在长期 HS 条件下,抑制 OsRbohB 是减轻水稻热损伤、提高谷物产量和品质的有效方法。
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引用次数: 0
Redefining the accumulated temperature index for accurate prediction of rice flowering time in diverse environments 重新定义积温指数,准确预测不同环境下的水稻花期
IF 13.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-10-29 DOI: 10.1111/pbi.14498
Xingbing Xu, Qiong Jia, Sijia Li, Julong Wei, Luchang Ming, Qi Yu, Jing Jiang, Peng Zhang, Honglin Yao, Shibo Wang, Chunjiao Xia, Kai Wang, Zhenyu Jia, Weibo Xie
SummaryAccurate prediction of flowering time across diverse environments is crucial for effective crop management and breeding. While the accumulated temperature index (ATI) is widely used as an indicator for estimating flowering time, its traditional definition lacks systematic evaluation and genetic basis understanding. Here, using data from 422 rice hybrids across 47 locations, we identified the optimal ATI calculation window as 1 day after sowing to 26 days before flowering. Based on this redefined ATI, we developed a single‐parameter model that outperforms the state‐of‐the‐art reaction norm index model in both accuracy and stability, especially with limited training data. We identified 10 loci significantly associated with ATI variation, including two near known flowering time genes and four linked to ecotype differentiation. To enhance practical utility, we developed an efficient flowering time prediction kit using 28 functionally relevant markers, complemented by a user‐friendly online tool (http://xielab.hzau.edu.cn/ATI). Our approach can be easily applied to other crops, as ATI is commonly used across various agricultural systems.
摘要准确预测不同环境下的开花时间对作物的有效管理和育种至关重要。虽然积温指数(ATI)被广泛用作估计开花时间的指标,但其传统定义缺乏系统的评估和对遗传基础的了解。在此,我们利用 47 个地点 422 个水稻杂交种的数据,确定了最佳 ATI 计算窗口为播种后 1 天至开花前 26 天。根据这一重新定义的 ATI,我们开发了一个单参数模型,该模型在准确性和稳定性方面都优于最先进的反应标准指数模型,尤其是在训练数据有限的情况下。我们发现了 10 个与 ATI 变化明显相关的基因位点,其中包括两个接近已知花期基因的位点和四个与生态型分化相关的位点。为了提高实用性,我们利用 28 个功能相关的标记开发了一个高效的花期预测试剂盒,并辅以一个用户友好的在线工具 (http://xielab.hzau.edu.cn/ATI)。我们的方法可以很容易地应用于其他作物,因为 ATI 通常用于各种农业系统。
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引用次数: 0
期刊
Plant Biotechnology Journal
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