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Hums in the humus: opportunities and challenges for soil ecoacoustics. 腐殖质中的嗡嗡声:土壤生态声学的机遇与挑战。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-13 DOI: 10.1016/j.tree.2025.12.007
Alex F Taylor, Martin F Breed, Carlos Abrahams, Amy Annells, Tom Bradfer-Lawrence, Timothy Cavagnaro, Carolyn-Monika Görres, Martin M Gossner, Craig Liddicoat, Simon Linke, Oliver C Metcalf, Louise Roberts, Louise Vang Sørensen, Xin Sun, Jonathan H Timperley, Jake M Robinson

Soil ecoacoustics is an emerging field and suite of tools that use sound and vibration to detect belowground biological activity. It offers a minimally invasive way to assess soil communities and ecosystem processes. Across biomes, we found that soil ecoacoustics is being used to detect organisms, quantify animal behaviour, monitor soil health, and assess restoration interventions. In this review, we show that ecoacoustic metrics reflect changes in soil fauna activity, disturbance impacts, and recovery trajectories. However, major challenges remain, including inconsistent terminology, limited understanding of sound propagation across soil types, difficulty separating biotic from abiotic signals, and a lack of standardised methods. Thus, we propose foundational standard operating procedures (SOPs) and identify how soil ecoacoustics could be integrated into global biodiversity monitoring frameworks.

土壤生态声学是一个新兴的领域,也是一套利用声音和振动来探测地下生物活动的工具。它提供了一种微创的方法来评估土壤群落和生态系统过程。在整个生物群系中,我们发现土壤生态声学正被用于检测生物、量化动物行为、监测土壤健康和评估恢复干预措施。在这篇综述中,我们表明生态声学指标反映了土壤动物活动、干扰影响和恢复轨迹的变化。然而,主要的挑战仍然存在,包括不一致的术语,对土壤类型间声音传播的理解有限,难以区分生物和非生物信号,以及缺乏标准化的方法。因此,我们提出了基本的标准操作程序(sop),并确定了如何将土壤生态声学纳入全球生物多样性监测框架。
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引用次数: 0
Co-circulation and co-infection: parasite interactions across scales. 共循环和共感染:寄生虫跨尺度的相互作用。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-08 DOI: 10.1016/j.tree.2025.12.002
Giacomo Zilio, Alison B Duncan, Vanessa O Ezenwa, Andy Fenton, Erida Gjini, Oliver Kaltz, Sara Magalhães, Yannis Michalakis, Nicole Mideo, Amy Pedersen, Luna Taguchi, Charlotte Tollenaere, Flore Zélé, Andrew D Dean

Parasite-parasite interactions occur both within and between hosts, but the two scales are rarely considered together. Consequently, there is a gap in our ability to predict the integrated effects of interactions occurring across scales, disentangle their relative contributions to key ecological outcomes, and accurately identify the drivers of host-parasite evolutionary responses. Here, we extend the standard susceptible-infected framework of theoretical epidemiology to explicitly incorporate parasite-parasite interactions across scales. We identify where - in each step of the transmission process - such interactions may occur, at the within- or between-host levels, providing empirical examples where possible. Thus, we demonstrate how integrating the two scales provides a more complete understanding of the evolutionary ecology of multi-parasite systems and suggest future avenues of investigation.

寄生虫-寄生虫的相互作用发生在宿主内部和宿主之间,但这两个尺度很少被考虑在一起。因此,在预测跨尺度发生的相互作用的综合效应、理清它们对关键生态结果的相对贡献以及准确识别宿主-寄生虫进化反应的驱动因素方面,我们的能力存在差距。在这里,我们扩展了理论流行病学的标准易感感染框架,以明确地纳入寄生虫-寄生虫跨尺度的相互作用。我们确定在传播过程的每个步骤中,在宿主内部或宿主之间可能发生这种相互作用的地方,并尽可能提供经验例子。因此,我们展示了如何整合两个尺度提供了对多寄生虫系统的进化生态学的更完整的理解,并提出了未来的研究途径。
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引用次数: 0
How can natural history museums help nature recover? 自然历史博物馆如何帮助自然恢复?
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-03 DOI: 10.1016/j.tree.2025.12.008
Ken Norris, John Tweddle

It is widely accepted that we face a biodiversity crisis due to human activities, and we need active conservation interventions to address it. Natural history museums have recently made public commitments to play a more active role in helping to address the biodiversity crisis. What role might they play in helping nature recover? To answer this question, we recognise a hierarchy of conservation interventions (species, community and whole systems) and illustrate the role that museums can play in these. We also discuss how museums enable people to engage with conservation science. While barriers remain, there are significant opportunities for the conservation community to better integrate collections into their research. We need museums to help enable this to happen.

人们普遍认为,由于人类活动,我们面临着生物多样性危机,我们需要积极的保护干预措施来解决这一问题。自然历史博物馆最近公开承诺在帮助解决生物多样性危机方面发挥更积极的作用。它们在帮助自然恢复中可能发挥什么作用?为了回答这个问题,我们认识到保护干预(物种、群落和整个系统)的层次结构,并说明博物馆在这些方面可以发挥的作用。我们还讨论了博物馆如何使人们参与保护科学。虽然障碍仍然存在,但保护界有很大的机会更好地将收藏整合到他们的研究中。我们需要博物馆帮助实现这一目标。
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引用次数: 0
Advancing species-based predictions of Nature's contributions to people. 推进基于物种的自然对人类贡献的预测。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-02 DOI: 10.1016/j.tree.2025.12.003
Pierre-Louis Rey, Antoine Adde, Nathan Külling, Anthony Lehmann, Antoine Guisan

Nature's contributions to people (NCP) are essential for human wellbeing, yet most assessments still rely on land-cover indicators that overlook how biodiversity supports these contributions. We propose that species-level data, widely used in biodiversity mapping, can better inform direct NCP prediction through the development of species' contributions to people (SCP). Linking species to NCP through relational SCP databases and combining these with species distribution models and global change scenarios can yield spatial NCP predictions that can be better rooted in species' ecological characteristics. This approach fosters integrated biodiversity-NCP planning and supports conservation goals. We outline key methodological steps, identify research needs, and encourage collective progress to advance SCP knowledge for a transformative shift in how we assess and manage NCP.

自然对人类的贡献(NCP)对人类福祉至关重要,但大多数评估仍然依赖于土地覆盖指标,忽视了生物多样性如何支持这些贡献。我们提出,广泛用于生物多样性制图的物种水平数据可以通过物种对人类的贡献(SCP)的发展,更好地为直接预测NCP提供信息。通过关系SCP数据库将物种与NCP联系起来,并将其与物种分布模型和全球变化情景相结合,可以更好地基于物种的生态特征进行空间NCP预测。这种方法促进了生物多样性- ncp的综合规划,并支持了保护目标。我们概述了关键的方法步骤,确定了研究需求,并鼓励集体进步,以推进SCP知识,从而在评估和管理NCP的方式上实现革命性转变。
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引用次数: 0
Phenotypic signatures of incomplete lineage sorting in hominids. 原始人不完全谱系分选的表型特征。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-20 DOI: 10.1016/j.tree.2025.10.009
Stine Keibel Blom, Christy Anna Hipsley, Guojie Zhang

Incomplete lineage sorting (ILS) generates widespread genomic discordance in rapidly radiating lineages, yet its phenotypic impacts remain poorly understood. Among hominids, over 30% of the human genome supports conflicting phylogenetic trees due to ILS, affecting numerous genes with morphological functions. We present a trait-based approach integrating comparative morphology, population genomics, and functional experiments to identify and validate ILS-affected traits in hominids, often interpreted as convergent adaptations. Phylogenetically incongruent traits are frequent in the craniofacial and appendicular skeletons, highlighting priority areas for ILS investigation and ascertainment bias. This approach requires collaborative models bridging morphological and genomic data gaps in non-human hominid research, illuminating the forces shaping great ape evolution and establishing a roadmap for exploring ILS consequences in diverse taxonomic groups.

不完全谱系分选(ILS)在快速辐射谱系中产生广泛的基因组不一致,但其对表型的影响仍然知之甚少。在原始人中,超过30%的人类基因组由于ILS而支持相互冲突的系统发育树,影响了许多具有形态功能的基因。我们提出了一种基于性状的方法,结合比较形态学、种群基因组学和功能实验来鉴定和验证原始人中受il影响的性状,这些性状通常被解释为趋同适应。系统发育不一致的特征在颅面和阑尾骨骼中很常见,突出了ILS调查和确定偏差的优先领域。这种方法需要协作模型弥合非人类原始人研究中形态学和基因组数据的差距,阐明类人猿进化的力量,并为探索不同分类群体的ILS后果建立路线图。
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引用次数: 0
Transforming marine pest control for the 21st century. 改变21世纪的海洋病虫害防治。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-01 Epub Date: 2025-10-23 DOI: 10.1016/j.tree.2025.10.001
Patrick L Cahill, Grant A Hopkins, Gregory M Ruiz, Ian C Davidson

Eradication and control of invasive pests in the sea is poorly developed. Advancing beyond cumbersome, inefficient, and often manual removal of marine pests will require ambition and innovation. We outline key steps to enable effective marine pest control and eradication by (i) building upon strategic and tactical approaches used in successful terrestrial pest control campaigns, and (ii) developing a toolbox of effective and scalable marine pest-control methods. To overcome widespread defeatism, we advocate that marine biosecurity risk-benefit decision making should favor action to build knowledge and confidence of how to drive pest populations into decline. These are achievable steps toward stronger marine biosecurity systems that can expand our capacity to eliminate or reduce pest populations and their negative impacts.

根除和控制海洋入侵害虫的工作不发达。要想摆脱繁琐、低效且往往需要人工清除的海洋有害生物,需要雄心和创新。我们概述了通过以下方式实现有效控制和根除海洋有害生物的关键步骤:(i)以成功的陆地有害生物防治运动中使用的战略和战术方法为基础,以及(ii)开发有效和可扩展的海洋有害生物防治方法工具箱。为了克服普遍存在的失败主义,我们主张海洋生物安全风险-收益决策应该倾向于采取行动,建立如何推动有害生物种群减少的知识和信心。这些都是朝着加强海洋生物安全系统迈出的可实现的步骤,可以扩大我们消除或减少有害生物种群及其负面影响的能力。
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引用次数: 0
Chronic anthropogenic disturbances reorganize tropical dry forest biota. 慢性人为干扰重组热带干林生物群。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-06 DOI: 10.1016/j.tree.2025.09.018
Elâine M S Ribeiro, Rainer Wirth, Marcelo Tabarelli, Inara R Leal

Chronic anthropogenic disturbances (i.e., the continuous removal of small portions of forest biomass) are pervasive in tropical dry forest. We demonstrate that these disturbances trigger consistent changes across multiple ecological levels, from population to ecosystem levels. Plant populations exhibit contrasting responses, with some species being negatively affected, whereas others persist or even thrive. Communities become species-poor and dominated by disturbance-adapted plant and animal species. At the ecosystem level, chronic disturbances reduce forest biomass, soil nutrient concentration/stocks, productivity, and the provision of ecosystem services. Collectively, these responses drive dry forests across four potential transitions: arrested succession, forest-shrub conversion, novel ecosystems, and desertification.

在热带干燥森林中,长期的人为干扰(即森林生物量的一小部分不断被移走)是普遍存在的。我们证明,这些干扰引发了从人口到生态系统水平的多个生态水平的一致变化。植物种群表现出截然不同的反应,一些物种受到负面影响,而另一些物种则持续存在,甚至茁壮成长。群落变得物种贫乏,并以适应干扰的动植物物种为主。在生态系统层面,慢性干扰减少了森林生物量、土壤养分浓度/储量、生产力和生态系统服务的提供。总的来说,这些反应推动了干旱森林的四种潜在转变:演替受阻、森林-灌木转换、新型生态系统和荒漠化。
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引用次数: 0
From rivals to partners: adversarial collaboration in ecology and evolution. 从竞争对手到合作伙伴:生态学和进化中的对抗性合作。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-28 DOI: 10.1016/j.tree.2025.11.001
Juan Gefaell, Tobias Uller

Since their inception, ecology and evolutionary biology have been filled with controversies. While controversies are generally beneficial, they can sometimes hinder meaningful communication and, ultimately, decelerate scientific advancement. A clear example is when scientific rivals enter a point-scoring mode in which proving the opponent wrong sidelines objective assessments. To counter this, we introduce to the ecology and evolutionary biology audiences the adversarial collaboration approach, where opponents cooperatively address their disagreements to advance their field. We describe the logic of adversarial collaboration, examine a series of potential challenges to its successful adoption in these disciplines, and show how they can be overcome. Adversarial collaboration is an invitation to align controversies with the scientific ethos of collectively seeking empirical truths.

从一开始,生态学和进化生物学就充满了争议。尽管争议通常是有益的,但它们有时会阻碍有意义的交流,并最终减缓科学进步。一个明显的例子是,当科学竞争对手进入一种得分模式时,证明对手是错误的,就会进行客观的评估。为了解决这个问题,我们向生态学和进化生物学的听众介绍了对抗性合作方法,在这种方法中,对手合作解决他们的分歧,以推进他们的领域。我们描述了对抗性协作的逻辑,研究了在这些学科中成功采用对抗性协作的一系列潜在挑战,并展示了如何克服这些挑战。对抗性合作是一种邀请,将争议与集体寻求经验真理的科学精神结合起来。
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引用次数: 0
Cradles, museums, and disequilibria: reconciling biodiversity dynamics using equilibrium theory. 摇篮、博物馆和不平衡:用平衡理论调和生物多样性动态。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-13 DOI: 10.1016/j.tree.2025.10.004
David Storch, Grace I Ridder, Jordan G Okie

Historical nonequilibrium processes are often considered the main drivers of global biodiversity patterns. We argue that while biodiversity is often out of equilibrium, the concept of equilibrium is still crucial for interpreting macroecological diversity patterns, and current confusion in the literature stems from misunderstandings concerning equilibrium dynamics. We demonstrate how an equilibrium-based framework, such as the 'Equilibrium Theory of Biodiversity Dynamics' (ETBD), illuminates diversity patterns in space and time, including the latitudinal diversity gradient, even in the out-of-equilibrium context. This framework has profound implications for understanding diversity dynamics during historical, current, and future climate changes, suggesting that while temperate diversity is probably below its equilibrium level, tropical biodiversity could be above its equilibrium, elevating extinction risk in tropical biomes.

历史非平衡过程通常被认为是全球生物多样性格局的主要驱动因素。我们认为,虽然生物多样性经常处于不平衡状态,但平衡的概念仍然是解释宏观生态多样性模式的关键,目前文献中的混乱源于对平衡动力学的误解。我们展示了一个基于平衡的框架,如“生物多样性动力学平衡理论”(ETBD),如何阐明空间和时间上的多样性模式,包括纬度多样性梯度,甚至在非平衡环境下。这一框架对理解历史、当前和未来气候变化中的多样性动态具有深远的意义,表明温带生物多样性可能低于其平衡水平,而热带生物多样性可能高于其平衡水平,从而增加了热带生物群落的灭绝风险。
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引用次数: 0
Hidden effects of avian malaria under climate warming. 气候变暖下禽疟的隐性效应。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-02 DOI: 10.1016/j.tree.2025.11.007
Érika Martins Braga, Lis Marques de C Vieira

Disruption of the temperature-humidity balance poses a threat to global ecosystems and affects the spread of infectious diseases. A long-term study by Theodosopoulos et al. on a wild bird population in a temperate region of Northern Europe reveals a significant increase in avian malaria parasite prevalence under a climate-warming scenario.

温湿度平衡的破坏对全球生态系统构成威胁,并影响传染病的传播。Theodosopoulos等人对北欧温带地区的野鸟种群进行的一项长期研究表明,在气候变暖的情况下,禽疟寄生虫的流行率显著增加。
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引用次数: 0
期刊
Trends in ecology & evolution
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