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Beyond supergenes: the diverse roles of inversions in trait evolution. 超越超基因:性状进化中反转的不同作用。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-11-01 Epub Date: 2025-09-04 DOI: 10.1016/j.tree.2025.08.004
Maren Wellenreuther, Rebekah A Oomen, Kwi Young Han, Rebecca Krohman, Thorsten B H Reusch

Chromosomal inversions are ubiquitous across the Tree of Life, with genome-wide studies revealing a bias toward smaller inversions, yet research has disproportionately focused on large, supergene-like inversions linked to discrete phenotypes. This limits our understanding of inversions' roles in trait evolution, as their size affects their potential functional impact. Investigation of smaller inversions and multi-inversion genotypes is crucial to elucidate their role in shaping continuous traits and evolutionary adaptation. Addressing this requires a shift towards a systematic study of smaller inversions and the use of experimental assays and functional annotation to identify the evolutionary forces driving different genomic trait architectures.

染色体倒位在生命之树中无处不在,全基因组研究揭示了对较小倒位的偏爱,然而研究不成比例地集中在与离散表型相关的大的、超基因样的倒位上。这限制了我们对反转在性状进化中的作用的理解,因为它们的大小会影响它们潜在的功能影响。研究较小的反转和多反转基因型对于阐明它们在塑造连续性状和进化适应中的作用至关重要。解决这一问题需要转向对较小反转的系统研究,并使用实验分析和功能注释来确定驱动不同基因组性状结构的进化力量。
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引用次数: 0
Formation of three great Asian plateaus, climate change, and biodiversity. 亚洲三大高原的形成、气候变化和生物多样性。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-12 DOI: 10.1016/j.tree.2025.07.008
Guan-Long Cao, Xiao-Qian Li, Kun-Li Xiang, Andrey S Erst, Florian Jabbour, Rosa Del C Ortiz, Jian Yang, Wei Wang

The Qinghai-Tibet, Iran, and Mongolia plateaus constitute the largest continuous mountain belt on Earth and harbor the world's richest temperate alpine ecosystem, but the original timing and evolutionary causes of their biodiversity are poorly understood. Here, we review the geologic and phylogenetic evidence and compare it with the formation processes of the three plateaus. We show that the formation of the three plateaus is a major driver for change in the Asian landscape and biotas. Among the three plateaus, the Qinghai-Tibet Plateau has the most ancient evolutionary history and hosts the oldest biotic components and the highest biodiversity. The Neogene was a period of marked diversification across the three plateaus, thus leading to the formation of modern biotas.

青藏高原、伊朗高原和蒙古高原是地球上最大的连续山带,拥有世界上最丰富的温带高寒生态系统,但其生物多样性的起源时间和演化原因尚不清楚。在此,我们回顾了地质和系统发育证据,并将其与三个高原的形成过程进行了比较。研究表明,这三个高原的形成是亚洲景观和生物多样性变化的主要驱动力。在三个高原中,青藏高原具有最古老的进化历史,拥有最古老的生物成分和最高的生物多样性。新近纪是三个高原上明显多样化的时期,从而导致了现代生物群的形成。
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引用次数: 0
A landscape ecological approach to spatial conservation planning - ecological security pattern. 空间保护规划的景观生态学视角——生态安全格局。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-09-02 DOI: 10.1016/j.tree.2025.07.014
Jian Peng, Dongmei Xu, Hui Tang, Hong Jiang, Jianquan Dong, Jianguo Wu

Addressing practical challenges in ecological conservation and restoration planning, ecological security pattern (ESP) - spatial networks composed of ecological sources and connecting corridors - offers an actionable and nature-based framework. Rooted in landscape ecology, the ESP approach integrates ecological thresholds and connectivity to ensure ecosystem integrity and landscape sustainability. Although ESP-related research has proliferated - particularly in China - critical dimensions, such as underlying ecological mechanisms, spatiotemporal dynamics, and spillover effects, have received less attention. Consequently, the foundational scientific concepts and research priorities remain insufficiently articulated, hindering ESP's further development and broader international acceptance. To fill this knowledge gap, we identify key research issues for ESP to tackle the main challenges in its construction, optimization, and evaluation, highlighting future directions as a landscape ecological approach to spatial conservation and restoration planning.

为解决生态保护与修复规划中的实际挑战,生态安全格局——由生态源和连接廊道组成的空间网络——提供了一个可操作的、基于自然的框架。ESP方法植根于景观生态学,将生态阈值和连通性结合起来,以确保生态系统的完整性和景观的可持续性。尽管esp相关的研究已经激增,特别是在中国,但关键维度,如潜在的生态机制、时空动态和溢出效应,却很少受到关注。因此,基础科学概念和研究重点仍然不够清晰,阻碍了ESP的进一步发展和更广泛的国际认可。为了填补这一知识空白,我们确定了ESP的关键研究问题,以解决其建设,优化和评估方面的主要挑战,并强调了景观生态学方法在空间保护和恢复规划中的未来发展方向。
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引用次数: 0
Rainforest ecology in the shade of deep time. 雨林生态的阴影深埋在时间里。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-09-10 DOI: 10.1016/j.tree.2025.09.006
Chenyang Cai

Our understanding of the ecology and evolution of Eocene paleobiodiversity in the Southern Hemisphere remains limited. A middle Eocene (∼41 Ma) tropical ecosystem from the Umarsar Lignite Mine, recently reported by Agnihotri et al., revealed over 800 arthropods and 118 palynomorph species thriving in warm, humid conditions. The northward drift and favorable climate of India drove diversification, offering insights for modern tropical forest conservation amid climate change.

我们对南半球始新世古生物多样性的生态学和进化的认识仍然有限。Agnihotri等人最近报道了Umarsar褐煤矿的中始新世(~ 41 Ma)热带生态系统,发现800多种节肢动物和118种藓类动物在温暖潮湿的条件下茁壮成长。印度向北漂移和有利的气候推动了多样化,为气候变化下的现代热带森林保护提供了见解。
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引用次数: 0
Disability in ecology and evolution. 生态和进化中的残疾。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-09-17 DOI: 10.1016/j.tree.2025.09.001
Ella Bowles, Taormina Lepore, Brooke M Fitzwater
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引用次数: 0
Zoogeochemical niche construction: how animal-mediated biogeochemistry affects evolution. 动物地球化学生态位构建:动物介导的生物地球化学如何影响进化。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-20 DOI: 10.1016/j.tree.2025.07.009
Kristy M Ferraro, Shawn J Leroux, Mark A Bradford, Oswald J Schmitz, Eric Vander Wal

Animals exert control over biogeochemical processes within their ecosystems - the study of which is called zoogeochemistry. However, most zoogeochemical research stops short of examining how animal-driven biogeochemical processes feed back to influence the fitness and population dynamics of organisms. We outline how to use niche construction theory to investigate these feedbacks, introducing zoogeochemical niche construction to explicitly link zoogeochemistry with fitness and evolution trajectories. We specifically highlight how this framework reveals the capacity of animals to influence their own nutritional landscapes, creating closed zoogeochemical loops. To identify and test instances of zoogeochemical niche construction, we present experimental, correlative, and comparative tools. The novel application of niche construction theory provides alternative and complementary explanations for animal trait evolution.

动物对其生态系统内的生物地球化学过程进行控制,这一研究被称为动物地球化学。然而,大多数动物地球化学研究都没有研究动物驱动的生物地球化学过程如何反馈影响生物的适应度和种群动态。我们概述了如何利用生态位构建理论来研究这些反馈,引入动物地球化学生态位构建来明确地将动物地球化学与适合度和进化轨迹联系起来。我们特别强调了这个框架如何揭示了动物影响其自身营养景观的能力,创造了封闭的动物地球化学循环。为了识别和测试动物地球化学生态位构建的实例,我们提出了实验的、相关的和比较的工具。生态位构建理论的新应用为动物特征进化提供了替代和补充的解释。
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引用次数: 0
The genomics of discrete polymorphisms maintained by disruptive selection. 由破坏性选择维持的离散多态性的基因组学。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-09-04 DOI: 10.1016/j.tree.2025.08.003
Jun Kitano, Kotaro Kagawa, Takashi Tsuchimatsu, Ryo Yamaguchi, Masato Yamamichi

Disruptive selection can lead to the evolution of discrete morphs. We show that particular genetic architectures, in terms of dominance, epistasis, and linkage, are likely to evolve to produce discrete morphs under disruptive selection. Recent genomic studies have revealed that causative mutations tend to cluster, sometimes as a result of chromosomal rearrangements, but we still know little about the molecular mechanisms of dominance and epistasis. Although disruptive selection can also lead to speciation, once an optimal genetic architecture has evolved, disruptive selection no longer promotes the evolution of assortative mating. For a better understanding of the conditions that promote or constrain speciation, it is necessary to address how fast such a genetic architecture can evolve.

破坏性选择可以导致离散形态的进化。我们表明,特定的遗传结构,在显性、上位性和连锁方面,可能在破坏性选择下进化产生离散的形态。最近的基因组研究表明,致病突变倾向于聚集,有时是染色体重排的结果,但我们对显性和上位性的分子机制仍然知之甚少。虽然破坏性选择也可以导致物种形成,一旦一个最优的遗传结构进化,破坏性选择不再促进进化的分类交配。为了更好地理解促进或限制物种形成的条件,有必要解决这种遗传结构的进化速度有多快。
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引用次数: 0
Safeguarding nocturnal pollinators for food security in sub-Saharan Africa. 为撒哈拉以南非洲的粮食安全保护夜间传粉媒介。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-09-03 DOI: 10.1016/j.tree.2025.08.002
Mark Otieno, Marcell K Peters, Ingolf Steffan-Dewenter

Nocturnal pollinators are vital for food security in sub-Saharan Africa, yet they face numerous threats, including habitat loss, light pollution, and climate change. Understanding these combined risks and implementing targeted management strategies to protect them is essential for ensuring sustainable agriculture, food security, and biodiversity in the region.

夜间传粉者对撒哈拉以南非洲的粮食安全至关重要,但它们面临着栖息地丧失、光污染和气候变化等诸多威胁。了解这些综合风险并实施有针对性的管理战略来保护它们,对于确保该地区的可持续农业、粮食安全和生物多样性至关重要。
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引用次数: 0
Optimal movement decisions in complex landscapes. 复杂景观中的最佳运动决策。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-22 DOI: 10.1016/j.tree.2025.07.010
Line S Cordes, Charles M Bishop, Luca Börger, Jacob Nabe-Nielsen, Stephanie M Harris

Understanding and predicting optimal movement decisions in complex and dynamic landscapes requires identifying the mechanisms driving movements, beyond correlations or simple energetic trade-offs between costs and gains. This is increasingly important as human activities transform landscapes at unprecedented rates, altering environmental predictability. As a result, animals must continually relearn and adapt to transformed, often degraded, environments, with consequences for their movement and fitness. We propose a structured movement framework that integrates abiotic and biotic drivers of foraging decisions. The net energyscape reflects spatial variation in net energy gains, while the optimal movement landscape includes non-energetic external modifiers, such as the landscape of fear. This framework opens improved avenues for more accurately identifying critical habitats and informing effective conservation strategies.

理解和预测复杂和动态景观中的最佳运动决策需要识别驱动运动的机制,而不仅仅是相关性或成本与收益之间的简单能量权衡。随着人类活动以前所未有的速度改变景观,改变环境的可预测性,这一点变得越来越重要。因此,动物必须不断地重新学习和适应变化的,通常是退化的环境,这对它们的运动和健康产生了影响。我们提出了一个结构化的运动框架,整合了觅食决策的非生物和生物驱动因素。净能量景观反映了净能量增益的空间变化,而最佳运动景观包括非能量外部修饰因子,如恐惧景观。该框架为更准确地识别关键栖息地和告知有效的保护策略开辟了更好的途径。
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引用次数: 0
Mycorrhizal allies: synergizing forest carbon and multifunctional restoration. 菌根同盟:森林碳协同与多功能恢复。
IF 17.3 1区 生物学 Q1 ECOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-13 DOI: 10.1016/j.tree.2025.07.004
Tengteng Li, Richard P Phillips, Matthias C Rillig, Gerrit Angst, E Toby Kiers, Paola Bonfante, Nico Eisenhauer, Zhanfeng Liu

While forest degradation persists across many regions, restoration efforts have predominantly targeted aboveground carbon, often overlooking critical belowground ecosystem functions. Plant-mycorrhizal associations - key connectors between aboveground and belowground biodiversity - can help to enhance both carbon storage and forest multifunctionality; yet their explicit integration into restoration frameworks remains limited. By synthesizing recent advancements, we highlight the role of plant-mycorrhizal diversity in enhancing soil carbon pools and supporting multiple ecosystem functions. By examining evidence-based restoration cases, we propose a framework linking plant-mycorrhizal associations to sustainably restore resilient and multifunctional forest ecosystems. Incorporating the functional traits of plant-mycorrhizal associations into restoration strategies provides a pathway to effectively address the interconnected biodiversity and climate crises.

虽然森林退化在许多地区持续存在,但恢复工作主要针对地上的碳,往往忽视了关键的地下生态系统功能。植物与菌根的联系——地上和地下生物多样性之间的关键联系——有助于提高碳储量和森林的多功能性;然而,它们与恢复框架的明确整合仍然有限。通过综合近年来的研究进展,我们强调了植物-菌根多样性在增强土壤碳库和支持多种生态系统功能方面的作用。通过研究基于证据的恢复案例,我们提出了一个框架,将植物-菌根关联与可持续恢复有弹性和多功能的森林生态系统联系起来。将植物-菌根关联的功能特征纳入恢复策略为有效解决生物多样性和气候危机提供了一条途径。
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Trends in ecology & evolution
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