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Refocusing the microbial rare biosphere concept through a functional lens 从功能角度重新审视微生物稀有生物圈概念
IF 16.8 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-09 DOI: 10.1016/j.tree.2024.06.005
Elena Litchman, Sébastien Villéger, Lucie Zinger, Jean-Christophe Auguet, Wilfried Thuiller, François Munoz, Nathan J.B. Kraft, Laurent Philippot, Cyrille Violle

The influential concept of the rare biosphere in microbial ecology has underscored the importance of taxa occurring at low abundances yet potentially playing key roles in communities and ecosystems. Here, we refocus the concept of rare biosphere through a functional trait-based lens and provide a framework to characterize microbial functional rarity, a combination of numerical scarcity across space or time and trait distinctiveness. We demonstrate how this novel interpretation of the rare biosphere, rooted in microbial functions, can enhance our mechanistic understanding of microbial community structure. It also sheds light on functionally distinct microbes, directing conservation efforts towards taxa harboring rare yet ecologically crucial functions.

微生物生态学中极具影响力的稀有生物圈概念强调了低丰度类群在群落和生态系统中发挥关键作用的重要性。在这里,我们通过基于功能性状的视角重新聚焦稀有生物圈的概念,并提供了一个表征微生物功能稀有性的框架,它是跨空间或时间的数量稀缺性与性状独特性的结合。我们展示了这种植根于微生物功能的对稀有生物圈的新诠释如何增强我们对微生物群落结构的机理理解。它还揭示了具有独特功能的微生物,引导我们对具有稀有但对生态至关重要的功能的类群进行保护。
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引用次数: 0
Advisory Board and Contents 咨询委员会和内容
IF 16.8 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-02 DOI: 10.1016/s0169-5347(24)00150-2
No Abstract
无摘要
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引用次数: 0
Subscription and Copyright Information 订阅和版权信息
IF 16.8 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-02 DOI: 10.1016/s0169-5347(24)00153-8
No Abstract
无摘要
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引用次数: 0
Linking nematodes and ecosystem function: a trait-based framework. 将线虫与生态系统功能联系起来:基于性状的框架。
IF 16.7 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-01 Epub Date: 2024-02-28 DOI: 10.1016/j.tree.2024.02.002
Chongzhe Zhang, Ian J Wright, Uffe N Nielsen, Stefan Geisen, Manqiang Liu

Trait-based approaches are being increasingly adopted to understand species' ecological strategies and how organisms influence ecosystem function. Trait-based research on soil organisms, however, remains poorly developed compared with that for plants. The abundant and diverse soil nematodes are prime candidates to advance trait-based approaches belowground, but a unified trait framework to describe nematode ecological strategies and assess their linkages with ecosystem function is lacking. We categorized nematode traits as morphological, physiological, life history, and community clusters, and proposed the nematode economics spectrum (NES) to better understand nematode ecological strategies and their association with ecosystem function. We argue that bridging the NES and the plant economics spectrum will facilitate a more holistic understanding of ecosystem carbon and nutrient cycling under global change.

人们越来越多地采用基于性状的方法来了解物种的生态策略以及生物如何影响生态系统的功能。然而,与植物研究相比,基于性状的土壤生物研究仍很落后。丰富多样的土壤线虫是在地下推进基于性状的方法的主要候选者,但目前还缺乏一个统一的性状框架来描述线虫的生态策略并评估其与生态系统功能的联系。我们将线虫性状分为形态、生理、生活史和群落群,并提出了线虫经济谱(NES),以更好地理解线虫生态策略及其与生态系统功能的关系。我们认为,连接线虫经济谱和植物经济谱将有助于更全面地了解全球变化下的生态系统碳和养分循环。
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引用次数: 0
Sexual selection and speciation in the Anthropocene. 人类世的性选择和物种分化。
IF 16.7 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-01 Epub Date: 2024-03-18 DOI: 10.1016/j.tree.2024.02.005
Janette W Boughman, Jack A Brand, Robert C Brooks, Russell Bonduriansky, Bob B M Wong

Anthropogenic change threatens global biodiversity by causing severe ecological disturbance and extinction. Here, we consider the effects of anthropogenic change on one process that generates biodiversity. Sexual selection (a potent evolutionary force and driver of speciation) is highly sensitive to the environment and, thus, vulnerable to anthropogenic ecological change. Anthropogenic alterations to sexual display and mate preference can make it harder to distinguish between conspecific and heterospecific mates or can weaken divergence via sexual selection, leading to higher rates of hybridization and biodiversity loss. Occasionally, anthropogenically altered sexual selection can abet diversification, but this appears less likely than biodiversity loss. In our rapidly changing world, a full understanding of sexual selection and speciation requires a global change perspective.

人为变化会造成严重的生态干扰和物种灭绝,从而威胁全球生物多样性。在此,我们将探讨人为变化对生物多样性产生过程的影响。性选择(一种强大的进化力量和物种分化的驱动力)对环境高度敏感,因此很容易受到人为生态变化的影响。人类活动对性表现和配偶偏好的改变会使同种配偶和异种配偶更难区分,或削弱通过性选择产生的分化,从而导致更高的杂交率和生物多样性的丧失。偶尔,人为改变的性选择也会促进生物多样化,但这种可能性似乎低于生物多样性的丧失。在我们这个瞬息万变的世界里,要全面了解性选择和物种分化,就必须从全球变化的角度来看待问题。
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引用次数: 0
Investigating the impacts of artificial light via blackouts. 通过停电调查人造光的影响。
IF 16.7 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-01 Epub Date: 2024-05-21 DOI: 10.1016/j.tree.2024.04.006
Arjun Amar, Chevonne Reynolds, Robert L Thomson, Davide Dominoni

Natural experiments provide remarkable opportunities to test the large-scale effects of human activities. Widespread energy blackouts offer such an 'experiment' to test the impacts of artificial light at night (ALAN) on wildlife. We use the situation in South Africa, where regular scheduled blackouts are being implemented, to highlight this opportunity.

自然实验为测试人类活动的大规模影响提供了难得的机会。大范围的能源停电就提供了这样一个 "实验 "来测试夜间人工照明(ALAN)对野生动物的影响。我们以南非的情况为例,该国正在实施定期计划停电,以突出这一机会。
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引用次数: 0
When indices disagree: facing conceptual and practical challenges. 当指数出现分歧时:面对概念和实际挑战。
IF 16.7 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-01 Epub Date: 2024-03-20 DOI: 10.1016/j.tree.2024.02.001
Carlos Alberto Arnillas, Kelly Carscadden

Hypothesis testing requires meaningful ways to quantify biological phenomena and account for alternative mechanisms that could explain the same pattern. Researchers combine experiments, statistics, and indices to account for these confounding mechanisms. Key concepts in ecology and evolution, such as niche breadth (NB) or fitness, can be represented by several indices, which often provide uncorrelated estimates. Is this because the indices use different types of noisy data or because the targeted phenomenon is complex and multidimensional? We discuss implications of these scenarios and propose five steps to aid researchers in identifying and combining indices, experiments, and statistics. Building on prior efforts to construct databases of hypotheses and indices and document assumptions, these steps help provide a formal strategy to reduce self-confirmatory bias.

假设检验需要有意义的方法来量化生物现象,并考虑可解释相同模式的其他机制。研究人员将实验、统计和指数结合起来,以考虑这些干扰机制。生态学和进化论中的关键概念,如生态位广度(NB)或适合度,可以用多个指数来表示,而这些指数往往提供不相关的估计值。这是因为这些指数使用了不同类型的噪声数据,还是因为目标现象复杂而多维?我们讨论了这些情况的影响,并提出了五个步骤来帮助研究人员识别和组合指数、实验和统计数据。这些步骤以之前构建假设和指数数据库并记录假设的工作为基础,有助于提供一种正式的策略来减少自我确认偏差。
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引用次数: 0
Problem-solving ability: a link between cognition and conservation? 解决问题的能力:认知与保护之间的联系?
IF 16.7 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-01 Epub Date: 2024-05-30 DOI: 10.1016/j.tree.2024.05.010
Amanda R Ridley, Elizabeth M Speechley

Traditionally, conservation and cognition have been disparate research disciplines. However, Audet et al.'s recent research contributes to an increasing body of evidence that innovative behaviours may determine the ability of species to respond to rapid environmental change, identifying an opportunity for cognition research to directly contribute to conservation outcomes.

传统上,自然保护与认知是两个不同的研究学科。然而,Audet 等人最近的研究为越来越多的证据做出了贡献,这些证据表明,创新行为可能决定物种应对快速环境变化的能力,为认知研究直接促进保护成果提供了机会。
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引用次数: 0
Ensuring legitimate project-level claims about net biodiversity outcomes. 确保项目层面对生物多样性净成果的合法主张。
IF 16.7 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-01 Epub Date: 2024-06-19 DOI: 10.1016/j.tree.2024.05.004
Laura J Sonter, Martine Maron, Anna Metaxas, Joseph W Bull

Renewable energy projects, such as wind farms and hydropower dams, can indirectly benefit biodiversity by mitigating climate change. However, we explain why such indirect benefits should not contribute towards the accounting of project-level net biodiversity outcomes and provide guidance on the steps needed to legitimately claim no-net-loss of biodiversity.

可再生能源项目(如风力发电场和水电大坝)可通过减缓气候变化间接惠及生物多样性。但是,我们解释了为什么此类间接效益不应计入项目层面的生物多样性净成果,并就合法主张生物多样性无净损失所需的步骤提供了指导。
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引用次数: 0
Effects of migratory animals on resident parasite dynamics. 迁徙动物对常驻寄生虫动态的影响。
IF 16.7 1区 生物学 Q1 ECOLOGY Pub Date : 2024-07-01 Epub Date: 2024-02-13 DOI: 10.1016/j.tree.2024.01.005
Jason E Donaldson, Vanessa O Ezenwa, Thomas A Morrison, Ricardo M Holdo

Migratory animals can bring parasites into resident animal (i.e., non-migratory) home ranges (transport effects) and exert trophic effects that either promote or reduce parasite exposure to resident hosts. Here, we examine the importance of these transport and trophic effects and their interactions for resident parasite dynamics. We propose that migrant transport and trophic effects are impacted by the number of migratory animals entering a resident's home range (migration intensity), the amount of time that migrants spend within a resident's home range (migration duration), and the timing of migrant-resident interactions. We then incorporate migration intensity, duration, and timing into a framework for exploring the net impact of migrant trophic and transport effects on resident animal parasite prevalence.

迁徙动物可将寄生虫带入常住动物(即非迁徙动物)的家园范围(迁移效应),并产生营养效应,促进或减少寄生虫与常住宿主的接触。在此,我们将研究这些迁移效应和营养效应及其相互作用对常驻寄生虫动态的重要性。我们认为,迁徙动物的迁移和营养效应受以下因素的影响:进入居民家园范围的迁徙动物数量(迁徙强度)、迁徙动物在居民家园范围内停留的时间(迁徙持续时间)以及迁徙动物与居民相互作用的时间。然后,我们将迁徙强度、迁徙持续时间和时间纳入一个框架,以探讨迁徙动物的营养和迁移效应对居民动物寄生虫流行的净影响。
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引用次数: 0
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Trends in ecology & evolution
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