首页 > 最新文献

The Plant Journal最新文献

英文 中文
Genes involved in small peptide biosynthesis are implicated in water stress responses of grapevine 参与小肽生物合成的基因与葡萄的水分胁迫反应有关
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-13 DOI: 10.1111/tpj.70641
Rochelle Schlank, David W. Jeffery, Catherine M. Kidman, Vinay Pagay

The hypothesis that small peptides in the CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) family are responsible for stomatal regulation under soil drying was tested in grapevine (Vitis vinifera L.). Potted Cabernet Sauvignon grapevines were subjected to water stress by withholding irrigation over a 10-day period followed by 6 days of holding stress and 10 days of recovery. Soil drying resulted in declines in leaf (ΨL) and stem (ΨS) water potentials and root and leaf hydraulic conductances. Near-complete stomatal closure occurred within 10 days of withholding water. Extending the duration of dry soil over an additional week had no additional effect on stomatal conductance (gs), but decreased ΨL and ΨS. Xylem sap abscisic acid (ABA) increased during peak water stress and declined during extended stress. Transcripts of CLE1, CLE3 and CLE6 followed the same patterns as ABA and its transcript NCED1, increasing as the soil dried and decreasing upon soil rehydration. Gene expression of CLE9 increased in both roots and leaves in response to soil drying, but, in contrast to the other CLE peptides, it remained high in the roots even after the vines recovered from water stress. The results indicate that CLE9 may be a key root-to-shoot signal of soil drying in grapevine. Together with the putative regulation of leaf ABA by CLE peptides, stomatal regulation is suggested to be indirectly controlled by root and leaf CLE9 under soil drying. An overall model of hydraulic and chemical signalling in grapevine under water stress that incorporates the role of CLE peptides is proposed.

以葡萄(Vitis vinifera L.)为研究对象,验证了CLAVATA3/EMBRYO SURROUNDING regional related (CLE)家族中的小肽参与土壤干燥条件下气孔调节的假说。盆栽赤霞珠(Cabernet Sauvignon)葡萄进行了为期10天的水胁迫,随后进行了6天的水胁迫和10天的恢复。土壤干燥导致叶片(ΨL)和茎(ΨS)水势以及根和叶的水力导度下降。截水后10天内气孔接近完全关闭。土壤干燥时间延长一周对气孔导度(gs)没有额外影响,但降低了ΨL和ΨS。木质部汁液脱落酸(ABA)在峰值水分胁迫期间升高,在延长胁迫期间下降。CLE1、CLE3和CLE6的转录本与ABA及其转录本NCED1的表达规律相同,随着土壤干燥而增加,随着土壤水化而减少。土壤干燥后,CLE9基因在根和叶中的表达均有所增加,但与其他CLE肽不同的是,即使藤蔓从水分胁迫中恢复过来,CLE9基因在根中的表达仍保持较高水平。结果表明,CLE9可能是葡萄根系对土壤干燥的关键信号。结合推测的CLE肽对叶片ABA的调控,认为土壤干燥条件下,根系和叶片的CLE9间接调控气孔发育。在水分胁迫下,葡萄藤的水力和化学信号的整体模型,包括CLE肽的作用提出。
{"title":"Genes involved in small peptide biosynthesis are implicated in water stress responses of grapevine","authors":"Rochelle Schlank,&nbsp;David W. Jeffery,&nbsp;Catherine M. Kidman,&nbsp;Vinay Pagay","doi":"10.1111/tpj.70641","DOIUrl":"https://doi.org/10.1111/tpj.70641","url":null,"abstract":"<div>\u0000 \u0000 <p>The hypothesis that small peptides in the CLAVATA3/EMBRYO SURROUNDING REGION-RELATED (CLE) family are responsible for stomatal regulation under soil drying was tested in grapevine (<i>Vitis vinifera</i> L.). Potted Cabernet Sauvignon grapevines were subjected to water stress by withholding irrigation over a 10-day period followed by 6 days of holding stress and 10 days of recovery. Soil drying resulted in declines in leaf (<i>Ψ</i><sub>L</sub>) and stem (<i>Ψ</i><sub>S</sub>) water potentials and root and leaf hydraulic conductances. Near-complete stomatal closure occurred within 10 days of withholding water. Extending the duration of dry soil over an additional week had no additional effect on stomatal conductance (<i>g</i><sub>s</sub>), but decreased <i>Ψ</i><sub>L</sub> and <i>Ψ</i><sub>S</sub>. Xylem sap abscisic acid (ABA) increased during peak water stress and declined during extended stress. Transcripts of <i>CLE1</i>, <i>CLE3</i> and <i>CLE6</i> followed the same patterns as ABA and its transcript <i>NCED1</i>, increasing as the soil dried and decreasing upon soil rehydration. Gene expression of <i>CLE9</i> increased in both roots and leaves in response to soil drying, but, in contrast to the other CLE peptides, it remained high in the roots even after the vines recovered from water stress. The results indicate that <i>CLE9</i> may be a key root-to-shoot signal of soil drying in grapevine. Together with the putative regulation of leaf ABA by CLE peptides, stomatal regulation is suggested to be indirectly controlled by root and leaf <i>CLE9</i> under soil drying. An overall model of hydraulic and chemical signalling in grapevine under water stress that incorporates the role of CLE peptides is proposed.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145751300","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SWI/SNF chromatin remodeling factor BRAHMA promotes de novo shoot regeneration by epigenetic priming via H3K27me3 removal SWI/SNF染色质重塑因子BRAHMA通过去除H3K27me3,通过表观遗传启动促进新生芽再生。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-13 DOI: 10.1111/tpj.70630
Ayaka Horie, Hikaru Sato, Takuya Sakamoto, Yayoi Inui, Mariana Diaz, Yutaka Suzuki, Sachihiro Matsunaga

Plants have a remarkable capacity for regeneration. Recent studies have identified associations between plant regeneration and epigenetic regulators, thereby supporting the hypothesis that dynamic gene expression changes occur during the regeneration process. Notably, the association with chromatin remodeling factors remains to be elucidated. In this study, we demonstrated that BRAHMA (BRM), a core ATPase of the BRM-associated SWI/SNF (BAS) chromatin remodeling complex, plays a crucial role in the shoot regeneration process via root-derived callus formation. Phenotypic and transcriptomic analyses demonstrated that BRM exerts a substantial effect on the transition of gene expression from callus formation to shoot regeneration. Furthermore, epigenomic analysis revealed that BRM contributes to the removal of the silencing mark H3K27me3 indirectly from shoot regeneration-related genes during callus formation, suggesting cooperative functions with plant-specific H3K27me3 demethylases. The transcriptional activation of shoot regeneration-related genes from which H3K27me3 was removed during callus formation did not occur until shoot induction. This suggests that BRM is involved in epigenetic priming, which puts shoot regeneration-related genes in a primed state that allows gene expression immediately after shoot induction. We identified 24 BRM-mediated epigenetic priming targets, which are not expressed during callus formation but are rapidly transcribed after shoot induction. Furthermore, out of these targets, the transcription factor NGATHA 3 (NGA3) and the glycine-rich protein DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1), are involved in the shoot regeneration process through epigenetic priming.

植物具有非凡的再生能力。最近的研究已经确定了植物再生与表观遗传调控因子之间的联系,从而支持了在再生过程中发生动态基因表达变化的假设。值得注意的是,与染色质重塑因子的关系仍有待阐明。在这项研究中,我们发现brma (BRM)是BRM相关的SWI/SNF (BAS)染色质重塑复合体的核心atp酶,在通过根源愈伤组织形成的茎再生过程中起着至关重要的作用。表型和转录组学分析表明,BRM对愈伤组织形成到茎再生的基因表达转变具有实质性影响。此外,表观基因组分析显示,BRM在愈伤组织形成过程中间接地从茎再生相关基因中去除沉默标记H3K27me3,这表明BRM与植物特异性H3K27me3去甲基化酶具有协同作用。在愈伤组织形成过程中去除H3K27me3的茎再生相关基因的转录激活直到茎诱导才发生。这表明BRM参与了表观遗传启动,使茎再生相关基因处于启动状态,使基因在茎诱导后立即表达。我们发现了24个brm介导的表观遗传启动靶点,这些靶点在愈伤组织形成过程中不表达,但在茎诱导后迅速转录。此外,在这些靶标中,转录因子NGATHA 3 (NGA3)和富含甘氨酸的蛋白质缺陷组织支流1 (DOT1)通过表观遗传启动参与了茎再生过程。
{"title":"SWI/SNF chromatin remodeling factor BRAHMA promotes de novo shoot regeneration by epigenetic priming via H3K27me3 removal","authors":"Ayaka Horie,&nbsp;Hikaru Sato,&nbsp;Takuya Sakamoto,&nbsp;Yayoi Inui,&nbsp;Mariana Diaz,&nbsp;Yutaka Suzuki,&nbsp;Sachihiro Matsunaga","doi":"10.1111/tpj.70630","DOIUrl":"10.1111/tpj.70630","url":null,"abstract":"<p>Plants have a remarkable capacity for regeneration. Recent studies have identified associations between plant regeneration and epigenetic regulators, thereby supporting the hypothesis that dynamic gene expression changes occur during the regeneration process. Notably, the association with chromatin remodeling factors remains to be elucidated. In this study, we demonstrated that BRAHMA (BRM), a core ATPase of the BRM-associated SWI/SNF (BAS) chromatin remodeling complex, plays a crucial role in the shoot regeneration process via root-derived callus formation. Phenotypic and transcriptomic analyses demonstrated that BRM exerts a substantial effect on the transition of gene expression from callus formation to shoot regeneration. Furthermore, epigenomic analysis revealed that BRM contributes to the removal of the silencing mark H3K27me3 indirectly from shoot regeneration-related genes during callus formation, suggesting cooperative functions with plant-specific H3K27me3 demethylases. The transcriptional activation of shoot regeneration-related genes from which H3K27me3 was removed during callus formation did not occur until shoot induction. This suggests that BRM is involved in epigenetic priming, which puts shoot regeneration-related genes in a primed state that allows gene expression immediately after shoot induction. We identified 24 BRM-mediated epigenetic priming targets, which are not expressed during callus formation but are rapidly transcribed after shoot induction. Furthermore, out of these targets, the transcription factor <i>NGATHA 3</i> (<i>NGA3</i>) and the glycine-rich protein <i>DEFECTIVELY ORGANIZED TRIBUTARIES 1</i> (<i>DOT1</i>), are involved in the shoot regeneration process through epigenetic priming.</p>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.70630","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145740277","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Editorial—Announcement of the 2025 TPJ fellows 社论- 2025年TPJ研究员公告。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-11 DOI: 10.1111/tpj.70643
Katherine Denby, Zhongchi Lui, Jörg Bohlmann, Alisdair R. Fernie

We are delighted to announce the recipients of the 2025 TPJ Fellowship awards are Mustafa Bulut and Yajun Wang.

Mustafa is a Research Group Leader at the MetaCom Program Center of the Leibniz Institute of Plant Biochemistry (IPB), Germany, where he leads the group Biochemical Genetics of Metabolic Plasticity. His research focuses on understanding how plants evolve metabolic diversity to withstand environmental challenges, with the broader aim of improving crop resilience, nutritional quality, and climate-smart agriculture. By integrating metabolomics, functional genomics, and evolutionary biology, his group investigates the genetic and biochemical basis of metabolic adaptations across diverse environments and species.

Congratulations to them both. We sincerely welcome Mustafa and Yajun to The Plant Journal team and look forward to supporting the advance of their already impressive scientific careers.

我们很高兴地宣布,2025年TPJ奖学金的获得者是Mustafa Bulut和王亚军。Mustafa是德国莱布尼茨植物生物化学研究所(IPB) MetaCom项目中心的研究小组组长,在那里他领导了代谢可塑性的生化遗传学小组。他的研究重点是了解植物如何进化代谢多样性以抵御环境挑战,其更广泛的目标是提高作物的适应力、营养质量和气候智能型农业。通过整合代谢组学、功能基因组学和进化生物学,他的团队研究了不同环境和物种的代谢适应的遗传和生化基础。恭喜他们俩。我们真诚地欢迎Mustafa和Yajun加入Plant Journal团队,并期待着支持他们已经令人印象深刻的科学事业的发展。
{"title":"Editorial—Announcement of the 2025 TPJ fellows","authors":"Katherine Denby,&nbsp;Zhongchi Lui,&nbsp;Jörg Bohlmann,&nbsp;Alisdair R. Fernie","doi":"10.1111/tpj.70643","DOIUrl":"10.1111/tpj.70643","url":null,"abstract":"<p>We are delighted to announce the recipients of the 2025 TPJ Fellowship awards are <b>Mustafa Bulut</b> and <b>Yajun Wang</b>.</p><p><b>Mustafa</b> is a Research Group Leader at the MetaCom Program Center of the Leibniz Institute of Plant Biochemistry (IPB), Germany, where he leads the group Biochemical Genetics of Metabolic Plasticity. His research focuses on understanding how plants evolve metabolic diversity to withstand environmental challenges, with the broader aim of improving crop resilience, nutritional quality, and climate-smart agriculture. By integrating metabolomics, functional genomics, and evolutionary biology, his group investigates the genetic and biochemical basis of metabolic adaptations across diverse environments and species.</p><p>Congratulations to them both. We sincerely welcome Mustafa and Yajun to The Plant Journal team and look forward to supporting the advance of their already impressive scientific careers.</p>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.70643","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145740347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Lotus japonicus alpha-expansin EXPA1 is recruited during intracellular and intercellular rhizobial colonization 荷花α -扩张蛋白EXPA1在细胞内和细胞间的根瘤菌定植过程中被募集。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-11 DOI: 10.1111/tpj.70639
Jesús Montiel, Ivette García-Soto, Elizabeth Monroy-Morales, Beatrice Lace, Mariana Robledo-Gamboa, Mads Vestergaard, Niels Sandal, Thomas Ott, Jens Stougaard

Most legumes establish a mutualistic association with rhizobia, a group of nitrogen-fixing bacteria. In Lotus japonicus, the symbiotic colonization occurs intracellularly, via root hair infection threads by Mesorhizobium loti, or intercellularly, with Agrobacterium pusense IRBG74. In both mechanisms, cell wall remodeling is presumably an essential process. In plants, α-expansins (EXPA) promote cell wall loosening by non-enzymatically triggering a pH-dependent relaxation. In this study, we show that LjEXPA1 is critical for the intracellular and intercellular symbiotic program in L. japonicus. Promoter activity and subcellular localization analyses revealed that EXPA1 is recruited at essential compartments and structures of epidermal and cortical cells in both mechanisms of rhizobial infection, such as the infection chambers, infection pockets, and transcellular infection threads. Additionally, EXPA1-YFP abundantly accumulated in dividing cortical cells during nodule formation. The expression profile of EXPA1 correlates with the symbiotic phenotype observed in homozygous mutants disrupted in the EXPA1 gene (expA1-1 and expA1-2). Infection thread formation and intercellular colonization were drastically reduced in expA1-1 and expA1-2 mutants, compared with wild-type plants. Similarly, nodule formation was significantly reduced in these mutants after M. loti or IRBG74 inoculation. Our results indicate that non-enzymatic cell wall remodeling by the α-expansin EXPA1 is crucial for the successful establishment of Lotus–rhizobia symbiosis, regardless of the infection mechanism.

大多数豆科植物与根瘤菌(一组固氮细菌)建立了共生关系。在日本莲中,共生定植发生在细胞内,通过根毛侵染线,由loti中根瘤菌,或与pusense农杆菌IRBG74细胞间。在这两种机制中,细胞壁重塑可能是一个必要的过程。在植物中,α-扩张素(EXPA)通过非酶促ph依赖性松弛来促进细胞壁松动。在这项研究中,我们发现LjEXPA1在日本扁桃胞内和胞间共生程序中起着关键作用。启动子活性和亚细胞定位分析表明,EXPA1在根瘤菌感染的两种机制(如感染室、感染袋和跨细胞感染线)中被募集到表皮和皮质细胞的基本区室和结构中。此外,在结节形成过程中,EXPA1-YFP在皮质细胞分裂中大量积累。在EXPA1基因断裂的纯合突变体(EXPA1 -1和EXPA1 -2)中,EXPA1的表达谱与共生表型相关。与野生型相比,expA1-1和expA1-2突变体的侵染线形成和细胞间定植明显减少。同样,接种M. loti或IRBG74后,这些突变体的结节形成显著减少。我们的研究结果表明,无论感染机制如何,α-扩张蛋白EXPA1的非酶细胞壁重塑对莲藕-根瘤菌共生的成功建立至关重要。
{"title":"The Lotus japonicus alpha-expansin EXPA1 is recruited during intracellular and intercellular rhizobial colonization","authors":"Jesús Montiel,&nbsp;Ivette García-Soto,&nbsp;Elizabeth Monroy-Morales,&nbsp;Beatrice Lace,&nbsp;Mariana Robledo-Gamboa,&nbsp;Mads Vestergaard,&nbsp;Niels Sandal,&nbsp;Thomas Ott,&nbsp;Jens Stougaard","doi":"10.1111/tpj.70639","DOIUrl":"10.1111/tpj.70639","url":null,"abstract":"<p>Most legumes establish a mutualistic association with rhizobia, a group of nitrogen-fixing bacteria. In <i>Lotus japonicus</i>, the symbiotic colonization occurs intracellularly, via root hair infection threads by <i>Mesorhizobium loti</i>, or intercellularly, with <i>Agrobacterium pusense</i> IRBG74. In both mechanisms, cell wall remodeling is presumably an essential process. In plants, α-expansins (EXPA) promote cell wall loosening by non-enzymatically triggering a pH-dependent relaxation. In this study, we show that LjEXPA1 is critical for the intracellular and intercellular symbiotic program in <i>L. japonicus</i>. Promoter activity and subcellular localization analyses revealed that EXPA1 is recruited at essential compartments and structures of epidermal and cortical cells in both mechanisms of rhizobial infection, such as the infection chambers, infection pockets, and transcellular infection threads. Additionally, EXPA1-YFP abundantly accumulated in dividing cortical cells during nodule formation. The expression profile of <i>EXPA1</i> correlates with the symbiotic phenotype observed in homozygous mutants disrupted in the <i>EXPA</i>1 gene (<i>expA1</i>-1 and <i>expA1</i>-2). Infection thread formation and intercellular colonization were drastically reduced in <i>expA1</i>-1 and <i>expA1</i>-2 mutants, compared with wild-type plants. Similarly, nodule formation was significantly reduced in these mutants after <i>M. loti</i> or IRBG74 inoculation. Our results indicate that non-enzymatic cell wall remodeling by the α-expansin EXPA1 is crucial for the successful establishment of <i>Lotus–rhizobia</i> symbiosis, regardless of the infection mechanism.</p>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.70639","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145740291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The OsMPK9–OsCDR1 module regulates abiotic stress responses in rice OsMPK9-OsCDR1模块调节水稻的非生物胁迫响应。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-10 DOI: 10.1111/tpj.70627
Haitao Wang, Shijie Chen, Wenjie Zhu, Ranran Zhao, Enhe Wang, Xuanlin Gao, Wenzhu Jiang, Tao Wu, Xinglin Du

Rice (Oryza sativa L.), originating from tropical and subtropical regions, is a cold-sensitive and water-demanding crop whose yield and quality are severely compromised by chilling injury or water deficits during growth and development. In this study, we systematically characterized Cold and Drought Resistance 1 (OsCDR1), a nucleus-localized transcription activator belonging to the bZIP transcription factor family. OsCDR1 overexpression enhances rice tolerance to cold and drought stress, whereas knockout mutants of OsCDR1 exhibit reduced resistance to low temperatures and drought conditions. Furthermore, OsCDR1 positively regulates abscisic acid (ABA) signaling in rice, and mediates ABA-regulated drought tolerance responses in rice. Integrated RNA-seq and CUT&Tag analyses demonstrated that OsCDR1 coordinates with ABA-dependent (PIP2;2) and -independent genes (DREB1J). OsCDR1 specifically binds to the G-box cis-element in the promoters of PIP2;2 and DREB1J, thereby activating their transcription and regulating the abiotic stress responses in rice. Protein interaction analysis revealed that OsCDR1 interacts with the kinase OsMPK9 in vivo and in vitro, and a dual-luciferase reporter assay showed that OsMPK9 and OsCDR1 regulate the transcription of DREB1J and PIP2;2 in the same functional pathway. Overexpression of OsMPK9 inhibits ABA responses in rice and reduces cold and drought tolerance. Our findings establish the OsMPK9–OsCDR1 module as a critical hub connecting ABA signaling to abiotic stress resilience, providing new insights for breeding crops.

水稻(Oryza sativa L.)原产于热带和亚热带地区,是一种对冷敏感和需水的作物,在生长发育过程中,冷害或缺水严重影响其产量和品质。在这项研究中,我们系统地鉴定了一个核定位的转录激活子OsCDR1 (Cold and Drought Resistance 1,简称OsCDR1),它属于bZIP转录因子家族。OsCDR1过表达增强了水稻对寒冷和干旱胁迫的耐受性,而OsCDR1基因敲除突变体对低温和干旱条件的抗性降低。此外,OsCDR1正调控水稻脱落酸(ABA)信号,介导ABA调控的水稻抗旱反应。综合RNA-seq和CUT&Tag分析表明,OsCDR1与aba依赖基因(PIP2;2)和aba独立基因(DREB1J)协调。OsCDR1特异性结合PIP2启动子中的G-box顺式元件;2和DREB1J,从而激活它们的转录,调节水稻的非生物胁迫反应。蛋白相互作用分析显示,在体内和体外,OsCDR1与激酶OsMPK9相互作用,双荧光素酶报告基因实验显示,OsMPK9和OsCDR1调节DREB1J和PIP2的转录;2在相同的功能途径。OsMPK9的过表达抑制了水稻对ABA的反应,降低了水稻的耐旱性和耐寒性。我们的研究结果表明,OsMPK9-OsCDR1模块是连接ABA信号与非生物胁迫抗性的关键枢纽,为作物育种提供了新的见解。
{"title":"The OsMPK9–OsCDR1 module regulates abiotic stress responses in rice","authors":"Haitao Wang,&nbsp;Shijie Chen,&nbsp;Wenjie Zhu,&nbsp;Ranran Zhao,&nbsp;Enhe Wang,&nbsp;Xuanlin Gao,&nbsp;Wenzhu Jiang,&nbsp;Tao Wu,&nbsp;Xinglin Du","doi":"10.1111/tpj.70627","DOIUrl":"10.1111/tpj.70627","url":null,"abstract":"<div>\u0000 \u0000 <p>Rice (<i>Oryza sativa</i> L.), originating from tropical and subtropical regions, is a cold-sensitive and water-demanding crop whose yield and quality are severely compromised by chilling injury or water deficits during growth and development. In this study, we systematically characterized Cold and Drought Resistance 1 (OsCDR1), a nucleus-localized transcription activator belonging to the bZIP transcription factor family. <i>OsCDR1</i> overexpression enhances rice tolerance to cold and drought stress, whereas knockout mutants of <i>OsCDR1</i> exhibit reduced resistance to low temperatures and drought conditions. Furthermore, OsCDR1 positively regulates abscisic acid (ABA) signaling in rice, and mediates ABA-regulated drought tolerance responses in rice. Integrated RNA-seq and CUT&amp;Tag analyses demonstrated that OsCDR1 coordinates with ABA-dependent (<i>PIP2;2</i>) and -independent genes (<i>DREB1J</i>). OsCDR1 specifically binds to the G-box cis-element in the promoters of <i>PIP2;2</i> and <i>DREB1J</i>, thereby activating their transcription and regulating the abiotic stress responses in rice. Protein interaction analysis revealed that OsCDR1 interacts with the kinase OsMPK9 <i>in vivo</i> and <i>in vitro</i>, and a dual-luciferase reporter assay showed that OsMPK9 and OsCDR1 regulate the transcription of <i>DREB1J</i> and <i>PIP2;2</i> in the same functional pathway. Overexpression of <i>OsMPK9</i> inhibits ABA responses in rice and reduces cold and drought tolerance. Our findings establish the OsMPK9–OsCDR1 module as a critical hub connecting ABA signaling to abiotic stress resilience, providing new insights for breeding crops.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145719967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The SCOOP12-MIK2 module regulates Arabidopsis root meristem development via the PLETHORA transcription factors SCOOP12-MIK2模块通过过多的转录因子调控拟南芥根分生组织的发育。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-09 DOI: 10.1111/tpj.70633
Meng Chen, Xian Wang, Kai Pan, Mengjuan Kong, Ji She, Zhong Zhao, Shutang Tan

Plants have evolved intricate mechanisms to balance growth and defense through complex signaling networks. Previous studies have focused on aerial parts or crop yield, but little is known about the regulation of root growth under pathogen attack. Here, we report that the SERINE RICH ENDOGENOUS PEPTIDE12 (SCOOP12) immune signaling peptide regulates root meristem development via the receptor-like kinase MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2 (MIK2) and the MAPK cascade in Arabidopsis. We demonstrated that SCOOP12 treatment reduced the number of root meristematic cells by suppressing the expression of key molecular regulators, including PLETHORA1 (PLT1) and PLT2, which are essential for maintaining root stem cell niche (SCN) activity. Physiological and cell biological experiments revealed that MIK2 and MPK6 are required for SCOOP12-mediated root growth regulation, as the mik2 and mpk6 mutants presented reduced sensitivity to SCOOP12-induced effects. Further biochemical evidence indicates that MPK6 directly phosphorylates PLT1 and PLT2. The plt1-4 plt2-2 double mutant also presented diminished responses to SCOOP12, confirming the central role of PLT1/2 in this regulatory network. Our work elucidated a molecular pathway through which SCOOP12 modulates root meristem activity, providing insights into the trade-off between plant growth and immunity.

植物已经进化出复杂的机制,通过复杂的信号网络来平衡生长和防御。以往的研究主要集中在地上部分或作物产量上,但对病原菌侵染下根系生长的调控知之甚少。在这里,我们报道了富含丝氨酸的内源性肽12 (SCOOP12)免疫信号肽通过受体样激酶MALE DISCOVERER 1-相互作用受体样激酶2 (MIK2)和MAPK级联调节根分生组织的发育。我们证明,SCOOP12处理通过抑制关键分子调控因子的表达来减少根分生细胞的数量,包括PLETHORA1 (PLT1)和PLT2,这是维持根干细胞生态位(SCN)活性所必需的。生理学和细胞生物学实验表明,由于MIK2和MPK6突变体对scoop12诱导的影响敏感性降低,因此MIK2和MPK6是scoop12介导的根生长调节所必需的。进一步的生化证据表明MPK6直接磷酸化PLT1和PLT2。plt1-4 - plt2-2双突变体对SCOOP12的反应也减弱,证实了PLT1/2在该调控网络中的核心作用。我们的工作阐明了SCOOP12调节根分生组织活性的分子途径,为植物生长和免疫之间的权衡提供了见解。
{"title":"The SCOOP12-MIK2 module regulates Arabidopsis root meristem development via the PLETHORA transcription factors","authors":"Meng Chen,&nbsp;Xian Wang,&nbsp;Kai Pan,&nbsp;Mengjuan Kong,&nbsp;Ji She,&nbsp;Zhong Zhao,&nbsp;Shutang Tan","doi":"10.1111/tpj.70633","DOIUrl":"10.1111/tpj.70633","url":null,"abstract":"<div>\u0000 \u0000 <p>Plants have evolved intricate mechanisms to balance growth and defense through complex signaling networks. Previous studies have focused on aerial parts or crop yield, but little is known about the regulation of root growth under pathogen attack. Here, we report that the SERINE RICH ENDOGENOUS PEPTIDE12 (SCOOP12) immune signaling peptide regulates root meristem development via the receptor-like kinase MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2 (MIK2) and the MAPK cascade in <i>Arabidopsis</i>. We demonstrated that SCOOP12 treatment reduced the number of root meristematic cells by suppressing the expression of key molecular regulators, including PLETHORA1 (PLT1) and PLT2, which are essential for maintaining root stem cell niche (SCN) activity. Physiological and cell biological experiments revealed that MIK2 and MPK6 are required for SCOOP12-mediated root growth regulation, as the <i>mik2</i> and <i>mpk6</i> mutants presented reduced sensitivity to SCOOP12-induced effects. Further biochemical evidence indicates that MPK6 directly phosphorylates PLT1 and PLT2. The <i>plt1-4 plt2-2</i> double mutant also presented diminished responses to SCOOP12, confirming the central role of PLT1/2 in this regulatory network. Our work elucidated a molecular pathway through which SCOOP12 modulates root meristem activity, providing insights into the trade-off between plant growth and immunity.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145712953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative genomic analysis of Acer tsinglingense and A. davidii provides insights into nervonic acid biosynthesis, population evolution and genome vulnerability of endangered A. tsinglingense 通过对青岛槭和大叶槭的基因组比较分析,为了解濒危物种青岛槭神经酸的生物合成、种群进化和基因组易感性提供了新的思路。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-09 DOI: 10.1111/tpj.70625
Xin Meng, Jordi López-Pujol, Qi-Jing Zhang, Ming Yue, Zhong-Hu Li

Global biodiversity is facing threats from climate change, habitat fragmentation, and anthropogenic activities—pressures that particularly endanger endemic and narrowly distributed species. In this study, the high-quality chromosome-level genomes of two ecologically divergent maples were assembled: the endangered and range-restricted Acer tsinglingense (791.40 Mb) and its widespread congener Acer davidii (1291.99 Mb). Phylogenomic analysis indicates that the two species diverged ~16.3 million years ago, with A. tsinglingense showing notable gene family expansions in secondary metabolite pathways. Notably, the 3-ketoacyl-CoA synthase gene family, which is involved in nervonic acid biosynthesis, underwent significant expansion and tandem duplication in A. tsinglingense, exhibiting high expression in buds. Population genomic analysis revealed that, compared with the widely distributed A. davidii, A. tsinglingense possesses lower genetic diversity, higher harmful mutation load, and signatures of a severe population bottleneck during the Late Pleistocene. Genome–environment association analysis further identified climate-adaptive genomic variations linked to five key environmental factors and projected potential genomic offsets under future climate scenarios. The southern lineage of A. tsinglingense exhibited greater climate sensitivity and genomic vulnerability under strong selective pressures, underscoring its importance as a conservation priority. Our research reveals that metabolic specializations in A. tsinglingense (such as the synthesis of nervonic acid) may confer competitive advantages in specific habitats. However, factors including its restricted distribution, historical population bottlenecks, and accumulated genetic load severely constrain its evolutionary potential to cope with rapid climate change. These findings emphasize the importance of elucidating the genomic basis and mechanisms of endangerment in metabolically specialized and threatened plant species to inform effective conservation strategies.

全球生物多样性正面临着来自气候变化、栖息地破碎化和人为活动的威胁,这些压力尤其危及地方性和狭窄分布的物种。本研究组装了两种生态分化槭树的高质量染色体水平基因组:濒危和范围受限的青岛槭(791.40 Mb)和广泛分布的同源槭(1291.99 Mb)。系统基因组学分析表明,这两个物种早在1630万年前就已分化,其中青松在次生代谢途径上表现出明显的基因家族扩展。值得注意的是,参与神经酸生物合成的3-酮酰基辅酶a合成酶基因家族在青岛青花中进行了显著的扩增和串联复制,并在芽中高表达。种群基因组分析表明,与分布广泛的大叶茅相比,青叶茅具有较低的遗传多样性和较高的有害突变负荷,具有严重的晚更新世种群瓶颈特征。基因组-环境关联分析进一步确定了与五个关键环境因素相关的气候适应性基因组变异,并预测了未来气候情景下潜在的基因组抵消。南方系在强选择压力下表现出更强的气候敏感性和基因组脆弱性,强调了其作为优先保护对象的重要性。我们的研究表明,青松的代谢特化(如神经酸的合成)可能在特定的栖息地赋予竞争优势。然而,其有限的分布、历史种群瓶颈和累积的遗传负荷等因素严重制约了其应对快速气候变化的进化潜力。这些发现强调了阐明代谢特化和受威胁植物物种濒危的基因组基础和机制对于制定有效的保护策略的重要性。
{"title":"Comparative genomic analysis of Acer tsinglingense and A. davidii provides insights into nervonic acid biosynthesis, population evolution and genome vulnerability of endangered A. tsinglingense","authors":"Xin Meng,&nbsp;Jordi López-Pujol,&nbsp;Qi-Jing Zhang,&nbsp;Ming Yue,&nbsp;Zhong-Hu Li","doi":"10.1111/tpj.70625","DOIUrl":"10.1111/tpj.70625","url":null,"abstract":"<div>\u0000 \u0000 <p>Global biodiversity is facing threats from climate change, habitat fragmentation, and anthropogenic activities—pressures that particularly endanger endemic and narrowly distributed species. In this study, the high-quality chromosome-level genomes of two ecologically divergent maples were assembled: the endangered and range-restricted <i>Acer tsinglingense</i> (791.40 Mb) and its widespread congener <i>Acer davidii</i> (1291.99 Mb). Phylogenomic analysis indicates that the two species diverged ~16.3 million years ago, with <i>A. tsinglingense</i> showing notable gene family expansions in secondary metabolite pathways. Notably, the 3-ketoacyl-CoA synthase gene family, which is involved in nervonic acid biosynthesis, underwent significant expansion and tandem duplication in <i>A. tsinglingense</i>, exhibiting high expression in buds. Population genomic analysis revealed that, compared with the widely distributed <i>A. davidii</i>, <i>A. tsinglingense</i> possesses lower genetic diversity, higher harmful mutation load, and signatures of a severe population bottleneck during the Late Pleistocene. Genome–environment association analysis further identified climate-adaptive genomic variations linked to five key environmental factors and projected potential genomic offsets under future climate scenarios. The southern lineage of <i>A. tsinglingense</i> exhibited greater climate sensitivity and genomic vulnerability under strong selective pressures, underscoring its importance as a conservation priority. Our research reveals that metabolic specializations in <i>A. tsinglingense</i> (such as the synthesis of nervonic acid) may confer competitive advantages in specific habitats. However, factors including its restricted distribution, historical population bottlenecks, and accumulated genetic load severely constrain its evolutionary potential to cope with rapid climate change. These findings emphasize the importance of elucidating the genomic basis and mechanisms of endangerment in metabolically specialized and threatened plant species to inform effective conservation strategies.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145712809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptomic and enzymological evidence for plastid peptidoglycan synthesis in the gymnosperm Picea abies 裸子植物云杉质体肽聚糖合成的转录组学和酶学证据
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-06 DOI: 10.1111/tpj.70588
Yayoi Sugita, Amanda J. Dowson, Ichiro Kajisa, Katsuaki Takechi, Yilan E, Jingzhi Zhao, Jiaqi Wang, Xiaofei Lin, Laura Diaz-Saez, Adrian J. Lloyd, Christopher G. Dowson, Hiroyoshi Takano

It is understood that a cyanobacterium was the progenitor of plastids and that the biosynthesis of cell wall peptidoglycan was lost during chloroplast evolution. However, accumulated data, especially from the moss Physcomitrium patens, suggest that peptidoglycan remains essential for plastid division in some land plants. A fundamental set of peptidoglycan biosynthesis (Mur) genes has been identified in the genomes of these land plants, while many angiosperms no longer encode some core Mur genes, including a bifunctional penicillin-binding protein (PBP). Ten incomplete Mur genes were previously identified in the genome of the gymnosperm Picea abies but these could be pseudogenes or encode proteins that have been repurposed. For instance, mutant albino maize and Arabidopsis seedlings possess a defective UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--2,6-diaminopimelate ligase (MurE), an intact MurE ligase being essential for peptidoglycan synthesis. In this study, we isolated a full set of cDNAs for peptidoglycan biosynthesis from P. abies. GFP fusion proteins with either P. abies (Pa)MurE or PaPBP were detected in chloroplasts. Cross-species complementation assays with PaMurE in Arabidopsis albino MurE mutants and Physcomitrium MurE chloroplast division mutants showed that the gymnosperm MurE completely rescued both mutant phenotypes. Enzymatic assay of recombinant PaMurE proteins revealed they catalyze the same reaction performed by their bacterial MurE homologs. Moreover, the expression of the PaPbp cDNA partially rescued the giant chloroplast phenotype in the moss Pbp knockout line. These results are consistent with the operation of a functional Mur gene set in the Norway spruce genome.

据了解,蓝藻是质体的祖先,而细胞壁肽聚糖的生物合成在叶绿体进化过程中丢失。然而,积累的数据,特别是来自藓类直胞菌的数据表明,在一些陆地植物中,肽聚糖仍然是质体分裂所必需的。在这些陆地植物的基因组中已经鉴定出一组基本的肽聚糖生物合成(Mur)基因,而许多被子植物不再编码一些核心的Mur基因,包括双功能青霉素结合蛋白(PBP)。以前在裸子植物云杉的基因组中发现了10个不完整的Mur基因,但这些基因可能是假基因,也可能是编码蛋白质的基因。例如,突变型白化玉米和拟南芥幼苗具有缺陷的udp - n -乙酰muramyl -l-alanyl-d-谷氨酸-2,6-二氨基磺酸连接酶(MurE),一个完整的MurE连接酶是肽聚糖合成所必需的。在这项研究中,我们分离了一套完整的用于多肽聚糖生物合成的cdna。在叶绿体中检测到与冷杉芽孢杆菌(Pa)MurE或PaPBP的GFP融合蛋白。利用PaMurE对拟南芥白化MurE突变体和假胞菌MurE叶绿体分裂突变体进行的跨种互补实验表明,裸子植物MurE完全挽救了这两种突变体的表型。重组PaMurE蛋白的酶促分析表明,它们催化的反应与细菌的MurE同源物相同。此外,PaPbp cDNA的表达部分挽救了苔藓Pbp敲除系的巨叶绿体表型。这些结果与挪威云杉基因组中功能性Mur基因的操作一致。
{"title":"Transcriptomic and enzymological evidence for plastid peptidoglycan synthesis in the gymnosperm Picea abies","authors":"Yayoi Sugita,&nbsp;Amanda J. Dowson,&nbsp;Ichiro Kajisa,&nbsp;Katsuaki Takechi,&nbsp;Yilan E,&nbsp;Jingzhi Zhao,&nbsp;Jiaqi Wang,&nbsp;Xiaofei Lin,&nbsp;Laura Diaz-Saez,&nbsp;Adrian J. Lloyd,&nbsp;Christopher G. Dowson,&nbsp;Hiroyoshi Takano","doi":"10.1111/tpj.70588","DOIUrl":"https://doi.org/10.1111/tpj.70588","url":null,"abstract":"<p>It is understood that a cyanobacterium was the progenitor of plastids and that the biosynthesis of cell wall peptidoglycan was lost during chloroplast evolution. However, accumulated data, especially from the moss <i>Physcomitrium patens</i>, suggest that peptidoglycan remains essential for plastid division in some land plants. A fundamental set of peptidoglycan biosynthesis (<i>Mur</i>) genes has been identified in the genomes of these land plants, while many angiosperms no longer encode some core <i>Mur</i> genes, including a bifunctional penicillin-binding protein (PBP). Ten incomplete <i>Mur</i> genes were previously identified in the genome of the gymnosperm <i>Picea abies</i> but these could be pseudogenes or encode proteins that have been repurposed. For instance, mutant albino maize and Arabidopsis seedlings possess a defective UDP-N-acetylmuramoyl-<span>l</span>-alanyl-<span>d</span>-glutamate--2,6-diaminopimelate ligase (MurE), an intact MurE ligase being essential for peptidoglycan synthesis. In this study, we isolated a full set of cDNAs for peptidoglycan biosynthesis from <i>P. abies</i>. GFP fusion proteins with either <i>P. abies</i> (Pa)MurE or PaPBP were detected in chloroplasts. Cross-species complementation assays with <i>PaMurE</i> in Arabidopsis albino <i>MurE</i> mutants and Physcomitrium <i>MurE</i> chloroplast division mutants showed that the gymnosperm <i>MurE</i> completely rescued both mutant phenotypes. Enzymatic assay of recombinant PaMurE proteins revealed they catalyze the same reaction performed by their bacterial MurE homologs. Moreover, the expression of the <i>PaPbp</i> cDNA partially rescued the giant chloroplast phenotype in the moss <i>Pbp</i> knockout line. These results are consistent with the operation of a functional <i>Mur</i> gene set in the Norway spruce genome.</p>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.70588","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145695204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ECT10 is an m6A reader that negatively regulates the drought stress response in Arabidopsis by modulating mRNA stability ECT10是一个m6A读取器,通过调节mRNA稳定性负向调节拟南芥干旱胁迫反应
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-06 DOI: 10.1111/tpj.70637
Rongpeng Han, Thi Kim Hang Nguyen, Zhengmei Yang, Hunseung Kang

N6-methyladenosine (m6A) modification occurs prevalently in eukaryotic mRNAs and is a key epitranscriptomic mechanism regulating plant development and stress responses. The m6A mark is interpreted by ‘readers’ that recognize and bind to m6A-modified RNAs. Recent studies highlight Evolutionarily Conserved C-terminal region (ECT) proteins as m6A readers in various plant species. However, the functions of many ECT proteins remain unknown. Therefore, this study aims to determine the role of ECT10 as an m6A reader and to evaluate its function in drought stress response in Arabidopsis. The electrophoretic mobility shift assay demonstrated that ECT10 specifically binds to m6A-modified RNAs but not to m5C-modified RNAs in vitro. The expression of ECT10 decreased markedly under drought stress conditions. The ect10 loss-of-function mutant exhibited reduced sensitivity to drought stress. Complementation lines expressing the native ECT10 in the ect10 mutant background restored the wild-type phenotype, while lines expressing the mutant mECT10, harboring substitutions at two critical amino acid residues, failed to rescue the phenotype. ECT10 regulated the expression of several m6A-modified positive or negative regulators of the drought stress response by modulating their stability through direct binding to these m6A-modified transcripts in planta. Collectively, these findings establish ECT10 as a novel m6A reader crucial for drought stress response by modulating mRNA stability.

n6 -甲基腺苷(m6A)修饰普遍存在于真核mrna中,是调控植物发育和胁迫反应的关键外转录组机制。m6A标记由识别并结合m6A修饰rna的“读取器”解释。最近的研究表明,进化保守的c -末端区(ECT)蛋白在多种植物中作为m6A读取器。然而,许多ECT蛋白的功能尚不清楚。因此,本研究旨在确定ECT10作为m6A读取器的作用,并评估其在拟南芥干旱胁迫响应中的功能。电泳迁移率转移实验表明,在体外,ECT10特异性结合m6a修饰的rna,而不是m5c修饰的rna。干旱胁迫条件下,ECT10的表达显著降低。功能缺失突变体ect10对干旱胁迫的敏感性降低。在ECT10突变背景下表达原生ECT10的互补系恢复了野生型表型,而表达突变体mECT10的系,在两个关键氨基酸残基上进行了替换,未能恢复表型。ECT10通过直接与植物中m6a修饰的转录本结合,调节干旱胁迫反应中几种m6a修饰的阳性或阴性调节因子的表达,从而调节它们的稳定性。总的来说,这些发现表明ECT10是一种新的m6A读取器,通过调节mRNA的稳定性对干旱胁迫反应至关重要。
{"title":"ECT10 is an m6A reader that negatively regulates the drought stress response in Arabidopsis by modulating mRNA stability","authors":"Rongpeng Han,&nbsp;Thi Kim Hang Nguyen,&nbsp;Zhengmei Yang,&nbsp;Hunseung Kang","doi":"10.1111/tpj.70637","DOIUrl":"https://doi.org/10.1111/tpj.70637","url":null,"abstract":"<div>\u0000 \u0000 <p>N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) modification occurs prevalently in eukaryotic mRNAs and is a key epitranscriptomic mechanism regulating plant development and stress responses. The m<sup>6</sup>A mark is interpreted by ‘readers’ that recognize and bind to m<sup>6</sup>A-modified RNAs. Recent studies highlight Evolutionarily Conserved C-terminal region (ECT) proteins as m<sup>6</sup>A readers in various plant species. However, the functions of many ECT proteins remain unknown. Therefore, this study aims to determine the role of ECT10 as an m<sup>6</sup>A reader and to evaluate its function in drought stress response in Arabidopsis. The electrophoretic mobility shift assay demonstrated that ECT10 specifically binds to m<sup>6</sup>A-modified RNAs but not to m<sup>5</sup>C-modified RNAs <i>in vitro</i>. The expression of <i>ECT10</i> decreased markedly under drought stress conditions. The <i>ect10</i> loss-of-function mutant exhibited reduced sensitivity to drought stress. Complementation lines expressing the native ECT10 in the <i>ect10</i> mutant background restored the wild-type phenotype, while lines expressing the mutant mECT10, harboring substitutions at two critical amino acid residues, failed to rescue the phenotype. ECT10 regulated the expression of several m<sup>6</sup>A-modified positive or negative regulators of the drought stress response by modulating their stability through direct binding to these m<sup>6</sup>A-modified transcripts <i>in planta</i>. Collectively, these findings establish ECT10 as a novel m<sup>6</sup>A reader crucial for drought stress response by modulating mRNA stability.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145695282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A TIR-NLR gene from Arabidopsis Pla-1 confers resistance to geminivirus infection 来自拟南芥Pla-1的TIR-NLR基因赋予对双病毒感染的抗性。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-12-06 DOI: 10.1111/tpj.70628
Wei Shen, Ruhel Rajrani, Maria Ines Reyes, Emily Wheeler, David Deppong, Leigh Mickelson-Young, Joseph Ndunguru, Linda Hanley-Bowdoin, José Trinidad Ascencio-Ibáñez

Geminiviruses are single-stranded DNA viruses that infect many plant species and cause serious losses in agronomically important crops. An earlier study showed that the Arabidopsis thaliana ecotype Pla-1 is resistant to infection by diverse geminivirus species and mapped the major resistance locus Geminivirus Resistance of Pla-1 1 (GRP1) to chromosome 1. In this study, we fine-mapped the GRP1 locus to a 0.6-Mb region and showed that its strength is gene-dosage-dependent. We also uncovered two minor resistance loci, GRP2 and GRP3, that mapped to chromosomes 3 and 5, respectively, and showed that GRP3 resistance is dependent on GRP1. RNA-Seq analysis of plants inoculated with the geminivirus, cabbage leaf curl virus (CaLCuV, Begomovirus brassicae), showed that AT1G31540, which is located in the GRP1 region and encodes a Toll/interleukin-1 receptor (TIR) type nucleotide-binding leucine-rich repeat receptor (NLR), is upregulated in Pla-1 compared to the susceptible Col-0. AT1G31540 specifies two TIR-NLR isoforms that contain non-synonymous codon differences between the two Arabidopsis ecotypes. Expression of the longer Pla-1 isoform, which includes a dual-segment leucine-rich repeat domain and an integrated domain at the C terminus, conferred CaLCuV resistance to Col-0, resulting in reduced viral DNA accumulation and no leaf chlorosis. In contrast, expression of the shorter isoform, which lacks the second leucine-rich repeat segment and the integrated domain, did not confer resistance. This study established that effector-triggered, TIR-NLR-mediated plant innate immunity contributes to geminivirus defense responses and identified a new host genetic resource to combat these important plant viral pathogens.

双链病毒是一种单链DNA病毒,可感染许多植物物种,并对重要的农艺作物造成严重损失。先前的研究表明,拟南芥生态型Pla-1对多种双病毒感染具有抗性,并将Pla-1 1 (GRP1)的主要抗性位点定位在1号染色体上。在本研究中,我们将GRP1位点精细定位到0.6 mb的区域,并发现其强度与基因剂量相关。我们还发现了两个较小的抗性位点,GRP2和GRP3,分别位于染色体3和5上,并表明GRP3的抗性依赖于GRP1。对接种双病毒甘蓝卷叶病毒(CaLCuV, begomvirus brassicae)的植株进行RNA-Seq分析发现,与易感的Col-0相比,位于GRP1区编码Toll/白细胞介素-1受体(TIR)型核苷酸结合富亮氨酸重复受体(NLR)的AT1G31540在pla1中的表达上调。AT1G31540指定了两种TIR-NLR亚型,它们包含两种拟南芥生态型之间的非同义密码子差异。较长的Pla-1异构体的表达,包括富含亮氨酸的双片段重复结构域和C端整合结构域,赋予CaLCuV对Col-0的抗性,导致病毒DNA积累减少和叶片不变色。相比之下,缺乏第二富含亮氨酸的重复片段和整合结构域的较短异构体的表达不会产生抗性。本研究证实了效应触发、tir - nlr介导的植物先天免疫有助于双病毒防御反应,并鉴定了一种新的宿主遗传资源来对抗这些重要的植物病毒病原体。
{"title":"A TIR-NLR gene from Arabidopsis Pla-1 confers resistance to geminivirus infection","authors":"Wei Shen,&nbsp;Ruhel Rajrani,&nbsp;Maria Ines Reyes,&nbsp;Emily Wheeler,&nbsp;David Deppong,&nbsp;Leigh Mickelson-Young,&nbsp;Joseph Ndunguru,&nbsp;Linda Hanley-Bowdoin,&nbsp;José Trinidad Ascencio-Ibáñez","doi":"10.1111/tpj.70628","DOIUrl":"10.1111/tpj.70628","url":null,"abstract":"<p>Geminiviruses are single-stranded DNA viruses that infect many plant species and cause serious losses in agronomically important crops. An earlier study showed that the <i>Arabidopsis thaliana</i> ecotype Pla-1 is resistant to infection by diverse geminivirus species and mapped the major resistance locus <i>Geminivirus Resistance of Pla-1 1</i> (<i>GRP1</i>) to chromosome 1. In this study, we fine-mapped the <i>GRP1</i> locus to a 0.6-Mb region and showed that its strength is gene-dosage-dependent. We also uncovered two minor resistance loci, <i>GRP2</i> and <i>GRP3</i>, that mapped to chromosomes 3 and 5, respectively, and showed that <i>GRP3</i> resistance is dependent on <i>GRP1</i>. RNA-Seq analysis of plants inoculated with the geminivirus, cabbage leaf curl virus (CaLCuV, <i>Begomovirus brassicae</i>), showed that <i>AT1G31540,</i> which is located in the <i>GRP1</i> region and encodes a Toll/interleukin-1 receptor (TIR) type nucleotide-binding leucine-rich repeat receptor (NLR), is upregulated in Pla-1 compared to the susceptible Col-0. <i>AT1G31540</i> specifies two TIR-NLR isoforms that contain non-synonymous codon differences between the two Arabidopsis ecotypes. Expression of the longer Pla-1 isoform, which includes a dual-segment leucine-rich repeat domain and an integrated domain at the C terminus, conferred CaLCuV resistance to Col-0, resulting in reduced viral DNA accumulation and no leaf chlorosis. In contrast, expression of the shorter isoform, which lacks the second leucine-rich repeat segment and the integrated domain, did not confer resistance. This study established that effector-triggered, TIR-NLR-mediated plant innate immunity contributes to geminivirus defense responses and identified a new host genetic resource to combat these important plant viral pathogens.</p>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"124 5","pages":""},"PeriodicalIF":5.7,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.70628","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145686565","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
The Plant Journal
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1