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PlantGENE: Advancing plant transformation through community engagement
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-02-05 DOI: 10.1111/tpj.17228
Aimee A. Malzahn, Heidi Kaeppler, William Gordon-Kamm, Keunsub Lee, Nigel Taylor, Veena Veena, Wayne Parrott, Joyce Van Eck

Plant transformation is an important part of plant research and crop improvement. Transformation methods remain complex, labor intensive, and inefficient. PlantGENE is a community of scientists from academia, industry, non-profit research institutes, and government organizations working to improve plant transformation. PlantGENE hosts virtual training, interactive webinars, and a website with career opportunities, directories, and more. The plant science community has shown great interest and support for PlantGENE.

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引用次数: 0
Boosting photosynthesis opens new opportunities for agriculture sustainability and circular economy: The BEST-CROP research and innovation action
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-02-05 DOI: 10.1111/tpj.17264
Paolo Pesaresi, Pierre Bono, Stephane Corn, Cristina Crosatti, Sara Daniotti, Jens Due Jensen, Ivo Frébort, Eder Groli, Claire Halpin, Mats Hansson, Goetz Hensel, David S. Horner, Kelly Houston, Ahmed Jahoor, Miloš Klíma, Hannes Kollist, Clément Lacoste, Boubker Laidoudi, Susanna Larocca, Caterina Marè, Nicolas Le Moigne, Chiara Mizzotti, Tomas Morosinotto, Klaus Oldach, Laura Rossini, Sebastian Raubach, Miguel Sanchez-Garcia, Paul D. Shaw, Rodolphe Sonnier, Alessandro Tondelli, Robbie Waugh, Andreas P.M. Weber, Dmitry Yarmolinsky, Alessandro Zeni, Luigi Cattivelli

There is a need for ground-breaking technologies to boost crop yield, both grains and biomass, and their processing into economically competitive materials. Novel cereals with enhanced photosynthesis and assimilation of greenhouse gasses, such as carbon dioxide and ozone, and tailored straw suitable for industrial manufacturing, open a new perspective for the circular economy. Here we describe the vision, strategies, and objectives of BEST-CROP, a Horizon-Europe and United Kingdom Research and Innovation (UKRI) funded project that relies on an alliance of academic plant scientists teaming up with plant breeding companies and straw processing companies to use the major advances in photosynthetic knowledge to improve barley biomass and to exploit the variability of barley straw quality and composition. We adopt the most promising strategies to improve the photosynthetic properties and ozone assimilation capacity of barley: (i) tuning leaf chlorophyll content and modifying canopy architecture; (ii) increasing the kinetics of photosynthetic responses to changes in irradiance; (iii) introducing photorespiration bypasses; (iv) modulating stomatal opening, thus increasing the rate of carbon dioxide fixation and ozone assimilation. We expect that by improving our targeted traits we will achieve increases in aboveground total biomass production without modification of the harvest index, with added benefits in sustainability via better resource-use efficiency of water and nitrogen. In parallel, the resulting barley straw is tailored to: (i) increase straw protein content to make it suitable for the development of alternative biolubricants and feed sources; (ii) control cellulose/lignin contents and lignin properties to develop straw-based construction panels and polymer composites. Overall, by exploiting natural- and induced-genetic variability as well as gene editing and transgenic engineering, BEST-CROP will lead to multi-purpose next generation barley cultivars supporting sustainable agriculture and capable of straw-based applications.

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引用次数: 0
Differentiation of genome-wide DNA methylation between japonica and indica rice
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-30 DOI: 10.1111/tpj.17218
Tao Yan, Liuhui Kuang, Fei Gao, Jian Chen, Lin Li, Dezhi Wu

Rice (Oryza sativa L.) subspecies japonica and indica show distinct morphological and genetic differentiation. However, the differences in the genome-wide DNA methylation and its effects on gene expression and metabolic levels between japonica and indica rice remain unclear. In this study, we investigated the genome-wide DNA methylation, transcriptomes and metabolomes of 12 representative japonica and indica rice accessions, to reveal the differentiation between rice subspecies. We detected 83 327 differentially methylated regions (DMRs) and 14 903 DMR-associated genes between two subspecies. Indica rice showed significantly lower levels of the CG, CHG, and CHH methylation compared with japonica rice. Subsequently, we identified 5596 differentially expressed genes between the two subspecies, predominantly enriched in pathways related to carbohydrate and amino acid metabolism. By integrating DNA methylation with transcriptomic data, a significant correlation was established between methylation patterns and the expression level of key agronomic genes in rice. Furthermore, multi-omics analyses reveal that carbohydrate metabolism pathways, especially the tricarboxylic acid (TCA) cycle metabolites, are remarkable differentiation between rice subspecies. These results provide a foundation for future studies in rice domestication and genetic improvement.

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引用次数: 0
Q&A with Dr. Adam Steinbrenner
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-30 DOI: 10.1111/tpj.70022
<p><i>Logline for carousel:</i> Dr. Steinbrenner shares his experiences in academia, and navigating biology in a family of non-academics. He shares his experiences as an assistant professor and gives insight into his research field on plant immunity.</p><p><i>Subtitle for latest feature list:</i> Adam Steinbrenner is an Associate Professor in the Department of Biology at the University of Washington, USA. He was recently appointed as part of The Plant Journal Editorial board.</p><p>@ADSteinbrenner</p><p>steinbrennerlab.org/</p><p>Dr. Steinbrenner is a passionate plant biologist whose journey into science is as fascinating as the questions he explores in his research. Growing up with a love for gardening and identifying trees, Dr. Steinbrenner discovered his calling through transformative research experiences in college, which introduced him to the molecular tools and ecological complexities of plant biology. Now leading his own lab, Dr. Steinbrenner focuses on pattern recognition receptors and how plants perceive and respond to diverse attackers like pathogens and herbivores. With a commitment to understanding the evolution of plant immune systems and addressing the challenges of receptor-ligand specificity, his work is advancing the frontiers of plant biology. Beyond the lab, Dr. Steinbrenner finds joy in discovery, mentoring the next generation of scientists, and balancing a fulfilling personal life with scientific pursuits.</p><p> </p><p>1. Can you tell us about you, your childhood, and your educational background? Anything that you're comfortable sharing.</p><p>As a kid, I loved gardening with my mom and identifying Pennsylvania trees. I did not know how it could become a career. Nobody in my family was in science or academia, so I remember being surprised and excited that there were research labs focused on questions in plant molecular biology.</p><p> </p><p>2. How did you become interested in plant biology?</p><p>I had two important research experiences in early college. At Tufts University I learned about plant specialized metabolism and ecological consequences working with Colin Orians. A summer NSF-REU internship at the Boyce Thompson Institute working with Greg Martin introduced me to model systems and molecular tools. It was 2007, the year after the famous zig-zag model of plant immunity was published – I remember discussing the model with Greg that summer. I was hooked.</p><p> </p><p>3. What are your current research interests?</p><p>My lab studies pattern recognition receptors (PRRs). We are interested in how these receptors perceive diverse attackers, especially chewing insect herbivores. We also want to know how signaling diverges coming from different PRRs, for example, PRRs that detect pathogens versus herbivores. We have built a model system based on plant perception of a caterpillar peptide (inceptin, also termed “In11”) mediated by a PRR called Inceptin
{"title":"Q&A with Dr. Adam Steinbrenner","authors":"","doi":"10.1111/tpj.70022","DOIUrl":"10.1111/tpj.70022","url":null,"abstract":"&lt;p&gt;&lt;i&gt;Logline for carousel:&lt;/i&gt; Dr. Steinbrenner shares his experiences in academia, and navigating biology in a family of non-academics. He shares his experiences as an assistant professor and gives insight into his research field on plant immunity.&lt;/p&gt;&lt;p&gt;&lt;i&gt;Subtitle for latest feature list:&lt;/i&gt; Adam Steinbrenner is an Associate Professor in the Department of Biology at the University of Washington, USA. He was recently appointed as part of The Plant Journal Editorial board.&lt;/p&gt;&lt;p&gt;@ADSteinbrenner&lt;/p&gt;&lt;p&gt;steinbrennerlab.org/&lt;/p&gt;&lt;p&gt;Dr. Steinbrenner is a passionate plant biologist whose journey into science is as fascinating as the questions he explores in his research. Growing up with a love for gardening and identifying trees, Dr. Steinbrenner discovered his calling through transformative research experiences in college, which introduced him to the molecular tools and ecological complexities of plant biology. Now leading his own lab, Dr. Steinbrenner focuses on pattern recognition receptors and how plants perceive and respond to diverse attackers like pathogens and herbivores. With a commitment to understanding the evolution of plant immune systems and addressing the challenges of receptor-ligand specificity, his work is advancing the frontiers of plant biology. Beyond the lab, Dr. Steinbrenner finds joy in discovery, mentoring the next generation of scientists, and balancing a fulfilling personal life with scientific pursuits.&lt;/p&gt;&lt;p&gt;\u0000 \u0000 &lt;/p&gt;&lt;p&gt;1. Can you tell us about you, your childhood, and your educational background? Anything that you're comfortable sharing.&lt;/p&gt;&lt;p&gt;As a kid, I loved gardening with my mom and identifying Pennsylvania trees. I did not know how it could become a career. Nobody in my family was in science or academia, so I remember being surprised and excited that there were research labs focused on questions in plant molecular biology.&lt;/p&gt;&lt;p&gt;\u0000 \u0000 &lt;/p&gt;&lt;p&gt;2. How did you become interested in plant biology?&lt;/p&gt;&lt;p&gt;I had two important research experiences in early college. At Tufts University I learned about plant specialized metabolism and ecological consequences working with Colin Orians. A summer NSF-REU internship at the Boyce Thompson Institute working with Greg Martin introduced me to model systems and molecular tools. It was 2007, the year after the famous zig-zag model of plant immunity was published – I remember discussing the model with Greg that summer. I was hooked.&lt;/p&gt;&lt;p&gt;\u0000 \u0000 &lt;/p&gt;&lt;p&gt;3. What are your current research interests?&lt;/p&gt;&lt;p&gt;My lab studies pattern recognition receptors (PRRs). We are interested in how these receptors perceive diverse attackers, especially chewing insect herbivores. We also want to know how signaling diverges coming from different PRRs, for example, PRRs that detect pathogens versus herbivores. We have built a model system based on plant perception of a caterpillar peptide (inceptin, also termed “In11”) mediated by a PRR called Inceptin","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"121 2","pages":""},"PeriodicalIF":6.2,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.70022","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143062664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Shaping up: miR319 and LANCEOLATE control tomato fruit morphology
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-30 DOI: 10.1111/tpj.70002
Martin Balcerowicz
<p>The domestication of tomato (<i>Solanum lycopersicum</i>) has given rise to a wide range of cultivars with distinct fruit shapes and sizes. These traits are not only relevant to consumer preferences, often indicating culinary applications, but also bear importance for mechanical harvesting. Thus, understanding the molecular basis of fruit formation is a priority for scientists and breeders alike. Yet, few genes have been identified that regulate tomato fruit morphology. Among these, the transcriptional repressor <i>OVATE</i> is one of the best characterised. Loss of <i>OVATE</i> function causes increased cell division along the proximal-distal axis and reduced cell proliferation along the medial-lateral axis, resulting in elongated, pear-shaped fruits (Snouffer et al., <span>2020</span>). How <i>OVATE</i> itself is regulated, however, is unclear.</p><p>Small RNAs, especially microRNAs (miRNAs) and phased secondary small interfering RNAs (phasiRNAs), are critical modulators of fruit development (Huang et al., <span>2022</span>). In the model plant <i>Arabidopsis thaliana</i>, miR319a affects the development of petals, stamen and siliques by targeting the mRNA encoding transcription factors TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) 3 and TCP4 (Cao et al., <span>2022</span>; Nag et al., <span>2009</span>). In tomato, miR160, miR166 and miR396 have been implicated in the regulation of fruit size and shape (Huang et al., <span>2022</span>). Tomato miR319 and its target SlTCP2/LANCEOLATE (LA), on the other hand, act as important regulators of leaf morphology (Ori et al., <span>2007</span>); their role in fruit formation had not been explored.</p><p>Fabio Nogueira developed a passion for miRNAs and their role in plant development during his postdoctoral studies with Marja Timmermans at Cold Spring Harbor Laboratory. After returning to Brazil to establish his own research group, he focused on the control of reproductive development, contrasting miRNA function in Arabidopsis with that in crops such as tomato. The highlighted study began as a Master's project of co-first author Airton Carvalho Jr, who investigated the links between tomato fruit shape, <i>LA</i> and miR319.</p><p>Carvalho et al. characterised <i>La-1</i> mutants, which harbour a mutation in <i>LA</i>'s miR319 recognition site, which results in LA de-repression and ectopic expression (Ori et al., <span>2007</span>). While homozygous mutants were rarely viable, heterozygous <i>La-1</i>/+ plants produced elongated fruits with a malformed septum, a rudimental placenta and, in some genetic backgrounds, a reduced number of seeds (Figure 1a). These phenotypes can be traced back to changes in the morphology of <i>La-1</i>/+ flowers, which have shorter sepals as well as carpels with a medial constriction in the ovary (Figure 1b). These phenotypes were associated with deregulated cell division in the developing flower and fruit: <i>La-1</i>/+ plants displayed an increased number of cell layers in the
{"title":"Shaping up: miR319 and LANCEOLATE control tomato fruit morphology","authors":"Martin Balcerowicz","doi":"10.1111/tpj.70002","DOIUrl":"10.1111/tpj.70002","url":null,"abstract":"&lt;p&gt;The domestication of tomato (&lt;i&gt;Solanum lycopersicum&lt;/i&gt;) has given rise to a wide range of cultivars with distinct fruit shapes and sizes. These traits are not only relevant to consumer preferences, often indicating culinary applications, but also bear importance for mechanical harvesting. Thus, understanding the molecular basis of fruit formation is a priority for scientists and breeders alike. Yet, few genes have been identified that regulate tomato fruit morphology. Among these, the transcriptional repressor &lt;i&gt;OVATE&lt;/i&gt; is one of the best characterised. Loss of &lt;i&gt;OVATE&lt;/i&gt; function causes increased cell division along the proximal-distal axis and reduced cell proliferation along the medial-lateral axis, resulting in elongated, pear-shaped fruits (Snouffer et al., &lt;span&gt;2020&lt;/span&gt;). How &lt;i&gt;OVATE&lt;/i&gt; itself is regulated, however, is unclear.&lt;/p&gt;&lt;p&gt;Small RNAs, especially microRNAs (miRNAs) and phased secondary small interfering RNAs (phasiRNAs), are critical modulators of fruit development (Huang et al., &lt;span&gt;2022&lt;/span&gt;). In the model plant &lt;i&gt;Arabidopsis thaliana&lt;/i&gt;, miR319a affects the development of petals, stamen and siliques by targeting the mRNA encoding transcription factors TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) 3 and TCP4 (Cao et al., &lt;span&gt;2022&lt;/span&gt;; Nag et al., &lt;span&gt;2009&lt;/span&gt;). In tomato, miR160, miR166 and miR396 have been implicated in the regulation of fruit size and shape (Huang et al., &lt;span&gt;2022&lt;/span&gt;). Tomato miR319 and its target SlTCP2/LANCEOLATE (LA), on the other hand, act as important regulators of leaf morphology (Ori et al., &lt;span&gt;2007&lt;/span&gt;); their role in fruit formation had not been explored.&lt;/p&gt;&lt;p&gt;Fabio Nogueira developed a passion for miRNAs and their role in plant development during his postdoctoral studies with Marja Timmermans at Cold Spring Harbor Laboratory. After returning to Brazil to establish his own research group, he focused on the control of reproductive development, contrasting miRNA function in Arabidopsis with that in crops such as tomato. The highlighted study began as a Master's project of co-first author Airton Carvalho Jr, who investigated the links between tomato fruit shape, &lt;i&gt;LA&lt;/i&gt; and miR319.&lt;/p&gt;&lt;p&gt;Carvalho et al. characterised &lt;i&gt;La-1&lt;/i&gt; mutants, which harbour a mutation in &lt;i&gt;LA&lt;/i&gt;'s miR319 recognition site, which results in LA de-repression and ectopic expression (Ori et al., &lt;span&gt;2007&lt;/span&gt;). While homozygous mutants were rarely viable, heterozygous &lt;i&gt;La-1&lt;/i&gt;/+ plants produced elongated fruits with a malformed septum, a rudimental placenta and, in some genetic backgrounds, a reduced number of seeds (Figure 1a). These phenotypes can be traced back to changes in the morphology of &lt;i&gt;La-1&lt;/i&gt;/+ flowers, which have shorter sepals as well as carpels with a medial constriction in the ovary (Figure 1b). These phenotypes were associated with deregulated cell division in the developing flower and fruit: &lt;i&gt;La-1&lt;/i&gt;/+ plants displayed an increased number of cell layers in the","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"121 2","pages":""},"PeriodicalIF":6.2,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.70002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143062669","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ZmDREB1A controls plant immunity via regulating salicylic acid metabolism in maize
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-28 DOI: 10.1111/tpj.17226
Chunxia Zhang, Huanbo Zhang, Wanping Lin, Jiahao Chai, Xiaoqing Shangguan, Tianyong Zhao

DREB1A, a pivotal transcription factor, has long been known to regulate plant abiotic stress tolerance. However, its role in plant biotic stress tolerance and the underlying mechanisms have remained a mystery. Our research reveals that the maize ZmDREB1A gene is up-regulated in maize seedlings when the plants are infected by Rhizoctonia solani (R. solani). The maize ZmDREB1A knock-out mutant exhibits increased disease resistance against the pathogen R. solani. Further investigation showed that ZmDREB1A regulates salicylic acid (SA) metabolism by inhibiting ZmSARD1 gene and activating ZmSAGT gene expression. Additionally, the SA level was increased while the SAG level was decreased in zmdreb1a mutant seedlings when the plants were infected with the pathogen R. solani. Furthermore, overexpression of ZmSAGT in Arabidopsis reduced plant resistance to Pst DC3000 by decreasing SA levels and increasing SAG levels. These data demonstrate that ZmDREB1A regulates the metabolism of SA and controls plant immune response in maize.

{"title":"ZmDREB1A controls plant immunity via regulating salicylic acid metabolism in maize","authors":"Chunxia Zhang,&nbsp;Huanbo Zhang,&nbsp;Wanping Lin,&nbsp;Jiahao Chai,&nbsp;Xiaoqing Shangguan,&nbsp;Tianyong Zhao","doi":"10.1111/tpj.17226","DOIUrl":"10.1111/tpj.17226","url":null,"abstract":"<div>\u0000 \u0000 <p>DREB1A, a pivotal transcription factor, has long been known to regulate plant abiotic stress tolerance. However, its role in plant biotic stress tolerance and the underlying mechanisms have remained a mystery. Our research reveals that the maize <i>ZmDREB1A</i> gene is up-regulated in maize seedlings when the plants are infected by <i>Rhizoctonia solani</i> (<i>R. solani</i>). The maize <i>ZmDREB1A</i> knock-out mutant exhibits increased disease resistance against the pathogen <i>R. solani</i>. Further investigation showed that ZmDREB1A regulates salicylic acid (SA) metabolism by inhibiting <i>ZmSARD1</i> gene and activating <i>ZmSAGT</i> gene expression. Additionally, the SA level was increased while the SAG level was decreased in <i>zmdreb1a</i> mutant seedlings when the plants were infected with the pathogen <i>R. solani</i>. Furthermore, overexpression of <i>ZmSAGT</i> in <i>Arabidopsis</i> reduced plant resistance to <i>Pst</i> DC3000 by decreasing SA levels and increasing SAG levels. These data demonstrate that ZmDREB1A regulates the metabolism of SA and controls plant immune response in maize.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"121 2","pages":""},"PeriodicalIF":6.2,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143051091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Understanding the electron pathway fluidity of Synechocystis in biophotovoltaics 了解生物光电中 Synechocystis 的电子通路流动性。
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-27 DOI: 10.1111/tpj.17225
Hans Schneider, Bin Lai, Jens O. Krömer

Biophotovoltaics offers a promising low-carbon footprint approach to utilize solar energy. It aims to couple natural oxygenic photosynthetic electrons to an external electron sink. This lays the foundation for a potentially high light-to-energy efficiency of the Biophotovoltaic process. However, there are still uncertainties around demonstrating the direct coupling of electron fluxes between photosystems and the external electrode. The dynamic cellular electron transfer network linked to physiological and environmental parameters poses a particular challenge here. In this work, the active cellular electron transfer network was modulated by tuning the cultivating conditions of Synechocystis and the operating conditions in Biophotovoltaics. The current output during darkness was found to be determined by the intracellular glycogen levels. Minimizing the intracellular glycogen pools also eliminated the dark-current output. Moreover, our results provide strong evidence that water splitting in photosystem II is the electron source enabling photocurrent, bypassing the microbe's metabolism. Eliminating the storage carbon as possible source of electrons did not reduce the specific photocurrent output, indicating an efficient coupling of photosynthetic electron flux to the anode. Furthermore, inhibiting respiration on the one hand increased the photocurrent and on the other hand showed a negative effect on the dark-current output. This suggested a switchable role of the respiratory electron transfer chain in the extracellular electron transfer pathway. Overall, we conclude that Synechocystis dynamically switches electron sources and utilizes different extracellular transfer pathways for the current output toward the external electron sink, depending on the physiological and environmental conditions.

{"title":"Understanding the electron pathway fluidity of Synechocystis in biophotovoltaics","authors":"Hans Schneider,&nbsp;Bin Lai,&nbsp;Jens O. Krömer","doi":"10.1111/tpj.17225","DOIUrl":"10.1111/tpj.17225","url":null,"abstract":"<p>Biophotovoltaics offers a promising low-carbon footprint approach to utilize solar energy. It aims to couple natural oxygenic photosynthetic electrons to an external electron sink. This lays the foundation for a potentially high light-to-energy efficiency of the Biophotovoltaic process. However, there are still uncertainties around demonstrating the direct coupling of electron fluxes between photosystems and the external electrode. The dynamic cellular electron transfer network linked to physiological and environmental parameters poses a particular challenge here. In this work, the active cellular electron transfer network was modulated by tuning the cultivating conditions of <i>Synechocystis</i> and the operating conditions in Biophotovoltaics. The current output during darkness was found to be determined by the intracellular glycogen levels. Minimizing the intracellular glycogen pools also eliminated the dark-current output. Moreover, our results provide strong evidence that water splitting in photosystem II is the electron source enabling photocurrent, bypassing the microbe's metabolism. Eliminating the storage carbon as possible source of electrons did not reduce the specific photocurrent output, indicating an efficient coupling of photosynthetic electron flux to the anode. Furthermore, inhibiting respiration on the one hand increased the photocurrent and on the other hand showed a negative effect on the dark-current output. This suggested a switchable role of the respiratory electron transfer chain in the extracellular electron transfer pathway. Overall, we conclude that <i>Synechocystis</i> dynamically switches electron sources and utilizes different extracellular transfer pathways for the current output toward the external electron sink, depending on the physiological and environmental conditions.</p>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"121 2","pages":""},"PeriodicalIF":6.2,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11771661/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143045238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of glutathione reductase on photosystem II characterization and reactive oxygen species metabolism in cotton cytoplasmic male sterile line Jin A
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-27 DOI: 10.1111/tpj.17217
Li Zhang, Panpan Jing, Biao Geng, Jinjiang Shi, Jinlong Zhang, Dong Liang, Yujie Yang, Yunfang Qu, Jinling Huang

Glutathione reductase (GR) maintains the cellular redox state by reducing oxidized glutathione to glutathione (GSH), which regulates antioxidant defense. Additionally, GR plays an essential role in photosynthesis; however, the mechanism by which GR regulates photosystem II (PSII) is largely unknown. We identified six, three, and three GR genes in Gossypium hirsutum, Gossypium arboreum, and Gossypium raimondii, respectively. We found that GhGR1 and GhGR3 proteins were localized in the chloroplasts, whereas GhGR5 was localized in the cell membrane. Cytoplasmic male sterile (CMS) line Jin A was ideal to explore GR functions because accumulation of reactive oxygen species (ROS) was increased and expression of GhGR was downregulated at the key stage of microspore abortion in anthers compared to maintainer Jin B. The GR activity and relative GhGR1, GhGR3, GhGR5 gene expressions decreased significantly at the key stage of microspore abortion in Jin A-CMS compared to that in Jin B, resulting in an increase in ROS and a decrease in photochemical efficiency in PSII. GhGR1 and GhGR3 overexpression in Arabidopsis decreased ROS levels in anthers and leaves compared to the wild-type. Biochemical analysis of GhGR1 and GhGR3 silencing in Gossypium L. showed that ROS content was increased and photochemical efficiency of PSII was inhibited in leaves. Complementation experiments in tobacco and yeast indicated that GhGR1 interacted with GhPsbX, which was one of the subunits of the PSII protein complex. Taken together, these findings suggest that chloroplast GR plays an important role in PSII and ROS metabolism by interacting with PsbX in cotton plants.

{"title":"Effect of glutathione reductase on photosystem II characterization and reactive oxygen species metabolism in cotton cytoplasmic male sterile line Jin A","authors":"Li Zhang,&nbsp;Panpan Jing,&nbsp;Biao Geng,&nbsp;Jinjiang Shi,&nbsp;Jinlong Zhang,&nbsp;Dong Liang,&nbsp;Yujie Yang,&nbsp;Yunfang Qu,&nbsp;Jinling Huang","doi":"10.1111/tpj.17217","DOIUrl":"10.1111/tpj.17217","url":null,"abstract":"<div>\u0000 \u0000 <p>Glutathione reductase (GR) maintains the cellular redox state by reducing oxidized glutathione to glutathione (GSH), which regulates antioxidant defense. Additionally, GR plays an essential role in photosynthesis; however, the mechanism by which GR regulates photosystem II (PSII) is largely unknown. We identified six, three, and three <i>GR</i> genes in <i>Gossypium hirsutum</i>, <i>Gossypium arboreum</i>, and <i>Gossypium raimondii</i>, respectively. We found that GhGR1 and GhGR3 proteins were localized in the chloroplasts, whereas GhGR5 was localized in the cell membrane. Cytoplasmic male sterile (CMS) line Jin A was ideal to explore GR functions because accumulation of reactive oxygen species (ROS) was increased and expression of GhGR was downregulated at the key stage of microspore abortion in anthers compared to maintainer Jin B. The GR activity and relative <i>GhGR1</i>, <i>GhGR3</i>, <i>GhGR5</i> gene expressions decreased significantly at the key stage of microspore abortion in Jin A-CMS compared to that in Jin B, resulting in an increase in ROS and a decrease in photochemical efficiency in PSII. <i>GhGR1</i> and <i>GhGR3</i> overexpression in Arabidopsis decreased ROS levels in anthers and leaves compared to the wild-type. Biochemical analysis of <i>GhGR1</i> and <i>GhGR3</i> silencing in <i>Gossypium</i> L. showed that ROS content was increased and photochemical efficiency of PSII was inhibited in leaves. Complementation experiments in tobacco and yeast indicated that GhGR1 interacted with GhPsbX, which was one of the subunits of the PSII protein complex. Taken together, these findings suggest that chloroplast GR plays an important role in PSII and ROS metabolism by interacting with PsbX in cotton plants.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"121 2","pages":""},"PeriodicalIF":6.2,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143045225","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phosphorus starvation induces the synthesis of novel lipid class diacylglyceryl glucuronide and diacylglyceryl-N,N,N-trimethylhomoserine in two species of cold-adapted microalgae Raphidonema (Chlorophyta)
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-27 DOI: 10.1111/tpj.17227
Hirono Suzuki, Stéphan Cuiné, Bertrand Légeret, René H. Wijffels, Chris J. Hulatt, Yonghua Li-Beisson, Viswanath Kiron

Microalgae possess diverse lipid classes as components of structural membranes and have adopted various lipid remodeling strategies involving phospholipids to cope with a phosphorus (P)-limited environment. Here, we report a unique adaptative strategy to P deficient conditions in two cold-adapted microalgae, Raphidonema monicae and Raphidonema nivale, involving the lipid class diacylglyceryl glucuronide (DGGA) and the betaine lipid diacylglyceryl-N,N,N-trimethylhomoserine. Lipidomic analyses showed that these two lipid classes were present only in trace amounts in nutrient replete conditions, whereas they significantly increased under P-starvation concomitant with a reduction in phospholipids, suggesting a physiological significance of these lipid classes to combat P-starvation. Additionally, we found two putative sulfoquinovosyldiacylglycerol (SQDG) synthases, known to be involved in DGGA synthesis in higher plants, in the draft genome of R. monicae, and compared it with SQDG synthases found in other organisms such as higher plants, Streptophyta, and Chlorophyta. DGGA has not been previously recognized in Chlorophyta, and our findings suggest that the lipid class may be present in other closely related green algae too. Thus, this study expands our knowledge on diverse lipid remodeling responses of Chlorophycean algae to adapt to low P environments.

{"title":"Phosphorus starvation induces the synthesis of novel lipid class diacylglyceryl glucuronide and diacylglyceryl-N,N,N-trimethylhomoserine in two species of cold-adapted microalgae Raphidonema (Chlorophyta)","authors":"Hirono Suzuki,&nbsp;Stéphan Cuiné,&nbsp;Bertrand Légeret,&nbsp;René H. Wijffels,&nbsp;Chris J. Hulatt,&nbsp;Yonghua Li-Beisson,&nbsp;Viswanath Kiron","doi":"10.1111/tpj.17227","DOIUrl":"10.1111/tpj.17227","url":null,"abstract":"<p>Microalgae possess diverse lipid classes as components of structural membranes and have adopted various lipid remodeling strategies involving phospholipids to cope with a phosphorus (P)-limited environment. Here, we report a unique adaptative strategy to P deficient conditions in two cold-adapted microalgae, <i>Raphidonema monicae</i> and <i>Raphidonema nivale,</i> involving the lipid class diacylglyceryl glucuronide (DGGA) and the betaine lipid diacylglyceryl-<i>N,N,N</i>-trimethylhomoserine. Lipidomic analyses showed that these two lipid classes were present only in trace amounts in nutrient replete conditions, whereas they significantly increased under P-starvation concomitant with a reduction in phospholipids, suggesting a physiological significance of these lipid classes to combat P-starvation. Additionally, we found two putative sulfoquinovosyldiacylglycerol (SQDG) synthases, known to be involved in DGGA synthesis in higher plants, in the draft genome of <i>R. monicae</i>, and compared it with SQDG synthases found in other organisms such as higher plants, Streptophyta, and Chlorophyta. DGGA has not been previously recognized in Chlorophyta, and our findings suggest that the lipid class may be present in other closely related green algae too. Thus, this study expands our knowledge on diverse lipid remodeling responses of Chlorophycean algae to adapt to low P environments.</p>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"121 2","pages":""},"PeriodicalIF":6.2,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11771548/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143057613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dimerization among multiple NAC proteins mediates secondary cell wall cellulose biosynthesis in cotton fibers
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-01-27 DOI: 10.1111/tpj.17223
Feng Chen, Mengfei Qiao, Li Chen, Min Liu, Jingwen Luo, Yanan Gao, Mengyun Li, Jinglong Cai, Staffan Persson, Gengqing Huang, Wenliang Xu

Cotton fibers, essentially cellulosic secondary cell walls (SCWs) when mature, are the most important raw material for natural textiles. SCW cellulose biosynthesis determines fiber thickness and industrially important fiber quality parameters, such as fiber strength and fiber length. However, transcriptional regulatory networks controlling fiber SCW cellulose formation remain incomplete. Here, we identify eight NAC domain proteins (GhNACs) that are involved in fiber SCW cellulose synthesis. These eight GhNACs can form pairwise heterodimers that may act as dimers, or perhaps even as an octameric protein complex, to transactivate GhCesA expression. Moreover, heterodimerization of GhNACs can in different combinations synergistically activate GhCesA genes. Through our analyses of transcription factor—DNA and transcription factor—transcription factor interactions, we propose a multi-layered transcriptional regulatory network in which the regulation of SCW cellulose biosynthesis in cotton fiber is mediated by multiple NAC protein dimers. These findings enhance our understanding of the roles of NAC proteins in SCW formation and offer new insights into fiber-specific transcriptional regulatory mechanisms of cellulose synthesis.

{"title":"Dimerization among multiple NAC proteins mediates secondary cell wall cellulose biosynthesis in cotton fibers","authors":"Feng Chen,&nbsp;Mengfei Qiao,&nbsp;Li Chen,&nbsp;Min Liu,&nbsp;Jingwen Luo,&nbsp;Yanan Gao,&nbsp;Mengyun Li,&nbsp;Jinglong Cai,&nbsp;Staffan Persson,&nbsp;Gengqing Huang,&nbsp;Wenliang Xu","doi":"10.1111/tpj.17223","DOIUrl":"https://doi.org/10.1111/tpj.17223","url":null,"abstract":"<div>\u0000 \u0000 <p>Cotton fibers, essentially cellulosic secondary cell walls (SCWs) when mature, are the most important raw material for natural textiles. SCW cellulose biosynthesis determines fiber thickness and industrially important fiber quality parameters, such as fiber strength and fiber length. However, transcriptional regulatory networks controlling fiber SCW cellulose formation remain incomplete. Here, we identify eight NAC domain proteins (GhNACs) that are involved in fiber SCW cellulose synthesis. These eight GhNACs can form pairwise heterodimers that may act as dimers, or perhaps even as an octameric protein complex, to transactivate <i>GhCesA</i> expression. Moreover, heterodimerization of GhNACs can in different combinations synergistically activate <i>GhCesA</i> genes. Through our analyses of transcription factor—DNA and transcription factor—transcription factor interactions, we propose a multi-layered transcriptional regulatory network in which the regulation of SCW cellulose biosynthesis in cotton fiber is mediated by multiple NAC protein dimers. These findings enhance our understanding of the roles of NAC proteins in SCW formation and offer new insights into fiber-specific transcriptional regulatory mechanisms of cellulose synthesis.</p>\u0000 </div>","PeriodicalId":233,"journal":{"name":"The Plant Journal","volume":"121 2","pages":""},"PeriodicalIF":6.2,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143119877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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The Plant Journal
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