首页 > 最新文献

Biosensors and Bioelectronics: X最新文献

英文 中文
Multichannel multimodal piezoelectric middle ear implant concept based on MEMS technology for next-generation fully implantable cochlear implant applications 基于 MEMS 技术的多通道多模式压电中耳植入概念,适用于下一代完全植入式人工耳蜗应用
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-23 DOI: 10.1016/j.biosx.2024.100471
Feyza Pirim , Ali Can Atik , Muhammed Berat Yüksel , Akın Mert Yılmaz , Mehmet Birol Uğur , Selçuk Tunalı , Aykan Batu , Mahmut Kamil Aslan , Mehmet Bülent Özer , Haluk Külah

This paper introduces a unique multimode, multichannel piezoelectric vibration sensor for the next-generation fully implantable cochlear implant (FICI) systems. The sensor, which can be implanted on the middle ear chain to collect and filter the ambient sound in eight frequency bands, comprises an array of 4 M-shape multimode and 11 single cantilevers. Finite element (FE) analysis indicates a 2.05-fold improvement in capturing frequency information for the multimodal sensor compared to its single-mode counterpart. Under an acoustic excitation at 100 dB SPL, the sensor, mounted on an artificial tympanic membrane, yielded a peak output voltage of 546.16 mVpp and a peak sensitivity of 285.28 mVpp/Pa at 1613 Hz. The extrapolated acoustic results indicated a dynamic frequency range between 300 Hz and 6 kHz, even at 30 dB SPL. Furthermore, a lightweight titanium coupler, employing a two-sided clipping structure with a maximum wall thickness of 70 μm, is micromachined for surgical attachment of the transducer to the middle ear chain. A commercial accelerometer, implanted on the incus short process (SP) of a cadaver using the titanium coupler, successfully recorded 0.1 g for 100 dB SPL at 500 Hz, revealing the potential feasibility of the coupler for vibration sensor implantation. Moreover, the presented anatomically accurate FE model of the middle ear, exhibiting a high correlation coefficient (R2) of 0.97 with the cadaveric experiment, suggests an efficient numerical approach for evaluating the implantation of middle ear prostheses. In this regard, the study holds great promise for clinical application in the field of implantable hearing aids.

本文介绍了一种独特的多模多通道压电振动传感器,适用于下一代完全植入式人工耳蜗(FICI)系统。该传感器由 4 个 M 型多模和 11 个单悬臂阵列组成,可植入中耳链,收集和过滤 8 个频段的环境声。有限元(FE)分析表明,与单模传感器相比,多模传感器在捕捉频率信息方面提高了 2.05 倍。在 100 dB SPL 的声激励下,安装在人工鼓膜上的传感器在 1613 Hz 时的输出电压峰值为 546.16 mVpp,灵敏度峰值为 285.28 mVpp/Pa。推断的声学结果表明,即使在 30 dB SPL 时,动态频率范围也在 300 Hz 至 6 kHz 之间。此外,还对轻型钛耦合器进行了微机械加工,该耦合器采用了最大壁厚为 70 μm 的双面剪切结构,可通过手术将换能器固定到中耳链上。使用钛耦合器将一个商用加速度计植入一具尸体的门骨短突(SP)上,成功记录了 500 Hz 100 dB SPL 下 0.1 g 的加速度,揭示了耦合器植入振动传感器的潜在可行性。此外,所提出的中耳解剖学精确有限元模型与尸体实验的相关系数(R2)高达 0.97,表明这是一种评估中耳假体植入的有效数值方法。在这方面,该研究为植入式助听器领域的临床应用带来了巨大希望。
{"title":"Multichannel multimodal piezoelectric middle ear implant concept based on MEMS technology for next-generation fully implantable cochlear implant applications","authors":"Feyza Pirim ,&nbsp;Ali Can Atik ,&nbsp;Muhammed Berat Yüksel ,&nbsp;Akın Mert Yılmaz ,&nbsp;Mehmet Birol Uğur ,&nbsp;Selçuk Tunalı ,&nbsp;Aykan Batu ,&nbsp;Mahmut Kamil Aslan ,&nbsp;Mehmet Bülent Özer ,&nbsp;Haluk Külah","doi":"10.1016/j.biosx.2024.100471","DOIUrl":"10.1016/j.biosx.2024.100471","url":null,"abstract":"<div><p>This paper introduces a unique multimode, multichannel piezoelectric vibration sensor for the next-generation fully implantable cochlear implant (FICI) systems. The sensor, which can be implanted on the middle ear chain to collect and filter the ambient sound in eight frequency bands, comprises an array of 4 M-shape multimode and 11 single cantilevers. Finite element (FE) analysis indicates a 2.05-fold improvement in capturing frequency information for the multimodal sensor compared to its single-mode counterpart. Under an acoustic excitation at 100 dB SPL, the sensor, mounted on an artificial tympanic membrane, yielded a peak output voltage of 546.16 mVpp and a peak sensitivity of 285.28 mVpp/Pa at 1613 Hz. The extrapolated acoustic results indicated a dynamic frequency range between 300 Hz and 6 kHz, even at 30 dB SPL. Furthermore, a lightweight titanium coupler, employing a two-sided clipping structure with a maximum wall thickness of 70 μm, is micromachined for surgical attachment of the transducer to the middle ear chain. A commercial accelerometer, implanted on the incus short process (SP) of a cadaver using the titanium coupler, successfully recorded 0.1 g for 100 dB SPL at 500 Hz, revealing the potential feasibility of the coupler for vibration sensor implantation. Moreover, the presented anatomically accurate FE model of the middle ear, exhibiting a high correlation coefficient (R<sup>2</sup>) of 0.97 with the cadaveric experiment, suggests an efficient numerical approach for evaluating the implantation of middle ear prostheses. In this regard, the study holds great promise for clinical application in the field of implantable hearing aids.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"18 ","pages":"Article 100471"},"PeriodicalIF":10.61,"publicationDate":"2024-03-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000359/pdfft?md5=30dec774d958466a1c409898c79ce00e&pid=1-s2.0-S2590137024000359-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140282030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ultrasensitive prostate cancer marker PCA3 detection with impedimetric biosensor based on specific label-free aptamers 利用基于特异性无标记适配体的阻抗生物传感器检测超灵敏前列腺癌标记物 PCA3
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-16 DOI: 10.1016/j.biosx.2024.100462
Sarra Takita , Alexi Nabok , Magdi Mussa , Matthew Kitchen , Anna Lishchuk , David Smith

Prostate cancer (PCa) appears among the most frequently diagnosed types of malignancies in males. Because of the high demand and increasing detection rate of early PCa, alongside the specificity limitations of the gold standard clinical tools available for the diagnosis and prognosis of prostate cancer, there is an urgent need for more reliable PCa markers and highly sensitive diagnostic tools to avoid under-treatment and over-diagnosis. PCA3, or prostate cancer antigen 3, is a potential prostate cancer biomarker that is more specific and useful for preventing unnecessary repeat biopsies, particularly in men with persistently high prostate-specific antigen indices after a negative biopsy. Additionally, an electrochemically based biosensor would prove to be a powerful diagnostic tool for PCA3 detection in urine because of its simplicity, sensitivity, and cost-effectiveness, in contrast to the more traditional PCa diagnostics that depend on blood testing. This paper aimed to design a novel and simple electrochemical impedimetric biosensor based on a label-free RNA-aptamer (CG3-PCA3) as the molecular recognition element for detecting PCA3. The proposed aptasensor for the detection of PCA3 has been developed using a screen-printed carbon electrode (SPCE) modified by gold nanoparticles (AuNPs), further improving sensitivity and allowing the immobilisation of thiolate aptamers on its surface. The findings presented here demonstrated a high sensitivity to PCA3, with a detection limit of 20 fM in artificial urine and 1 fM in buffer. These results indicate that the PCA3 aptasensor could be a promising tool for routine PCa diagnosis due to its high sensitivity and cost-effectiveness.

前列腺癌(PCa)是男性最常见的恶性肿瘤之一。由于对早期 PCa 的需求量大且检出率不断上升,同时用于前列腺癌诊断和预后的金标准临床工具存在特异性限制,因此迫切需要更可靠的 PCa 标志物和高灵敏度的诊断工具,以避免治疗不足和过度诊断。PCA3(前列腺癌抗原 3)是一种潜在的前列腺癌生物标记物,具有更高的特异性,有助于防止不必要的重复活检,特别是在活检阴性后前列腺特异性抗原指数持续偏高的男性中。此外,与依赖血液检测的传统 PCa 诊断方法相比,基于电化学的生物传感器因其简便、灵敏和成本效益高,将被证明是检测尿液中 PCA3 的强大诊断工具。本文旨在设计一种基于无标记 RNA-适配体(CG3-PCA3)的新型、简单的电化学阻抗生物传感器,作为检测 PCA3 的分子识别元件。所提出的用于检测 PCA3 的适配体传感器是利用经金纳米粒子(AuNPs)修饰的丝网印刷碳电极(SPCE)开发的,从而进一步提高了灵敏度,并可在其表面固定硫代硫酸盐适配体。本文的研究结果表明,PCA3 具有很高的灵敏度,在人工尿液中的检测限为 20 fM,在缓冲液中的检测限为 1 fM。这些结果表明,PCA3 灵敏度高、成本效益好,有望成为 PCa 常规诊断的一种工具。
{"title":"Ultrasensitive prostate cancer marker PCA3 detection with impedimetric biosensor based on specific label-free aptamers","authors":"Sarra Takita ,&nbsp;Alexi Nabok ,&nbsp;Magdi Mussa ,&nbsp;Matthew Kitchen ,&nbsp;Anna Lishchuk ,&nbsp;David Smith","doi":"10.1016/j.biosx.2024.100462","DOIUrl":"https://doi.org/10.1016/j.biosx.2024.100462","url":null,"abstract":"<div><p>Prostate cancer (PCa) appears among the most frequently diagnosed types of malignancies in males. Because of the high demand and increasing detection rate of early PCa, alongside the specificity limitations of the gold standard clinical tools available for the diagnosis and prognosis of prostate cancer, there is an urgent need for more reliable PCa markers and highly sensitive diagnostic tools to avoid under-treatment and over-diagnosis. PCA3, or prostate cancer antigen 3, is a potential prostate cancer biomarker that is more specific and useful for preventing unnecessary repeat biopsies, particularly in men with persistently high prostate-specific antigen indices after a negative biopsy. Additionally, an electrochemically based biosensor would prove to be a powerful diagnostic tool for PCA3 detection in urine because of its simplicity, sensitivity, and cost-effectiveness, in contrast to the more traditional PCa diagnostics that depend on blood testing. This paper aimed to design a novel and simple electrochemical impedimetric biosensor based on a label-free RNA-aptamer (CG3-PCA3) as the molecular recognition element for detecting PCA3. The proposed aptasensor for the detection of PCA3 has been developed using a screen-printed carbon electrode (SPCE) modified by gold nanoparticles (AuNPs), further improving sensitivity and allowing the immobilisation of thiolate aptamers on its surface. The findings presented here demonstrated a high sensitivity to PCA3, with a detection limit of 20 fM in artificial urine and 1 fM in buffer. These results indicate that the PCA3 aptasensor could be a promising tool for routine PCa diagnosis due to its high sensitivity and cost-effectiveness.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"18 ","pages":"Article 100462"},"PeriodicalIF":10.61,"publicationDate":"2024-03-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000268/pdfft?md5=e319b16be9c87b15bf63c859be5df388&pid=1-s2.0-S2590137024000268-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140163555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Selective visual detection of multiplex PCR amplicon using magnetic microbeads 利用磁性微珠对多重 PCR 扩增子进行选择性视觉检测
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-14 DOI: 10.1016/j.biosx.2024.100461
Michihiko Nakano, Masafumi Inaba, Junya Suehiro

Nucleic acid amplification tests (NATs), such as genetic tests using polymerase chain reaction (PCR), are sensitive methods for detecting pathogens and food contamination. The rapid, easy, and inexpensive detection of amplicons, DNA, or RNA is key to realizing on-site NATs. We have previously developed a novel amplicon detection method using magnetic microbeads based on the hydrophobicity of DNA in deionized water. In this study, we aimed to expand the method for the detection of multiplex DNA amplicons. Tagged primers and probes for selective attachment were used to detect amplicons from two strawberry pathogens. The amplicon-labeled magnetic microbeads were placed in the round-bottom well of a hydrophilic glass substrate. The attachment of amplicons to the magnetic microbeads changed their surface from hydrophilic to hydrophobic. The magnetized microbeads concentrated at the bottom when the substrate was placed on a permanent magnet, and the concentrated microbeads were easily recognizable by the naked eye. Microbeads without amplicons were adsorbed over a broad area of the bottom of the glass well owing to their hydrophilicity. The appropriate tag probe was attached to specific amplicons for detection, and each amplicon from multiplex PCR was selectively detected within approximately 15 min. Notably, this method requires no electric power and contributes to the realization of on-site NAT detection. This study presents a simple and rapid method for the selective detection of multiplex PCR amplicons using DNA–DNA hybridization.

核酸扩增检测(NAT),如使用聚合酶链反应(PCR)进行的基因检测,是检测病原体和食品污染的灵敏方法。快速、简便、廉价地检测扩增子、DNA 或 RNA 是实现现场 NAT 的关键。此前,我们根据去离子水中 DNA 的疏水性,利用磁性微珠开发了一种新型扩增子检测方法。在这项研究中,我们的目标是将这种方法扩展到多重 DNA 扩增子的检测。我们使用了用于选择性附着的标记引物和探针来检测两种草莓病原体的扩增子。将标记了扩增子的磁性微珠置于亲水性玻璃基底的圆底孔中。扩增子附着在磁性微珠上后,其表面由亲水性变为疏水性。当把基底放在永久磁铁上时,磁化的微珠集中在底部,肉眼很容易辨认出集中的微珠。由于亲水性,不含扩增子的微珠被吸附在玻璃井底部的广大区域。将适当的标签探针连接到特定的扩增子上进行检测,在大约 15 分钟内就能选择性地检测到多重 PCR 中的每个扩增子。值得注意的是,这种方法无需电力,有助于实现现场 NAT 检测。本研究提出了一种利用 DNA-DNA 杂交对多重 PCR 扩增子进行选择性检测的简单而快速的方法。
{"title":"Selective visual detection of multiplex PCR amplicon using magnetic microbeads","authors":"Michihiko Nakano,&nbsp;Masafumi Inaba,&nbsp;Junya Suehiro","doi":"10.1016/j.biosx.2024.100461","DOIUrl":"https://doi.org/10.1016/j.biosx.2024.100461","url":null,"abstract":"<div><p>Nucleic acid amplification tests (NATs), such as genetic tests using polymerase chain reaction (PCR), are sensitive methods for detecting pathogens and food contamination. The rapid, easy, and inexpensive detection of amplicons, DNA, or RNA is key to realizing on-site NATs. We have previously developed a novel amplicon detection method using magnetic microbeads based on the hydrophobicity of DNA in deionized water. In this study, we aimed to expand the method for the detection of multiplex DNA amplicons. Tagged primers and probes for selective attachment were used to detect amplicons from two strawberry pathogens. The amplicon-labeled magnetic microbeads were placed in the round-bottom well of a hydrophilic glass substrate. The attachment of amplicons to the magnetic microbeads changed their surface from hydrophilic to hydrophobic. The magnetized microbeads concentrated at the bottom when the substrate was placed on a permanent magnet, and the concentrated microbeads were easily recognizable by the naked eye. Microbeads without amplicons were adsorbed over a broad area of the bottom of the glass well owing to their hydrophilicity. The appropriate tag probe was attached to specific amplicons for detection, and each amplicon from multiplex PCR was selectively detected within approximately 15 min. Notably, this method requires no electric power and contributes to the realization of on-site NAT detection. This study presents a simple and rapid method for the selective detection of multiplex PCR amplicons using DNA–DNA hybridization.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"18 ","pages":"Article 100461"},"PeriodicalIF":10.61,"publicationDate":"2024-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000256/pdfft?md5=b6393cdf4448751b1df16d8034f5d85c&pid=1-s2.0-S2590137024000256-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140141729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A study on sensitivity, reproducibility, and stability of sourness and saltiness taste sensors using a mixture of lipid membranes 关于使用脂膜混合物的酸味和咸味传感器的灵敏度、再现性和稳定性的研究
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-13 DOI: 10.1016/j.biosx.2024.100459
Rita Prasetyowati , Rizky Aflaha , Hanif Khoirudin , Moch. Rifqi Tamara , Roto Roto , Pekik Nurwantoro , Kuwat Triyana

Our study successfully fabricated sourness and saltiness sensors and investigated the response toward acetic acid and sodium chloride as the sourness and saltiness sample solutions, respectively. The sensors were made using a lipid membrane with a mixture of two materials. The fabricated sensors can detect the concentration of a small amount of 0.03 mM for the sourness sensor and 0.316 mM for the saltiness sensor, much lower than the human tongue threshold. Moreover, the sensors show a directly proportional response for both sourness and saltiness sensors in the range of 0.03–3 mM of acetic acid and 0.316–31.6 mM of sodium chloride, respectively. The interaction between positive charge in the lipid membrane and anionic species in the sample solution was believed to be the sensing mechanism in this research. Both sensors were refabricated three times, and the saltiness sensor exhibited a similar response when exposed to 3.16 mM of sodium chloride, while the sourness sensor still has to improve its reproducibility. In addition, the fabricated sensors were also tested on three consecutive days to observe the stability.

我们的研究成功制作了酸味和咸味传感器,并研究了它们分别对醋酸和氯化钠作为酸味和咸味样品溶液的反应。传感器是用两种材料的混合物制成的脂质膜。制作出的传感器能检测到的酸味浓度和咸味浓度分别为 0.03 毫摩尔和 0.316 毫摩尔,远低于人类舌头的阈值。此外,在醋酸浓度为 0.03-3 毫摩尔和氯化钠浓度为 0.316-31.6 毫摩尔的范围内,酸味和咸味传感器都显示出直接的比例响应。在这项研究中,脂膜中的正电荷与样品溶液中的阴离子物质之间的相互作用被认为是传感机制。这两种传感器都被重新制作了三次,当暴露在 3.16 毫摩尔氯化钠溶液中时,咸味传感器表现出相似的响应,而酸味传感器的重现性仍有待提高。此外,还对制作好的传感器进行了连续三天的测试,以观察其稳定性。
{"title":"A study on sensitivity, reproducibility, and stability of sourness and saltiness taste sensors using a mixture of lipid membranes","authors":"Rita Prasetyowati ,&nbsp;Rizky Aflaha ,&nbsp;Hanif Khoirudin ,&nbsp;Moch. Rifqi Tamara ,&nbsp;Roto Roto ,&nbsp;Pekik Nurwantoro ,&nbsp;Kuwat Triyana","doi":"10.1016/j.biosx.2024.100459","DOIUrl":"https://doi.org/10.1016/j.biosx.2024.100459","url":null,"abstract":"<div><p>Our study successfully fabricated sourness and saltiness sensors and investigated the response toward acetic acid and sodium chloride as the sourness and saltiness sample solutions, respectively. The sensors were made using a lipid membrane with a mixture of two materials. The fabricated sensors can detect the concentration of a small amount of 0.03 mM for the sourness sensor and 0.316 mM for the saltiness sensor, much lower than the human tongue threshold. Moreover, the sensors show a directly proportional response for both sourness and saltiness sensors in the range of 0.03–3 mM of acetic acid and 0.316–31.6 mM of sodium chloride, respectively. The interaction between positive charge in the lipid membrane and anionic species in the sample solution was believed to be the sensing mechanism in this research. Both sensors were refabricated three times, and the saltiness sensor exhibited a similar response when exposed to 3.16 mM of sodium chloride, while the sourness sensor still has to improve its reproducibility. In addition, the fabricated sensors were also tested on three consecutive days to observe the stability.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"18 ","pages":"Article 100459"},"PeriodicalIF":10.61,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000232/pdfft?md5=5c31ad7339cdfd000f913dfcd76429d8&pid=1-s2.0-S2590137024000232-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140145369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Purpald-functionalized biosensor for simultaneous electrochemical detection of ascorbic acid, uric acid, L-cysteine and lipoic acid 用于同时电化学检测抗坏血酸、尿酸、L-半胱氨酸和硫辛酸的 Purpald 功能化生物传感器
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-08 DOI: 10.1016/j.biosx.2024.100458
Pandiaraja Varatharajan , Muniyandi Maruthupandi , Vinoth Kumar Ponnusamy , Nagamalai Vasimalai

The polymer purpald (4-amino-3-hydrazino-5-mercapto-1,2,4-triazole) film on glassy carbon electrode (p-Purpald@GCE) was fabricated using purpald monomer by electropolymerization method, and the modified electrode was applied as a probe for the simultaneous sensing of ascorbic acid (AA), uric acid (UA), L-cysteine (L-Cys) and lipoic acid (LA). The modified p-Purpald@GCE was well characterized by Scanning electrode microscopy (SEM), X-ray photoelectron spectroscopy (XPS), Cyclic Voltammetry (CV), Electrochemical impedance spectroscopy (EIS) and Differential Pulse Voltammetry (DPV) techniques. CV, EIS results were confirmed the good electrocatayst nature of p-Purpald@GCE. Independent and simultaneous detection of AA, UA, L-Cys, and LA ware performed by DPV method. For Independent detection, based on the oxidation current changes, we have calculated the limit of detection (LOD) of 392, 137, 341 and 200 nM (LOD) = 3S/m) for AA, UA, L-Cys and LA, respectively. The simultaneous detection of AA, UA, L-Cys, and LA executed and LOD found to be 364, 132, 275 and 192 nM, respectively. The modified electrode shows the high selectivity towards AA, UA, L-Cys and LA even in the presence of high concentration of other interferences. The developed sensor technique will be useful for the sensitive and simultaneous detection of AA, UA, L-Cys, and LA in food and clinical samples.

利用嘌呤单体通过电聚合法在玻璃碳电极上制备了聚合物嘌呤(4-氨基-3-肼基-5-巯基-1,2,4-三唑)薄膜(p-Purpald@GCE),并将修饰后的电极作为探针同时检测抗坏血酸(AA)、尿酸(UA)、L-半胱氨酸(L-Cys)和硫辛酸(LA)。通过扫描电极显微镜(SEM)、X 射线光电子能谱(XPS)、循环伏安法(CV)、电化学阻抗能谱(EIS)和差分脉冲伏安法(DPV)等技术对改性的 p-Purpald@GCE 进行了表征。CV、EIS 结果证实了 p-Purpald@GCE 具有良好的电性能。利用 DPV 方法对 AA、UA、L-Cys 和 LA 器皿进行了独立和同步检测。在独立检测中,根据氧化电流的变化,我们计算出 AA、UA、L-Cys 和 LA 的检测限(LOD)分别为 392、137、341 和 200 nM(LOD)= 3S/m)。同时检测 AA、UA、L-Cys 和 LA 的结果和 LOD 分别为 364、132、275 和 192 nM。改良电极对 AA、UA、L-Cys 和 LA 具有很高的选择性,即使存在高浓度的其他干扰。所开发的传感器技术将有助于灵敏地同时检测食品和临床样品中的 AA、UA、L-Cys 和 LA。
{"title":"Purpald-functionalized biosensor for simultaneous electrochemical detection of ascorbic acid, uric acid, L-cysteine and lipoic acid","authors":"Pandiaraja Varatharajan ,&nbsp;Muniyandi Maruthupandi ,&nbsp;Vinoth Kumar Ponnusamy ,&nbsp;Nagamalai Vasimalai","doi":"10.1016/j.biosx.2024.100458","DOIUrl":"10.1016/j.biosx.2024.100458","url":null,"abstract":"<div><p>The polymer purpald (4-amino-3-hydrazino-5-mercapto-1,2,4-triazole) film on glassy carbon electrode (p-Purpald@GCE) was fabricated using purpald monomer by electropolymerization method, and the modified electrode was applied as a probe for the simultaneous sensing of ascorbic acid (AA), uric acid (UA), L-cysteine (L-Cys) and lipoic acid (LA). The modified p-Purpald@GCE was well characterized by Scanning electrode microscopy (SEM), X-ray photoelectron spectroscopy (XPS), Cyclic Voltammetry (CV), Electrochemical impedance spectroscopy (EIS) and Differential Pulse Voltammetry (DPV) techniques. CV, EIS results were confirmed the good electrocatayst nature of p-Purpald@GCE. Independent and simultaneous detection of AA, UA, L-Cys, and LA ware performed by DPV method. For Independent detection, based on the oxidation current changes, we have calculated the limit of detection (LOD) of 392, 137, 341 and 200 nM (LOD) = 3S/m) for AA, UA, L-Cys and LA, respectively. The simultaneous detection of AA, UA, L-Cys, and LA executed and LOD found to be 364, 132, 275 and 192 nM, respectively. The modified electrode shows the high selectivity towards AA, UA, L-Cys and LA even in the presence of high concentration of other interferences. The developed sensor technique will be useful for the sensitive and simultaneous detection of AA, UA, L-Cys, and LA in food and clinical samples.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"17 ","pages":"Article 100458"},"PeriodicalIF":10.61,"publicationDate":"2024-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000220/pdfft?md5=66f27f51a9ee52632ea406e3046188cb&pid=1-s2.0-S2590137024000220-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140084143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Green sources for carbon dots synthesis in sensing for food application – A review 在食品应用传感中合成碳点的绿色来源--综述
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-07 DOI: 10.1016/j.biosx.2024.100460
Amru Daulay , Lukman Hakim Nasution , Miftahul Huda , Muhammad Amin , Muhamad Nikmatullah , Supiyani , Yusmiati

Carbon dots (CDs) are the most promising nanomaterials of zero-dimensional nanoparticle materials because they have strong fluorescence properties, good photoluminescence conversion, stability, and inter-charge transfer performance. CDs also have the advantages of good biocompatibility, low toxicity, and hydrophilic properties. CDs are generally synthesized through two approaches: top-down and bottom-up. Green synthesis of environmentally friendly CDs with easy and simple procedures has become an exciting concern lately and in the future. In addition to green synthesis, green carbon sources such as biomass waste have promising potential. The advantages of fluorescence CDs make them applicable in food sensing. Fluorescent resonance energy transfer, photoinduced electron transfer, and internal screening effect mechanisms enable precise detection of heavy metal ions, food additives, foodborne pathogens, nutrient composition, pesticide residues, and veterinary drug residues. This review provides a brief overview and future perspectives on green synthesis CDs and their applications for more advanced food sensing in food safety analysis.

碳点(CD)是零维纳米粒子材料中最有前途的纳米材料,因为它具有强荧光特性、良好的光致发光转换、稳定性和电荷间转移性能。CD 还具有良好的生物相容性、低毒性和亲水性等优点。光盘一般通过自上而下和自下而上两种方法合成。以简单易行的方法绿色合成环境友好型 CD 已成为近期和未来令人关注的问题。除了绿色合成,生物质废料等绿色碳源也具有广阔的发展前景。荧光 CD 的优势使其适用于食品传感。通过荧光共振能量转移、光诱导电子转移和内部筛选效应机制,可精确检测重金属离子、食品添加剂、食源性病原体、营养成分、农药残留和兽药残留。本综述简要概述了绿色合成 CD 及其在食品安全分析中更先进的食品传感应用,并对其未来前景进行了展望。
{"title":"Green sources for carbon dots synthesis in sensing for food application – A review","authors":"Amru Daulay ,&nbsp;Lukman Hakim Nasution ,&nbsp;Miftahul Huda ,&nbsp;Muhammad Amin ,&nbsp;Muhamad Nikmatullah ,&nbsp;Supiyani ,&nbsp;Yusmiati","doi":"10.1016/j.biosx.2024.100460","DOIUrl":"https://doi.org/10.1016/j.biosx.2024.100460","url":null,"abstract":"<div><p>Carbon dots (CDs) are the most promising nanomaterials of zero-dimensional nanoparticle materials because they have strong fluorescence properties, good photoluminescence conversion, stability, and inter-charge transfer performance. CDs also have the advantages of good biocompatibility, low toxicity, and hydrophilic properties. CDs are generally synthesized through two approaches: top-down and bottom-up. Green synthesis of environmentally friendly CDs with easy and simple procedures has become an exciting concern lately and in the future. In addition to green synthesis, green carbon sources such as biomass waste have promising potential. The advantages of fluorescence CDs make them applicable in food sensing. Fluorescent resonance energy transfer, photoinduced electron transfer, and internal screening effect mechanisms enable precise detection of heavy metal ions, food additives, foodborne pathogens, nutrient composition, pesticide residues, and veterinary drug residues. This review provides a brief overview and future perspectives on green synthesis CDs and their applications for more advanced food sensing in food safety analysis.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"17 ","pages":"Article 100460"},"PeriodicalIF":10.61,"publicationDate":"2024-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000244/pdfft?md5=49a621ca800c79a4fed1c122976543e3&pid=1-s2.0-S2590137024000244-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140134486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gold nanoparticle–based lateral-flow immunochromatographic biosensing assays for the diagnosis of infections 基于金纳米粒子的横向流动免疫层析生物传感分析仪用于感染诊断
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-06 DOI: 10.1016/j.biosx.2024.100457
Olga I. Guliy, Lev A. Dykman

Infections cause concern for mankind, and sometimes their diagnosis may take much time. Owing to its high sensitivity, rapidity, and specificity, the immunochromatographic assay (ICA) is used widely to diagnose infections. The use of the ICA for this purpose makes it possible to detect dangerous diseases early, prevent their progress, strongly reduce the treatment cost and mortality, and increase life expectancy. One promising ICA format involves the use of gold nanoparticles. Here we present the principles and history of ICA use for the diagnosis of infections and discuss the prospects for using gold nanoparticles in the ICA. We present data on the methods used to make and conjugate gold nanoparticles and on the effect of particle size and shape on ICA sensitivity. We discuss the prospects for using the ICA to diagnose bacterial and viral infections, and we review instrumental methods for quantifying ICA results. Finally, we discuss the prospects for using the gold nanoparticle–based ICA in the diagnosis of infections.

感染是人类关注的问题,有时其诊断需要花费大量时间。由于免疫层析(ICA)具有高灵敏度、快速性和特异性,因此被广泛用于诊断感染。利用免疫层析技术可以及早发现危险的疾病,防止其恶化,大大降低治疗成本和死亡率,并延长预期寿命。一种很有前景的 ICA 形式是使用金纳米粒子。在此,我们介绍了 ICA 用于诊断感染的原理和历史,并讨论了在 ICA 中使用金纳米粒子的前景。我们介绍了金纳米粒子的制造和共轭方法,以及粒度和形状对 ICA 灵敏度的影响。我们讨论了使用 ICA 诊断细菌和病毒感染的前景,并回顾了量化 ICA 结果的仪器方法。最后,我们讨论了基于金纳米粒子的 ICA 在感染诊断中的应用前景。
{"title":"Gold nanoparticle–based lateral-flow immunochromatographic biosensing assays for the diagnosis of infections","authors":"Olga I. Guliy,&nbsp;Lev A. Dykman","doi":"10.1016/j.biosx.2024.100457","DOIUrl":"10.1016/j.biosx.2024.100457","url":null,"abstract":"<div><p>Infections cause concern for mankind, and sometimes their diagnosis may take much time. Owing to its high sensitivity, rapidity, and specificity, the immunochromatographic assay (ICA) is used widely to diagnose infections. The use of the ICA for this purpose makes it possible to detect dangerous diseases early, prevent their progress, strongly reduce the treatment cost and mortality, and increase life expectancy. One promising ICA format involves the use of gold nanoparticles. Here we present the principles and history of ICA use for the diagnosis of infections and discuss the prospects for using gold nanoparticles in the ICA. We present data on the methods used to make and conjugate gold nanoparticles and on the effect of particle size and shape on ICA sensitivity. We discuss the prospects for using the ICA to diagnose bacterial and viral infections, and we review instrumental methods for quantifying ICA results. Finally, we discuss the prospects for using the gold nanoparticle–based ICA in the diagnosis of infections.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"17 ","pages":"Article 100457"},"PeriodicalIF":10.61,"publicationDate":"2024-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000219/pdfft?md5=8654bd97075b580b24f5f83aa803d582&pid=1-s2.0-S2590137024000219-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140054659","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Non-enzymatic electrochemical sensing platform based on metal oxide-loaded biopolymer for voltammetric measurement of hepatoprotective metadoxine drug in pharmaceutical formulation and human blood serum 基于金属氧化物负载生物聚合物的非酶电化学传感平台,用于伏安法测量药物制剂和人体血清中的保肝药物美他多辛
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-17 DOI: 10.1016/j.biosx.2024.100453
Manish S. Sengar , Priya Kumari , Neha Sengar , Soami P. Satsangee , Rajeev Jain

This study focuses on the first-ever high-sensitivity, low-cost, and quick response electrochemical estimation of metadoxine (MTD) in pharmaceuticals and human blood serum using a non-enzymatic nanocomposite modified glassy carbon electrode (CuO/CH/GCE) loaded with chitosan. The electroactive surface of GCE was produced by drop-casting a suspension of CuO/CH nanocomposite in N,N-dimethylformamide (DMF) onto the non-enzymatic electrode surface. Synthesized nanocomposite was characterised by using XRD, XPS, EDX, TEM, Raman and FESEM techniques. EIS technique was utilized to study the enhanced charge-transfer phenomenon occurring at the surface of modified sensor. The electrooxidation of MTD at CuO/CH/GCE surface is depending at pH of supporting electrolyte, scan rate and concentration of analyte. CV and SWV technique were used to carry out electrochemical study, optimised voltammetric response is observed in the BR buffer at pH 2.5, with irreversible diffusion-controlled process. Within the linear concentration range of MTD from 1.99 μg/L to 29.56 μg/L, this sensor exhibited lowest LOD (0.64 μg/L) and LOQ (2.14 μg/L). The MTD in pharmaceutical formulation and human blood serum can be determined with this highly selective peak potential (Ep ∼ 1.2 V), repeatable (%RSD 0.91), and reproducible (%RSD 2.31) method. The average percentage recovery in human blood serum and pharmaceutical formulation is 99.89% and 99.90%. This paper reports a lowest LOD value for MTD detection in the comparison with other reported methods (Table S1). None of the selected excipients were found to interfere more than 5% with redox potential of MTD without affecting the performance of sensor.

本研究的重点是首次使用负载壳聚糖的非酶纳米复合修饰玻璃碳电极(CuO/CH/GCE),对药物和人体血清中的甲胺多辛(MTD)进行高灵敏度、低成本和快速响应的电化学估测。通过将 CuO/CH 纳米复合材料在 N,N-二甲基甲酰胺(DMF)中的悬浮液滴铸到非酶电极表面,制得了 GCE 的电活性表面。利用 XRD、XPS、EDX、TEM、拉曼和 FESEM 技术对合成的纳米复合材料进行了表征。利用 EIS 技术研究了改性传感器表面发生的电荷转移增强现象。MTD 在 CuO/CH/GCE 表面的电氧化作用取决于支持电解质的 pH 值、扫描速率和分析物浓度。利用 CV 和 SWV 技术进行了电化学研究,在 pH 值为 2.5 的 BR 缓冲液中观察到了最佳伏安反应,该反应具有不可逆的扩散控制过程。在 MTD 1.99 μg/L 至 29.56 μg/L 的线性浓度范围内,该传感器表现出最低的 LOD(0.64 μg/L)和 LOQ(2.14 μg/L)。该方法具有峰电位选择性高(Ep ∼ 1.2 V)、重复性好(%RSD 0.91)、再现性好(%RSD 2.31)等特点,可用于测定药物制剂和人体血清中的 MTD。在人血清和药物制剂中的平均回收率分别为 99.89% 和 99.90%。与其他已报道的方法相比,本文报告的 MTD 检测 LOD 值最低(表 S1)。所选辅料对 MTD 氧化还原电位的干扰均不超过 5%,不会影响传感器的性能。
{"title":"Non-enzymatic electrochemical sensing platform based on metal oxide-loaded biopolymer for voltammetric measurement of hepatoprotective metadoxine drug in pharmaceutical formulation and human blood serum","authors":"Manish S. Sengar ,&nbsp;Priya Kumari ,&nbsp;Neha Sengar ,&nbsp;Soami P. Satsangee ,&nbsp;Rajeev Jain","doi":"10.1016/j.biosx.2024.100453","DOIUrl":"10.1016/j.biosx.2024.100453","url":null,"abstract":"<div><p>This study focuses on the first-ever high-sensitivity, low-cost, and quick response electrochemical estimation of metadoxine (MTD) in pharmaceuticals and human blood serum using a non-enzymatic nanocomposite modified glassy carbon electrode (CuO/CH/GCE) loaded with chitosan. The electroactive surface of GCE was produced by drop-casting a suspension of CuO/CH nanocomposite in N,N-dimethylformamide (DMF) onto the non-enzymatic electrode surface. Synthesized nanocomposite was characterised by using XRD, XPS, EDX, TEM, Raman and FESEM techniques. EIS technique was utilized to study the enhanced charge-transfer phenomenon occurring at the surface of modified sensor. The electrooxidation of MTD at CuO/CH/GCE surface is depending at pH of supporting electrolyte, scan rate and concentration of analyte. CV and SWV technique were used to carry out electrochemical study, optimised voltammetric response is observed in the BR buffer at pH 2.5, with irreversible diffusion-controlled process. Within the linear concentration range of MTD from 1.99 μg/L to 29.56 μg/L, this sensor exhibited lowest LOD (0.64 μg/L) and LOQ (2.14 μg/L). The MTD in pharmaceutical formulation and human blood serum can be determined with this highly selective peak potential (Ep ∼ 1.2 V), repeatable (%RSD 0.91), and reproducible (%RSD 2.31) method. The average percentage recovery in human blood serum and pharmaceutical formulation is 99.89% and 99.90%. This paper reports a lowest LOD value for MTD detection in the comparison with other reported methods (Table S1). None of the selected excipients were found to interfere more than 5% with redox potential of MTD without affecting the performance of sensor.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"17 ","pages":"Article 100453"},"PeriodicalIF":10.61,"publicationDate":"2024-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000177/pdfft?md5=109df676fa512a6da046be990582ac28&pid=1-s2.0-S2590137024000177-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139927573","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Robust and flexible electrochemical lactate sensors for sweat analysis based on nanozyme-enhanced electrode 基于纳米酶增强电极的用于汗液分析的坚固灵活的电化学乳酸盐传感器
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-15 DOI: 10.1016/j.biosx.2024.100455
Pei Li , Pramod K. Kalambate , Kenneth D. Harris , Abebaw B. Jemere , Xiaowu (Shirley) Tang

In this work, nickel oxide (NiO) nanostructures deposited by glancing angle deposition (GLAD) are fabricated to achieve highly specific catalytic electrooxidation of lactate, replacing the natural enzyme lactate oxidase for electrochemical detection of lactate in sweat. GLAD NiO electrodes exhibit high sensitivity (412 μA mM−1 cm−2), wide linear detection range (1–45 mM), low detection limit (3 μM), and excellent specificity in artificial sweat samples. The unique microporous structure of the GLAD NiO electrodes, combined with their high surface area, high catalytic activity, and excellent conductivity, enhance the performance of the sensor and demonstrate their exceptional effectiveness in the sensitive detection of lactate. In-house fabricated gold counter, and stable solid-state Ag/AgCl reference electrodes, all fabricated on a flexible PET substrate along with the GLAD NiO working electrode, demonstrate performance comparable to commercial Pt auxiliary and Ag/AgCl (1M KCl) reference electrodes in lactate detection, along with outstanding flexibility, tested at various radii of curvature (15 mm, 7.5 mm, and 5 mm). The durable and long-lasting GLAD NiO electrode chips overcome numerous challenges in transport, storage, and operation, paving the way for the development of wearable lactate sensors that can detect lactate levels in sweat.

在这项工作中,利用闪烁角沉积(GLAD)技术沉积出的氧化镍(NiO)纳米结构实现了对乳酸盐的高特异性催化电氧化,从而取代了天然乳酸盐氧化酶,用于电化学检测汗液中的乳酸盐。GLAD NiO 电极在人工汗液样品中表现出高灵敏度(412 μA mM-1 cm-2)、宽线性检测范围(1-45 mM)、低检测限(3 μM)和卓越的特异性。GLAD NiO 电极独特的微孔结构、高比表面积、高催化活性和优异的导电性增强了传感器的性能,并证明了其在灵敏检测乳酸盐方面的卓越功效。在各种曲率半径(15 毫米、7.5 毫米和 5 毫米)条件下进行的测试表明,在乳酸盐检测方面,内部制造的金计数器和稳定的固态 Ag/AgCl 参比电极以及 GLAD 氧化镍工作电极都是在柔性 PET 基质上制造的,其性能可与商用铂辅助电极和 Ag/AgCl (1M KCl)参比电极媲美,而且具有出色的柔韧性。经久耐用的 GLAD 氧化镍电极芯片克服了运输、储存和操作方面的诸多挑战,为开发可检测汗液中乳酸含量的可穿戴式乳酸传感器铺平了道路。
{"title":"Robust and flexible electrochemical lactate sensors for sweat analysis based on nanozyme-enhanced electrode","authors":"Pei Li ,&nbsp;Pramod K. Kalambate ,&nbsp;Kenneth D. Harris ,&nbsp;Abebaw B. Jemere ,&nbsp;Xiaowu (Shirley) Tang","doi":"10.1016/j.biosx.2024.100455","DOIUrl":"10.1016/j.biosx.2024.100455","url":null,"abstract":"<div><p>In this work, nickel oxide (NiO) nanostructures deposited by glancing angle deposition (GLAD) are fabricated to achieve highly specific catalytic electrooxidation of lactate, replacing the natural enzyme lactate oxidase for electrochemical detection of lactate in sweat. GLAD NiO electrodes exhibit high sensitivity (412 μA mM<sup>−1</sup> cm<sup>−2</sup>), wide linear detection range (1–45 mM), low detection limit (3 μM), and excellent specificity in artificial sweat samples. The unique microporous structure of the GLAD NiO electrodes, combined with their high surface area, high catalytic activity, and excellent conductivity, enhance the performance of the sensor and demonstrate their exceptional effectiveness in the sensitive detection of lactate. In-house fabricated gold counter, and stable solid-state Ag/AgCl reference electrodes, all fabricated on a flexible PET substrate along with the GLAD NiO working electrode, demonstrate performance comparable to commercial Pt auxiliary and Ag/AgCl (1M KCl) reference electrodes in lactate detection, along with outstanding flexibility, tested at various radii of curvature (15 mm, 7.5 mm, and 5 mm). The durable and long-lasting GLAD NiO electrode chips overcome numerous challenges in transport, storage, and operation, paving the way for the development of wearable lactate sensors that can detect lactate levels in sweat.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"17 ","pages":"Article 100455"},"PeriodicalIF":10.61,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000190/pdfft?md5=f9c66c171415d33813f315f86d28def3&pid=1-s2.0-S2590137024000190-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139811977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Reduced amplification by phi29 DNA polymerase in the presence of unbound oligos during reaction in RCA phi29 DNA 聚合酶在 RCA 中反应时,如果存在未结合的寡核苷酸,扩增效果会降低
IF 10.61 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-15 DOI: 10.1016/j.biosx.2024.100456
Darío Sánchez Martín , Tingting Li , Marie Wrande , Linus Sandegren , Bo Tian , Maria Strømme , Teresa Zardán Gómez de la Torre

Synthetic single-stranded oligonucleotides play crucial roles in DNA amplification reactions for various applications, such as serving as primers, enabling magnetic separation, and generating dsDNA for subsequent digestion. Typically, these oligos are added in excess to ensure rapid binding to their intended targets. However, while performing rolling circle amplification (RCA) using phi29 DNA polymerase, we observed a decrease in amplification efficiency when oligos were present in the reaction. This phenomenon was consistently observed in two separate laboratories, prompting this study to delve into the root causes responsible for the decline in RCA efficiency. The lowered efficiency was consistent regardless of the manufacturer or any mutations in the phi29 polymerase. We identified several variables that influenced RCA efficiency, mainly the length of the oligos used and the presence of modifications, particularly those obstructing 3’ end digestion. This strongly suggests that the exonuclease domain of phi29 DNA polymerase is responsible for the competition-based inhibition. Our investigation shows that even picomole quantities of oligos can significantly reduce total DNA production during the phi29 DNA polymerase-mediated amplification process. Conversely, the addition of oligos to the reaction did not impede the efficiency of Bst 3.0 polymerase, likely due to the lack of an exonuclease domain of said polymerase. While increasing the quantity of phi29 DNA polymerase in the reaction partially alleviated the adverse effects of excess oligos, we believe it is crucial to carefully optimize the oligo quantities to achieve maximum amplification of the desired targets.

合成单链寡核苷酸在各种应用的 DNA 扩增反应中发挥着至关重要的作用,如作为引物、实现磁性分离以及生成供后续消化的 dsDNA。通常情况下,这些寡核苷酸会被过量添加,以确保快速与目标结合。然而,在使用 phi29 DNA 聚合酶进行滚圆扩增(RCA)时,我们发现当反应中存在寡聚物时,扩增效率会降低。这一现象在两个不同的实验室中被持续观察到,促使本研究深入探讨导致 RCA 效率下降的根本原因。无论生产商是哪家,也无论 phi29 聚合酶是否发生了突变,效率下降的现象都是一致的。我们发现了影响 RCA 效率的几个变量,主要是所用寡核苷酸的长度和是否存在修饰,尤其是那些阻碍 3' 端消化的修饰。这强烈表明,phi29 DNA 聚合酶的外切酶结构域是竞争性抑制的原因。我们的研究表明,在 phi29 DNA 聚合酶介导的扩增过程中,即使是皮摩尔量的寡聚物也能显著减少 DNA 的总产量。相反,在反应中加入寡聚物并不会影响 Bst 3.0 聚合酶的效率,这可能是因为该聚合酶缺乏外切酶结构域。虽然在反应中增加 phi29 DNA 聚合酶的数量部分缓解了过量寡聚物的不利影响,但我们认为仔细优化寡聚物的数量以最大限度地扩增所需目标是至关重要的。
{"title":"Reduced amplification by phi29 DNA polymerase in the presence of unbound oligos during reaction in RCA","authors":"Darío Sánchez Martín ,&nbsp;Tingting Li ,&nbsp;Marie Wrande ,&nbsp;Linus Sandegren ,&nbsp;Bo Tian ,&nbsp;Maria Strømme ,&nbsp;Teresa Zardán Gómez de la Torre","doi":"10.1016/j.biosx.2024.100456","DOIUrl":"10.1016/j.biosx.2024.100456","url":null,"abstract":"<div><p>Synthetic single-stranded oligonucleotides play crucial roles in DNA amplification reactions for various applications, such as serving as primers, enabling magnetic separation, and generating dsDNA for subsequent digestion. Typically, these oligos are added in excess to ensure rapid binding to their intended targets. However, while performing rolling circle amplification (RCA) using phi29 DNA polymerase, we observed a decrease in amplification efficiency when oligos were present in the reaction. This phenomenon was consistently observed in two separate laboratories, prompting this study to delve into the root causes responsible for the decline in RCA efficiency. The lowered efficiency was consistent regardless of the manufacturer or any mutations in the phi29 polymerase. We identified several variables that influenced RCA efficiency, mainly the length of the oligos used and the presence of modifications, particularly those obstructing 3’ end digestion. This strongly suggests that the exonuclease domain of phi29 DNA polymerase is responsible for the competition-based inhibition. Our investigation shows that even picomole quantities of oligos can significantly reduce total DNA production during the phi29 DNA polymerase-mediated amplification process. Conversely, the addition of oligos to the reaction did not impede the efficiency of Bst 3.0 polymerase, likely due to the lack of an exonuclease domain of said polymerase. While increasing the quantity of phi29 DNA polymerase in the reaction partially alleviated the adverse effects of excess oligos, we believe it is crucial to carefully optimize the oligo quantities to achieve maximum amplification of the desired targets.</p></div>","PeriodicalId":260,"journal":{"name":"Biosensors and Bioelectronics: X","volume":"17 ","pages":"Article 100456"},"PeriodicalIF":10.61,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590137024000207/pdfft?md5=d287c9aee31a57315a7717b990891ab8&pid=1-s2.0-S2590137024000207-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139872072","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biosensors and Bioelectronics: X
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1