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Enabling Model-Based Design for Real-Time Spike Detection 实现基于模型的实时尖峰检测设计
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-02-03 DOI: 10.1109/OJEMB.2025.3537768
Mattia Di Florio;Yannick Bornat;Marta Carè;Vinicius Rosa Cota;Stefano Buccelli;Michela Chiappalone
Goal: This study addresses the inherent difficulties in the creation of neuroengineering devices for real-time neural signal processing, a task typically characterized by intricate and technically demanding processes. Beneath the substantial hardware advancements in neurotechnology, there is often rather complex low-level code that poses challenges in terms of development, documentation, and long-term maintenance. Methods: We adopted an alternative strategy centered on Model-Based Design (MBD) to simplify the creation of neuroengineering systems and reduce the entry barriers. MBD offers distinct advantages by streamlining the design workflow, from modelling to implementation, thus facilitating the development of intricate systems. A spike detection algorithm has been implemented on a commercially available system based on a Field-Programmable Gate Array (FPGA) that combines neural probe electronics with configurable integrated circuit. The entire process of data handling and data processing was performed within the Simulink environment, with subsequent generation of hardware description language (HDL) code tailored to the FPGA hardware. Results: The validation was conducted through in vivo experiments involving six animals and demonstrated the capability of our MBD-based real time processing (latency <=>Conclusions: This methodology can have a significant impact in the development of neuroengineering systems by speeding up the prototyping of various system architectures. We have made all project code files open source, thereby providing free access to fellow scientists interested in the development of neuroengineering systems.
目标:本研究解决了创建用于实时神经信号处理的神经工程设备的固有困难,这是一项典型的任务,其特点是复杂且技术要求高的过程。在神经技术硬件的巨大进步之下,通常存在相当复杂的低级代码,这些代码在开发、文档和长期维护方面构成了挑战。方法:采用基于模型设计(MBD)的替代策略,简化神经工程系统的创建,降低进入壁垒。MBD通过简化设计工作流程(从建模到实现)提供了独特的优势,从而促进了复杂系统的开发。在基于现场可编程门阵列(FPGA)的商用系统上实现了一种尖峰检测算法,该系统将神经探针电子学与可配置集成电路相结合。数据处理和数据处理的整个过程在Simulink环境中完成,随后生成针对FPGA硬件的硬件描述语言(HDL)代码。结果:通过涉及6只动物的体内实验进行了验证,并证明了我们基于mbd的实时处理能力(延迟)。结论:该方法可以通过加快各种系统架构的原型设计,对神经工程系统的开发产生重大影响。我们已经将所有项目代码文件开源,从而为对神经工程系统开发感兴趣的科学家同行提供免费访问。
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引用次数: 0
Ultrasound Segmentation Using Semi-Supervised Learning: Application in Point-of-Care Sarcopenia Assessment 使用半监督学习的超声分割:在即时肌少症评估中的应用
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-31 DOI: 10.1109/OJEMB.2025.3537560
Hamza Rasaee;Maryia Samuel;Bahareh Behboodi;Jonathan Afilalo;Hassan Rivaz
Ultrasound imaging is crucial in medical diagnostics, offering real-time visualization of internal anatomical structures. However, accurate automatic segmentation of ultrasound images remains challenging, particularly in scenarios with limited labeled data. In this paper, we propose a semi-supervised learning approach for ultrasound image segmentation, leveraging the statistics of data in unlabeled images to enhance segmentation accuracy. Our method builds upon the encoder-decoder architecture and incorporates innovative semi-supervised learning techniques based on contrastive learning. We have collected ultrasound images from 80 patients and 34 healthy volunteers, focusing on applications in sarcopenia assessment and emergency response scenarios. We demonstrate the effectiveness of our approach through extensive experiments on expert segmentations in this dataset.Our results demonstrate the superior performance of the proposed method across various training data splits (i.e., 1%, 5%, 10%, 20%, 30%, and 100%). While U-NET performed the best with 100% of the training data (i.e., 154 annotated images), the proposed method achieved comparable performance with only 10% of the data (i.e., 16 annotated images). Furthermore, statistical analysis confirmed that our method significantly outperforms existing models, including U-NET, CCT, and UniMatch, in most scenarios (i.e., training set splits). These findings highlight the robustness and efficiency of the proposed method, especially in environments where labeled data is scarce
超声成像在医学诊断中是至关重要的,它提供了内部解剖结构的实时可视化。然而,超声图像的准确自动分割仍然具有挑战性,特别是在标记数据有限的情况下。在本文中,我们提出了一种半监督学习的超声图像分割方法,利用未标记图像中的数据统计来提高分割精度。我们的方法建立在编码器-解码器架构的基础上,并结合了基于对比学习的创新半监督学习技术。我们收集了80名患者和34名健康志愿者的超声图像,重点研究了在肌肉减少症评估和应急响应场景中的应用。我们通过对该数据集的专家分割进行广泛的实验来证明我们方法的有效性。我们的结果证明了所提出的方法在各种训练数据分割(即1%,5%,10%,20%,30%和100%)上的优越性能。虽然U-NET在100%的训练数据(即154张带注释的图像)上表现最好,但所提出的方法仅在10%的数据(即16张带注释的图像)上取得了可比的性能。此外,统计分析证实,我们的方法在大多数场景(即训练集分割)中显著优于现有模型,包括U-NET, CCT和UniMatch。这些发现突出了所提出方法的鲁棒性和效率,特别是在标记数据稀缺的环境中
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引用次数: 0
Low-Rank Adaptation of Pre-Trained Large Vision Models for Improved Lung Nodule Malignancy Classification 预训练大视觉模型的低秩自适应改进肺结节恶性分类
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-16 DOI: 10.1109/OJEMB.2025.3530841
Benjamin P. Veasey;Amir A. Amini
Goal: This paper investigates using Low-Rank Adaptation (LoRA) to adapt large vision models (LVMs) pretrained with self-supervised learning (SSL) for lung nodule malignancy classification. Inspired by LoRA's success in the field of Natural Language Processing, we hypothesized that such an adaptation technique can significantly improve classification performance, parameter efficiency, and training speed for the novel application of lung image cancer diagnostic. Methods: Utilizing two comprehensive lung nodule datasets, NLSTx and LIDC, which together encompass a diverse array of biopsy- and radiologist-confirmed lung CT scans, our rigorous experimental setup demonstrates that LoRA-adapted models markedly surpass traditional fine-tuning methods. Results: The best LoRA-adapted model achieved a 3% increase in ROC AUC over the state-of-the-art model, utilized 89.9% fewer parameters, and reduced training times by 36.5%. Conclusions: Integrating LoRA with out-of-domain pretrained LVMs offers a promising avenue for enhancing performance of lung nodule malignancy classification. The annotations for the NLSTx dataset are also released with this paper on GitHub at https://github.com/benVZ/NLSTx.
目的:研究利用低秩自适应(Low-Rank Adaptation, LoRA)对自我监督学习(self-supervised learning, SSL)预训练的大视觉模型(large vision models, lvm)进行肺结节恶性分类的方法。受LoRA在自然语言处理领域成功的启发,我们假设这种自适应技术可以显著提高分类性能、参数效率和训练速度,用于肺图像癌症诊断的新应用。方法:利用两个综合的肺结节数据集NLSTx和LIDC,其中包括各种活检和放射科医生证实的肺部CT扫描,我们严格的实验设置表明,适应lora的模型明显优于传统的微调方法。结果:与最先进的模型相比,最佳的lora适应模型的ROC AUC增加了3%,使用的参数减少了89.9%,训练时间减少了36.5%。结论:将LoRA与域外预训练lvm相结合,为提高肺结节恶性分类性能提供了一条有希望的途径。NLSTx数据集的注释也随本文一起发布在GitHub上https://github.com/benVZ/NLSTx。
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引用次数: 0
A Review on Deep Learning for Quality of Life Assessment Through the Use of Wearable Data 基于可穿戴数据的深度学习生活质量评估研究综述
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-14 DOI: 10.1109/OJEMB.2025.3526457
Vasileios Skaramagkas;Ioannis Kyprakis;Georgia S. Karanasiou;Dimitris I. Fotiadis;Manolis Tsiknakis
Quality of Life (QoL) assessment has evolved over time, encompassing diverse aspects of human existence beyond just health. This paper presents a comprehensive review of the integration of Deep Learning (DL) techniques in QoL assessment, focusing on the analysis of wearable data. QoL, as defined by the World Health Organisation, encompasses physical, mental, and social well-being, making it a multifaceted concept. Traditional QoL assessment methods, often reliant on subjective reports or informal questioning, face challenges in quantification and standardization. To address these challenges, DL, a branch of machine learning inspired by the human brain, has emerged as a promising tool. DL models can analyze vast and complex datasets, including patient-reported outcomes, medical images, and physiological signals, enabling a deeper understanding of factors influencing an individual's QoL. Notably, wearable sensory devices have gained prominence, offering real-time data on vital signs and enabling remote healthcare monitoring. This review critically examines DL's role in QoL assessment through the use of wearable data, with particular emphasis on the subdomains of physical and psychological well-being. By synthesizing current research and identifying knowledge gaps, this review provides valuable insights for researchers, clinicians, and policymakers aiming to enhance QoL assessment with DL. Ultimately, the paper contributes to the adoption of advanced technologies to improve the well-being and QoL of individuals from diverse backgrounds.
生活质量(QoL)评估随着时间的推移而发展,涵盖了人类生存的各个方面,而不仅仅是健康。本文全面回顾了深度学习(DL)技术在生活质量评估中的集成,重点是可穿戴数据的分析。根据世界卫生组织的定义,生活质量包括身体、精神和社会福祉,是一个多方面的概念。传统的生活质量评估方法往往依赖于主观报告或非正式提问,在量化和标准化方面面临挑战。为了应对这些挑战,受人类大脑启发的机器学习分支DL已经成为一种有前途的工具。深度学习模型可以分析大量复杂的数据集,包括患者报告的结果、医学图像和生理信号,从而更深入地了解影响个人生活质量的因素。值得注意的是,可穿戴传感设备已经获得了突出的地位,可以提供有关生命体征的实时数据,并实现远程医疗监控。这篇综述通过使用可穿戴数据批判性地考察了DL在生活质量评估中的作用,特别强调了身体和心理健康的子领域。通过综合目前的研究和识别知识差距,本综述为旨在加强DL的生活质量评估的研究人员、临床医生和政策制定者提供了有价值的见解。最终,本文有助于采用先进技术来改善来自不同背景的个体的福祉和生活质量。
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引用次数: 0
Non-Invasive Measurement of Elasticity in Glioblastoma Multiforme Validates Decreased TMZ Sensitivity in Astrocyte Co-Culture 多形性胶质母细胞瘤弹性的无创测量证实星形胶质细胞共培养中TMZ敏感性降低
IF 2.9 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-10 DOI: 10.1109/OJEMB.2025.3528194
Megan Mendieta;Maryam Hatami;Manmohan Singh;Sajedeh Saeidi Fard;Mohammad Dehshiri;Alexander Schill;Dmitry Nevozhay;Salavat Aglyamov;Bulent Ozpolat;Konstantin V. Sokolov;Yasemin M. Akay;Kirill V. Larin;Metin Akay
Goal: In this research, we investigated the changes in elasticity of in vitro glioblastoma multiforme (GBM) spheroids when treated with the gold standard chemotherapy for GBM, Temozolomide (TMZ). Additionally, we aimed to use this alternative biomarker to assess how modifying the tumor microenvironment (TME) with the addition of human astrocytes (HA) would influence treatment efficacy. Methods: Spheroid stiffness was investigated using advanced non-invasive optical techniques, nanobomb optical coherence elastography (nb-OCE) and Brillouin microscopy to obtain new biomechanical insights by assessing local tumor progression or response to therapy using GBM cells (LN229). Results: The treated monocultured GBM groups showed a significant decrease in stiffness and increased sensitivity to treatment with TMZ. Treated HA groups across approaches remained relatively unchanged in stiffness. Treated co-culture groups demonstrated significant resistance to treatment with TMZ, where stiffness decreased less than that of the treated LN229 cells. Conclusions: These results confirm earlier findings using cell viability as a biomarker for treatment efficacy, making nb-OCE and Brillouin promising options to probe 3D tumor models in vitro non-invasively.
目的:在这项研究中,我们研究了体外多形性胶质母细胞瘤(GBM)球体在使用替莫唑胺(TMZ)治疗GBM的金标准化疗时弹性的变化。此外,我们的目的是使用这种替代生物标志物来评估添加人星形胶质细胞(HA)修饰肿瘤微环境(TME)如何影响治疗效果。方法:采用先进的非侵入性光学技术、纳米弹光学相干弹性成像(nb-OCE)和布里渊显微镜研究球体刚度,通过评估局部肿瘤进展或对GBM细胞(LN229)治疗的反应,获得新的生物力学见解。结果:单培养GBM组关节僵硬度明显降低,对TMZ的敏感性增加。不同入路处理的HA组在僵硬度上保持相对不变。共培养组对TMZ处理表现出明显的抗性,其硬度下降幅度小于LN229处理组。结论:这些结果证实了将细胞活力作为治疗效果的生物标志物的早期发现,使nb-OCE和Brillouin成为体外无创探测3D肿瘤模型的有希望的选择。
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引用次数: 0
Context-Aware Dual-Task Deep Network for Concurrent Bone Segmentation and Clinical Assessment to Enhance Shoulder Arthroplasty Preoperative planning 上下文感知双任务深度网络并行骨分割和临床评估,以加强肩关节置换术术前计划
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-09 DOI: 10.1109/OJEMB.2025.3527877
Luca Marsilio;Andrea Moglia;Alfonso Manzotti;Pietro Cerveri
Goal: Effective preoperative planning for shoulder joint replacement requires accurate glenohumeral joint (GH) digital surfaces and reliable clinical staging. Methods: xCEL-UNet was designed as a dual-task deep network for humerus and scapula bone reconstruction in CT scans, and assessment of three GH joint clinical conditions, namely osteophyte size (OS), joint space reduction (JS), and humeroscapular alignment (HSA). Results: Trained on a dataset of 571 patients, the model optimized segmentation and classification through transfer learning. It achieved median root mean squared errors of 0.31 and 0.24 mm, and Hausdorff distances of 2.35 and 3.28 mm for the humerus and scapula, respectively. Classification accuracy was 91 for OS, 93 for JS, and 85% for HSA. GradCAM-based activation maps validated the network's interpretability. Conclusions: this framework delivers accurate 3D bone surface reconstructions and dependable clinical assessments of the GH joint, offering robust support for therapeutic decision-making in shoulder arthroplasty.
目的:有效的肩关节置换术术前规划需要准确的肩关节数字面和可靠的临床分期。方法:设计xCEL-UNet作为双任务深度网络,用于肱骨和肩胛骨CT扫描重建,并评估骨肿大小(OS)、关节间隙缩小(JS)和肱骨-肩胛骨对齐(HSA)三种GH关节临床状况。结果:该模型在571例患者数据集上训练,通过迁移学习优化了分割和分类。肱骨和肩胛骨的均方根中位数误差分别为0.31和0.24 mm, Hausdorff距离分别为2.35和3.28 mm。OS的分类准确率为91,JS为93,HSA为85%。基于gradcam的激活图验证了网络的可解释性。结论:该框架提供了准确的3D骨表面重建和GH关节的可靠临床评估,为肩关节置换术的治疗决策提供了强有力的支持。
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引用次数: 0
Remote Monitoring for the Management of Spasticity: Challenges, Opportunities and Proposed Technological Solution 痉挛管理的远程监测:挑战、机遇和提出的技术解决方案
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-30 DOI: 10.1109/OJEMB.2024.3523442
Kavit R. Amin;Samuel R. Smith;Amit N. Pujari;Syed Ali Raza Zaidi;Robert Horne;Atif Shahzad;Christopher Walshaw;Christy Holland;Stephen Halpin;Rory J. O'Connor
Spasticity is disabling feature of long-term neurological conditions that has substantial impact on people’ quality of life. Assessing spasticity and determining the efficacy of current treatments is limited by the measurement tools available in clinical practice. We convened an expert panel of clinicians and engineers to identify a solution to this urgent clinical need. We established that a reliable ambulatory spasticity monitoring system that collates clinically meaningful data remotely would be useful in the management of this complex condition. This paper provides an overview of current practices in managing and monitoring spasticity. Then, the paper describes how a remote monitoring system can help in managing spasticity and identifies challenges in development of such a system. Finally the paper proposes a monitoring system solution that exploits recent advancements in low-energy wearable systems comprising of printable electronics, a personal area network (PAN) to low power wide area networks (LPWAN) alongside back-end cloud infrastructure. The proposed technology will make an important contribution to patient care by allowing, for the first time, longitudinal monitoring of spasticity between clinical follow-up, and thus has life altering and cost-saving implications. This work in spasticity monitoring and management serves as an exemplar for other areas of rehabilitation.
痉挛是长期神经系统疾病的致残特征,对人们的生活质量有重大影响。评估痉挛和确定当前治疗的有效性受到临床实践中可用的测量工具的限制。我们召集了一个由临床医生和工程师组成的专家小组,以确定解决这一迫切临床需求的办法。我们建立了一个可靠的动态痉挛监测系统,远程整理临床有意义的数据,将有助于管理这种复杂的情况。本文概述了目前管理和监测痉挛的实践。然后,本文描述了远程监测系统如何帮助管理痉挛,并确定了开发这种系统的挑战。最后,本文提出了一种监控系统解决方案,该解决方案利用了低能耗可穿戴系统的最新进展,该系统包括可打印电子设备、个人局域网(PAN)、低功耗广域网(LPWAN)以及后端云基础设施。这项提议的技术将首次允许在临床随访期间对痉挛进行纵向监测,从而对患者护理做出重要贡献,从而具有改变生活和节省成本的意义。这项在痉挛监测和管理方面的工作为其他康复领域提供了范例。
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引用次数: 0
IEEE Engineering in Medicine and Biology Society Information IEEE医学与生物工程学会信息
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-17 DOI: 10.1109/OJEMB.2024.3387891
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引用次数: 0
Estimating Maxillary Sinus Volume Using Smartphone Camera 用智能手机相机估计上颌窦容积
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-12 DOI: 10.1109/OJEMB.2024.3516320
Christoforos Meliadis;Emily Feng;Ezekiel Johnson;Wendy Zhu;Paramesh Gopi;Vivek Mohan;Peter H. Hwang;Jacob Johnson;Bryant Y. Lin
Goal: This study aims to introduce a novel method for estimating maxillary sinus volume using smartphone technology, providing an accessible alternative to traditional imaging techniques. Methods: We recruited 40 participants to conduct a comparative analysis between Computed Tomography (CT) and face scans obtained using an Apple iPhone. Utilizing Apple's ARKit for 3D facial mesh modeling, we estimated sinus dimensions based on established craniofacial landmarks and calculated the volume through a geometric approximation of the maxillary sinus. Results: We demonstrated a high degree of agreement between CT and face scans, with Mean Absolute Percentage Errors (MAPE) of 8.006 ± 8.839% (Width), 6.725 ± 4.595% (Height), 9.952 ± 6.733% (Depth), and 10.429 ± 7.409% (Volume). These results suggest the feasibility of this non-invasive approach for clinical use. Conclusions: This method aligns with the growing focus on telemedicine, presenting significant reductions in healthcare costs and radiation exposure from CT scans. It marks a substantial advancement in otolaryngology and maxillofacial surgery, showcasing the integration of smartphone technology in medical diagnostics and opening avenues for innovative, patient-friendly, and cost-effective healthcare solutions.
目的:本研究旨在介绍一种利用智能手机技术估算上颌窦体积的新方法,为传统成像技术提供一种可访问的替代方法。方法:我们招募了40名参与者,对使用苹果iPhone获得的计算机断层扫描(CT)和面部扫描进行比较分析。利用Apple的ARKit进行3D面部网格建模,我们根据已建立的颅面标志估计鼻窦尺寸,并通过上颌窦的几何近似计算体积。结果:CT和面部扫描结果高度一致,平均绝对百分比误差(MAPE)为8.006±8.839%(宽度),6.725±4.595%(高度),9.952±6.733%(深度)和10.429±7.409%(体积)。这些结果提示这种无创入路在临床应用的可行性。结论:该方法与日益关注的远程医疗相一致,可以显著降低医疗成本和CT扫描的辐射暴露。它标志着耳鼻喉科和颌面外科的重大进步,展示了智能手机技术在医疗诊断中的整合,并为创新、患者友好且具有成本效益的医疗解决方案开辟了道路。
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引用次数: 0
EDA, PPG and Skin Temperature as Predictive Signals for Mental Failure by a Statistical Analysis on Stress and Mental Workload 应激和心理负荷统计分析EDA、PPG和皮肤温度作为心理衰竭的预测信号
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-11 DOI: 10.1109/OJEMB.2024.3515473
G. Luzzani;I. Buraioli;G. Guglieri;D. Demarchi
Objective: The growth of autonomous systems interacting with humans leads to assessing operators' stress and mental workload (MWL), especially in safety-critical situations. Therefore, a system providing information about the psychophysiological workers' condition is fundamental and still missing. This paper aims to study the statistical relationship between the variation of Photoplethysmogram signal (PPG), Electrodermal Activity (EDA), and skin temperature with respect to stress and MWL levels, assessed through an ad-hoc developed subjective questionnaire. Results: 43 features were calculated from these signals during the execution of two cognitive tests and processed through a statistical analysis based on Kruskal-Wallis and Mann-Whitney U tests. This analysis proved that about 50% of them offered statistical evidence in differentiating relaxed and altered emotional conditions. Moreover, fifteen features were found to provide sufficient information to detect at the same time stress and MWL. Conclusions: These results demonstrate the feasibility of this approach and push to continue this research about the relationship between physiological signals and the variation of stress and MWL by enhancing the population and considering more biosignals.
目的:与人类互动的自主系统的发展导致评估操作员的压力和精神工作量(MWL),特别是在安全关键情况下。因此,一个提供工人心理生理状况信息的系统是基本的,但仍然缺乏。本文旨在研究光容积图信号(PPG)、皮电活动(EDA)和皮肤温度在应激和MWL水平下的变化之间的统计关系,通过特别开发的主观问卷进行评估。结果:在两个认知测试的执行过程中,从这些信号中计算出43个特征,并根据Kruskal-Wallis和Mann-Whitney U测试进行统计分析。这一分析证明,其中约50%的人在区分放松和改变的情绪状态方面提供了统计证据。此外,还发现了15个特征,为同时检测应力和MWL提供了足够的信息。结论:本研究结果证明了该方法的可行性,并推动了通过增加种群数量和考虑更多的生物信号来进一步研究生理信号与应激和MWL变化之间的关系。
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引用次数: 0
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