In the evolving field of medical imaging and machine learning (ML), this paper introduces a novel framework for evaluating synthetic pulmonary imaging aiming to assess synthetic data quality and applicability. Our study concentrates on synthetic X-ray chest images, crucial for diagnosing respiratory diseases. We employ SPINE (Synthetic Pulmonary Imaging Evaluation) framework, a threefold synthetic images evaluation method including expert domain assessment, statistical data analysis and adversarial evaluation. In order to replicate and validate our methodology, we followed an End-to-End data and model management process which begins with a dataset of Normal and Pneumonia chest X-rays, generating synthetic images using Generative Adversarial Networks (GANs) and training a baseline classifier, essential in the adversarial evaluation axis, testing synthetic images against real data assessing their predictive value. The critical outcome of our approach is the post-market analysis of synthetic images. This innovative method evaluates synthetic images using clinical, statistical, and scientific criteria independently from traditional generation performance metrics. This independent evaluation provides deep insights into the clinical and research effectiveness of the synthetic data. By ensuring these images mirror real data's statistical properties and maintain clinical accuracy, our framework establishes a new standard for the ethical and reliable use of synthetic data in medical imaging and research.
在不断发展的医学成像和机器学习(ML)领域,本文介绍了一种评估合成肺部成像的新型框架,旨在评估合成数据的质量和适用性。我们的研究集中于合成 X 射线胸部图像,这对诊断呼吸系统疾病至关重要。我们采用了SPINE(合成肺成像评估)框架,这是一种三重合成图像评估方法,包括专家领域评估、统计数据分析和对抗评估。为了复制和验证我们的方法,我们采用了端到端的数据和模型管理流程,该流程从正常和肺炎胸部 X 光片数据集开始,使用生成式对抗网络(GAN)生成合成图像,并训练基线分类器。我们的方法的关键成果是对合成图像进行上市后分析。这种创新方法使用临床、统计和科学标准对合成图像进行评估,而不依赖于传统的生成性能指标。通过这种独立评估,可以深入了解合成数据的临床和研究效果。通过确保这些图像反映真实数据的统计特性并保持临床准确性,我们的框架为医学成像和研究中合成数据的道德和可靠使用建立了新的标准。
{"title":"Introducing SPINE: A Holistic Approach to Synthetic Pulmonary Imaging Evaluation Through End-to-End Data and Model Management","authors":"Nikolaos Ntampakis;Vasileios Argyriou;Konstantinos Diamantaras;Konstantinos Goulianas;Panagiotis Sarigiannidis;Ilias Siniosoglou","doi":"10.1109/OJEMB.2024.3426910","DOIUrl":"10.1109/OJEMB.2024.3426910","url":null,"abstract":"In the evolving field of medical imaging and machine learning (ML), this paper introduces a novel framework for evaluating synthetic pulmonary imaging aiming to assess synthetic data quality and applicability. Our study concentrates on synthetic X-ray chest images, crucial for diagnosing respiratory diseases. We employ SPINE (Synthetic Pulmonary Imaging Evaluation) framework, a threefold synthetic images evaluation method including expert domain assessment, statistical data analysis and adversarial evaluation. In order to replicate and validate our methodology, we followed an End-to-End data and model management process which begins with a dataset of Normal and Pneumonia chest X-rays, generating synthetic images using Generative Adversarial Networks (GANs) and training a baseline classifier, essential in the adversarial evaluation axis, testing synthetic images against real data assessing their predictive value. The critical outcome of our approach is the post-market analysis of synthetic images. This innovative method evaluates synthetic images using clinical, statistical, and scientific criteria independently from traditional generation performance metrics. This independent evaluation provides deep insights into the clinical and research effectiveness of the synthetic data. By ensuring these images mirror real data's statistical properties and maintain clinical accuracy, our framework establishes a new standard for the ethical and reliable use of synthetic data in medical imaging and research.","PeriodicalId":33825,"journal":{"name":"IEEE Open Journal of Engineering in Medicine and Biology","volume":"5 ","pages":"576-588"},"PeriodicalIF":2.7,"publicationDate":"2024-07-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=10596687","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141610968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-12DOI: 10.1109/OJEMB.2024.3426912
Manon Valet;Juan M. Iglesias-Artola;Falk Elsner;Anatol W. Fritsch;Otger Campàs
The study of biological processes involving live microscopy techniques requires adequate temperature control to respect the physiology of the organism under study. We present here a design strategy for a microscope temperature stage based on thermoelectric elements. The design allows the user to access a range of temperatures below and above room temperature and can accommodate samples of different geometries. In addition, by cooling simultaneously the sample insert and the objective, we minimize the temperature gradients along the sample for large magnification objectives requiring immersion oil. We illustrate how this design can be used to study the physiology of the zebrafish embryo over the temperature tolerance of this species. We envision that this device could benefit the communities using model and non-model organisms with physiological temperatures different from typical mammalian cell culture incubation in biomedical research.
{"title":"A Heating and Cooling Stage With Fast Temporal Control for Biological Applications","authors":"Manon Valet;Juan M. Iglesias-Artola;Falk Elsner;Anatol W. Fritsch;Otger Campàs","doi":"10.1109/OJEMB.2024.3426912","DOIUrl":"10.1109/OJEMB.2024.3426912","url":null,"abstract":"The study of biological processes involving live microscopy techniques requires adequate temperature control to respect the physiology of the organism under study. We present here a design strategy for a microscope temperature stage based on thermoelectric elements. The design allows the user to access a range of temperatures below and above room temperature and can accommodate samples of different geometries. In addition, by cooling simultaneously the sample insert and the objective, we minimize the temperature gradients along the sample for large magnification objectives requiring immersion oil. We illustrate how this design can be used to study the physiology of the zebrafish embryo over the temperature tolerance of this species. We envision that this device could benefit the communities using model and non-model organisms with physiological temperatures different from typical mammalian cell culture incubation in biomedical research.","PeriodicalId":33825,"journal":{"name":"IEEE Open Journal of Engineering in Medicine and Biology","volume":"5 ","pages":"573-575"},"PeriodicalIF":2.7,"publicationDate":"2024-07-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=10596548","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141611034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}