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Accelerating the understanding of Aspergillus terreus: Epidemiology, physiology, immunology and advances 加快对赤曲霉的了解:流行病学、生理学、免疫学和进展
Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100220
Raman Thakur , Sonia Kumari Shishodia , Ananya Sharma , Arjun Chauhan , Sumanpreet Kaur , Jata Shankar

Aspergillus species encompass a variety of infections, ranging from invasive aspergillosis to allergic conditions, contingent upon the immune status of the host. In this spectrum, Aspergillus terreus stands out due to its emergence as a notable pathogen and its intrinsic resistance to amphotericin-B. The significance of Aspergillus-associated infections has witnessed a marked increase in the past few decades, particularly with the increasing number of immunocompromised individuals. The exploration of epidemiology, morphological transitions, immunopathology, and novel treatment approaches such as new antifungal drugs (PC945, olorofim) and combinational therapy using antifungal drugs and phytochemicals (Phytochemicals: quercetin, shikonin, artemisinin), also using immunotherapies to modulate immune response has resulted in better outcomes. Furthermore, in the context COVID-19 era and its aftermath, fungal infections have emerged as a substantial challenge for both immunocompromised and immunocompetent individuals. This is attributed to the use of immune-suppressing therapies during COVID-19 infections and the increase in transplant cases. Consequently, this review aims to provide an updated overview encompassing the epidemiology, germination events, immunopathology, and novel drug treatment strategies against Aspergillus terreus-associated infections.

曲霉菌种类繁多,从侵袭性曲霉菌病到过敏性疾病,视宿主的免疫状况而定。在这些病菌中,赤曲霉菌因其成为显著的病原体和对两性霉素-B 的固有抗性而脱颖而出。在过去几十年中,曲霉菌相关感染的重要性显著增加,尤其是随着免疫力低下人群的增加。对流行病学、形态转变、免疫病理学和新型治疗方法的探索,如新型抗真菌药物(PC945、orlorofim)以及使用抗真菌药物和植物化学物质(植物化学物质:槲皮素、莽草素、青蒿素)的联合疗法,还使用免疫疗法来调节免疫反应,从而取得了更好的疗效。此外,在 COVID-19 时代及其后,真菌感染已成为免疫力低下者和免疫力正常者面临的巨大挑战。这归因于 COVID-19 感染期间使用的免疫抑制疗法以及移植病例的增加。因此,本综述旨在提供最新的概述,包括流行病学、发芽事件、免疫病理学以及针对曲霉相关感染的新型药物治疗策略。
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引用次数: 0
The search for an antiviral lead molecule to combat the neglected emerging Oropouche virus 寻找抗病毒先导分子,对抗被忽视的新出现的奥罗普切病毒
Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100238
Rafaela dos Santos Peinado , Marielena Vogel Saivish , Gabriela de Lima Menezes , Umberto Laino Fulco , Roosevelt Alves da Silva , Karolina Korostov , Raphael Josef Eberle , Paulo A. Melo , Maurício Lacerda Nogueira , Carolina Colombelli Pacca , Raghuvir Krishnaswamy Arni , Mônika Aparecida Coronado

Oropouche virus (OROV) is a member of the Peribunyaviridae family and the causative agent of a dengue-like febrile illness transmitted by mosquitoes. Although mild symptoms generally occur, complications such as encephalitis and meningitis may develop. A lack of proper diagnosis, makes it a potential candidate for new epidemics and outbreaks like other known arboviruses such as Dengue, Yellow Fever and Zika virus. The study of natural molecules as potential antiviral compounds is a promising alternative for antiviral therapies. Wedelolactone (WDL) has been demonstrated to inhibit some viral proteins and virus replication, making it useful to target a wide range of viruses. In this study, we report the in silico effects of WDL on the OROV N-terminal polymerase and its potential inhibitory effects on several steps of viral infection in mammalian cells in vitro, which revealed that WDL indeed acts as a potential inhibitor molecule against OROV infection.

奥罗普切病毒(OROV)是一种 Peribunyaviridae 科病毒,是通过蚊子传播的登革热样发热疾病的病原体。虽然一般症状较轻,但也可能出现脑炎和脑膜炎等并发症。由于缺乏适当的诊断,它有可能像登革热、黄热病和寨卡病毒等其他已知虫媒病毒一样引发新的流行病和疫情。将天然分子作为潜在的抗病毒化合物进行研究是抗病毒疗法的一种有前途的替代方法。蟛蜞菊内酯(WDL)已被证实能抑制某些病毒蛋白和病毒复制,因此可用于靶向多种病毒。在这项研究中,我们报告了 WDL 对 OROV N 端聚合酶的默克效应及其对哺乳动物细胞体外病毒感染几个步骤的潜在抑制作用,结果显示 WDL 确实是一种潜在的抑制 OROV 感染的分子。
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引用次数: 0
Biotechnological and pharmaceutical potential of twenty-eight novel type strains of Actinomycetes from different environments worldwide 来自全球不同环境的 28 株新型放线菌的生物技术和制药潜力
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100290
Imen Nouioui , Judith Boldt , Alina Zimmermann , Roman Makitrynskyy , Gabriele Pötter , Marlen Jando , Meike Döppner , Sarah Kirstein , Meina Neumann-Schaal , Juan Pablo Gomez-Escribano , Ulrich Nübel , Yvonne Mast
Actinomycetes are a prolific source of bioactive natural compounds many of which are used as antibiotics or other drugs. In this study we investigated the genomic and biochemical diversity of 32 actinobacterial strains that had been deposited at the DSMZ–German Collection of Microorganisms and Cell Cultures decades ago. Genome-based phylogeny and in silico DNA-DNA hybridization supported the assignment of these strains to 26 novel species and two novel subspecies and a reclassification of a Streptomyces species. These results were consistent with the biochemical, enzymatic, and chemotaxonomic features of the strains. Most of the strains showed antimicrobial activities against a range of Gram-positive and Gram-negative bacteria, and against yeast. Genomic analysis revealed the presence of numerous unique biosynthetic gene clusters (BGCs) encoding for potential novel antibiotic and anti-cancer compounds. Strains DSM 41636T and DSM 61640T produced the antibiotic compounds A33853 and SF2768, respectively. Overall, this reflects the significant pharmaceutical and biotechnological potential of the proposed novel type strains and underlines the role of prokaryotic systematics for drug discovery. In order to compensate for the gender gap in naming prokaryotic species, we propose the eponyms for all newly described species to honour female scientists.
放线菌是生物活性天然化合物的丰富来源,其中许多可用作抗生素或其他药物。在这项研究中,我们调查了几十年前存放在德国微生物和细胞培养物保藏中心(DSMZ-German Collection of Microorganisms and Cell Cultures)的 32 株放线菌的基因组和生化多样性。基于基因组的系统发育和 DNA-DNA 杂交支持将这些菌株归入 26 个新种和 2 个新亚种,并对一个链霉菌种进行了重新分类。这些结果与菌株的生化、酶学和化学分类学特征一致。大多数菌株对一系列革兰氏阳性菌、革兰氏阴性菌和酵母菌具有抗菌活性。基因组分析表明,菌株中存在许多独特的生物合成基因簇(BGC),这些基因簇可编码潜在的新型抗生素和抗癌化合物。菌株 DSM 41636T 和 DSM 61640T 分别产生了抗生素化合物 A33853 和 SF2768。总体而言,这反映了拟议的新型菌株在制药和生物技术方面的巨大潜力,并强调了原核生物系统学在药物发现方面的作用。为了弥补原核生物物种命名中的性别差距,我们建议将所有新描述物种的外来名称命名为女性科学家。
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引用次数: 0
Insights into the unique roles of extracellular vesicles for gut health modulation: Mechanisms, challenges, and perspectives 深入了解细胞外囊泡在调节肠道健康方面的独特作用:机制、挑战和前景
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100301
Qiming Wu , Juntao Kan , Caili Fu , Xin Liu , Zhengying Cui , Sixu Wang , Yi Le , Zhanming Li , Qin Liu , Yuyu Zhang , Jun Du
Extracellular vesicles (EVs), which play significant regulatory roles in maintaining homeostasis and influencing immune responses, significantly impact gut microbiota composition and function, affecting overall gut health. Despite considerable progress, there are still knowledge gaps regarding the mechanisms by which EVs, including plant-derived EVs (PDEVs), animal-derived EVs (ADEVs), and microbiota-derived EVs (MDEVs), modulate gut health. This review delves into the roles and mechanisms of EVs from diverse sources in regulating gut health, focusing on their contributions to maintaining epithelial barrier integrity, facilitating tissue healing, eliciting immune responses, controlling pathogens, and shaping microbiota. We emphasize open challenges and future perspectives for harnessing EVs in the modulation of gut health to gain a deeper understanding of their roles and impact. Importantly, a comprehensive research framework is presented to steer future investigations into the roles and implications of EVs on gut health, facilitating a more profound comprehension of this emerging field.
细胞外囊泡 (EVs) 在维持体内平衡和影响免疫反应方面发挥着重要的调节作用,对肠道微生物群的组成和功能有显著影响,从而影响整体肠道健康。尽管取得了相当大的进展,但关于EVs(包括植物源性EVs(PDEVs)、动物源性EVs(ADEVs)和微生物群源性EVs(MDEVs))调节肠道健康的机制仍存在知识空白。本综述深入探讨了不同来源的 EVs 在调节肠道健康方面的作用和机制,重点关注它们在维持上皮屏障完整性、促进组织愈合、诱发免疫反应、控制病原体和塑造微生物群方面的贡献。我们强调了利用 EVs 调节肠道健康所面临的挑战和未来前景,以便更深入地了解 EVs 的作用和影响。重要的是,我们提出了一个全面的研究框架,以指导未来有关 EVs 对肠道健康的作用和影响的研究,从而促进对这一新兴领域更深刻的理解。
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引用次数: 0
Drought stress mitigation through bioengineering of microbes and crop varieties for sustainable agriculture and food security 通过微生物和作物品种生物工程缓解干旱胁迫,促进可持续农业和粮食安全
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100285
Satish Kumar, Satyavir Singh Sindhu
Climate change and agriculture are intrinsically connected and sudden changes in climatic conditions adversely impact global food production and security. The climate change-linked abiotic stressors like drought and high temperatures are resulting in crop failure. The most severe abiotic stress drought significantly affect the stomatal closure, production of reactive oxygen species, transpiration, photosynthesis or other physiological processes and plant morphology, and adversely affect plant growth and crop yield. Therefore, there is an exigent need for cost effective and eco-friendly modern technologies to induce drought tolerance in crop plants leading to climate-adapted sustainable agricultural practices for sustained food production. Among many options being pursued in this regard, the use of plant growth promoting microbes (PGPMs) is the most sustainable approach to promote drought stress resilience in crop plants leading to better plant growth and crop productivity. These PGPMs confer drought resistance via various direct or indirect mechanisms including production of antioxidants, enzymes, exopolysaccharides, modulation of phytohormones level, osmotic adjustment by inducing the accumulation of sugars, along with increases in nutrients, water uptake and photosynthetic pigments. However, several technological and ecological challenges limit their use in agriculture and sometimes treatment with plant beneficial microbes fails to produce desired results under field conditions. Thus, development of synthetic microbial communities or host mediated microbiome engineering or development of transgenic plants with the capacity to express desired traits may promote plant survival and growth under drought stress conditions. The present review critically assesses research evidence on the plant growth and stress resilience promoting potentials of PGPMs and their genes as an approach to develop drought resilient plants leading to increased crop productivity. Effective collaboration among scientific communities, policymakers and regulatory agencies is needed to create strong frameworks that both promote and regulate the utilization of synthetic microbial communities and transgenic plants in agriculture.
气候变化与农业有着内在的联系,气候条件的突然变化对全球粮食生产和安全造成了不利影响。干旱和高温等与气候变化相关的非生物胁迫导致作物歉收。最严重的非生物胁迫干旱会严重影响气孔关闭、活性氧的产生、蒸腾作用、光合作用或其他生理过程和植物形态,并对植物生长和作物产量产生不利影响。因此,迫切需要成本效益高、生态友好的现代技术来诱导作物植物的耐旱性,从而形成适应气候的可持续农业实践,实现持续的粮食生产。在这方面的众多选择中,使用植物生长促进微生物(PGPMs)是促进作物植物抗旱能力的最可持续的方法,可改善植物生长和提高作物产量。这些植物生长促进微生物通过各种直接或间接机制赋予作物抗旱能力,包括产生抗氧化剂、酶、外多糖、调节植物激素水平、通过诱导糖类积累进行渗透调节,以及增加养分、水分吸收和光合色素。然而,一些技术和生态方面的挑战限制了它们在农业中的应用,有时在田间条件下,用植物有益微生物处理植物并不能产生预期的效果。因此,开发合成微生物群落或宿主介导的微生物组工程,或开发具有表达所需性状能力的转基因植物,可促进植物在干旱胁迫条件下的生存和生长。本综述批判性地评估了有关 PGPMs 及其基因促进植物生长和抗逆潜力的研究证据,以此作为开发抗旱植物的一种方法,从而提高作物产量。科学界、政策制定者和监管机构之间需要开展有效合作,以建立强有力的框架,促进和规范在农业中利用合成微生物群落和转基因植物。
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引用次数: 0
A critical review on the biotechnological potential of Brewers’ waste: Challenges and future alternatives 对酿酒废弃物生物技术潜力的批判性审查:挑战与未来选择
Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100228
Sourav Chattaraj , Debasis Mitra , Arindam Ganguly , Hrudayanath Thatoi , Pradeep K. Das Mohapatra

In order to comply with the stringent discharge guidelines issued by governmental organizations to protect the ecosystem, the substantial amounts of effluent and sturdy wastes produced by the beer brewing process need to be discarded or handled in the most affordable and secure manner. Huge quantities of waste material released with each brew bestow a significant opportunity for the brewing sector to move towards sustainability. The concept of circular economy and the development of technological advancements in brewery waste processing have spurred interest to valorize brewery waste for implementation in various sectors of medical and food science, industrial science, and many more intriguing fields. Biotechnological methods for valorizing brewery wastes are showing a path towards green chemistry and are feasible and advantageous to environment. The study unfolds most recent prospectus for brewery waste usage and discusses major challenges with brewery waste treatment and valorization and offers suggestions for further work.

为了遵守政府组织颁布的保护生态系统的严格排放准则,啤酒酿造过程中产生的大量废水和固体废物需要以最经济、最安全的方式丢弃或处理。每次酿造都会产生大量废料,这为啤酒酿造行业实现可持续发展提供了重要机遇。循环经济的概念和酿酒废弃物处理技术的发展,激发了人们对酿酒废弃物价值化的兴趣,并将其应用于医疗和食品科学、工业科学等多个领域。利用生物技术方法实现酿酒废弃物的有价化为绿色化学提供了一条可行的途径,而且对环境有利。本研究阐述了啤酒厂废物利用的最新前景,讨论了啤酒厂废物处理和价值化的主要挑战,并为进一步的工作提出了建议。
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引用次数: 0
Recovery of filter paperase from mouldy rice husk in solid state fermentation by Aspergillus protuberus 原曲霉固态发酵法从霉变稻壳中回收滤纸酶
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100254
P.Suresh Yadav , B.V.Siva Prasad , M.Subhosh Chandra , M. Srinivasulu , Naga Raju Maddela , Ram Prasad

Recovery of enzymes such as FPase (filter paperase) or exoglucanase from fermented substrate is a sustainable approach in enzyme production; however, there is a scarcity of optimization studies in this field. The present study was aimed to standardize number of parameters (selection of solvent, solvent volume, soaking time, leaching conditions and number of washes) to extract maximum amount of FPase from fermented rice husk by Aspergillus protuberus. Novel Aspergillus protuberus was first report from our lab on cellulases production in solid state fermentation (SSF). Among the tested solvents, citrate phosphate buffer (0.02 M, pH 5.0) proved best solvent for maximum recovery of FPase. Consequent experimental parameters were further optimized with citrate phosphate buffer. Two washes with citrate phosphate buffer each by shaking (60 min) in a ratio of 1 g of rice husk: 5 ml of citrate phosphate buffer together attained higher recovery efficiency (88 %) of FPase from the fermented rice husk.

从发酵基质中回收酶,如FP酶(滤纸酶)或外葡聚糖酶,是一种可持续的酶生产方法;然而,该领域的优化研究很少。本研究旨在对一些参数(溶剂选择、溶剂用量、浸泡时间、浸出条件和洗涤次数)进行标准化,以便通过原曲霉从发酵稻壳中提取出最大量的FP酶。本实验室首次报道了新型原曲霉在固态发酵(SSF)中生产纤维素酶的情况。在测试的溶剂中,柠檬酸磷酸盐缓冲液(0.02 M,pH 值 5.0)被证明是回收最大 FPase 的最佳溶剂。使用柠檬酸磷酸盐缓冲液进一步优化了相应的实验参数。按照 1 克稻壳:5 毫升柠檬酸盐磷酸盐缓冲液的比例,用柠檬酸盐磷酸盐缓冲液振荡洗涤两次(60 分钟),可从发酵稻壳中获得更高的 FPase 回收率(88%)。
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引用次数: 0
Oxidative stress and culture atmosphere effects on bioactive compounds and laccase activity in the white rot fungus Phlebia radiata on birch wood substrate 氧化胁迫和培养气氛对桦木基质上白腐菌 Phlebia radiata 的生物活性化合物和漆酶活性的影响
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100280
Eero Kiviniemi, Arttu Mikkola, Hans Mattila , Matti Wahlsten, Taina Lundell
Wood-decaying white rot fungi live in changing environmental conditions and may switch from aerobic to fermentative metabolism under oxygen depletion. Decomposition of wood and lignocellulose by fungi is dependent on enzymatic and oxidative biochemistry including generation of reactive oxygen species. In this study, we subjected semi-solid wood-substrate cultures of the white rot fungus Phlebia radiata to oxidative stress by addition of hydrogen peroxide under aerobic and anaerobic cultivation conditions. Wood decomposition and fungal metabolism were followed by analysis of extracellular organic compounds, mycelial growth, and laccase activity. Under both atmospheric conditions, accumulation of bioactive aromatic compounds from birch wood occurred into the culture supernatants after hydrogen peroxide treatment. The supernatants inhibited both fungal growth and laccase activity. However, the fungus recovered from the oxidative stress quickly in a few days, especially when cultivated under regular aerobic conditions. With repeated hydrogen peroxide treatments, laccase suppressive-recovery effect was observed. Culture supernatants demonstrated antioxidant and antimicrobial effects, in concert with emergence of chlorinated birch-derived organic compounds. Bioactivities in the cultures disappeared in the same pace as the chlorinated compounds were transformed and de-chlorinated by the fungus. Our results indicate tolerance of white rot fungi against excessive oxidative stress and wood-derived, growth-inhibiting and harmful agents.
木材腐烂白腐真菌生活在不断变化的环境条件中,在氧气耗尽的情况下可能会从有氧代谢转变为发酵代谢。真菌对木材和木质纤维素的分解依赖于酶和氧化生物化学作用,包括活性氧的生成。在这项研究中,我们通过在有氧和无氧培养条件下添加过氧化氢,使白腐真菌 Phlebia radiata 的半固体木材基质培养物受到氧化胁迫。通过分析胞外有机化合物、菌丝生长和漆酶活性,对木材分解和真菌新陈代谢进行了跟踪。在两种大气条件下,过氧化氢处理后的培养上清液中都积累了桦木中的生物活性芳香化合物。上清液抑制了真菌的生长和漆酶活性。不过,真菌很快就能在几天内从氧化压力中恢复过来,尤其是在常规有氧条件下培养时。在重复过氧化氢处理的情况下,可以观察到漆酶的抑制-恢复效应。培养上清液具有抗氧化和抗菌作用,同时还出现了氯化桦木衍生的有机化合物。随着氯化化合物被真菌转化和脱氯,培养物中的生物活性也随之消失。我们的研究结果表明,白腐真菌对过度氧化压力和木材衍生的生长抑制剂和有害物质具有耐受性。
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引用次数: 0
Quorum quenching activity of endophytic Bacillus sp. EBS9 from Tecomella undulata and its biocontrol applications 湍流藻内生芽孢杆菌 EBS9 的法定量淬灭活性及其生物防治应用
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100307
Etisha Paul, Charu Sharma, Payal Chaturvedi, Pradeep Bhatnagar
This study investigates the quorum quenching (QQ) activity of an endophytic bacterium, Bacillus sp. EBS9, isolated from the native medicinal plant Tecomella undulata of Rajasthan, and its biocontrol potential against the soft rot pathogen Pectobacterium carotovorum subsp. carotovorum (Pcc). QQ activity was confirmed by the loss of violacein pigment in Chromobacterium violaceum (MCC 2290). Quorum quenching metabolites were extracted using ethyl acetate, and the Quorum Quenching Extract (QQE) demonstrated positive activity in assays with C. violaceum CV026 (MCC 2216). HRLC-MS analysis identified diketopiperazines, L,L-Cyclo (leucylprolyl) and Cyclo (L-Phe-L-Pro), which are N-acyl homoserine lactones (AHLs) antagonists competing for LuxR receptor binding sites. In vitro and in planta assays evaluated QQB's biocontrol potential using treatment I (Pcc), treatment II (Pcc + QQB), and a control (sterile water). In the in vitro soft rot attenuation assay showed that treatment I caused severe maceration in vegetable slices, particularly in radish, exhibiting the highest maceration diameter (25.33 ± 3.52 mm) and percentage (46.14 ± 5.70 %). However, co-inoculation with QQB significantly reduced maceration across all tested vegetables. In the plate assay, germination rates decreased to approximately 50 % in both Vigna radiata and Raphanus sativus for treatment I, but improved to 86.67 % in treatment II. The seed vigour and germination indices also improved with QQB treatment in both plant species. In the pot assay after 30 days, in contrast to a 50 % decrease in root and shoot lengths in treatment I, treatment II led to a substantial recovery, with root lengths increase by 112.07 % and 138.76 %, while shoot length by 315.65 % and 163.63 % in V. radiata and R. sativus, respectively. This study highlights the QQ and biocontrol potential of Bacillus sp. EBS9 against P. carotovorum (Pcc), suggesting its promise in effective management of phytopathogens, which is crucial for agricultural productivity while minimizing environmental impact.
本研究调查了从拉贾斯坦邦本地药用植物 Tecomella undulata 中分离出的内生细菌芽孢杆菌 EBS9 的法定量淬灭(QQ)活性及其对软腐病病原体 Pectobacterium carotovorum subsp.在 Chromobacterium violaceum(MCC 2290)中,QQ 活性通过其失去的 violacein 色素得到了证实。用乙酸乙酯提取了法定人数淬灭代谢物,在对 C. violaceum CV026(MCC 2216)进行的试验中,法定人数淬灭提取物(QQE)显示出了积极的活性。HRLC-MS 分析确定了二酮哌嗪、L,L-Cyclo(leucylprolyl)和 Cyclo(L-Phe-L-Pro),它们是 N-酰基高丝氨酸内酯(AHLs)拮抗剂,可竞争 LuxR 受体结合位点。体外和植物体内试验使用处理 I(Pcc)、处理 II(Pcc + QQB)和对照(无菌水)评估了 QQB 的生物防治潜力。体外软腐衰减试验表明,处理 I 会导致蔬菜切片严重浸渍,尤其是萝卜,浸渍直径(25.33 ± 3.52 毫米)和浸渍率(46.14 ± 5.70 %)最高。然而,与 QQB 共同接种可显著减少所有测试蔬菜的浸渍。在平板试验中,处理 I 中,Vigna radiata 和 Raphanus sativus 的发芽率均下降到约 50%,但处理 II 中的发芽率提高到 86.67%。这两种植物的种子活力和发芽指数也在 QQB 处理后有所提高。在 30 天后的盆栽试验中,处理 I 的根长和芽长减少了 50%,而处理 II 则大幅恢复,根长分别增加了 112.07% 和 138.76%,芽长分别增加了 315.65% 和 163.63%。这项研究强调了 EBS9 杆菌对 P. carotovorum(Pcc)的 QQ 和生物防治潜力,表明它有望有效管理植物病原体,这对农业生产至关重要,同时也能最大限度地减少对环境的影响。
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引用次数: 0
Insights into population adaptation and biodiversity of lactic acid bacteria in challenged date palm leaves silaging, using MALDI–TOF MS 利用 MALDI-TOF MS 深入了解受挑战枣椰树叶青贮过程中乳酸菌的种群适应性和生物多样性
Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100235
Muhammad Zaid Jawaid, Mohammad Yousaf Ashfaq, Mohammad Al-Ghouti, Nabil Zouari

The study focused on isolating indigenous Qatari lactic acid bacteria (LAB) from various challenged date palm tree leaf silages to construct a comprehensive strain collection, useful to study the diversity of these strains following their adaptation to the uncommon silage. Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI–TOF MS) was employed for strain identification and differentiation. The diversity of LAB populations and strains was assessed through principal component analysis (PCA) and dendrogram analyses. A total of 88 LAB isolates were obtained from silages of fresh palm leaves, silage of mixed leaves and dairy feed, along with fresh palm tree leaves, and dairy feed, adapted to local harsh environments. These isolates were categorized according to the new classification of 2020, belonging to genera of Pediococcus, Lactiplantibacillus plantarum, Lacticaseibacillus paracasei, Companilactobacillus farciminis, Limosilactobacillus oris, Limosilactobacillus vaginalis, Lactiplantibacillus pentosus and Lactobacillus johnsonii. Pediococcus was the most prevalent genus, falling mostly within the species Pediococcus lolii. MALDI–TOF MS protein profiles, PCA, and dendrogram analyses successfully grouped the LAB isolates into five distinctive clusters based on the protein's similarities. The high diversity of the indigenous LAB in spontaneous palm leaf silages demonstrated their adaptation and mutualistic interactions, forming robust consortia that ensure the quality of the silage. The straightforward, quick, and accurate identification of LAB in this silage using MALDI–TOF MS presents a valuable approach for formulating LAB consortia for silaging harsh agricultural by-products.

这项研究的重点是从各种受到挑战的枣椰树叶青贮饲料中分离出卡塔尔本地乳酸菌(LAB),以建立一个全面的菌株收集库,用于研究这些菌株在适应不常见的青贮饲料后的多样性。采用基质辅助激光解吸电离飞行时间质谱法(MALDI-TOF MS)进行菌株鉴定和分化。通过主成分分析(PCA)和树枝图分析评估了 LAB 群体和菌株的多样性。从适应当地恶劣环境的新鲜棕榈叶青贮饲料、混合叶青贮饲料和奶牛饲料中,以及新鲜棕榈树叶和奶牛饲料中,共获得了 88 个 LAB 分离物。根据 2020 年的新分类法对这些分离物进行了分类,分别属于 Pediococcus、Lactiplantibacillus plantarum、Lacticaseibacillus paracasei、Companilactobacillus farciminis、Limosilactobacillus oris、Limosilactobacillus vaginalis、Lactiplantibacillus pentosus 和 Lactobacillus johnsonii 属。Pediococcus是最常见的菌属,主要属于Pediococcus lolii种。根据蛋白质的相似性,MALDI-TOF MS 蛋白图谱、PCA 和树枝图分析成功地将 LAB 分离物分为五个不同的群组。自发棕榈叶青贮饲料中本地酵母菌的高度多样性表明了它们的适应性和互利性相互作用,形成了强大的联合体,确保了青贮饲料的质量。利用 MALDI-TOF MS 直接、快速、准确地鉴定这种青贮饲料中的酵母菌,为配制酵母菌联合体以青贮苛刻的农副产品提供了一种有价值的方法。
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Current Research in Microbial Sciences
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