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Insights into population adaptation and biodiversity of lactic acid bacteria in challenged date palm leaves silaging, using MALDI–TOF MS 利用 MALDI-TOF MS 深入了解受挑战枣椰树叶青贮过程中乳酸菌的种群适应性和生物多样性
Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100235
Muhammad Zaid Jawaid, Mohammad Yousaf Ashfaq, Mohammad Al-Ghouti, Nabil Zouari

The study focused on isolating indigenous Qatari lactic acid bacteria (LAB) from various challenged date palm tree leaf silages to construct a comprehensive strain collection, useful to study the diversity of these strains following their adaptation to the uncommon silage. Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI–TOF MS) was employed for strain identification and differentiation. The diversity of LAB populations and strains was assessed through principal component analysis (PCA) and dendrogram analyses. A total of 88 LAB isolates were obtained from silages of fresh palm leaves, silage of mixed leaves and dairy feed, along with fresh palm tree leaves, and dairy feed, adapted to local harsh environments. These isolates were categorized according to the new classification of 2020, belonging to genera of Pediococcus, Lactiplantibacillus plantarum, Lacticaseibacillus paracasei, Companilactobacillus farciminis, Limosilactobacillus oris, Limosilactobacillus vaginalis, Lactiplantibacillus pentosus and Lactobacillus johnsonii. Pediococcus was the most prevalent genus, falling mostly within the species Pediococcus lolii. MALDI–TOF MS protein profiles, PCA, and dendrogram analyses successfully grouped the LAB isolates into five distinctive clusters based on the protein's similarities. The high diversity of the indigenous LAB in spontaneous palm leaf silages demonstrated their adaptation and mutualistic interactions, forming robust consortia that ensure the quality of the silage. The straightforward, quick, and accurate identification of LAB in this silage using MALDI–TOF MS presents a valuable approach for formulating LAB consortia for silaging harsh agricultural by-products.

这项研究的重点是从各种受到挑战的枣椰树叶青贮饲料中分离出卡塔尔本地乳酸菌(LAB),以建立一个全面的菌株收集库,用于研究这些菌株在适应不常见的青贮饲料后的多样性。采用基质辅助激光解吸电离飞行时间质谱法(MALDI-TOF MS)进行菌株鉴定和分化。通过主成分分析(PCA)和树枝图分析评估了 LAB 群体和菌株的多样性。从适应当地恶劣环境的新鲜棕榈叶青贮饲料、混合叶青贮饲料和奶牛饲料中,以及新鲜棕榈树叶和奶牛饲料中,共获得了 88 个 LAB 分离物。根据 2020 年的新分类法对这些分离物进行了分类,分别属于 Pediococcus、Lactiplantibacillus plantarum、Lacticaseibacillus paracasei、Companilactobacillus farciminis、Limosilactobacillus oris、Limosilactobacillus vaginalis、Lactiplantibacillus pentosus 和 Lactobacillus johnsonii 属。Pediococcus是最常见的菌属,主要属于Pediococcus lolii种。根据蛋白质的相似性,MALDI-TOF MS 蛋白图谱、PCA 和树枝图分析成功地将 LAB 分离物分为五个不同的群组。自发棕榈叶青贮饲料中本地酵母菌的高度多样性表明了它们的适应性和互利性相互作用,形成了强大的联合体,确保了青贮饲料的质量。利用 MALDI-TOF MS 直接、快速、准确地鉴定这种青贮饲料中的酵母菌,为配制酵母菌联合体以青贮苛刻的农副产品提供了一种有价值的方法。
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引用次数: 0
Arbuscular mycorrhizal interaction associated with a botanical garden in the tropics of Mexico 与墨西哥热带植物园有关的丛枝菌根相互作用
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100320
José Alberto Gío-Trujillo, Carlos J. Alvarado-López
Botanical gardens, areas for vegetation conservation, have become important reservoirs of beneficial soil microbiota, mainly as a source of microbial inoculum for agricultural purposes. Shrubby mycorrhizal fungi (AMF), an important genetic resource of tropical soils, have a high potential for agricultural production, generally used as inoculant medium that provides better yield, productivity and physiological response to crops. This research study explores the presence of AMF in a botanical garden, composed of four areas: cactarium collection, epiphytes and ornamental collection, tropical forest area and coastal zone. Each area is composed of plants representative of its ecosystem. For the study, a random systematic model was used, with nine samples per site at a depth of 20 cm. A physicochemical characterization of the soils was developed. The extraction of AMF spores was carried out by wet sieving and centrifugation in 60% sucrose. The spores were identified by taxon. The results indicate a total of 379 AMF spores identified in the study area. The highest spore incidence was recorded in the tropical forest area with a total of 161 (53.67±5.51) spores extracted, followed by the coastal zone and cactus collection area with 78 (26.00±9.64) and 73 (24.33±4.73) spores in total. In the study two taxa were identified, Glomeraceae and Gigasporaceae. The taxon Glomeraceae is also considered to be the most representative (highest abundance and frequency) of the study. In conclusion, botanical gardens, by their extructure (plant composition) and management can be taken into account as important ecosystems reservoirs and source of viable microbial genetic material for the bioprospecting of beneficial soil genotic resources (rhizophiles and endophylls) for use in modern agriculture and sustainable food production systems.
植物园作为植被保护区,已成为有益土壤微生物群的重要宝库,主要作为农业用途的微生物接种体来源。灌木状菌根真菌(AMF)是热带土壤的重要遗传资源,在农业生产中具有很大的潜力,一般用作接种介质,为作物提供更好的产量、生产力和生理反应。这项研究探讨了植物园中的 AMF 存在情况,植物园由四个区域组成:仙人掌收藏区、附生植物和观赏植物收藏区、热带雨林区和沿海地区。每个区域都由代表其生态系统的植物组成。研究采用随机系统模式,每个地点采集 9 个深度为 20 厘米的样本。对土壤进行了物理化学特征描述。通过湿筛和 60% 蔗糖离心提取 AMF 孢子。孢子按分类群进行鉴定。结果表明,在研究地区共鉴定出 379 个 AMF 孢子。热带森林地区的孢子发生率最高,共提取了 161 个(53.67±5.51)孢子,其次是沿海地区和仙人掌采集区,分别提取了 78 个(26.00±9.64)和 73 个(24.33±4.73)孢子。该研究确定了两个类群,即团扇科(Glomeraceae)和巨孢科(Gigasporaceae)。团扇科类群也被认为是本次研究中最具代表性的类群(丰度和频率最高)。总之,植物园通过其外部结构(植物组成)和管理可被视为重要的生态系统库和可行微生物遗传物质的来源,用于生物勘探有益的土壤基因资源(根瘤菌和内生菌),以用于现代农业和可持续食品生产系统。
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引用次数: 0
Brewers’ spent grain as fish feed ingredient: Evaluation of bio-safety and analysis of its impact on gut bacteria of Cirrhinus reba by 16S Metagenomic sequencing 啤酒废谷作为鱼饲料配料:通过 16S 元基因组测序评估生物安全性并分析其对 Cirrhinus reba 肠道细菌的影响
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100286
Sourav Chattaraj , Debasis Mitra , Manasi Chattaraj , Arindam Ganguly , Hrudayanath Thatoi , Pradeep K. Das Mohapatra
A comprehensive eight week feeding trial was conducted to investigate the potential of brewers' spent grain (BSG) as a sustainable fish feed ingredient. The study assessed both the biosafety of BSG and its impact on the gut microbiome of Cirrhinus reba, utilizing advanced 16S metagenomic sequencing techniques to analyze the composition and diversity of gut bacteria. A total of 90 healthy C. reba juveniles (average weight: 12 ± 1 g) were divided into two dietary groups [for control (C), for BSG meal (tB)] in triplicates. Feed prepared with conventional ingredients was used to feed the control group (C). The group tB was fed with BSG meal. After the feeding trial, the fish in tB group showed significantly higher (p < 0.05) growth parameters as compared to the control group. The results of bio-safety assessment indicated the absence of any pathological symptoms in the BSG meal fed carps. The fish in tB group didn't show any histopathological abnormality. Fish fed the Brewers' Spent Grain exhibited significantly elevated serum biochemical parameters, including alanine transaminase (ALT) and aspartate transaminase (AST), compared to the control group (p < 0.05). 16S Metagenomic sequencing of the fish gut microbiota provides insights into how BSG inclusion affects microbial diversity and composition within the digestive tract of C. reba. The analysis revealed the existence of 240 and 250 diverse bacterial genera in the gastrointestinal tract (GIT) of C. reba in dietary groups C and tB respectively. Importantly, the study found the gut of fish in tB group to be dominated by different beneficial genus including Bacillus, Lactobacillus, Bifidobacterium, Paenibacillus, and Lysinibacillus. Feeding C. reba with BSG meal significantly increased the alpha diversity of the gastrointestinal microbiota, as evidenced by elevated Chao 1 estimator and Shannon index values compared to the control diet (p < 0.05). This study provides comprehensive evidence for the bio-safety of BSG as a sustainable feed ingredient in aquaculture, demonstrating its potential to support healthy fish growth and development. Moreover, the prebiotic potential of BSG in fish has also been highlighted.
为了研究啤酒糟(BSG)作为可持续鱼饲料配料的潜力,我们进行了一项为期八周的综合喂养试验。该研究评估了 BSG 的生物安全性及其对 Cirrhinus reba 肠道微生物组的影响,利用先进的 16S 元基因组测序技术分析了肠道细菌的组成和多样性。将总共 90 尾健康的 Cirrhinus reba 幼鱼(平均体重:12 ± 1 克)分为两个饮食组[对照组(C)、BSG 餐组(tB)],每组三份。对照组(C)使用传统原料配制的饲料。tB 组喂食 BSG 粉。投喂试验后,tB 组鱼的生长参数明显高于对照组(p < 0.05)。生物安全评估结果表明,投喂 BSG 粉的鲤鱼没有出现任何病理症状。tB 组的鱼没有出现任何组织病理学异常。与对照组相比,喂食啤酒糟渣的鱼血清生化指标(包括丙氨酸转氨酶(ALT)和天门冬氨酸转氨酶(AST))明显升高(p < 0.05)。对鱼类肠道微生物群进行 16S 元基因组测序,有助于深入了解 BSG 如何影响 C. reba 消化道内的微生物多样性和组成。分析结果显示,在 C 组和 tB 组中,C. reba 的胃肠道(GIT)中分别存在 240 和 250 个不同的细菌属。重要的是,研究发现 tB 组鱼类的肠道中主要存在不同的有益菌属,包括芽孢杆菌、乳酸杆菌、双歧杆菌、白杆菌和赖氏菌。与对照组相比,用 BSG 粉饲喂 C. reba 能显著提高胃肠道微生物群的α多样性,这体现在 Chao 1 估计值和香农指数值的升高上(p <0.05)。这项研究为 BSG 作为可持续饲料配料在水产养殖中的生物安全性提供了全面证据,证明了其支持鱼类健康生长和发育的潜力。此外,BSG 在鱼类中的益生元潜力也得到了强调。
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引用次数: 0
Unraveling growth-promoting potential of plant beneficial actinobacteria on tropical bryophytes 揭示植物有益放线菌对热带红叶植物的生长促进潜力
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100284
Mathurin Meethangdee , Wasu Pathom-aree
Bryophytes are non-vascular plants with dominant gametophyte stage that play vital ecological roles in natural ecosystems. Unfortunately, their populations are currently in decline due to habitat destruction and various anthropogenic activities. The conservation efforts for bryophytes are hampered by their slow growth rates. This study aims to investigate the potential of actinobacteria to promote the growth of bryophytes. In this study, three plant growth-promoting actinobacteria, Dermacoccus abyssi MT1.1T, Micromonospora chalcea CMU55-4 and Streptomyces thermocarboxydus S3 were cultured in International Streptomyces Project medium 2 (ISP2) broth to obtain culture filtrates containing bioactive compounds for enhancing the growth of two bryophyte species, Physcomotrium sphaericum (C. Ludw.) Fürnr and Sphagnum cuspidatulum C. Müll. Interestingly, the incorporation of actinobacterial culture filtrates into 1/16 Murashige and Skoog (MS) medium yielded superior growth performance of P. sphaericum (C. Ludw.) Fürnr and S. cuspidatulum C. Müll, as observed from the thallus height, fresh weight, total chlorophyll contents, and total carotenoid contents compared to control groups. In addition, the inoculation of M. chalcea CMU55-4 on S. cuspidatulum C. Müll grown in sterile peat moss demonstrated the highest values for thallus height, fresh weight, dry weight, total chlorophyll content, and total carotenoid content. All actinobacteria successfully colonized the moss seedlings without any observable negative impacts, indicating beneficial interactions between actinobacteria and bryophytes. This research sheds light on the potential of harnessing plant beneficial actinobacteria to enhance the growth of bryophytes for conservation purposes.
毛藓植物是具有显性配子体阶段的非维管束植物,在自然生态系统中发挥着重要的生态作用。不幸的是,由于栖息地遭到破坏和各种人为活动,它们的数量目前正在下降。由于其生长速度缓慢,阻碍了对红叶植物的保护工作。本研究旨在探讨放线菌促进红叶植物生长的潜力。在本研究中,三种促进植物生长的放线菌(Dermacoccus abyssi MT1.1T、Micromonospora chalcea CMU55-4 和 Streptomyces thermocarboxydus S3 在国际链霉菌项目培养基 2(ISP2)肉汤中培养,获得含有生物活性化合物的培养滤液,用于促进两种红叶植物 Physcomotrium sphaericum (C. Ludw.) Fürnr 和 Sphagnum cuspidatulum C. Müll 的生长。有趣的是,在 1/16 Murashige and Skoog(MS)培养基中加入放线菌培养滤液后,P. sphaericum (C. Ludw.) Fürnr 和 S. cuspidatulum C. Müll的生长表现优于对照组,这一点可以从它们的植株高度、鲜重、叶绿素总含量和类胡萝卜素总含量中观察到。此外,将 M. chalcea CMU55-4 接种到生长在无菌泥炭藓中的 S. cuspidatulum C. Müll,结果表明其叶柄高度、鲜重、干重、叶绿素总含量和类胡萝卜素总含量均为最高值。所有放线菌都成功地在苔藓幼苗上定植,没有发现任何负面影响,这表明放线菌与红叶植物之间存在有益的相互作用。这项研究揭示了利用对植物有益的放线菌促进红叶植物生长以达到保护目的的潜力。
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引用次数: 0
Streptolysin S induces proinflammatory cytokine expression in calcium ion-influx-dependent manner 链霉素 S 以钙离子流入依赖性方式诱导促炎细胞因子的表达
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100265
Yugo Yamamori , Rina Shirai , Kazuto Ohkura , Hideaki Nagamune , Toshifumi Tomoyasu , Atsushi Tabata

Anginosus group streptococci (AGS) are opportunistic pathogens that reside in the human oral cavity. The β-hemolytic strains of Streptococcus anginosus subsp. anginosus (SAA) produce streptolysin S (SLS), a streptococcal peptide hemolysin. In recent clinical scenarios, AGS, including this species, have frequently been isolated from infections and disorders beyond those in the oral cavity. Consequently, investigating this situation will reveal the potential pathogenicity of AGS to ectopic infections in humans. However, the precise mechanism underlying the cellular response induced by secreted SLS and its relevance to the pathogenicity of AGS strains remain largely unknown. This study aims to elucidate the mechanism underlying the host cellular response of the human acute monocytic leukemia cell line THP-1 to secreted SLS. In THP-1 cells incubated with the culture supernatant of β-hemolytic SAA containing SLS as the sole cytotoxic factor, increased Ca2+ influx and elevated expression of proinflammatory cytokines were observed. Significantly reduced expression of SLS-dependent upregulated cytokine genes under Ca2+-chelating conditions suggests that Ca2+ influx triggers SLS-dependent cellular responses. Furthermore, SLS-dependent enhanced expression of IL-8 was also implicated in the activation of extracellular signal-regulated kinase (ERK) and p38 mitogen-activated protein kinase (MAPK) signaling pathways. The findings presented in this study are crucial for a comprehensive understanding of the real pathogenicity of SLS-producing β-hemolytic AGS in the latest clinical situations.

安吉诺斯群链球菌(AGS)是存在于人类口腔中的机会性病原体。安吉诺斯氏链球菌亚种(SAA)的 β 溶血菌株可产生链球菌肽溶血素 S(SLS)。在最近的临床病例中,经常从口腔以外的感染和疾病中分离出 AGS,包括该物种。因此,对这种情况的研究将揭示 AGS 对人类异位感染的潜在致病性。然而,分泌型 SLS 诱导细胞反应的确切机制及其与 AGS 菌株致病性的相关性在很大程度上仍不为人所知。本研究旨在阐明人类急性单核细胞白血病细胞系 THP-1 对分泌型 SLS 的宿主细胞反应机制。在用含有 SLS 作为唯一细胞毒性因子的 β 溶血 SAA 培养上清液培养 THP-1 细胞时,观察到 Ca2+ 流入增加和促炎细胞因子表达升高。在 Ca2+ 螯合条件下,SLS 依赖性上调细胞因子基因的表达明显减少,这表明 Ca2+ 流入会引发 SLS 依赖性细胞反应。此外,SLS 依赖性 IL-8 表达的增强还与细胞外信号调节激酶(ERK)和 p38 丝裂原活化蛋白激酶(MAPK)信号通路的激活有关。本研究的发现对于全面了解最新临床情况下产生 SLS 的β溶血性 AGS 的真正致病性至关重要。
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引用次数: 0
Valorisation of raw mango pickle industry waste into antimicrobial agent against postharvest fungal pathogens 将生芒果腌制工业废料转化为抗采后真菌病原体的抗菌剂
Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100243
Gouthami Shivaswamy , Shalini Gaur Rudra , Lham Dorjee , Aditi Kundu , Robin Gogoi , Anupama Singh

In mango pickle industry, a significant quantity of mango seed kernels is discarded as solid wastes. These seed kernels can be an ideal source for obtaining extracts rich in bioactive polyphenolic compounds with good antioxidant properties. The potential of mango kernel phenolic extract (MKPE) was investigated as a natural and effective antimicrobial agent for controlling major postharvest fungal pathogen infections, a significant threat to global food supply chains. Fungal pathogens contribute to the deterioration of fruits, vegetables, and grains during storage and transportation, leading to economic losses and compromised food safety. MKPE was obtained from pickling variety 'Ramkela' raw mango kernels, and its phenolic composition was characterized using LC–MS. The in vitro antifungal activity of MKPE against Botrytis cinerea, Colletotrichum gloeosporoides, and Rhizopus stolonifer was evaluated in vitro. A concentration-dependent inhibition of fungal radial growth against all three pathogens was observed, exhibiting the potential of MKPE as a valuable natural resource for addressing postharvest losses caused by fungal pathogens. The extraction process yielded a total phenolic content of 2128 mg GAE/100 g. Major polyphenolic bioactive compounds present were mangiferin, quercetin, and rhamnetin. The in-vitro antimicrobial assay showed reduction in the radial growth and inhibition percent of the pathogens. EC50 values of MKPE for B. cineria, C. gloeosporoides, and R. stolonifer was found to 364.17, 963.8 and 926 ppm, respectively. Our results demonstrate an economical, sustainable, and eco-friendly approach to manage post-harvest diseases rendered by fungi using mango MKPE from pickling industry waste.

在芒果腌制业中,大量的芒果籽核作为固体废物被丢弃。这些种仁是获得富含生物活性多酚化合物、具有良好抗氧化性的提取物的理想来源。芒果核酚类提取物(MKPE)是一种天然有效的抗菌剂,可用于控制收获后的主要真菌病原体感染。真菌病原体会导致水果、蔬菜和谷物在贮藏和运输过程中变质,从而造成经济损失并危及食品安全。从腌制品种 "Ramkela "生芒果核中获得了 MKPE,并使用 LC-MS 对其酚类成分进行了表征。在体外评估了 MKPE 对灰霉病菌、球孢子菌和匍匐茎根瘤菌的抗真菌活性。结果表明,MKPE 对所有三种病原体的真菌径向生长都有浓度依赖性抑制作用,表明 MKPE 有潜力成为一种宝贵的自然资源,用于解决真菌病原体造成的采后损失问题。萃取过程中产生的总酚含量为 2128 毫克 GAE/100 克,其中主要的多酚生物活性化合物是芒果苷、槲皮素和鼠李素。体外抗菌试验显示,病原体的径向生长和抑制率均有所下降。发现 MKPE 对 B. cineria、C. gloeosporoides 和 R. stolonifer 的 EC50 值分别为 364.17、963.8 和 926 ppm。我们的研究结果表明,利用腌制业废料中的芒果 MKPE 来管理由真菌引起的收获后病害,是一种经济、可持续和环保的方法。
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引用次数: 0
Production of biodegradable food packaging from mango peel via enzymatic hydrolysis and polyhydroxyalkanoates synthesis: A review on microbial intervention 通过酶水解和聚羟基烷酸合成从芒果皮中生产可生物降解的食品包装:微生物干预综述
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100292
Vinay Kumar Pandey , Zaryab Shafi , Anjali Tripathi , Gurmeet Singh , Rahul Singh , Sarvesh Rustagi
The rising environmental problem of plastic packaging waste has led to the development of sustainable alternatives, particularly for food packaging. Polyhydroxyalkanoates (PHAs) are biodegradable, thermoplastic polyesters. They are employed in the production of various products, including packaging films. The bio-based nature and appropriate features of PHAs, similar to conventional synthetic plastics, have garnered significant attention from researchers and industries. The current study aimed to produce biodegradable food packaging using mango peel (a major agricultural waste) with enzymatic hydrolysis and PHAs synthesis. Mango peel is the hub for macro-and micronutrients, including phytochemicals. The process includes an enzymatic hydrolysis step that converts complex carbohydrates into simple sugars using mango peel as a substrate. The produced sugars are used as raw materials for bacteria to synthesize PHAs, which are a class of biodegradable polymers produced by these microorganisms that can serve as packaging materials in the food industry. To solve environmental problems and increase the utilization of agricultural by-products, this review presents a practical method for producing food packaging that is environmentally friendly.
塑料包装废弃物这一日益严重的环境问题促使人们开发可持续的替代品,尤其是用于食品包装的替代品。聚羟基烷酸酯(PHA)是一种可生物降解的热塑性聚酯。它们可用于生产各种产品,包括包装膜。PHAs 与传统合成塑料类似,具有生物基性质和适当的特性,因此受到研究人员和工业界的极大关注。本研究旨在利用芒果皮(一种主要农业废弃物),通过酶水解和 PHAs 合成,生产可生物降解的食品包装。芒果皮是包括植物化学物质在内的宏量和微量营养素的中心。该工艺包括酶水解步骤,以芒果皮为底物,将复杂碳水化合物转化为单糖。产生的糖类可作为细菌合成 PHAs 的原料,而 PHAs 是由这些微生物产生的一类可生物降解的聚合物,可作为食品工业的包装材料。为了解决环境问题和提高农副产品的利用率,本综述介绍了一种生产环保型食品包装的实用方法。
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引用次数: 0
Screening of Novel Drug Targets and Drug Design for Bordetella pertussis: A Subtractive Proteomics Approach 针对百日咳博德特氏菌的新型药物靶点筛选和药物设计:减法蛋白质组学方法
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100291
Md. Nazmul Islam Bappy , Foeaz Ahmed , Tahera Lasker , Emran Hossain Sajib , Md. Shariful Islam
Bordetella pertussis causes whooping cough in humans that spreads directly from individual to individual mainly by aerosolized respiratory droplets. Nowadays, it gained the attention of scientific community because it has already been reemerged as one of the major public health threats despite widespread vaccination efforts. Moreover, the growing antibiotic resistance has made it difficult to combat this pathogen with currently available antibiotics. Consequently, screening drug targets and discovering drugs against unique proteins of the pathogen could be a promising alternative. With this view, 3,359 proteins of B. pertussis were screened in silico to identify non-duplicate proteins crucial for survival of the bacteria, non-homologous to humans, involved in unique metabolic pathways of the pathogen, and conserved among various bacterial strains. Among these, Chemotaxis protein Mota, Chromosomal replication initiator protein DnaA, Short-chain fatty acids transporter, [protein-PII] uridylyltransferase, Type III secretion protein V, Potassium-transporting ATPase potassium-binding subunit, N-acetylmuramoyl-L-alanine amidase, and RNA polymerase sigma-54 factor fulfilled these criteria. These proteins were further analyzed for qualitative characteristics such as virulence properties and associations with antibiotic resistance, etc. In addition, plant metabolites were screened against these unique proteins utilizing molecular docking to discover putative drugs against them. Four metabolites exhibited superior binding affinity and favorable ADME (Adsorption, distribution, metabolism, and excretion) properties which can further be tested in vivo.
百日咳杆菌会引起人类百日咳,主要通过呼吸道飞沫在人与人之间直接传播。如今,尽管疫苗接种工作广泛开展,但百日咳已成为威胁公共健康的主要病原体之一,因此受到科学界的关注。此外,由于抗生素耐药性的不断增加,目前可用的抗生素已很难对付这种病原体。因此,筛选药物靶点和发现针对该病原体独特蛋白质的药物不失为一种有前途的替代方法。有鉴于此,我们对百日咳杆菌的 3,359 个蛋白质进行了硅学筛选,以确定对细菌生存至关重要的、与人类非同源的、参与病原体独特代谢途径的、在不同细菌菌株中保守的非重复蛋白质。其中,趋化蛋白 Mota、染色体复制启动蛋白 DnaA、短链脂肪酸转运体、[蛋白-PII] 尿苷酸基转移酶、III 型分泌蛋白 V、钾转运 ATP 酶钾结合亚基、N-乙酰基木糖醇酰-L-丙氨酸酰胺酶和 RNA 聚合酶 sigma-54 因子符合这些标准。对这些蛋白质进行了进一步的定性分析,如毒力特性、与抗生素耐药性的关系等。此外,还利用分子对接技术针对这些独特的蛋白质筛选了植物代谢物,以发现针对这些蛋白质的潜在药物。四种代谢物表现出卓越的结合亲和力和良好的 ADME(吸附、分布、代谢和排泄)特性,可进一步在体内进行测试。
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引用次数: 0
Characterization of the oral mycobiome of Portuguese with allergic rhinitis and asthma 葡萄牙过敏性鼻炎和哮喘患者的口腔真菌生物群特征
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100300
Marcos Pérez-Losada , Eduardo Castro-Nallar , Jenaro García-Huidobro , José Laerte Boechat , Luis Delgado , Tiago Azenha Rama , Manuela Oliveira
Allergic rhinitis and asthma are two prevailing chronic airway diseases and serious public health concerns. Previous research has already described the role of the airway bacteriome in these two diseases, but almost no study so far has explored the mycobiome and its possible association to airway inflammation. Here we sequenced the internal transcribed spacers (ITS) 1 and 2 to characterize the oral mycobiome of 349 Portuguese children and young adults with allergic rhinitis alone (AR) or with asthma (ARAS), asthmatics (AS) and healthy controls (HC). Our genomic analyses showed that the two most abundant fungal phyla (Ascomycota and Basidiomycota) and 3–5 of the 14 most abundant fungal genera (Cladosporium, Aspergillus, Aleurina, Candida and Rhodotorula) in the mouth differed significantly (P ≤ 0.04) between both rhinitic groups and HC. However, none of the same taxa varied significantly between the three respiratory disease groups (AR, ARAS and AS). The oral mycobiomes of respiratory ill patients showed the highest intra-group diversity (microbial richness and evenness), while HC showed the lowest, with all alpha-diversity indices varying significantly (P ≤ 0.0424) between them. Similarly, all disease groups showed significant differences (P ≤ 0.0052) in microbial structure (i.e., beta-diversity indices) when compared to HC samples. Thirty metabolic pathways (PICRUSt2) were differentially abundant (Wald's test) between AR or ARAS and HC patients, but only one of them (D-galactose degradation I) was over abundant (log2 Fold Change >0.75) in the ARAS group. Spiec-Easi fungal networks varied greatly among groups, which suggests chronic respiratory allergic diseases may alter fungal connectivity in the mouth. This study increases our comprehension of the role of the oral mycobiome in allergy-related conditions. It shows for the first time that the oral mycobiota changes during health and allergic rhinitis (with and without asthma comorbidity) and highlights specific taxa, metabolic pathways and fungal interactions that may relate to chronic airway disease.
过敏性鼻炎和哮喘是两种常见的慢性气道疾病,也是严重的公共卫生问题。以前的研究已经描述了气道细菌组在这两种疾病中的作用,但迄今为止几乎还没有研究探讨过霉菌生物组及其与气道炎症的可能关联。在这里,我们对内部转录间隔(ITS)1 和 2 进行了测序,以描述 349 名患有单纯过敏性鼻炎(AR)或哮喘(ARAS)、哮喘患者(AS)和健康对照组(HC)的葡萄牙儿童和年轻人的口腔真菌生物群的特征。我们的基因组分析表明,口腔中含量最高的两个真菌门(子囊菌门和担子菌门)和 14 个含量最高的真菌属(Cladosporium、Aspergillus、Aleurina、Candida 和 Rhodotorula)中的 3-5 个(Cladosporium、Aspergillus、Aleurina、Candida 和 Rhodotorula)在鼻炎组和健康对照组之间存在显著差异(P ≤ 0.04)。然而,在三个呼吸道疾病组(AR、ARAS 和 AS)之间,相同的类群均无明显差异。呼吸道疾病患者的口腔真菌生物群显示出最高的组内多样性(微生物丰富度和均匀度),而 HC 显示出最低的组内多样性,它们之间的所有α-多样性指数均有显著差异(P ≤ 0.0424)。同样,与 HC 样品相比,所有疾病组的微生物结构(即贝塔多样性指数)都有显著差异(P ≤ 0.0052)。AR或ARAS患者与HC患者之间有30种代谢途径(PICRUSt2)的含量存在差异(沃尔德检验),但其中只有一种途径(D-半乳糖降解I)在ARAS组中含量过高(log2折叠变化>0.75)。各组之间的 Spiec-Easi 真菌网络差异很大,这表明慢性呼吸道过敏性疾病可能会改变口腔中的真菌连通性。这项研究加深了我们对口腔真菌生物群在过敏相关疾病中的作用的理解。它首次显示了口腔真菌生物群在健康和过敏性鼻炎(合并或不合并哮喘)期间的变化,并强调了可能与慢性气道疾病相关的特定类群、代谢途径和真菌相互作用。
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引用次数: 0
Diagnosis of extraintestinal pathogenic Escherichia coli pathogenesis in urinary tract infection 尿路感染中肠道外致病性大肠埃希菌发病机制的诊断
IF 4.8 Q1 MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crmicr.2024.100296
Deenadayalan Karaiyagowder Govindarajan , Biniam Moges Eskeziyaw , Kumaravel Kandaswamy , Degisew Yinur Mengistu
Extra-intestinal pathogenic Escherichia coli (ExPEC) is a virulent pathogen found in humans that causes the majority of urinary tract infections, and other infections such as meningitis and sepsis. ExPEC can enter the urinary tract through two modes: ascending from the bladder or descending from the kidneys. Human anatomical structures generally prevent the transmission of pathogens between the extra-intestinal area, kidneys, bladder, and urinary tract. However, adhesins, a virulence protein of ExPEC, promote the initial bacterial attachment and invasion of host cells. In addition to adhesion proteins, ExPEC contains iron acquisition systems and toxins to evade the host immune system, acquire essential nutrients, and gain antibiotic resistance. The presence of antibiotic-resistant genes makes treating ExPEC in urinary tract infections (UTIs) more complicated. Therefore, screening for the presence of ExPEC among other uropathogens in UTI patients is essential, as it can potentially aid in the effective treatment and mitigation of ExPEC pathogens. Several diagnostic techniques are available for detecting ExPEC, including urine culture, polymerase chain reaction, serological testing, loop-mediated isothermal amplification, and biochemical tests. This review addresses strain-specific diagnostic techniques for screening ExPEC in UTI patients.
肠道外致病性大肠埃希菌(ExPEC)是一种在人类中发现的烈性病原体,可引起大多数泌尿道感染以及脑膜炎和败血症等其他感染。ExPEC 可通过两种方式进入泌尿道:从膀胱上升或从肾脏下降。人体解剖结构通常会阻止病原体在肠外、肾脏、膀胱和泌尿道之间传播。然而,粘附蛋白是 ExPEC 的毒力蛋白,可促进细菌最初附着和侵入宿主细胞。除粘附蛋白外,ExPEC 还含有铁获取系统和毒素,以躲避宿主免疫系统、获取必需营养并获得抗生素耐药性。抗生素耐药基因的存在使得治疗尿路感染(UTI)中的 ExPEC 变得更加复杂。因此,在尿路感染患者中筛查 ExPEC 和其他尿路病原体至关重要,因为这可能有助于有效治疗和减少 ExPEC 病原体的感染。目前有多种诊断技术可用于检测 ExPEC,包括尿培养、聚合酶链反应、血清学检测、环介导等温扩增和生化检测。本综述探讨了用于筛查UTI 患者 ExPEC 的菌株特异性诊断技术。
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引用次数: 0
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Current Research in Microbial Sciences
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