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Proceedings of the IX International Congress on Biotechnology SOCIBI, III Meeting of Students and Alumni of the CICB-UATx 第九届国际生物技术大会论文集
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-16 DOI: 10.29267/mxjb.2023.8.1.96
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引用次数: 0
Effect of particle size, aeration, and substrate height on the production of lignocellulolytic enzymes produced by Trametes polyzona HHM001 grown on corn leaf residues. 粒径、通气和基质高度对玉米叶渣上生长的多带Trametes polyzona HHM001产生木质纤维素水解酶的影响。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-03 DOI: 10.29267/mxjb.2023.8.1.66
Y. García-Esquivel, Y. Mercado-Flores, Miguel Angel Anducho- Reyes, A. Téllez-Jurado
The objective of the work was to evaluate the production of lignocllulolytic enzymes produced by Trametes polyzona HHM001 during its growth on corn leaf residues. Two particle sizes (PS) (PS8 and PS12), two levels of aeration (1 vvm and 0 vvm), as well as the height of the substrate in the production of lignocellulolytic enzymes were tested. The enzymatic activities of Laccase (Lcc), Lignin peroxidase (LiP), and Manganese peroxidase (MnP) were favored under aerated conditions (1 vvm). The enzymatic activity of Lcc was the most favored, with 80 Activity Units (AU)/mL, compared to the culture without aeration, in which 40 AU/mL was obtained. The production of xylanases (Xyl) and cellulases (Cel) were not influenced by aeration under the tested conditions. The results indicated that the particle size has more effect on enzyme production than the presence or absence of air, with a particle size of 8 where the best levels of enzymatic activity were observed. It was observed that the height of the substrate in the fermentation column strongly affects the activity of ligninolytic enzymes and not of the hydrolytic; at 5 cm, the highest ligninolytic activity was detected, where aeration favors oxidative conditions.
本工作的目的是评估多带Trametes polyzona HHM001在玉米叶渣上生长过程中产生的木质纤维素水解酶的产量。测试了两种粒度(PS)(PS8和PS12)、两种通气水平(1vvm和0vvm)以及木质纤维素水解酶生产中基质的高度。漆酶(Lcc)、木质素过氧化物酶(LiP)和锰过氧化物酶(MnP)的酶活性在充气条件下(1vvm)是有利的。与未曝气的培养物相比,Lcc的酶活性是最有利的,具有80个活性单位(AU)/mL,其中获得40AU/mL。在测试条件下,木聚糖酶(Xyl)和纤维素酶(Cel)的产生不受通气的影响。结果表明,与存在或不存在空气相比,颗粒大小对酶产生的影响更大,其中观察到最佳酶活性水平的颗粒大小为8。结果表明,底物在发酵柱中的高度强烈影响木质素水解酶的活性,而不影响水解酶的活性;在5cm处,检测到最高的木质素分解活性,其中通气有利于氧化条件。
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引用次数: 0
Screening of anti-urease and antibacterial activities of root extract from Cylindropuntia cholla 紫檀根提取物抗脲酶活性及抗菌活性的筛选
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-03 DOI: 10.29267/mxjb.2023.8.1.86
J. A. Núñez-Gastélum, Gabriela Vera-García, Á. Díaz-Sánchez
In this study, the root extract of Cylindropuntia cholla was analyzed as a possible source of substances with potential urease inhibitory and antibacterial activity. C. cholla cactus are abundant in the arid regions of Mexico and are traditionally used to treat kidney diseases, urinary tract infections, and in some cases, to combat the formation of kidney stones. Anti-urease action was evaluated from methanolic root extracts by initial velocity methods. We observed an IC50 of 2.04 mg/mL. Lineweaver-Burk pattern showed an uncompetitive inhibition. The antibacterial activity was evaluated over Klebsiella pneumoniae (ATCCTM 13883) and Staphylococcus aureus (ATCCTM 25923) and we only observed effects over S. aureus growth at 200 mg/mL of extract concentration.
本研究分析了圆柱菊根提取物可能具有抑制脲酶和抗菌活性的物质来源。墨西哥干旱地区盛产仙人掌,传统上用于治疗肾脏疾病、尿路感染,在某些情况下,还用于对抗肾结石的形成。用初速度法评价甲醇根提取物的抗脲酶作用。我们观察到IC50为2.04 mg/mL。linewever - burk模式显示非竞争性抑制。对肺炎克雷伯菌(ATCCTM 13883)和金黄色葡萄球菌(ATCCTM 25923)的抑菌活性进行了评价,仅在200 mg/mL提取物浓度下观察到对金黄色葡萄球菌生长的影响。
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引用次数: 0
Antibacterial behavior and bacterial resistance analysis of P. aeruginosa in contact with copper nanoparticles 铜绿假单胞菌与铜纳米粒子接触的抗菌行为及耐药性分析
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-03 DOI: 10.29267/mxjb.2023.8.1.1
Karen Guadalupe Quintero-Garrido, F. Ramírez-Montiel, M. Chávez-Castillo, Y. Reyes-Vidal, F. J. Bacame-Valenzuela, F. Padilla‐Vaca, L. Palma-Tirado, M. Estevez, B. L. España Sánchez
The present study describes the antibacterial behavior and the bacterial resistance analysis of extremophile Pseudomonas aeruginosa in contact with copper nanoparticles (CuNPs). For this purpose, green synthesis of CuNPs was performed by combined ultrasound-assisted and chemical reduction methods, obtaining semispherical CuNPs ranging from ca. 4-9 nm. Antibacterial activity (AA) of biosynthesized CuNPs demonstrates an antibacterial inhibition of 85 % (LD85) at 400 μg/mL and a minimum bactericidal concentration (MBC) of 800 μg/mL after 3 h of contact. Bacterial adaptation in contact with CuNPs was observed through the consecutive exposition of microorganisms, presenting a significant increase of LD85 values from 400 μg/mL to 6400 μg/mL after 11 expositions. This behavior demonstrates the bacterial growth adaptation with high-dose of CuNPs. The bacterial resistance mechanism was determined through the overproduction of pyocyanin, associated with oxidative stress events, the genomic polymorphism of resistant bacteria obtained by PCR-RAPDs, and the morphological interaction between P. aeruginosa and CuNPs evidenced by transmission electron microscopy (TEM) micrographs. Our results suggest that under controlled CuNPs exposition, extremophile P. aeruginosa can generate bacterial resistance mechanisms, an important issue for the effective design of antimicrobial nanomaterials.
本研究描述了极端微生物铜绿假单胞菌与铜纳米粒子(CuNPs)接触的抗菌行为和细菌耐药性分析。为此,通过超声辅助和化学还原相结合的方法进行CuNPs的绿色合成,获得约4-9nm范围内的半球形CuNPs。生物合成的CuNPs的抗菌活性(AA)在400μg/mL时表现出85%的抗菌抑制作用(LD85),接触3小时后的最低杀菌浓度(MBC)为800μg/mL。通过连续暴露微生物观察到与CuNPs接触的细菌适应,在11次暴露后,LD85值从400μg/mL显著增加到6400μg/mL。这种行为证明了高剂量CuNPs对细菌生长的适应性。细菌耐药性机制是通过与氧化应激事件相关的脓青蛋白的过量产生、通过PCR-RAPD获得的耐药性细菌的基因组多态性以及通过透射电子显微镜(TEM)显微照片证明的铜绿假单胞菌和CuNPs之间的形态相互作用来确定的。我们的研究结果表明,在受控的CuNPs暴露下,极端微生物铜绿假单胞菌可以产生细菌耐药性机制,这是有效设计抗菌纳米材料的一个重要问题。
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引用次数: 1
Greenhouse lettuce production fertilized with sargassum extract or vermicompost leachate 温室生菜生产施肥马尾藻提取物或蚯蚓堆肥渗滤液
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-03 DOI: 10.29267/mxjb.2023.8.1.21
A. P. Juárez-Rangel, A. Solís-Oba, R. M. Martínez-Cásares, R. Castro-Rivera, M. Solís-Oba
The presence of sargassum on the Caribbean coast causes ecological problems, as does the sludge from water treatment plants. Fertilizers like Nutrkam (sargassum extract) and Biofertex (leachate from the vermicomposting of sludge from a textile plant) have been prepared from these two materials. Both biostimulants were applied to a lettuce crop in a greenhouse, the doses were 2, 5, 7.5, 10 and 20% by volume, the results were compared with urea fertilization. At eight weeks, height, number of green leaves and senescent leaves, fresh and dry weight, antioxidant capacity, and flavonoid content were evaluated. With NutrKam at 5, 10 and 20% and Biofertex at 7.5, 10 and 20%, the height of the leaves was statistically equal to that obtained with urea; there was no significant difference in the weight of leaves when fertilizing with 20% NutrKam, 7.5% Biofertex and urea. With all the treatments, except with Biofertex at 10 %, the antioxidant content was higher than that of lettuces fertilized with urea. The use of both materials to prepare fertilizers is an attractive alternative, since on the one hand the pollution caused by their inadequate disposal is reduced, and on the other, their agricultural application would help reduce the use of chemical fertilizers, without impairing the yield and crop properties.
马尾藻在加勒比海海岸的存在造成了生态问题,水处理厂的污泥也是如此。已经用这两种材料制备了Nurkam(马尾藻提取物)和Biofertex(纺织厂污泥蚯蚓堆肥的渗滤液)等肥料。将这两种生物刺激剂分别应用于温室中的生菜作物,剂量分别为体积的2%、5%、7.5%、10%和20%,并将结果与尿素施肥进行了比较。在八周时,对身高、绿叶和衰老叶的数量、鲜重和干重、抗氧化能力和类黄酮含量进行了评估。在NutrKam为5%、10%和20%,Biofertex为7.5%、10%和20%时,叶片高度在统计学上与尿素相同;施用20%NutrKam、7.5%Biofertex和尿素时,叶片重量没有显著差异。除10%的Biofertex处理外,所有处理的抗氧化物含量均高于尿素处理。使用这两种材料来制备肥料是一种有吸引力的替代方案,因为一方面可以减少因处理不当而造成的污染,另一方面,它们的农业应用将有助于减少化肥的使用,而不会损害产量和作物特性。
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引用次数: 0
Extraction and characterization of a biosurfactant synthesized by Acinotebacter baumannii 鲍曼不动杆菌合成的生物表面活性剂的提取与表征
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-03 DOI: 10.29267/mxjb.2023.8.1.37
Rubicel Torres-Custodio, M. A. Hernández-Rivera, J. S. López-Lázaro, Y. Córdova-Bautista, J. Alvarez-Ramirez, P. Sifuentes-Gallardo, M. E. Ojeda-Morales
Biosurfactants are metabolites produced by microorganisms during their growth and reproduction. They are amphiphilic molecules capable of modifying surface and interfacial tension. A petrophilic, nitrogen-fixing, phosphorus-solubilizing, and biosurfactant-producing bacterial strain was isolated and characterized. The isolated strain was cultivated in Kim medium with a C:N ratio of 2:1, from which its growth kinetics was determined. Samples of the culture broth were taken at different times and the collapsed drop, oil dispersion and emulsification index tests were performed. Maximum culture growth occurred at 72 h. The biosurfactant was extracted from the crude cell-free broth using a mixture of solvents and a yield of 2.21 g/L was obtained. Thin-layer chromatography and FT-IR analyzes revealed the presence of a lipopeptide biosurfactant. Tensiometry tests showed that the biosurfactant was able to lower the surface tension of water from 72 mN/m to 40 mN/m and the critical micelle concentration was 0.058 (w/w). Probit analysis for toxicity determination showed that there was no weight loss in Eisenia foetida specimens in a range between 10000 and 50000 ppm.
生物表面活性剂是微生物在生长和繁殖过程中产生的代谢产物。它们是能够改变表面和界面张力的两亲性分子。分离并鉴定了一株产石油、固氮、溶磷、生物表面活性剂的菌株。分离菌株在C:N比为2:1的Kim培养基中培养,由此测定其生长动力学。在不同时间采集培养液样品,并进行塌陷液滴、油分散度和乳化指数测试。最大培养生长发生在72小时。使用溶剂混合物从粗无细胞肉汤中提取生物表面活性剂,获得2.21g/L的产率。薄层色谱和FT-IR分析揭示了脂肽生物表面活性剂的存在。张力测试表明,该生物表面活性剂能将水的表面张力从72mN/m降低到40mN/m,临界胶束浓度为0.058(w/w)。用于毒性测定的Probit分析表明,在10000至50000ppm的范围内,赤子爱胜螺样品没有重量损失。
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引用次数: 0
Proceedings of the 3rd Biotechnology World Symposium. 4º Congreso Estudiantil de Ingeniería Biotecnológica SEIBT, XIV Encuentro de Investigadores de la Red de Biotecnología, XXIV Jornadas Académicas del Doctorado en Ciencias en Biotecnología 第三届世界生物技术研讨会论文集。第四届SEIBT生物技术工程学生大会,第十四届生物技术网络研究人员会议,第24届生物技术科学博士学术日
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-11-11 DOI: 10.29267/mxjb.2022.7.4.37
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引用次数: 0
Molecular interaction of linear and branched fructans of different sizes with levansucrase and inulosucrase from Lactobacillus gasseri: modeling and computational analysis 不同大小的直链和支链果聚糖与加氏乳杆菌的蔗糖酶和菊粉酶的分子相互作用:建模和计算分析
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-10-01 DOI: 10.29267/mxjb.2022.7.4.14
R. Martínez-Pérez, L. Moreno-Vilet
Human beings consume probiotics and prebiotics because of the health benefits they provide. Lactobacillus gasseri is a probiotic microorganism native to humans which produces glycolytic enzymes directed at the hydrolysis of soluble fibers as prebiotic fructans. In this work, levansucrase (LevG) and inulosucrase (InuGB) from L. gasseri were used to predict the ability of L. gasseri to interact with linear and branched fructans prebiotics (inulin and agavins). AlphaFold and SWISS-MODEL were the servers used for tertiary structure prediction of LevG and InuGB, and fructans with different degrees of polymerization (DP2, DP4 DP6, DP8, DP12 and DP20) were used to generate ligand-enzyme molecular dockings by AutodockVina, GlycoTorchVina, and Autodock FR software. The best affinity energies obtained by molecular docking were obtained with agavin and inulin with a DP of 6 and 8 units. Aspartic acid, glutamic acid, asparagine and arginin are the main amino acids involved in the interaction with these substrates. At the same time, the binding pocket shows hydrophilic characteristics; GlycoTorchVina was the best software for protein-ligand docking. These results demonstrate the ability of L. gasseri enzymes to interact with different molecular structures of fructans; levansucrase with better affinity to agavin and inulosucrase with better affinity to inulin. The above helps to understand the structure-functionality relationship of the prebiotic effect, both in symbiotic formulations and in the human digestive tract.
人类食用益生菌和益生元是因为它们对健康有益。气体乳杆菌是一种人类原生的益生菌微生物,它产生的糖酵解酶作为益生元果糖直接水解可溶性纤维。本研究利用L. gasseri的左旋蔗糖酶(LevG)和菊糖蔗糖酶(InuGB)预测了L. gasseri与直链果聚糖和支链果聚糖元(菊糖和龙葵)的相互作用能力。采用AlphaFold和SWISS-MODEL作为预测LevG和InuGB三级结构的服务器,采用AutodockVina、GlycoTorchVina和Autodock FR软件,利用不同聚合度的果聚糖(DP2、DP4、DP6、DP8、DP12和DP20)进行配体-酶分子对接。通过分子对接得到的最佳亲和能分别为6和8个单位。天冬氨酸、谷氨酸、天冬氨酸和精氨酸是与这些底物相互作用的主要氨基酸。同时,装订袋表现出亲水性;GlycoTorchVina是蛋白质与配体对接的最佳软件。这些结果证明了L. gasseri酶能够与果聚糖的不同分子结构相互作用;左旋蔗糖酶和菊糖酶对菊糖的亲和力较好。以上有助于理解共生制剂和人体消化道中益生元效应的结构-功能关系。
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引用次数: 0
Genetic characterization of bovine viral diarrhea virus detected in backyard cattle farms in Mexico 墨西哥后院养牛场检测到的牛病毒性腹泻病毒的遗传特征
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-10-01 DOI: 10.29267/mxjb.2022.7.4.1
F. Basurto-Alcántara, R. Lagunes-Quintanilla, Víctor Roldán-Rodríguez, U. Valdez-Espinoza, Ninnet Gómez-Romero
Infection by bovine viral diarrhea virus (BVDV) in cattle remains a source of significant economic losses for livestock producers. This virus is classified within the Pestivirus genus, including three main species: Pestivirus A (BVDV-1), Pestivirus B (BVDV-2), and Pestivirus H (HoBi-like pestivirus). Here, we performed a molecular epidemiological investigation aiming to evaluate the genetic diversity of BVDV in cattle from backyard farms in a municipality in Mexico named Tepalcingo, Morelos, with records of reproductive disorders. RT-PCR was conducted in 111 serum samples from affected cattle. Viral RNA was detected in 47.74% of the samples analyzed. Sequencing and phylogenetic analysis based on 5'UTR showed that the circulating subgenotype was BVDV-1a in all positive samples. These findings reveal the prevalence of BVDV in the surveyed population; thus suggesting a possible association with the previous records of reproductive manifestation in the herd. However, further studies are needed to confirm BVDV as the causative agent. Additionally, our results represent a helpful tool for designing control and prevention strategies accurate to the current regional epidemiological situation. Moreover, obtained information from this type of epidemiological study will assist the implementation of biosafety measures on backyard farms with limited economic resources.
牛病毒性腹泻病毒(BVDV)在牛身上的感染仍然是畜牧业生产者重大经济损失的来源。该病毒被归类为有害病毒属,包括三个主要物种:有害病毒A(BVDV-1)、有害病毒B(BVDV-2)和有害病毒H(类HoBi鼠疫病毒)。在这里,我们进行了一项分子流行病学调查,旨在评估墨西哥莫雷洛斯市Tepalcingo市后院农场牛的BVDV遗传多样性,该市有生殖障碍记录。对111份受影响牛血清样本进行了RT-PCR检测。47.74%的分析样本中检测到病毒核糖核酸。基于5’UTR的测序和系统发育分析表明,所有阳性样本的循环亚型均为BVDV-1a。这些发现揭示了BVDV在受调查人群中的流行情况;从而表明可能与先前记录的牛群繁殖表现有关。然而,还需要进一步的研究来确认BVDV是病原体。此外,我们的研究结果为设计精确到当前地区流行病学状况的控制和预防策略提供了一个有用的工具。此外,从这类流行病学研究中获得的信息将有助于在经济资源有限的后院农场实施生物安全措施。
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引用次数: 0
Evaluation of the tomato quality fertilized with sargassum extract from the Mexican Caribbean and mycorrhizae 墨西哥加勒比马尾藻提取物和菌根对番茄品质的评价
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-07-18 DOI: 10.29267/mxjb.2022.7.3.15
A. Romero-Rodríguez, H. S. Luna-Zendejas, A. Solís-Oba, R. Castro-Rivera, A. D. Armenta-Bojórquez, M. Solís-Oba
Tomato is one of the agricultural products with the highest economic value in the world, for its production agrochemicals are generally used, however, their excessive use has caused environmental problems. A commercial sargassum extract was evaluated as a fertilizer for tomato cultivation, it was applied at 2 (N2), 5 (N5) and 8% (N8), with and without inoculation (400 spores) of arbuscular mycorrhizal fungi; mineral fertilization (C+) and no fertilization (C-) were used as controls. With C+ the highest number and weight of tomatoes were obtained, but the fruits were mostly small in diameter; with organic fertilization, medium-sized fruits were obtained, and they surpassed those of C- in all the parameters evaluated. The highest content of carotenoids was found in the tomatoes from N2, N5, N8 and NM8, the highest amount of sugar in the fruits from N5, N8 and NM8, the highest maturity and flavor indices in all organically fertilized with and without arbuscular mycorrhizal fungi except NM5. The use of sargassum as a fertilizer is a good alternative to avoid the problems caused by its excessive arrival on the coasts, and it is given added value since a biofertilizer is obtained that helps production and improves the quality of tomatoes.
番茄是世界上经济价值最高的农产品之一,其生产中普遍使用农药,但农药的过度使用造成了环境问题。以商品马尾藻提取物作为番茄栽培肥料,分别以2 (N2)、5 (N5)和8% (N8)施用,接种和不接种菌根真菌(400孢子);以矿物施肥(C+)和不施肥(C-)作为对照。在C+处理下,番茄的数量和重量最高,但果实的直径大多较小;有机肥处理的果实中等,各项指标均优于C-处理。其中,N2、N5、N8和NM8处理的番茄类胡萝卜素含量最高,N5、N8和NM8处理的果实含糖量最高,除NM5外,所有有机施肥和不施用丛枝菌根真菌处理的果实成熟度和风味指标最高。使用马尾藻作为肥料是一个很好的选择,可以避免因其过量到达海岸而引起的问题,并且由于获得了有助于生产和提高西红柿质量的生物肥料,因此具有附加价值。
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引用次数: 0
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Mexican Journal of Biotechnology
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