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The impact of the COVID-19 pandemic on nosocomial infections and antimicrobial resistance (AMR) in intensive care units 2019冠状病毒病大流行对重症监护病房院内感染和抗菌素耐药性的影响
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-10 DOI: 10.1016/j.nmni.2025.101662
Lamiae Bennis, Youssef Elouardi, Hamza El Aarabi, Imane Oussayeh, Mohammed Khallouki
The COVID-19 pandemic may have influenced healthcare-associated infections (HAIs) and antimicrobial resistance (AMR), particularly in intensive care units (ICUs).
We performed a retrospective study in the ICU of Ibn Tofail Hospital, Marrakech, Morocco from March to September 2022. Patients hospitalized for more than 48 h were included. HAIs were defined according to CDC criteria, and antimicrobial susceptibility testing followed EUCAST guidelines. Results were compared with pre-pandemic data from 2019. Of 187 admitted patients, 145 were eligible, and 38 developed an HAI (26.3 %). The most frequent infections were pneumonia (37 %), catheter-related infections (27.5 %), and urinary tract infections (16.1 %). Among 112 isolates, Gram-negative bacteria predominated (82.7 %), mainly Klebsiella pneumoniae (26.8 %), Acinetobacter baumannii (17.9 %), and Pseudomonas aeruginosa (14.3 %). Compared with 2019 (98 isolates), K. pneumoniae increased significantly (17.3 % vs. 26.8 %, p = 0.048). Resistance to ceftazidime rose in P. aeruginosa (22.2 % vs. 56.3 %, p = 0.042), while methicillin resistance in Staphylococcus aureus declined (75.0 % vs. 25.0 %, p = 0.044). No significant changes were observed in carbapenem resistance. Multidrug resistance remained widespread (45.9 % vs. 50.9 %, p = 0.458).
HAIs in this ICU were mainly due to Gram-negative bacteria, with notable shifts in K. pneumoniae prevalence and specific resistance patterns after the pandemic. While multidrug resistance remains a pressing concern, most changes were limited in scope. These findings provide locally relevant data that can inform infection control and AMR surveillance strategies in North African ICUs.
COVID-19大流行可能影响了医疗保健相关感染(HAIs)和抗菌素耐药性(AMR),特别是在重症监护病房(icu)。我们于2022年3月至9月在摩洛哥马拉喀什Ibn Tofail医院的ICU进行了回顾性研究。住院时间超过48小时的患者纳入研究。HAIs根据CDC标准定义,抗菌药敏试验遵循EUCAST指南。结果与2019年大流行前的数据进行了比较。187例住院患者中,145例符合条件,38例发生HAI(26.3%)。最常见的感染是肺炎(37%)、导尿管相关感染(27.5%)和尿路感染(16.1%)。112株中以革兰氏阴性菌为主(82.7%),主要为肺炎克雷伯菌(26.8%)、鲍曼不动杆菌(17.9%)和铜绿假单胞菌(14.3%)。与2019年(98株)相比,肺炎克雷伯菌显著增加(17.3% vs. 26.8%, p = 0.048)。铜绿假单胞菌对头孢他啶的耐药性上升(22.2%比56.3%,p = 0.042),金黄色葡萄球菌对甲氧西林的耐药性下降(75.0%比25.0%,p = 0.044)。碳青霉烯类药物耐药性未见明显变化。多药耐药仍然普遍存在(45.9% vs 50.9%, p = 0.458)。该ICU的HAIs主要由革兰氏阴性菌引起,大流行后肺炎克雷伯菌患病率和特异性耐药模式发生了显著变化。虽然多药耐药仍然是一个紧迫的问题,但大多数变化的范围有限。这些发现提供了与当地相关的数据,可以为北非icu的感染控制和抗菌素耐药性监测战略提供信息。
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引用次数: 0
Genomic characterization of cefotaxime-resistant Proteobacteria isolated from a bat-harboring cave in Zambia 从赞比亚一个蝙蝠窝藏洞穴中分离的头孢噻肟耐药变形杆菌的基因组特征
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-08 DOI: 10.1016/j.nmni.2025.101661
Misheck Shawa , Harvey Kakoma Kamboyi , Herman Chambaro , Kyoko Hayashida , Naganori Nao , Joseph Chizimu , Mike Nundwe , Tuvshinzaya Zorigt , Naoko Kawai , Shohei Ogata , Joseph Ndebe , Mwamba Nsofwa , Msangwa Sinjani , Situmbeko J. Nasilele , Mulemba Samutela , Manyando Simbotwe , Katendi Changula , Hirofumi Sawa , Bernard M. Hang'ombe , Yasuhiko Suzuki , Hideaki Higashi
<div><div>Bats are widely recognized as reservoirs of emerging and re-emerging pathogens, and their ecological interactions with humans and livestock present important opportunities for the transmission of infectious agents and antimicrobial resistance (AMR). However, little is known about the occurrence of resistant bacteria in bat-associated environments in Zambia or their potential role in the maintenance of AMR outside clinical and agricultural settings. This study investigated the genomic characteristics of cefotaxime-resistant Proteobacteria isolated from bat fecal droppings collected at Leopards Hill Cave, an established hotspot for zoonotic pathogens. Four hundred bat fecal samples were cultured on cefotaxime-supplemented MacConkey agar, and those exhibiting bacterial growth were subjected to antimicrobial susceptibility testing and whole-genome analysis. Of the 400 samples processed, four (1 %) yielded growth, resulting in three bacterial species: <em>Pseudomonas aeruginosa</em> (n = 1), <em>Enterobacter mori</em> (n = 1), and <em>Brucella intermedia</em> (formerly <em>Ochrobactrum intermedium</em>) (n = 2). Genomic screening revealed that <em>P. aeruginosa</em> strain CB_234 harbored <em>bla</em><sub>OXA-50</sub>, <em>aph(3′)-IIb</em>, and <em>catB7</em>, which confer resistance to β-lactams, aminoglycosides, and chloramphenicol, respectively. It also possessed multiple virulence determinants involved in adherence, motility, and secretion systems that enhance host colonization and environmental persistence. Core genome phylogenetic analysis placed CB_234 within a clade exclusively composed of clinical isolates from Nigeria, Thailand, Russia, Kenya, and Ghana, indicating a shared evolutionary lineage among globally dispersed hospital-associated strains. Conversely, environmental isolates from plant and aquatic sources, along with a dog-associated isolate, were phylogenetically distant, highlighting the distinct evolutionary origins. The <em>E. mori</em> isolate carried <em>bla</em><sub>ACT</sub> and <em>qnrE</em> resistance genes and plasmid replicons, suggesting potential mobility of resistance traits through horizontal gene transfer. In contrast, the two <em>B. intermedia</em> isolates did not harbor any known AMR genes or plasmid replicons. However, this species is increasingly recognized as an opportunistic pathogen. The detection of AMR-associated bacterial species in a natural bat habitat supports the evidence of resistance determinants circulating in wildlife environments in Zambia. Given that bats are unlikely to encounter clinical antibiotics directly, the persistence of such genes in their environment suggests that natural ecosystems may play an underappreciated role in maintaining AMR reservoirs independent of direct antimicrobial pressure. These findings underscore the importance of incorporating wildlife and environmental niches into national and global AMR surveillance frameworks under a One Health approach to better unders
蝙蝠被广泛认为是新发和再发病原体的宿主,它们与人类和牲畜之间的生态相互作用为传染原和抗微生物药物耐药性(AMR)的传播提供了重要机会。然而,对于赞比亚蝙蝠相关环境中耐药细菌的发生情况,以及它们在临床和农业环境之外维持抗菌素耐药性方面的潜在作用,人们知之甚少。本研究研究了从人畜共患病原体研究热点豹子山洞穴收集的蝙蝠粪便中分离到的头孢噻肟耐药变形杆菌的基因组特征。在添加了头孢噻肟的麦康基琼脂培养基上培养400份蝙蝠粪便样本,对有细菌生长的样本进行药敏试验和全基因组分析。在处理的400个样品中,有4个(1%)产生了生长,产生了三种细菌:铜绿假单胞菌(n = 1)、家肠杆菌(n = 1)和中间布鲁氏菌(以前的中间嗜铬杆菌)(n = 2)。基因组筛选显示,P. aeruginosa菌株CB_234携带blaOXA-50、aph(3′)-IIb和catB7,分别对β-内酰胺类、氨基糖苷类和氯霉素具有抗性。它还具有多个毒力决定因素,涉及粘附,运动和分泌系统,增强宿主定植和环境持久性。核心基因组系统发育分析将CB_234置于一个完全由来自尼日利亚、泰国、俄罗斯、肯尼亚和加纳的临床分离株组成的分支中,表明全球分散的医院相关菌株具有共同的进化谱系。相反,从植物和水生来源的环境分离物,以及与狗相关的分离物,在系统发育上是遥远的,突出了不同的进化起源。家蚕分离物携带blaACT和qnrE抗性基因和质粒复制子,表明抗性性状可能通过水平基因转移而迁移。相比之下,两个中间芽孢杆菌分离株没有任何已知的AMR基因或质粒复制子。然而,这个物种越来越被认为是一种机会致病菌。在自然蝙蝠栖息地检测到与抗菌素耐药性相关的细菌种类,支持了在赞比亚野生动物环境中流传的耐药性决定因素的证据。鉴于蝙蝠不太可能直接遇到临床抗生素,这些基因在其环境中的持久性表明,自然生态系统可能在维持抗菌素耐药性库独立于直接抗菌素压力方面发挥了未被充分认识的作用。这些发现强调了在“同一个健康”方针下将野生动物和环境生态位纳入国家和全球抗菌素耐药性监测框架的重要性,以便更好地了解抗菌素耐药性出现和传播的生态层面。
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引用次数: 0
Strongyloides stercoralis hyperinfection with thrombosis: A systematic review of case reports 粪圆线虫过度感染伴血栓形成:病例报告的系统回顾
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-08 DOI: 10.1016/j.nmni.2025.101659
Darío S. López-Delgado , Carlos A. Narváez , Roberto Bonfante-Villalobos , Joshua Emmanuel Arteaga , Hector Fabio Sanchez-Galvez , Andres Ricaurte-Fajardo , Lysien Zambrano , Alfonso J. Rodriguez-Morales

Background

Strongyloides stercoralis hyperinfection syndrome (SHS) is a severe complication of strongyloidiasis, typically in immunosuppressed patients. While sepsis and multiorgan dysfunction are well recognized, the association with thrombotic complications remains underexplored.

Methods

We conducted a systematic review of case reports and case series following PRISMA 2020 guidelines. PubMed, Embase, Scopus, Web of Science, and Google Scholar were searched through December 2024. Eligible studies included patients with SHS or disseminated strongyloidiasis and confirmed thrombotic events. Data on demographics, risk factors, infection characteristics, thrombosis, treatment, and outcomes were extracted and narratively synthesized.

Results

Fourteen studies describing 16 cases of SHS with thrombosis published between 2013 and 2024 were included. Median age was 66 years (range 40–87), with a slight male predominance. Most patients (68.8%) were immunosuppressed, primarily due to corticosteroid therapy. Thrombotic events were heterogeneous, including deep vein thrombosis, pulmonary embolism, portal and renal vein thrombosis, intracardiac thrombi, and disseminated intravascular coagulation. Multifocal thrombosis (arterial + venous) occurred in 3/16 (18.8%) cases; shock was present in 5/16 (31.3%). Ivermectin was the mainstay of therapy, alone or with albendazole, although treatment regimens were inconsistently reported. Anticoagulation was frequently initiated, and two cases required thrombectomy. Despite treatment, overall mortality reached 31.3%, particularly among immunosuppressed patients with shock or disseminated thrombosis.

Conclusions

SHS can be complicated by diverse and often fatal thrombotic events, especially in immunosuppressed individuals. Clinical suspicion should be heightened in patients from endemic regions or those receiving corticosteroids. Early empiric antiparasitic therapy, timely investigation for thrombotic complications, and individualized anticoagulation strategies are essential to improving outcomes. Given the reliance on case-level evidence, prospective studies and standardized reporting are urgently needed to characterize better risk factors, optimal management, and prognosis of this neglected but critical complication.
背景:粪类圆线虫过度感染综合征(SHS)是类圆线虫病的严重并发症,通常发生在免疫抑制患者中。虽然脓毒症和多器官功能障碍是公认的,但与血栓性并发症的关系仍未得到充分探讨。方法:我们按照PRISMA 2020指南对病例报告和病例系列进行了系统回顾。PubMed、Embase、Scopus、Web of Science和b谷歌Scholar的检索截止到2024年12月。符合条件的研究包括患有SHS或播散性圆线虫病并确认有血栓形成事件的患者。人口统计学、危险因素、感染特征、血栓形成、治疗和结果的数据被提取并叙述合成。结果纳入2013 - 2024年间发表的14篇文献,共16例伴有血栓形成的SHS。中位年龄66岁(40-87岁),男性稍占优势。大多数患者(68.8%)免疫抑制,主要是由于皮质类固醇治疗。血栓形成事件是异质性的,包括深静脉血栓、肺栓塞、门脉和肾静脉血栓、心内血栓和弥散性血管内凝血。多灶性血栓(动脉+静脉)3/16 (18.8%);5/16(31.3%)出现休克。伊维菌素是主要的治疗方法,单独或与阿苯达唑,尽管治疗方案的报道不一致。抗凝频繁启动,2例需要取栓。尽管接受了治疗,但总体死亡率达到31.3%,特别是在免疫抑制的休克或弥散性血栓患者中。结论shs可并发多种致死性血栓事件,尤其是免疫抑制个体。对来自流行地区的患者或接受皮质类固醇治疗的患者应加强临床怀疑。早期经验性抗寄生虫治疗、及时调查血栓性并发症和个体化抗凝策略对改善预后至关重要。鉴于对病例级证据的依赖,迫切需要前瞻性研究和标准化报告来描述这种被忽视但重要的并发症的更好的危险因素,最佳管理和预后。
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引用次数: 0
Amazon environment sharing featuring humans - dogs - capybaras and more. Adapting a one-health approach to leptospirosis prevention in Indigenous riverine communities in Ecuador and beyond 亚马逊环境共享,包括人类、狗、水豚等。在厄瓜多尔及其他地区的土著河流社区采用单一健康方法预防钩端螺旋体病
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-06 DOI: 10.1016/j.nmni.2025.101658
Jacob van der Ende , Jacob M. Bezemer , Thomas Hanscheid , Martin P. Grobusch , Gabriel Trueba
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引用次数: 0
Epidemiology of fungal urinary tract infections: A retrospective case series 真菌性尿路感染的流行病学:回顾性病例系列
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-11-06 DOI: 10.1016/j.nmni.2025.101657
Aiah M. Khateb , Lina S Alamri , Ward A Alseyoufi , Yara H Almusaiferi , Osama Y. Safdar

Background

Fungal urinary tract infections (FUTIs) are a growing concern among hospitalized patients, with Candida albicans being the most common causative agent. The aim of this case series was to describe the clinical and microbiological characteristics of FUTIs in patients admitted to a key hospital in the Madinah region.

Materials and methods

This retrospective observational study used data from all hospitalized patients with positive urine cultures for fungal infections accompanied by clinical symptoms at King Fahd Hospital between June 2016 and October 2019. Patient demographics, clinical comorbidities, and microbiological data were collected for analysis.

Results

During the study period, 46 patients with confirmed FUTIs were identified from 87,447 admissions. There was a dramatic increase in the number of cases every year. C. albicans was the most frequently isolated organism, accounting for 86.9 % cases. Renal disease was the most prevalent comorbidity.

Conclusion

This case series highlights the demographic and clinical characteristics of patients with confirmed FUTIs, providing valuable insights into the increasing burden of these infections in hospital settings. The findings underscore the importance of understanding risk factors and the need for continuous surveillance to inform clinical practice and guide prompt and effective intervention.
背景真菌性尿路感染(FUTIs)在住院患者中日益受到关注,白色念珠菌是最常见的病原体。本病例系列的目的是描述麦地那地区一家重点医院收治的FUTIs患者的临床和微生物特征。材料和方法本回顾性观察性研究使用了2016年6月至2019年10月法赫德国王医院所有伴有临床症状的真菌感染尿培养阳性住院患者的数据。收集患者人口统计学、临床合并症和微生物学数据进行分析。结果在研究期间,从87,447例入院患者中鉴定出46例确诊FUTIs患者。每年的病例数量都在急剧增加。白色念珠菌是最常见的分离菌,占86.9%。肾脏疾病是最常见的合并症。该病例系列突出了确诊FUTIs患者的人口学和临床特征,为医院环境中这些感染日益增加的负担提供了有价值的见解。研究结果强调了了解风险因素的重要性和持续监测的必要性,以便为临床实践提供信息并指导及时有效的干预。
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引用次数: 0
Molecular detection of Haemophilus influenzae type b and non-typeable strains by PCR in infants under one year hospitalized with community-acquired pneumonia in Peru, 2010–2012 2010-2012年秘鲁社区获得性肺炎住院1岁以下婴儿b型和非分型流感嗜血杆菌分子检测
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-30 DOI: 10.1016/j.nmni.2025.101655
Miguel Angel Aguilar-Luis , Wilmer Silva-Caso , Angela Cornejo-Tapia , Erico Cieza-Mora , Pablo Weilg , Carlos Bada , Olguita del Aguila , Juana del Valle-Mendoza

Background

Community-acquired pneumonia (CAP) is one of the most common causes of morbidity and mortality among children under five worldwide. Haemophilus influenzae—particularly encapsulated serotype b (Hib) and non-typeable strains (NTHi)—remains an important pathogen. Peru introduced Hib vaccination nationally in 2004, but pediatric molecular data from the early post-introduction period are limited.

Objectives

To estimate the molecular prevalence of Hib and NTHi and identify associated clinical/epidemiological factors among infants (<1 year) hospitalized with CAP in Peru during 2010–2012, providing an early post-introduction baseline to inform long-term trends. Method: We conducted a prospective multicenter study in five hospitals. Nasopharyngeal swabs underwent conventional PCR for H. influenzae detection (1000-bp) and serotyping (Hib 310-bp; NTHi 550-bp). Associations were evaluated using χ2/Fisher's tests and multivariable logistic/multinomial regression.

Results

Among 339 infants, H. Influenzae was detected in 26.8 % (91/339): Hib 24.2 % (22/91), NTHi 3.3 % (3/91), and other encapsulated serotypes 72.5 % (66/91). In adjusted models, absence of documented Hib vaccination before admission was independently associated with Hib detection (p < 0.001). Atelectasis was associated with non-b encapsulated serotypes (RRR 2.41; 95 % CI 1.02–5.74; p = 0.046). Age and sex showed no independent associations.

Conclusion

These findings do not represent the current epidemiology; rather, they delineate an early post-introduction baseline for Hib/NTHi in Peruvian infants with CAP. Our findings contribute to the timeline of H. influenzae epidemiology in Peru, supports evaluations of vaccine impact over time, and underscores the need for sustained molecular surveillance and on-schedule Hib vaccination.
社区获得性肺炎(CAP)是全世界五岁以下儿童发病和死亡的最常见原因之一。流感嗜血杆菌,特别是包膜b型血清(Hib)和非分型菌株(NTHi),仍然是一种重要的病原体。秘鲁于2004年在全国推广Hib疫苗接种,但推广后早期的儿科分子数据有限。目的评估2010-2012年秘鲁因CAP住院的婴儿(1岁)中Hib和NTHi的分子流行率,并确定相关的临床/流行病学因素,为引入后的早期基线提供信息,以了解长期趋势。方法:在5家医院进行前瞻性多中心研究。对鼻咽拭子进行常规PCR检测流感嗜血杆菌(1000-bp)和血清分型(Hib 310-bp; NTHi 550-bp)。采用χ2/Fisher检验和多变量logistic/多项回归对相关性进行评估。结果339例婴儿中,流感嗜血杆菌检出率为26.8% (91/339),Hib检出率为24.2% (22/91),NTHi检出率为3.3%(3/91),其他包膜血清型检出率为72.5%(66/91)。在调整后的模型中,入院前未接种Hib疫苗与Hib检测独立相关(p < 0.001)。肺不张与非b包封血清型相关(RRR 2.41; 95% CI 1.02-5.74; p = 0.046)。年龄和性别没有独立的关联。结论这些发现不能代表当前的流行病学;相反,它们描绘了秘鲁CAP婴儿Hib/NTHi引入后的早期基线。我们的研究结果有助于秘鲁流感嗜血杆菌流行病学的时间表,支持随着时间的推移对疫苗影响的评估,并强调了持续分子监测和按时接种Hib疫苗的必要性。
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引用次数: 0
Epidemiological characteristics of pediatric respiratory pathogens and their association with climate in Wuxi, Chongqing, China 重庆市无锡市儿童呼吸道病原体流行病学特征及其与气候的关系
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-28 DOI: 10.1016/j.nmni.2025.101656
Caili Luo , Xingyu Wang , Na Zhou

Background

Acute respiratory infections impose a disproportionate burden on pediatric populations, yet climate-pathogen interactions remain poorly characterized in rural China.

Methods

We conducted a retrospective analysis of 7627 nasopharyngeal samples from children (<18 years) presenting with ARI symptoms at Wuxi People's Hospital (April 2023–March 2025). Six major pathogens--respiratory syncytial virus (RSV), influenza A/B (IAV/IBV), human rhinovirus (HRV), adenovirus (HAdV), and Mycoplasma pneumoniae (MP)--were detected by quantitative PCR. The association between meteorological factors and pathogen prevalence was examined.

Results

HRV (22.18 %), IAV (18.54 %), and RSV (16.56 %) were the most prevalent pathogens, with RSV and HAdV showing higher hospitalization rates. Male children were more susceptible to all pathogens, particularly RSV (p = 0.024). Age-specific distributions revealed RSV dominance in infants (28 days-1 year) and toddlers (1–3 years), HRV and HAdV in preschoolers (3–6 years), and IAV and MP in school-aged children (6–18 years). Seasonal trends included year-round HRV and HAdV circulation, winter peaks for IAV and RSV, and an unexpected summer MP surge (26.88 % in June 2024). RSV exhibited an initial epidemic in 2023 (peak positivity: 52.27 % in April) with resurgence in October 2024. Climate analysis revealed temperature-dependent transmission: IAV/IBV correlated with colder temperatures. Notably, MP displayed atypical summer predominance in 2024, peaking at 26.88 % in June (25.2 °C, 77.3 % humidity).

Conclusion

This study characterizes the epidemiological and climatic drivers of pediatric ARIs in Wuxi, China, underscoring pathogen-specific age distributions, seasonal anomalies, and climate interactions. The findings emphasize the need for sustained surveillance to monitor emerging respiratory threats and inform targeted interventions.
背景:急性呼吸道感染对儿科人群造成了不成比例的负担,但在中国农村地区,气候-病原体相互作用的特征仍然很差。方法回顾性分析2023年4月- 2025年3月无锡市人民医院出现ARI症状的儿童(18岁)鼻咽样本7627份。通过定量PCR检测了呼吸道合胞病毒(RSV)、流感A/B (IAV/IBV)、人鼻病毒(HRV)、腺病毒(hav)和肺炎支原体(MP) 6种主要病原体。探讨了气象因素与病原菌流行的关系。结果shrv(22.18%)、IAV(18.54%)和RSV(16.56%)是最常见的致病菌,其中RSV和hav住院率较高。男童更易感染所有病原体,尤其是RSV (p = 0.024)。年龄特异性分布显示,RSV在婴儿(28天-1岁)和幼儿(1-3岁)中占优势,HRV和hav在学龄前儿童(3-6岁)中占优势,IAV和MP在学龄儿童(6-18岁)中占优势。季节性趋势包括全年HRV和hav流行,IAV和RSV冬季高峰,以及意想不到的夏季MP激增(2024年6月26.88%)。RSV于2023年首次流行(4月阳性高峰为52.27%),2024年10月再次流行。气候分析显示温度依赖传播:IAV/IBV与较冷的温度相关。值得注意的是,MP在2024年表现出非典型的夏季优势,在6月(25.2°C, 77.3%湿度)达到26.88%的峰值。结论本研究分析了中国无锡市儿童急性呼吸道感染的流行病学和气候驱动因素,强调了病原体特异性年龄分布、季节异常和气候相互作用。研究结果强调需要持续监测,以监测新出现的呼吸道威胁并为有针对性的干预措施提供信息。
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引用次数: 0
Clinical features of yellow fever in cases from Bolivia, Ecuador, Colombia, and Peru (2023–2025): A descriptive retrospective study 玻利维亚、厄瓜多尔、哥伦比亚和秘鲁病例的临床特征(2023-2025年):一项描述性回顾性研究
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-16 DOI: 10.1016/j.nmni.2025.101651
Alfonso J. Rodriguez-Morales , Boris Chang-Cheng , Rosmery Gross , Oscar Eduardo Llanque-Espinoza , Jesus Villamil-Macareno , Cristian Pacheco-Jimenez , Gabriela Belén Pineda-Bersoza , Nelson Fernando Delgado-Torres , Ivan Camilo Sanchez-Rojas , Catherin Lorena Solarte-Jimenez , Eibar Camilo Chamorro-Velazco , Glinys Edith Diaz-Llerena , Cristian Daniel Arevalo , Olga Lucia Cuasquer-Posos , Jorge Luis Bonilla-Aldana , D. Katterine Bonilla-Aldana , Franklin Rómulo Aguilar-Gamboa , Johana E. Aparicio-Sigueñas , Miguel Villegas-Chiroque , Sergio Luis Aguilar-Martinez , Wilmer E. Villamil-Gómez

Background

Yellow fever (YF) persists as a major arboviral threat in South America, despite the availability of an effective vaccine. While Brazil has produced extensive clinical descriptions, data from Bolivia, Ecuador, Colombia, and Peru remain limited.

Methods

We conducted a descriptive retrospective multicenter analysis of laboratory-confirmed YF cases reported between January 2023 and August 2025 in four Andean countries. Demographic, epidemiological, clinical, and laboratory data were extracted from hospital and surveillance records.

Results

Twenty-one confirmed cases were identified: Bolivia (n = 8), Ecuador (n = 5), Colombia (n = 4), and Peru (n = 4). The median age was 25 years (IQR: 16–43), with a predominance of males (81 %). Vaccination history was largely undocumented; 86 % had unknown or absent records. The median delay from symptom onset to hospitalization was 5 days. Outcomes were severe, with a case fatality rate of 57 % (12/21), and the median time from symptom onset to death was 8 days. Early manifestations included fever (71 %), arthralgia (19 %), headache (19 %), and myalgia (19 %). During the toxic phase (severe disease), hemorrhage (86 %), jaundice (62 %), circulatory collapse (57 %), and hepatic dysfunction (52 %) predominated. Complications included intracranial hemorrhage, multiorgan dysfunction, sepsis, and renal failure. Laboratory findings revealed marked hepatic injury (AST median, 3257 U/L; ALT median, 1570 U/L), hyperbilirubinemia, metabolic acidosis, elevated lactate levels, hypoglycemia, and coagulopathy. RT-PCR for YFV was positive in 95 % of tested cases.

Conclusions

This study provides one of the first systematic clinical characterizations of YF cases from Bolivia, Ecuador, Colombia, and Peru. The high fatality rate, despite the young age of patients, underscores the vulnerability of populations in resource-limited, peri-Amazonian settings. Severe hepatic dysfunction, hemorrhage, and systemic collapse were consistent hallmarks of the disease. These findings highlight the urgent need to strengthen vaccination coverage, enhance clinical recognition, and expand access to critical care in outbreak-prone areas of South America.
背景:尽管有有效的疫苗,黄热病仍然是南美洲主要的虫媒病毒威胁。虽然巴西已经产生了广泛的临床描述,但玻利维亚、厄瓜多尔、哥伦比亚和秘鲁的数据仍然有限。方法对2023年1月至2025年8月在四个安第斯国家报告的实验室确诊的YF病例进行了描述性回顾性多中心分析。从医院和监测记录中提取人口统计学、流行病学、临床和实验室数据。结果共发现21例确诊病例:玻利维亚(n = 8)、厄瓜多尔(n = 5)、哥伦比亚(n = 4)、秘鲁(n = 4)。中位年龄为25岁(IQR: 16-43),以男性为主(81%)。疫苗接种史基本上没有记录;86%有未知或不存在的记录。从症状出现到住院的中位延迟时间为5天。结果很严重,病死率为57%(12/21),从症状出现到死亡的中位时间为8天。早期表现包括发热(71%)、关节痛(19%)、头痛(19%)和肌痛(19%)。在毒性期(严重疾病),以出血(86%)、黄疸(62%)、循环衰竭(57%)和肝功能障碍(52%)为主。并发症包括颅内出血、多器官功能障碍、败血症和肾功能衰竭。实验室结果显示明显的肝损伤(AST中值为3257 U/L; ALT中值为1570 U/L)、高胆红素血症、代谢性酸中毒、乳酸水平升高、低血糖和凝血功能障碍。在95%的检测病例中,YFV RT-PCR呈阳性。本研究为玻利维亚、厄瓜多尔、哥伦比亚和秘鲁的YF病例提供了第一个系统的临床特征。尽管患者年龄小,但死亡率却很高,这凸显了资源有限的亚马逊周边地区人口的脆弱性。严重的肝功能障碍、出血和全身衰竭是该病的一贯特征。这些发现突出表明,迫切需要在南美洲疫情易发地区加强疫苗接种覆盖率,提高临床认识,并扩大获得重症监护的机会。
{"title":"Clinical features of yellow fever in cases from Bolivia, Ecuador, Colombia, and Peru (2023–2025): A descriptive retrospective study","authors":"Alfonso J. Rodriguez-Morales ,&nbsp;Boris Chang-Cheng ,&nbsp;Rosmery Gross ,&nbsp;Oscar Eduardo Llanque-Espinoza ,&nbsp;Jesus Villamil-Macareno ,&nbsp;Cristian Pacheco-Jimenez ,&nbsp;Gabriela Belén Pineda-Bersoza ,&nbsp;Nelson Fernando Delgado-Torres ,&nbsp;Ivan Camilo Sanchez-Rojas ,&nbsp;Catherin Lorena Solarte-Jimenez ,&nbsp;Eibar Camilo Chamorro-Velazco ,&nbsp;Glinys Edith Diaz-Llerena ,&nbsp;Cristian Daniel Arevalo ,&nbsp;Olga Lucia Cuasquer-Posos ,&nbsp;Jorge Luis Bonilla-Aldana ,&nbsp;D. Katterine Bonilla-Aldana ,&nbsp;Franklin Rómulo Aguilar-Gamboa ,&nbsp;Johana E. Aparicio-Sigueñas ,&nbsp;Miguel Villegas-Chiroque ,&nbsp;Sergio Luis Aguilar-Martinez ,&nbsp;Wilmer E. Villamil-Gómez","doi":"10.1016/j.nmni.2025.101651","DOIUrl":"10.1016/j.nmni.2025.101651","url":null,"abstract":"<div><h3>Background</h3><div>Yellow fever (YF) persists as a major arboviral threat in South America, despite the availability of an effective vaccine. While Brazil has produced extensive clinical descriptions, data from Bolivia, Ecuador, Colombia, and Peru remain limited.</div></div><div><h3>Methods</h3><div>We conducted a descriptive retrospective multicenter analysis of laboratory-confirmed YF cases reported between January 2023 and August 2025 in four Andean countries. Demographic, epidemiological, clinical, and laboratory data were extracted from hospital and surveillance records.</div></div><div><h3>Results</h3><div>Twenty-one confirmed cases were identified: Bolivia (n = 8), Ecuador (n = 5), Colombia (n = 4), and Peru (n = 4). The median age was 25 years (IQR: 16–43), with a predominance of males (81 %). Vaccination history was largely undocumented; 86 % had unknown or absent records. The median delay from symptom onset to hospitalization was 5 days. Outcomes were severe, with a case fatality rate of 57 % (12/21), and the median time from symptom onset to death was 8 days. Early manifestations included fever (71 %), arthralgia (19 %), headache (19 %), and myalgia (19 %). During the toxic phase (severe disease), hemorrhage (86 %), jaundice (62 %), circulatory collapse (57 %), and hepatic dysfunction (52 %) predominated. Complications included intracranial hemorrhage, multiorgan dysfunction, sepsis, and renal failure. Laboratory findings revealed marked hepatic injury (AST median, 3257 U/L; ALT median, 1570 U/L), hyperbilirubinemia, metabolic acidosis, elevated lactate levels, hypoglycemia, and coagulopathy. RT-PCR for YFV was positive in 95 % of tested cases.</div></div><div><h3>Conclusions</h3><div>This study provides one of the first systematic clinical characterizations of YF cases from Bolivia, Ecuador, Colombia, and Peru. The high fatality rate, despite the young age of patients, underscores the vulnerability of populations in resource-limited, peri-Amazonian settings. Severe hepatic dysfunction, hemorrhage, and systemic collapse were consistent hallmarks of the disease. These findings highlight the urgent need to strengthen vaccination coverage, enhance clinical recognition, and expand access to critical care in outbreak-prone areas of South America.</div></div>","PeriodicalId":38074,"journal":{"name":"New Microbes and New Infections","volume":"68 ","pages":"Article 101651"},"PeriodicalIF":5.4,"publicationDate":"2025-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145417035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bloodstream infections in Cameroon: a systematic review and meta-analysis 喀麦隆的血液感染:系统回顾和荟萃分析
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-14 DOI: 10.1016/j.nmni.2025.101654
Moise Matakone , Sen Claudine Henriette Ngomtcho , Patrice Landry Koudoum , Isaac Dah , Ravalona Jessica Zemtsa , Michel Noubom

Background

Bloodstream infections (BSIs) are significantly associated with morbidity and mortality worldwide, and particularly in low-resource settings. We determined the prevalence of BSIs, profile, and antimicrobial resistance of the causing bacteria in Cameroon.

Methods

PubMed, Google Scholar and ScienceDirect databases were searched to identify relevant studies. The random or fixed effect model was used depending on the level of heterogeneity among studies for pooling estimates after the variance was stabilised through the Freeman-Tukey double arcsine transformation. Begg's and Egger's tests were used to quantify publication bias. The protocol was registered in PROSPERO (CRD42023482760).

Results

The analysis of 5680 blood cultures from ten studies revealed an overall bacterial BSI prevalence of 25.2 % (95 % CI: 18.1–33.2 %) and 17.2 % (11.6–23.7 %) when the potential contaminants were removed. The leading BSI-causing bacteria were Escherichia coli, Klebsiella species, and Staphylococcus aureus. We found significant resistance to clinically relevant antibiotics, particularly to extended-spectrum cephalosporins in E. coli, Klebsiella species and Acinetobacter species, whereas resistance rates were lowest against carbapenems. Staphylococci displayed resistance rates above 30 % to all tested antibiotics. WHO bacterial priority pathogens occupied a greater proportion of the overall BSI-driven bacteria.

Conclusion

This study reports a substantial prevalence of BSI and resistance to the commonly used antibiotics. It also points out the lack of compliance with international guidelines in microbiological analysis. This highlights the need to empower laboratories’ capacities and conduct BSI surveillance across the country to develop more targeted strategies for the prevention, management and treatment of BSIs.
血液感染(bsi)与世界范围内的发病率和死亡率显著相关,特别是在低资源环境中。我们确定了喀麦隆BSIs的患病率、概况和引起细菌的抗菌素耐药性。方法检索spubmed、b谷歌Scholar和ScienceDirect数据库,筛选相关研究。在通过Freeman-Tukey双反正弦变换稳定方差后,根据研究之间的异质性水平,使用随机或固定效应模型进行池化估计。Begg’s和Egger’s检验用于量化发表偏倚。该协议在PROSPERO (CRD42023482760)中注册。结果10项研究的5680份血培养分析显示,去除潜在污染物后,细菌BSI的总体患病率为25.2% (95% CI: 18.1 ~ 33.2%)和17.2%(11.6 ~ 23.7%)。导致bsi的主要细菌是大肠杆菌、克雷伯氏菌和金黄色葡萄球菌。我们发现大肠杆菌、克雷伯菌和不动杆菌对临床相关抗生素有明显的耐药性,特别是对广谱头孢菌素,而对碳青霉烯类抗生素的耐药率最低。葡萄球菌对所有测试抗生素的耐药率均在30%以上。世卫组织细菌重点病原体在总体bsi驱动细菌中占较大比例。结论本研究报告了BSI的大量流行和对常用抗生素的耐药性。它还指出,在微生物分析方面缺乏对国际准则的遵守。这突出表明有必要增强实验室的能力,并在全国范围内开展BSI监测,以制定更有针对性的预防、管理和治疗BSI的战略。
{"title":"Bloodstream infections in Cameroon: a systematic review and meta-analysis","authors":"Moise Matakone ,&nbsp;Sen Claudine Henriette Ngomtcho ,&nbsp;Patrice Landry Koudoum ,&nbsp;Isaac Dah ,&nbsp;Ravalona Jessica Zemtsa ,&nbsp;Michel Noubom","doi":"10.1016/j.nmni.2025.101654","DOIUrl":"10.1016/j.nmni.2025.101654","url":null,"abstract":"<div><h3>Background</h3><div>Bloodstream infections (BSIs) are significantly associated with morbidity and mortality worldwide, and particularly in low-resource settings. We determined the prevalence of BSIs, profile, and antimicrobial resistance of the causing bacteria in Cameroon.</div></div><div><h3>Methods</h3><div>PubMed, Google Scholar and ScienceDirect databases were searched to identify relevant studies. The random or fixed effect model was used depending on the level of heterogeneity among studies for pooling estimates after the variance was stabilised through the Freeman-Tukey double arcsine transformation. Begg's and Egger's tests were used to quantify publication bias. The protocol was registered in PROSPERO (CRD42023482760).</div></div><div><h3>Results</h3><div>The analysis of 5680 blood cultures from ten studies revealed an overall bacterial BSI prevalence of 25.2 % (95 % CI: 18.1–33.2 %) and 17.2 % (11.6–23.7 %) when the potential contaminants were removed. The leading BSI-causing bacteria were <em>Escherichia coli</em>, <em>Klebsiella</em> species, and <em>Staphylococcus aureus</em>. We found significant resistance to clinically relevant antibiotics, particularly to extended-spectrum cephalosporins in <em>E. coli</em>, <em>Klebsiella</em> species and <em>Acinetobacter</em> species, whereas resistance rates were lowest against carbapenems. Staphylococci displayed resistance rates above 30 % to all tested antibiotics. WHO bacterial priority pathogens occupied a greater proportion of the overall BSI-driven bacteria.</div></div><div><h3>Conclusion</h3><div>This study reports a substantial prevalence of BSI and resistance to the commonly used antibiotics. It also points out the lack of compliance with international guidelines in microbiological analysis. This highlights the need to empower laboratories’ capacities and conduct BSI surveillance across the country to develop more targeted strategies for the prevention, management and treatment of BSIs.</div></div>","PeriodicalId":38074,"journal":{"name":"New Microbes and New Infections","volume":"68 ","pages":"Article 101654"},"PeriodicalIF":5.4,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145321050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Acinetobacter towneri harbouring blaNDM-1 and blaOXA-58: genomic characterization of the first human isolate from Brazil 含有blaNDM-1和blaOXA-58的towneri不动杆菌:巴西首个人类分离物的基因组特征
IF 5.4 Q2 INFECTIOUS DISEASES Pub Date : 2025-10-13 DOI: 10.1016/j.nmni.2025.101652
Daiana Cristina Silva Rodrigues , Bruna Ribeiro Sued-Karam , Melise Chaves Silveira , Orlando Carlos da Conceição-Neto , Bruno Rocha Pribul , Ana Paula D'Alincourt Carvalho-Assef , Cláudio Marcos Rocha-de-Souza
{"title":"Acinetobacter towneri harbouring blaNDM-1 and blaOXA-58: genomic characterization of the first human isolate from Brazil","authors":"Daiana Cristina Silva Rodrigues ,&nbsp;Bruna Ribeiro Sued-Karam ,&nbsp;Melise Chaves Silveira ,&nbsp;Orlando Carlos da Conceição-Neto ,&nbsp;Bruno Rocha Pribul ,&nbsp;Ana Paula D'Alincourt Carvalho-Assef ,&nbsp;Cláudio Marcos Rocha-de-Souza","doi":"10.1016/j.nmni.2025.101652","DOIUrl":"10.1016/j.nmni.2025.101652","url":null,"abstract":"","PeriodicalId":38074,"journal":{"name":"New Microbes and New Infections","volume":"68 ","pages":"Article 101652"},"PeriodicalIF":5.4,"publicationDate":"2025-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145321049","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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New Microbes and New Infections
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