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Antonie van Leeuwenhoek and the dawn of microscopic observation: a narrative review from Delft's lens to the modern microscope. 安东尼·范·列文虎克与显微镜观察的曙光:从代尔夫特的镜头到现代显微镜的叙事回顾。
Q3 Immunology and Microbiology Pub Date : 2026-02-02 DOI: 10.1186/s42649-026-00123-z
Hyunjeong Lee, Im Joo Rhyu

Antonie van Leeuwenhoek (1632-1723) transformed observation into science through the power of a single handmade lens. His work emerged from the visual culture of seventeenth-century Delft, where craftsmanship, optics, and artistic precision intersected. While Robert Hooke's compound microscope introduced the idea of microscopic visualization, Leeuwenhoek's single-lens instruments achieved far superior magnification and resolution by minimizing optical interfaces. Using these deceptively simple devices, he documented the first observations of free-living microorganisms, fungal hyphae, red blood cells, capillary flow, oral bacteria, and spermatozoa in more than two hundred letters to the Royal Society of London.But his investigations reached far beyond microbiology. Leeuwenhoek also examined the barbed structure of the bee sting, the ordered vessels of ash wood, and the geometric microstructure of crystals and salts-demonstrating that hidden organization pervades both living and non-living matter. These studies established microscopy as a universal investigative tool, capable of unifying biology, medicine, botany, and early materials science under a single optical principle.Leeuwenhoek's work marks one of the earliest examples of how rigorous observation can redefine scientific domains. His use of a home-crafted single lens created an empirical foundation for biological microscopy that persists to this day. The legacy of his minimalist optical design also survives in the digital age: modern clip-on smartphone microscopes and paper-based platforms such as the Foldscope reproduce the same single-lens principle through micro-optics mounted directly onto digital sensors.Three and a half centuries later, his work continues to remind us that new worlds do not emerge from new theories alone, but from new ways of seeing.

安东尼·范·列文虎克(1632-1723)通过一个手工透镜的力量将观察变成了科学。他的作品来自17世纪代尔夫特的视觉文化,在那里,工艺、光学和艺术精度交叉在一起。罗伯特·胡克的复合显微镜引入了显微镜可视化的概念,列文虎克的单镜头仪器通过最小化光学界面实现了远超于显微镜的放大倍率和分辨率。利用这些看似简单的设备,他在给伦敦皇家学会的200多封信中记录了对自由生活的微生物、真菌菌丝、红细胞、毛细血管流动、口腔细菌和精子的首次观察。但他的研究远远超出了微生物学。列文虎克还研究了蜜蜂螫刺的倒刺结构、白蜡树的有序容器、晶体和盐的几何微观结构——证明了生物和非生物物质中都存在着隐藏的组织。这些研究建立了显微镜作为一种通用的研究工具,能够在单一的光学原理下统一生物学,医学,植物学和早期材料科学。列文虎克的工作标志着严谨观察如何重新定义科学领域的最早例子之一。他使用自制的单透镜为生物显微术奠定了经验基础,这种基础一直持续到今天。他的极简主义光学设计遗产在数字时代依然存在:现代夹式智能手机显微镜和折纸平台(如Foldscope)通过直接安装在数字传感器上的微光学元件再现了相同的单镜头原理。三个半世纪后,他的工作继续提醒我们,新的世界并不仅仅来自新的理论,而是来自新的观察方式。
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引用次数: 0
The effects of nanopillar and nanopit arrays on the morphology and osteogenic differentiation of adipose-derived stem cells 纳米柱和纳米颗粒阵列对脂肪干细胞形态和成骨分化的影响
Q3 Immunology and Microbiology Pub Date : 2026-01-24 DOI: 10.1186/s42649-026-00122-0
Jihun Kang, Young-Shik Yun, Eun-Hye Kang, Jihye Lee, Deok-Jin Jeon, Seungmuk Ji, Yong-Oock Kim, In-Sik Yun, Jong-Souk Yeo

Nanotopographic control of cell behavior offers great potential in designing biomimetic scaffolds for cell therapy. However, the behavior of cells on different nanotopographies is not fully understood. In this study, we investigated the effect of nanostructures on human adipose-derived stem cells (ASCs) by directly comparing nanopillar and nanopit arrays. Morphological changes, cell viability and early osteogenic differentiation of ASCs have been analyzed on the nanostructures. Nanopit arrays were found to increase cell areas and promote early osteogenic differentiation more than nanopillar arrays. Analysis of focal adhesion (FA) formation indicated a larger increase in total area as well as the number of FAs during cell spreading on nanopit arrays. The maturation of FA is related to cellular traction forces, which are known to stimulate osteogenic induction through the RhoA-ROCK pathway. We conclude that ASCs can spread more on the nanopit array than on the nanopillar array due to the presence of continuous adhesive paths on the nanopit array, which is associated with increased expression of RUNX2 as an early osteogenic marker. Our results suggest that a connected path in nanopit arrays plays a critical role in controlling stem cell behavior compared to nanopillar arrays. A comparative understanding of nanostructures can provide a guideline for designing an artificial substrate for osteogenesis and tissue engineering.

细胞行为的纳米形貌控制为细胞治疗仿生支架的设计提供了巨大的潜力。然而,细胞在不同纳米形貌上的行为尚不完全清楚。在这项研究中,我们通过直接比较纳米柱阵列和纳米颗粒阵列来研究纳米结构对人脂肪干细胞(ASCs)的影响。在纳米结构上分析了ASCs的形态变化、细胞活力和早期成骨分化。纳米柱阵列比纳米柱阵列更能增加细胞面积,促进早期成骨分化。对黏附灶(FA)形成的分析表明,细胞在纳米颗粒阵列上扩散过程中,黏附灶的总面积和数量都有较大的增加。FA的成熟与细胞牵引力有关,已知细胞牵引力通过RhoA-ROCK途径刺激成骨诱导。我们得出结论,由于纳米阵列上存在连续的粘附路径,ASCs在纳米it阵列上的扩散比在纳米柱阵列上的扩散更多,这与RUNX2(早期成骨标志物)的表达增加有关。我们的研究结果表明,与纳米柱阵列相比,纳米颗粒阵列中的连接路径在控制干细胞行为方面起着至关重要的作用。对纳米结构的比较理解可以为骨生成和组织工程人工基质的设计提供指导。
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引用次数: 0
Effective elimination of Moiré fringe at the nanoprecipitate/matrix interface 有效消除纳米沉淀/基体界面处的莫尔条纹
Q3 Immunology and Microbiology Pub Date : 2026-01-07 DOI: 10.1186/s42649-025-00121-7
Yoon-Uk Heo, Dongwon Lee, T. T. T. Trang, Changwan Hong

The effective method for eliminating the Moiré fringes in the MC nanoprecipitates in the austenite matrix was studied. Considering the dynamic diffraction between the matrix and precipitate, the spots originating from the Moiré pattern were selected in the fast Fourier transform (FFT) pattern. The Moiré fringe image was extracted by performing inverse FFT(IFFT) of the selected spots. Subtracting the Moiré fringe contribution from the original image intensity reveals the veiled lattice fringes of MC carbide in the austenite matrix. The image was compared and discussed with the IFFT image of the direct selection of the matrix + MC FFT patterns. The suggested method was applied to strain measurement in the MC carbide-containing area using the geometrical phase analysis. Compared with the result obtained from the raw image containing Moiré fringes, the applied method shows artifact-free strain distribution in the MC carbide. The process was applied to the inclined twin interface in BCC steel. The lattice fringe in the overlapping area shows a more detailed lattice feature. This novel study sheds light on the veiled crystal structure and strain distribution under various conditions where more than two lattice fringes overlap.

研究了消除奥氏体基体中MC纳米沉淀物中莫尔条纹的有效方法。考虑到基体与析出物之间的动态衍射,在快速傅里叶变换(FFT)图中选择了源自莫尔维尔图案的斑点。对选取的斑点进行逆FFT(inverse FFT, IFFT)提取莫尔条纹图像。从原始图像强度中减去莫尔条纹的贡献,显示出奥氏体基体中MC碳化物的遮挡晶格条纹。将图像与直接选择矩阵+ MC的FFT图像进行了比较和讨论。将该方法应用于MC含碳化物区域的几何相分析应变测量。与含有莫尔条纹的原始图像的结果相比,该方法显示了MC碳化物中无伪影的应变分布。将该工艺应用于BCC钢的斜孪晶界面。重叠区域的点阵条纹显示出更详细的点阵特征。这项新研究揭示了在两个以上晶格条纹重叠的各种条件下,遮掩晶体的结构和应变分布。
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引用次数: 0
Correlative x-ray microscopy and transmission electron microscopy for ultrastructural analysis of zebrafish tissue 相关x射线显微镜及透射电镜对斑马鱼组织超微结构的分析
Q3 Immunology and Microbiology Pub Date : 2025-12-27 DOI: 10.1186/s42649-025-00120-8
Sun-Yeong Gwon, MinKi Choi, Ji Young Mun

We established a correlative workflow combining X-ray microscopy (XRM) and transmission electron microscopy (TEM) to investigate the ultrastructure of zebrafish neuromasts. Zebrafish tissues were processed using conventional TEM embedding protocols and first imaged with XRM to obtain three-dimensional information and to localize the neuromast within resin blocks. The XRM previews enabled accurate trimming and rapid identification of target regions, reducing the need for repeated semi-thin sectioning and toluidine blue staining. Subsequent TEM analysis revealed ultrastructural details including cell-to-cell contacts and organelle morphology. Our study demonstrates that integration of XRM with TEM increases efficiency, minimizes tissue loss, and improves orientation accuracy for ultrastructural analysis. This correlative approach provides a valuable workflow for volume electron microscopy, applicable to the observation of the neuromast and various other tissues.

我们建立了结合x射线显微镜(XRM)和透射电镜(TEM)的相关工作流程来研究斑马鱼神经鞘的超微结构。斑马鱼组织使用传统的TEM嵌入协议进行处理,并首先使用XRM成像以获得三维信息并在树脂块内定位神经杆。XRM预览能够精确修剪和快速识别目标区域,减少重复半薄切片和甲苯胺蓝染色的需要。随后的TEM分析揭示了包括细胞间接触和细胞器形态在内的超微结构细节。我们的研究表明,XRM与TEM的结合提高了效率,最大限度地减少了组织损失,并提高了超微结构分析的定向精度。这种相关的方法为体积电子显微镜提供了一种有价值的工作流程,适用于观察神经肥大和各种其他组织。
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引用次数: 0
From a clinical case to a general methodology to analyze prosthetic joint failure, by micro- and nano-characterization with SEM of intra-tissue wear debris 从临床案例到一般方法分析假体关节失效,通过微观和纳米表征组织内磨损碎片的扫描电镜。
Q3 Immunology and Microbiology Pub Date : 2025-12-15 DOI: 10.1186/s42649-025-00118-2
Stefania Tarter, Lorena Maines, Giandomenico Nollo, Marco Molinari, Stefano Gialanella

Release of prosthesis debris at the tissue-implant interface is a major cause of aseptic loosening, a phenomenon that requires premature replacement of the prosthesis. The main objective of this paper is to propose a step-structured modus operandi for a reliable scanning electron microscopy (SEM) analysis of debris released from prostheses into the surrounding tissues. Following a proven methodology for the analysis of this wear debris would allow research and hospital laboratories to reduce time and obtain results associated with a common protocol and consequently, more comparable results. For developing the methodology, we chose the clinical case of a hip prosthetic revision, in which a Cr-Co head misalignment caused the wearing out of the polyethylene acetabular insert and a partial wear of the Ti-6Al-4 V acetabular cup. Samples of periprosthetic tissues, after being partially digested in a KOH basic solution, were investigated in vivo and in situ with SEM observations and Energy Dispersive X-rays Spectroscopy (EDXS) analyses. Although developed from a specific case study, this methodology is compatible and applicable to other standard cases as well. Regarding the set of samples we selected, a complete set of micro- and nano-structural analysis, compositional spectra and high-resolution images have been acquired, showing the morphology of the debris involved, and the agglomeration phenomena occurring in the tissue. The proposed protocol complements previous studies on tribological phenomena, underlying debris production at the tissue-prosthesis interface, best digestion techniques for fragment isolation, and nanotoxicology.

假体碎片在组织-种植体界面处的释放是无菌性松动的主要原因,这种现象需要提前更换假体。本文的主要目的是提出一种阶梯结构的操作方法,用于可靠的扫描电子显微镜(SEM)分析从假体释放到周围组织的碎片。采用一种经过验证的方法来分析这种磨损碎片,将使研究和医院实验室能够缩短时间并获得与共同方案相关的结果,从而获得更具可比性的结果。为了开发方法,我们选择了髋关节假体翻修的临床病例,其中Cr-Co头部错位导致聚乙烯髋臼插入物磨损和ti - 6al - 4v髋臼杯部分磨损。在KOH碱性溶液中部分消化后的假体周围组织样品,通过扫描电镜观察和能量色散x射线光谱(EDXS)分析在体内和原位进行了研究。虽然是从一个特定的案例研究中发展出来的,但这种方法也兼容并适用于其他标准案例。对于我们选择的这组样品,我们获得了一套完整的微观和纳米结构分析,成分光谱和高分辨率图像,显示了所涉及的碎片的形态,以及组织中发生的团聚现象。提出的方案补充了先前在摩擦学现象、组织-假体界面潜在碎片产生、碎片分离的最佳消化技术和纳米毒理学方面的研究。
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引用次数: 0
Development of electron ptychography from algorithms, detectors to its applications 从算法、检测器到应用的电子印刷技术的发展。
Q3 Immunology and Microbiology Pub Date : 2025-12-03 DOI: 10.1186/s42649-025-00119-1
Wonwoo Suh, Jeewon B. Choi, Keun-Yeol Park, Celesta S. Chang

Electron ptychography has emerged as a powerful computational imaging technique using four-dimensional scanning transmission electron microscopy, greatly exceeding the resolution limits of conventional electron microscopes by quantitative phase retrieval. This paper presents recent algorithmic developments and technological requirements for detectors used in electron ptychography, as well as applications in different fields of nanoscience. The application range covers high-resolution imaging of beam-sensitive specimens, light element detection, and three-dimensional reconstruction, making electron ptychography a versatile technique for materials characterization.

电子型图已经成为一种强大的计算成像技术,利用四维扫描透射电子显微镜,大大超过了传统电子显微镜定量相位检索的分辨率限制。本文介绍了用于电子型图的探测器的最新算法发展和技术要求,以及它们在纳米科学不同领域的应用。应用范围涵盖光束敏感样品的高分辨率成像,光元素检测和三维重建,使电子型图成为材料表征的通用技术。
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引用次数: 0
Anatomy and histology of the olfactory organ of Korean amur goby Rhinogobius brunneus (Gobiiformes, Gobiidae) 韩国虾虎鱼(虾虎目,虾虎科)嗅觉器官的解剖与组织学
Q3 Immunology and Microbiology Pub Date : 2025-11-29 DOI: 10.1186/s42649-025-00116-4
Hyun Tae Kim

This study investigated the anatomy and histology of the olfactory organ of the Korean amur goby Rhinogobius brunneus from Jeonjucheon stream. This species lives in shallow, stagnant, and intermittently low-oxygenated streams, reservoirs, and ponds affected by seasonal rainfall. Anatomically, its olfactory organ consisted of a short tubular anterior nostril, a posterior nostril, a single longitudinal lamella, and two accessory nasal sacs (ethmoidal and lacrymal sacs). Its single lamella structure resembles other gobiid fishes with a simplified olfactory surface. Histologically, the sensory epithelium comprised olfactory receptor neurons, supporting cells, and basal cells, while the non-sensory epithelium contained stratified epithelial cells, basal cells, and mucous cells. In particular, the mucous cells stained intensely red with Hematoxylin and eosin and Masson’s trichrome, indicating proteinaceous granular mucins rich in glycoproteins; such secretions likely protect the epithelium against particles, toxins, and low-oxygenated freshwater. Overall, the goby’s olfactory organ exhibits traits uniquely adapted to stagnant and hypoxic conditions.

本研究对全州川河北虾虎鱼(Rhinogobius brunneus)的嗅觉器官进行了解剖学和组织学研究。该物种生活在受季节性降雨影响的浅、停滞和间歇性低氧的溪流、水库和池塘中。解剖上,其嗅觉器官由一个短管状的前鼻孔、一个后鼻孔、一个单一的纵向鼻板和两个副鼻囊(筛囊和泪囊)组成。它的单片结构类似于其他的gobiid鱼,具有简化的嗅觉表面。组织学上,感觉上皮由嗅觉受体神经元、支持细胞和基底细胞组成,非感觉上皮由分层上皮细胞、基底细胞和黏液细胞组成。特别是,黏液细胞被苏木精、伊红和马松三色染成深红色,表明富含糖蛋白的蛋白颗粒黏液;这种分泌物可能保护上皮免受颗粒、毒素和低氧淡水的侵害。总的来说,虾虎鱼的嗅觉器官表现出独特的适应停滞和缺氧条件的特征。
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引用次数: 0
Electron diffraction and dark-field TEM for structural analysis of 2D van der Waals materials 二维范德华材料的电子衍射和暗场透射电镜结构分析。
Q3 Immunology and Microbiology Pub Date : 2025-11-11 DOI: 10.1186/s42649-025-00117-3
Byunghyun Kim, Daesung Park, Siwon Jeong, Hyobin Yoo

Two-dimensional (2D) van der Waals materials possess structural degrees of freedom that set them apart from conventional bulk crystals and strongly influence their physical properties. Such freedom, enabled by the weak interlayer bonding, permits stacking, twisting, and lateral sliding of layers, leading to structural variations such as out-of-plane corrugations, layer-number–dependent electronic and optical responses, and interlayer registry variations that produce stacking domains with distinct functionalities. Capturing and understanding these variations is essential for linking structure to function. Transmission electron microscopy (TEM) offers complementary approaches for this purpose: electron diffraction provides quantitative crystallographic fingerprints, while dark-field (DF) imaging translates selected diffraction information into spatial maps of local structure. When combined, these techniques can resolve complex structural modulations across multiple length scales and under diverse experimental conditions. Recent advances have extended diffraction and DF imaging into in-situ and operando regimes, enabling real-time observation of domain reconfiguration, phase transitions, and polarization switching under external stimuli. This review discusses how these methods are applied to 2D van der Waals materials to reveal structural degrees of freedom and illustrates their unique capability to directly connect structural evolution to functional behavior.

二维(2D)范德华材料具有结构自由度,使它们与传统的块状晶体区别开来,并强烈影响其物理性质。这种自由度是由弱层间键合实现的,允许层的堆叠、扭曲和横向滑动,导致结构变化,如面外波纹、层数相关的电子和光学响应,以及产生具有不同功能的堆叠域的层间注册表变化。捕捉和理解这些变化对于将结构与功能联系起来至关重要。透射电子显微镜(TEM)为这一目的提供了补充方法:电子衍射提供定量的晶体指纹,而暗场成像(DF)将选定的衍射信息转换为局部结构的空间图。当结合使用时,这些技术可以解决跨多个长度尺度和不同实验条件下的复杂结构调制。最近的进展已经将衍射和DF成像扩展到原位和操作状态,能够实时观察外部刺激下的畴重构、相变和极化开关。本文讨论了如何将这些方法应用于二维范德华材料以揭示结构自由度,并说明了它们直接将结构演变与功能行为联系起来的独特能力。
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引用次数: 0
Analysis of smart imaging runtime 智能成像运行时间分析
Q3 Immunology and Microbiology Pub Date : 2025-08-14 DOI: 10.1186/s42649-025-00115-5
Thomas Athey, Shashata Sawmya, Yaron Meirovitch, Richard Schalek, Pavel Potocek, Ishaan Chandok, Maurice Peemen, Jeff Lichtman, Aravinthan Samuel, Nir Shavit

Smart microscopy is a new imaging approach that involves rapid imaging, prediction of important subregions, then selective re-imaging. This approach has been validated in reducing imaging beam time in electron microscopy connectomics, but the speedup depends on various imaging workflow parameters. Here we present the first runtime analysis of traditional vs. smart microscopy and show how these parameters can magnify, or diminish potential time savings. We provide a GUI application that calculates the theoretical time savings of smart microscopy from user input parameters describing their imaging workflow. Finally, we measure end-to-end runtime of SmartEM acquisition on an electron microscope to demonstrate two strategies for faster acquisition: mixed-precision neural networks and parallelization of microscope and support computer operations.

智能显微镜是一种新的成像方法,包括快速成像,预测重要的子区域,然后选择性重新成像。该方法在减少电子显微镜连接组学成像光束时间方面得到了验证,但其加速速度取决于不同的成像工作流程参数。在这里,我们展示了传统显微镜与智能显微镜的首次运行时分析,并展示了这些参数如何放大或减少潜在的时间节省。我们提供了一个GUI应用程序,从用户输入描述其成像工作流程的参数中计算智能显微镜的理论时间节省。最后,我们在电子显微镜上测量了SmartEM采集的端到端运行时间,以演示两种更快的采集策略:混合精度神经网络和显微镜和支持计算机操作的并行化。
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引用次数: 0
Junctional microstructure of the non-sticky spiral scaffold in the golden orb web spider, Trichonephila clavata 金球蛛(Trichonephila clavata)非粘性螺旋支架的连接微结构。
Q3 Immunology and Microbiology Pub Date : 2025-07-17 DOI: 10.1186/s42649-025-00114-6
Seung-Min Lee, Myung-Jin Moon

The non-sticky spiral silk, which typically serves as a temporary structural component in most orb-weaving spiders, functions as a permanent scaffold in the golden orb-web spider (Trichonephila clavata). Composed of double strands approximately 4 μm in diameter, the non-sticky spiral forms robust extended junctions exceeding 200 μm in radius. The muscular cell layer observed within the pyriform gland facilitates the active extrusion of pyriform fibers and cement, enabling efficient wrapping at the junctions. These robust junctions stand in stark contrast to the loose, droplet-mediated adhesion seen in sticky spirals, allowing the non-sticky spiral to enhance web stability and effectively prevent damage expansion. Furthermore, the non-sticky spiral plays an important role in localized web repair by replicating the original web's loop patterns to restore damaged areas. These findings suggest that the non-sticky spiral stabilizes the wide intervals between radii in the lower hub region, providing enhanced resistance to external forces and repairing structural damages. The results also demonstrate the evolutionary significance of utilizing non-sticky spiral as a permanent component, facilitating the construction and maintenance of large, densely structured orb webs.

这种不粘的螺旋丝,通常是大多数圆网蜘蛛的临时结构部件,在金圆网蜘蛛(Trichonephila clavata)中起着永久支架的作用。非粘性螺旋由直径约4 μm的双链组成,形成半径超过200 μm的坚固延伸结。梨状腺内观察到的肌细胞层促进梨状纤维和骨水泥的主动挤压,使结合处有效包裹。这些坚固的连接与粘性螺旋中松散的液滴介导的粘附形成鲜明对比,使非粘性螺旋增强了网的稳定性,并有效地防止了损伤的扩展。此外,非粘性螺旋在局部织网修复中发挥重要作用,通过复制原始织网的循环模式来修复受损区域。这些发现表明,非粘性螺旋稳定了较低轮毂区域半径之间的宽间隔,增强了对外力的抵抗力并修复了结构损伤。研究结果还表明,利用非粘性螺旋作为永久成分,有利于大型、密集结构的蛛网的构建和维护,具有重要的进化意义。
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引用次数: 0
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