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Biological applications of the NanoSuit for electron imaging and X-microanalysis of insulating specimens NanoSuit在绝缘样品的电子成像和x微分析中的生物学应用
Q3 Immunology and Microbiology Pub Date : 2022-05-11 DOI: 10.1186/s42649-022-00073-2
Ki Woo Kim
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引用次数: 0
Biological applications of the NanoSuit for electron imaging and X-microanalysis of insulating specimens NanoSuit在绝缘样品的电子成像和x微分析中的生物学应用
Q3 Immunology and Microbiology Pub Date : 2022-05-11 DOI: 10.1186/s42649-022-00073-2
Ki Woo Kim

Field emission scanning electron microscopy (FESEM) is an essential tool for observing surface details of specimens in a high vacuum. A series of specimen procedures precludes the observations of living organisms, resulting in artifacts. To overcome these problems, Takahiko Hariyama and his colleagues proposed the concept of the “nanosuit” later referred to as “NanoSuit”, describing a thin polymer layer placed on organisms to protect them in a high vacuum in 2013. The NanoSuit is formed rapidly by (i) electron beam irradiation, (ii) plasma irradiation, (iii) Tween 20 solution immersion, and (iv) surface shield enhancer (SSE) solution immersion. Without chemical fixation and metal coating, the NanoSuit-formed specimens allowed structural preservation and accurate element detection of insulating, wet specimens at high spatial resolution. NanoSuit-formed larvae were able to resume normal growth following FESEM observation. The method has been employed to observe unfixed and uncoated bacteria, multicellular organisms, and paraffin sections. These results suggest that the NanoSuit can be applied to prolong life in vacuo and overcome the limit of dead imaging of electron microscopy.

场发射扫描电子显微镜(FESEM)是在高真空条件下观察样品表面细节的重要工具。一系列的标本程序排除了对活生物体的观察,导致人工制品。为了克服这些问题,Takahiko Hariyama和他的同事们在2013年提出了“纳米服”(后来被称为“纳米服”)的概念,描述了一种薄薄的聚合物层,可以在高真空环境下保护生物体。NanoSuit通过(i)电子束照射,(ii)等离子体照射,(iii) Tween 20溶液浸泡和(iv)表面屏蔽增强剂(SSE)溶液浸泡快速形成。在没有化学固定和金属涂层的情况下,nanosuit形成的样品可以在高空间分辨率下进行结构保存和准确的绝缘湿样品元素检测。通过FESEM观察,nanosuit形成的幼虫能够恢复正常生长。该方法已用于观察未固定和未包被的细菌、多细胞生物和石蜡切片。这些结果表明,NanoSuit可以用于延长真空寿命,克服电子显微镜死成像的限制。
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引用次数: 0
Analysis of microstructural characteristics and components of red and yellow ink pigments used in permanent makeup 永久彩妆用红、黄油墨颜料的显微结构特征及成分分析
Q3 Immunology and Microbiology Pub Date : 2022-04-11 DOI: 10.1186/s42649-022-00072-3
Hyun Sook Jin, Byung Soo Chang

Our purpose in this study is to analyze the microstructural characteristics and constituent elements of inorganic substances added to the yellow ink and red ink pigments used in permanent makeup. We observed the microstructural properties of inorganic pigments added to the ink using a scanning electron microscopy (SEM) and analyzed the constituent elements of the inorganic pigment particles using an energy dispersive X-ray spectroscopy (EDX). In red wine-colored ink, cubic titanium dioxide with a diameter of 110 to 200 nm was the major component, and rod-shaped iron oxide was rarely observed. Most of the ingredients of taupe yellow ink were rod-shaped yellow iron oxide, and a small amount of cubic titanium dioxide was observed. Red wine-colored ink and taupe yellow ink contained lumps composed of titanium dioxide particles. In red wine-colored ink, lumps were formed by agglomeration. However, we observed that the surface of the lump composed of titanium dioxide in the taupe yellow ink had a smooth surface caused by external physical compression. The titanium dioxide particle mass which found in taupe yellow ink in this study is an artificial product. When this mass accumulates in the dermis, it may cause a color mismatch. Therefore, permanent makeup using fine pigments should be free of foreign substances that may cause trouble in the skin. In addition, there is a need to improve the quality of the ink so that the required color can be safe and long lasting in the dermis.

本研究的目的是分析永久彩妆用黄墨和红墨颜料中添加的无机物的微观结构特征和组成元素。利用扫描电子显微镜(SEM)观察了添加到油墨中的无机颜料的微观结构特性,并利用能量色散x射线能谱(EDX)分析了无机颜料颗粒的组成元素。在红酒墨水中,主要成分是直径为110 ~ 200nm的立方二氧化钛,很少观察到棒状的氧化铁。灰黄色油墨的主要成分是棒状的黄色氧化铁,并观察到少量的立方二氧化钛。红色墨水和灰黄色墨水中含有由二氧化钛颗粒组成的块状物。在红酒色的墨水中,团块是通过凝聚形成的。然而,我们观察到灰黄色油墨中由二氧化钛组成的块状表面由于外部物理压缩而具有光滑的表面。本研究在灰黄色油墨中发现的二氧化钛颗粒质量是一种人工产物。当这种物质积聚在真皮层时,可能会导致颜色不匹配。因此,使用精细色素的永久化妆品应该不含可能对皮肤造成麻烦的外来物质。此外,还需要提高油墨的质量,使所要求的颜色能够在真皮层中安全持久。
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引用次数: 3
Microstructure analysis of 8 μm electrolytic Cu foil in plane view using EBSD and TEM 利用EBSD和TEM分析8 μm电解铜箔的平面微观结构
Q3 Immunology and Microbiology Pub Date : 2022-03-28 DOI: 10.1186/s42649-022-00071-4
Myeongjin Kim, Hyun Soon Park

With the lightening of the mobile devices, thinning of electrolytic copper foil, which is mainly used as an anode collection of lithium secondary batteries, is needed. As the copper foil becomes ultrathin, mechanical properties such as deterioration of elongation rate and tear phenomenon are occurring, which is closely related to microstructure. However, there is a problem that it is not easy to prepare and observe specimens in the analysis of the microstructure of ultrathin copper foil. In this study, electron backscatter diffraction (EBSD) specimens were fabricated using only mechanical polishing to analyze the microstructure of 8 μm thick electrolytic copper foil in plane view. In addition, EBSD maps and transmission electron microscopy (TEM) images were compared and analyzed to find the optimal cleanup technique for properly correcting errors in EBSD maps.

随着移动设备的轻量化,需要对主要用作锂二次电池阳极收集的电解铜箔进行减薄处理。随着铜箔的超薄化,会出现伸长率变差、撕裂等力学性能,这与微观组织密切相关。但是,在超薄铜箔的微观结构分析中,存在不易制备和观察试样的问题。采用机械抛光法制备电子背散射衍射(EBSD)试样,对8 μm厚电解铜箔的平面微观结构进行了分析。此外,还比较分析了EBSD图和透射电子显微镜(TEM)图像,以寻找最佳的清除技术来正确纠正EBSD图中的错误。
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引用次数: 1
Automated measurement and analysis of sidewall roughness using three-dimensional atomic force microscopy 利用三维原子力显微镜自动测量和分析侧壁粗糙度
Q3 Immunology and Microbiology Pub Date : 2022-03-08 DOI: 10.1186/s42649-022-00070-5
Su-Been Yoo, Seong-Hun Yun, Ah-Jin Jo, Sang-Joon Cho, Haneol Cho, Jun-Ho Lee, Byoung-Woon Ahn

As semiconductor device architecture develops, from planar field-effect transistors (FET) to FinFET and gate-all-around (GAA), there is an increased need to measure 3D structure sidewalls precisely. Here, we present a 3-Dimensional Atomic Force Microscope (3D-AFM), a powerful 3D metrology tool to measure the sidewall roughness (SWR) of vertical and undercut structures. First, we measured three different dies repeatedly to calculate reproducibility in die level. Reproducible results were derived with a relative standard deviation under 2%. Second, we measured 13 different dies, including the center and edge of the wafer, to analyze SWR distribution in wafer level and reliable results were measured. All analysis was performed using a novel algorithm, including auto flattening, sidewall detection, and SWR calculation. In addition, SWR automatic analysis software was implemented to reduce analysis time and to provide standard analysis. The results suggest that our 3D-AFM, based on the tilted Z scanner, will enable an advanced methodology for automated 3D measurement and analysis.

随着半导体器件架构的发展,从平面场效应晶体管(FET)到FinFET和栅极全能(GAA),精确测量三维结构侧壁的需求越来越大。在这里,我们提出了一种三维原子力显微镜(3D- afm),一种强大的三维测量工具,用于测量垂直和下切结构的侧壁粗糙度(SWR)。首先,我们反复测量了三种不同的模具,以计算模具水平的再现性。结果重复性好,相对标准偏差小于2%。其次,我们测量了13个不同的芯片,包括晶圆中心和边缘,分析了晶圆级的SWR分布,并测量了可靠的结果。所有的分析都使用了一种新颖的算法,包括自动压平、侧壁检测和SWR计算。此外,实现了SWR自动分析软件,以减少分析时间并提供标准分析。结果表明,基于倾斜Z型扫描仪的3D- afm将为自动化3D测量和分析提供先进的方法。
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引用次数: 1
Ultrastructural changes in cristae of lymphoblasts in acute lymphoblastic leukemia parallel alterations in biogenesis markers 急性淋巴细胞白血病淋巴母细胞嵴的超微结构变化与生物生成标志物的变化并行不悖
Q3 Immunology and Microbiology Pub Date : 2021-12-29 DOI: 10.1186/s42649-021-00069-4
Ritika Singh, Ayushi Jain, Jayanth Kumar Palanichamy, T. C. Nag, Sameer Bakhshi, Archna Singh

We explored the link between mitochondrial biogenesis and mitochondrial morphology using transmission electron microscopy (TEM) in lymphoblasts of pediatric acute lymphoblastic leukemia (ALL) patients and compared these characteristics between tumors and control samples. Gene expression of mitochondrial biogenesis markers was analysed in 23 ALL patients and 18 controls and TEM for morphology analysis was done in 15 ALL patients and 9 healthy controls. The area occupied by mitochondria per cell and the cristae cross-sectional area was observed to be significantly higher in patients than in controls (p-value = 0.0468 and p-value< 0.0001, respectively). The mtDNA copy numbers, TFAM, POLG, and c-myc gene expression were significantly higher in ALL patients than controls (all p-values< 0.01). Gene Expression of PGC-1α was higher in tumor samples. The analysis of the correlation between PGC-1α expression and morphology parameters i.e., both M/C ratio and cristae cross-sectional area revealed a positive trend (r = 0.3, p = 0.1). The increased area occupied by mitochondria and increased cristae area support the occurrence of cristae remodelling in ALL. These changes might reflect alterations in cristae dynamics to support the metabolic state of the cells by forming a more condensed network. Ultrastructural imaging can be useful for affirming changes occurring at a subcellular organellar level.

我们利用透射电子显微镜(TEM)探讨了小儿急性淋巴细胞白血病(ALL)患者淋巴母细胞线粒体生物发生与线粒体形态之间的联系,并比较了肿瘤与对照样本之间的这些特征。对23名ALL患者和18名对照组进行了线粒体生物生成标记基因表达分析,对15名ALL患者和9名健康对照组进行了TEM形态分析。观察发现,患者每个细胞的线粒体所占面积和嵴横截面积明显高于对照组(p-value = 0.0468 和 p-value<0.0001)。ALL患者的mtDNA拷贝数、TFAM、POLG和c-myc基因表达均明显高于对照组(所有p值均为0.01)。肿瘤样本中 PGC-1α 的基因表达量较高。PGC-1α表达与形态学参数(即M/C比和嵴横截面积)之间的相关性分析显示出正趋势(r = 0.3,p = 0.1)。线粒体所占面积的增加和嵴面积的增加支持了嵴重塑在 ALL 中的发生。这些变化可能反映了嵴动态的改变,通过形成更紧密的网络来支持细胞的代谢状态。超微结构成像可用于确认亚细胞器水平发生的变化。
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引用次数: 0
TEM sample preparation of microsized LiMn2O4 powder using an ion slicer 使用离子切片机制备微小尺寸锰酸锂粉末的 TEM 样品
Q3 Immunology and Microbiology Pub Date : 2021-12-23 DOI: 10.1186/s42649-021-00068-5
Jung Sik Park, Yoon-Jung Kang, Sun Eui Choi, Yong Nam Jo

The main purpose of this paper is the preparation of transmission electron microscopy (TEM) samples from the microsized powders of lithium-ion secondary batteries. To avoid artefacts during TEM sample preparation, the use of ion slicer milling for thinning and maintaining the intrinsic structure is described. Argon-ion milling techniques have been widely examined to make optimal specimens, thereby making TEM analysis more reliable. In the past few years, the correction of spherical aberration (Cs) in scanning transmission electron microscopy (STEM) has been developing rapidly, which results in direct observation at an atomic level resolution not only at a high acceleration voltage but also at a deaccelerated voltage. In particular, low-kV application has markedly increased, which requires a sufficiently transparent specimen without structural distortion during the sample preparation process. In this study, sample preparation for high-resolution STEM observation is accomplished, and investigations on the crystal integrity are carried out by Cs-corrected STEM.

本文的主要目的是利用锂离子二次电池的微小粉末制备透射电子显微镜(TEM)样品。为了避免 TEM 样品制备过程中产生人工痕迹,本文介绍了使用离子切片机铣削来减薄和保持固有结构的方法。氩离子铣削技术已被广泛用于制作最佳试样,从而使 TEM 分析更加可靠。在过去的几年中,扫描透射电子显微镜(STEM)中的球差(Cs)校正技术发展迅速,不仅在高加速电压下,而且在去加速电压下都能直接观察到原子级分辨率。尤其是低 kV 的应用显著增加,这就要求在样品制备过程中,试样具有足够的透明度,且不发生结构变形。本研究完成了用于高分辨率 STEM 观察的样品制备,并通过铯校正 STEM 对晶体完整性进行了研究。
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引用次数: 0
Hair microscopy: an easy adjunct to diagnosis of systemic diseases in children 毛发显微镜:诊断儿童全身性疾病的简便辅助方法
Q3 Immunology and Microbiology Pub Date : 2021-11-29 DOI: 10.1186/s42649-021-00067-6
Dharmagat Bhattarai, Aaqib Zaffar Banday, Rohit Sadanand, Kanika Arora, Gurjit Kaur, Satish Sharma, Amit Rawat

Hair, having distinct stages of growth, is a dynamic component of the integumentary system. Nonetheless, derangement in its structure and growth pattern often provides vital clues for the diagnosis of systemic diseases. Assessment of the hair structure by various microscopy techniques is, hence, a valuable tool for the diagnosis of several systemic and cutaneous disorders. Systemic illnesses like Comel-Netherton syndrome, Griscelli syndrome, Chediak Higashi syndrome, and Menkes disease display pathognomonic findings on hair microscopy which, consequently, provide crucial evidence for disease diagnosis. With minimal training, light microscopy of the hair can easily be performed even by clinicians and other health care providers which can, thus, serve as a useful tool for disease diagnosis at the patient’s bedside. This is especially true for resource-constrained settings where access and availability of advanced investigations (like molecular diagnostics) is a major constraint. Despite its immense clinical utility and non-invasive nature, hair microscopy seems to be an underutilized diagnostic modality. Lack of awareness regarding the important findings on hair microscopy may be one of the crucial reasons for its underutilization. Herein, we, therefore, present a comprehensive overview of the available methods for hair microscopy and the pertinent findings that can be observed in various diseases.

毛发具有不同的生长阶段,是人体皮肤系统的一个动态组成部分。然而,毛发结构和生长模式的异常往往能为全身性疾病的诊断提供重要线索。因此,通过各种显微镜技术评估毛发结构是诊断多种全身性疾病和皮肤疾病的重要工具。科梅尔-奈瑟顿综合征、格里斯切利综合征、切迪亚克-东综合征和门克氏症等全身性疾病在毛发显微镜下会显示出病理特征,从而为疾病诊断提供重要证据。即使是临床医生和其他医疗服务提供者,只需经过简单的培训,也可以轻松地对头发进行光学显微镜检查,因此可以作为在病人床边诊断疾病的有用工具。尤其是在资源有限的环境中,先进检查(如分子诊断)的获取和可用性是一个主要制约因素。尽管毛发显微镜具有巨大的临床实用性和非侵入性,但似乎仍是一种未得到充分利用的诊断方式。对头发显微镜检查的重要发现缺乏了解可能是导致其利用率不足的重要原因之一。因此,我们在此全面概述头发显微镜检查的可用方法以及在各种疾病中可观察到的相关发现。
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引用次数: 0
Role of Cel5H protein surface amino acids in binding with clay minerals and measurements of its forces Cel5H 蛋白质表面氨基酸在与粘土矿物结合中的作用及其作用力测量
Q3 Immunology and Microbiology Pub Date : 2021-11-11 DOI: 10.1186/s42649-021-00066-7
Renukaradhya K. Math, Nagakumar Bharatham, Palaksha K. Javaregowda, Han Dae Yun

Our previous study on the binding activity between Cel5H and clay minerals showed highest binding efficiency among other cellulase enzymes cloned. Here, based on previous studies, we hypothesized that the positive amino acids on the surface of Cel5H protein may play an important role in binding to clay surfaces. To examine this, protein sequences of Bacillus licheniformis Cel5H (BlCel5H) and Paenibacillus polymyxa Cel5A (PpCel5A) were analyzed and then selected amino acids were mutated. These mutated proteins were investigated for binding activity and force measurement via atomic force microscopy (AFM). A total of seven amino acids which are only present in BlCel5H but not in PpCel5A were selected for mutational studies and the positive residues which are present in both were omitted. Of the seven selected surface lysine residues, only three mutants K196A(M2), K54A(M3) and K157T(M4) showed 12%, 7% and 8% less clay mineral binding ability, respectively compared with wild-type. The probable reason why other mutants did not show altered binding efficiency might be due to relative location of amino acids on the protein surface. Meanwhile, measurement of adhesion forces on mica sheets showed a well-defined maximum at 69 ± 19 pN for wild-type, 58 ± 19 pN for M2, 53 ± 19 pN for M3, and 49 ± 19 pN for M4 proteins. Hence, our results demonstrated that relative location of surface amino acids of Cel5H protein especially positive charged amino acids are important in the process of clay mineral-protein binding interaction through electrostatic exchange of charges.

我们之前关于 Cel5H 与粘土矿物之间结合活性的研究表明,在克隆的其他纤维素酶中,Cel5H 的结合效率最高。在此,基于之前的研究,我们假设 Cel5H 蛋白表面的正氨基酸可能在与粘土表面的结合中发挥了重要作用。为了研究这一点,我们分析了地衣芽孢杆菌 Cel5H(BlCel5H)和多粘芽孢杆菌 Cel5A(PpCel5A)的蛋白质序列,然后对选定的氨基酸进行了突变。通过原子力显微镜(AFM)对这些突变蛋白质的结合活性和力测量进行了研究。总共选择了 7 个只存在于 BlCel5H 而不存在于 PpCel5A 的氨基酸进行突变研究,而同时存在于两者的阳性残基则被省略。在所选的七个表面赖氨酸残基中,只有 K196A(M2)、K54A(M3) 和 K157T(M4) 三个突变体与野生型相比,粘土矿物结合能力分别降低了 12%、7% 和 8%。其他突变体之所以没有表现出结合效率的改变,可能与蛋白质表面氨基酸的相对位置有关。同时,对云母片上粘附力的测量显示,野生型蛋白的最大粘附力为 69 ± 19 pN,M2 为 58 ± 19 pN,M3 为 53 ± 19 pN,M4 为 49 ± 19 pN。因此,我们的研究结果表明,Cel5H 蛋白表面氨基酸的相对位置,尤其是带正电荷的氨基酸,在粘土矿物与蛋白质通过静电电荷交换结合相互作用的过程中非常重要。
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引用次数: 0
Some living eukaryotes during and after scanning electron microscopy 扫描电子显微镜观察期间和观察之后的一些真核生物
Q3 Immunology and Microbiology Pub Date : 2021-11-04 DOI: 10.1186/s42649-021-00065-8
Ki Woo Kim

Electron microscopy (EM) is an essential imaging method in biological sciences. Since biological specimens are exposed to radiation and vacuum conditions during EM observations, they die due to chemical bond breakage and desiccation. However, some organisms belonging to the taxa of bacteria, fungi, plants, and animals (including beetles, ticks, and tardigrades) have been reported to survive hostile scanning EM (SEM) conditions since the onset of EM. The surviving organisms were observed (i) without chemical fixation, (ii) after mounting to a precooled cold stage, (iii) using cryo-SEM, or (iv) after coating with a thin polymer layer, respectively. Combined use of these techniques may provide a better condition for preservation and live imaging of multicellular organisms for a long time beyond live-cell EM.

电子显微镜(EM)是生物科学中必不可少的成像方法。由于生物标本在电子显微镜观察过程中暴露在辐射和真空条件下,会因化学键断裂和干燥而死亡。不过,据报道,自电磁学问世以来,一些属于细菌、真菌、植物和动物类群的生物(包括甲虫、蜱和沙丁鱼)在敌意扫描电磁(SEM)条件下仍能存活。这些存活的生物体分别是:(i) 未经化学固定;(ii) 安装到预冷的冷台上;(iii) 使用低温扫描电子显微镜;或 (iv) 涂上一层薄聚合物。这些技术的结合使用可为多细胞生物的长期保存和活体成像提供更好的条件,而不仅仅是活细胞电磁成像。
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引用次数: 0
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