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Histology and morphometry of the skin of purple spaghetti-eel Moringua raitaborua (Anguilliformes, Moringuidae) 紫鳗(Anguilliformes,Moringuaraitaborua)皮的组织学和形态计量学。
Q3 Immunology and Microbiology Pub Date : 2023-10-31 DOI: 10.1186/s42649-023-00093-6
Hyun-Tae Kim

The purple spaghetti-eel Moringua raitaborua lives on the sandy or muddy bottoms of estuaries, which are subject to rapid and wide changes in salinity, pH, and osmoregulatory and hypoxic conditions due to the influx of organic materials from sources of freshwater. The species has adapted to hypoxic environments by developing a thicker epidermis with stratified polygonal cells, club cells, two types of mucous cells (goblet and, oval cells), stratified cuboidal cells and dermis with abundant blood capillaries. Among them, histological modification of thinner dorsal, lateral, and ventral body skin to include abundant capillaries and well-developed dermal vascularization may provide cutaneous respiration, permitting survival in brackish waters with low levels of oxygen and variable environmental parameters.

紫色意大利面鳗Moringua raitaborua生活在河口的沙质或泥质底部,由于淡水来源的有机物质的流入,河口的盐度、pH值、渗透调节和缺氧条件会发生快速而广泛的变化。该物种通过发育具有分层多边形细胞、俱乐部细胞、两种类型的粘液细胞(杯状细胞和椭圆形细胞)、分层立方体细胞和具有丰富毛细血管的真皮的较厚表皮来适应缺氧环境。其中,对较薄的背部、侧面和腹部皮肤进行组织学修饰,包括丰富的毛细血管和发育良好的真皮血管化,可以提供皮肤呼吸,使其能够在低氧和可变环境参数的微咸水中生存。
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引用次数: 0
Three-dimensional reconstruction of Y-IrNi rhombic dodecahedron nanoframe by STEM/EDS tomography Y-IrNi菱形十二面体纳米框架的STEM/EDS断层扫描三维重建。
Q3 Immunology and Microbiology Pub Date : 2023-09-21 DOI: 10.1186/s42649-023-00092-7
Taekyung Kim, Yongsang Lee, Yongju Hong, Kwangyeol Lee, Hionsuck Baik

The structural analysis of nanocrystals via transmission electron microscopy (TEM) is a valuable technique for the material science field. Recently, two-dimensional images by scanning TEM (STEM) and energy-dispersive X-ray spectroscopy (EDS) have successfully extended to three-dimensional (3D) imaging by tomography. However, despite improving TEM instruments and measurement techniques, detector shadowing, the missing-wedge problem, X-ray absorption effects, etc., significant challenges still remain; therefore, the various required corrections should be considered and applied when performing quantitative tomography. Nonetheless, this 3D reconstruction technique can facilitate active site analysis and the development of nanocatalyst systems, such as water electrolysis and fuel cell. Herein, we present a 3D reconstruction technique to obtain tomograms of IrNi rhombic dodecahedral nanoframes (IrNi-RFs) from STEM and EDS images by applying simultaneous iterative reconstruction technique and total variation minimization algorithms. From characterizing the morphology and spatial chemical composition of the Ir and Ni atoms in the nanoframes, we were able to infer the origin of the physical and catalytic durability of IrNi-RFs. Also, by calculating the surface area and volume of the 3D reconstructed model, we were able to quantify the Ir-to-Ni composition ratio and compare it to the EDS measurement result.

通过透射电子显微镜(TEM)对纳米晶体进行结构分析是材料科学领域的一项有价值的技术。最近,通过扫描TEM(STEM)和能量色散X射线光谱(EDS)的二维图像已经成功地扩展到通过断层扫描的三维(3D)成像。然而,尽管改进了TEM仪器和测量技术、探测器阴影、缺楔问题、X射线吸收效应等,但仍然存在重大挑战;因此,在进行定量断层扫描时,应考虑并应用各种所需的校正。尽管如此,这种3D重建技术可以促进活性位点分析和纳米催化剂系统的开发,如水电解和燃料电池。在此,我们提出了一种3D重建技术,通过应用同时迭代重建技术和总变异最小化算法,从STEM和EDS图像中获得IrNi菱形十二面体纳米框架(IrNi RF)的断层图。通过表征纳米框架中Ir和Ni原子的形态和空间化学组成,我们能够推断出IrNi RF的物理和催化耐久性的起源。此外,通过计算3D重建模型的表面积和体积,我们能够量化Ir与Ni的组成比,并将其与EDS测量结果进行比较。
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引用次数: 0
Standardizing HER2 immunohistochemistry assessment: calibration of color and intensity variation in whole slide imaging caused by staining and scanning 标准化HER2免疫组织化学评估:校正染色和扫描引起的全片成像的颜色和强度变化
Q3 Immunology and Microbiology Pub Date : 2023-09-14 DOI: 10.1186/s42649-023-00091-8
Chie Ohnishi, Takashi Ohnishi, Peter Ntiamoah, Dara S. Ross, Masahiro Yamaguchi, Yukako Yagi

In the evaluation of human epidermal growth factor receptor 2 (HER2) immunohistochemistry (IHC) — one of the standard biomarkers for breast cancer— visual assessment is laborious and subjective. Image analysis using whole slide image (WSI) could produce more consistent results; however, color variability in WSIs due to the choice of stain and scanning processes may impact image analysis. We therefore developed a calibration protocol to diminish the staining and scanning variations of WSI using two calibrator slides. The IHC calibrator slide (IHC-CS) contains peptide-coated microbeads with different concentrations. The color distribution obtained from the WSI of stained IHC-CS reflects the staining process and scanner characteristics. A color chart slide (CCS) is also useful for calibrating the color variation due to the scanner. The results of the automated HER2 assessment were compared to confirm the effectiveness of two calibration slides. The IHC-CS and HER2 breast cancer cases were stained on different days. All stained slides and CCS were digitized by two different WSI scanners. Results revealed 100% concordance between automated evaluation and the pathologist’s assessment with both the scanner and staining calibration. The proposed method may enable consistent evaluation of HER2.

人表皮生长因子受体2 (HER2)免疫组织化学(IHC)是乳腺癌的标准生物标志物之一,在评估中,视觉评估是费力和主观的。使用全幻灯片图像(WSI)进行图像分析可以得到更一致的结果;然而,由于染色和扫描过程的选择,wsi的颜色变化可能会影响图像分析。因此,我们开发了一种校准方案,以减少使用两个校准载玻片的WSI染色和扫描变化。IHC校定剂载玻片(IHC- cs)含有不同浓度的肽包被微珠。IHC-CS染色WSI得到的颜色分布反映了染色过程和扫描仪特征。彩色图表幻灯片(CCS)对于校准由于扫描仪引起的颜色变化也很有用。将自动HER2评估结果进行比较,以确认两种校准载玻片的有效性。IHC-CS和HER2乳腺癌患者在不同时间进行染色。所有染色的载玻片和CCS通过两台不同的WSI扫描仪进行数字化处理。结果显示,自动评估和病理学家的评估与扫描仪和染色校准100%一致。所提出的方法可以实现HER2的一致性评估。
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引用次数: 0
Anti-obesity effects of yuja (Citrus junos Sieb ex Tanaka) pomace extract fermented with lactic acid bacteria on the hepatocytes and epididymal fat tissue of rats 乳酸菌发酵玉子渣提取物对大鼠肝细胞和附睾脂肪组织的抗肥胖作用
Q3 Immunology and Microbiology Pub Date : 2023-08-09 DOI: 10.1186/s42649-023-00090-9
Han-Na Chu, Haeng-Ran Kim, Kyeong-A. Jang, Yu-Jin Hwang, Jeong-Sang Kim

This study investigated the anti-obesity effects of yuja pomace extract fermented with lactic acid bacteria in rats with high-fat diet-induced obesity over a period of eight weeks. Epididymal fat cell size was significantly smaller, by about 33%, in the treatment groups given yuja pomace extract fermented with lactic acid bacteria compared to the CON group. Electron microscopic observation of hepatocyte microstructure showed that the number of lipid droplets was lower in hepatocytes, the number of mitochondria was higher, along with distinct cristae, and the rough endoplasmic reticula were well developed with stacks of cisternae and ribosomes. Thus, it is believed that yuja pomace extract fermented with lactic acid bacteria, by influencing body weight and lipid accumulation, is effective in the prevention and treatment of obesity.

本研究以乳酸菌发酵的玉子果渣提取物为研究对象,观察其对高脂饮食性肥胖大鼠8周的抗肥胖作用。乳酸菌发酵鱼子渣提取物处理组与对照组相比,附睾脂肪细胞大小显著减小,约33%。电镜观察肝细胞微结构显示,肝细胞内脂滴数量较少,线粒体数量较多,嵴明显,粗面内质网发育良好,池池和核糖体堆积。由此可见,乳酸菌发酵的玉子渣提取物通过影响体重和脂质积累,具有防治肥胖的作用。
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引用次数: 0
Fine structural characteristics of the chorionic microspheres on the egg surface of the orb web spider Trichonephila clavata 球蛛卵表面绒毛膜微球的精细结构特征
Q3 Immunology and Microbiology Pub Date : 2023-07-18 DOI: 10.1186/s42649-023-00087-4
Seung-Min Lee, Myung-Jin Moon

The eggs laid by the orb web spider Trichonephila clavata must overwinter in bitterly freezing and dry conditions before hatching, but there does not seem to be any protection like a compact silk case covering the entire eggmass. Instead, the surface of the eggmass is completely coated with a milky coating called chorionic microspheres (CM). Therefore, we investigated the fine structural characteristics of CM to demonstrate their ecological importance. Although the diameter of CM in outer eggmass exhibits a significant variation, the chorionic surface is coated with a single layer of CM, characterized by a consistent diameter of approximately 2.3 µm. The surface structure of aggregated CM shows short papillary projections demonstrating segmental adhesion of mucous components. CM is insoluble in water but partially soluble in anhydrous ethanol, and its spherical structure is completely decomposed by hexafluoroisopropanol (HFIP), a strong organic solvent. Since our fine structural observations clearly show that CM is not derived from vitellogenic or choriogenetic processes, the CM adhesive coatings during ovipositional process appears to be equivalent to cocoon silk for various protective functions in silken eggcase.

圆网蜘蛛Trichonephila clavata所产的卵在孵化前必须在极度寒冷和干燥的条件下过冬,但似乎没有任何像覆盖整个卵群的紧密丝壳那样的保护。相反,卵团的表面完全被一种叫做绒毛膜微球(CM)的乳白色涂层所覆盖。因此,我们研究了CM的精细结构特征,以证明其生态重要性。尽管卵团外层CM的直径变化很大,但绒毛膜表面覆盖着一层CM,其直径约为2.3µm。聚集CM的表面结构显示短的乳头状突起,显示黏液成分的节段性粘附。CM不溶于水,部分溶于无水乙醇,其球形结构被强有机溶剂六氟异丙醇(HFIP)完全分解。由于我们的精细结构观察清楚地表明,CM不是来自卵黄形成或绒毛膜形成过程,因此在产卵过程中,CM的粘附涂层似乎相当于蚕丝,在丝状卵壳中具有各种保护功能。
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引用次数: 0
Recent progress in the role of grain boundaries in two-dimensional transition metal dichalcogenides studied using scanning tunneling microscopy/spectroscopy 扫描隧道显微镜/光谱学研究二维过渡金属二硫族化合物中晶界作用的最新进展
Q3 Immunology and Microbiology Pub Date : 2023-07-17 DOI: 10.1186/s42649-023-00088-3
Hyo Won Kim

Grain boundaries (GBs) are one- or two-dimensional (2D) defects, which are universal in crystals and play a crucial role in determining their mechanical, electrical, optical, and thermoelectric properties. In general, GBs tend to decrease electrical or thermal conductivity, and consequently degrade the performance of devices. However, the unusual characteristics of GBs have led to the production of a new class of memristors with 2D semiconducting transition metal dichalcogenides (TMDs) and the creation of conducting channels in 2D topological insulators. Therefore, understanding the nature of GBs and their influence on device applications emphasizes the importance of GB engineering for future 2D TMD-based devices. This review discusses recent progress made in the investigation of various roles of GBs in 2D TMDs characterized via scanning tunneling microscopy/spectroscopy.

晶界(GBs)是一种一维或二维(2D)缺陷,在晶体中普遍存在,在决定晶体的机械、电学、光学和热电性能方面起着至关重要的作用。一般来说,gb会降低导电性或导热性,从而降低设备的性能。然而,GBs的不同寻常的特性导致了用二维半导体过渡金属二硫族化合物(TMDs)生产一类新的忆阻器,并在二维拓扑绝缘体中创建了导电通道。因此,了解GB的性质及其对器件应用的影响,强调了GB工程对未来基于2D tmd的器件的重要性。本文综述了近年来利用扫描隧道显微镜/光谱学方法研究GBs在二维tmd中各种作用的研究进展。
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引用次数: 0
Therapeutic treatments for diabetes mellitus-induced liver injury by regulating oxidative stress and inflammation 通过调节氧化应激和炎症治疗糖尿病性肝损伤
Q3 Immunology and Microbiology Pub Date : 2023-07-10 DOI: 10.1186/s42649-023-00089-2
Chun-Sik Bae, Youngchan Lee, Taeho Ahn

Diabetes mellitus (DM) is a metabolic disease that affects all systems in the body, including the liver. Numerous studies have reported that chronic DM etiology and pathogenesis complications implicate oxidative stress, generating reactive oxygen species, such as superoxide anions and free radicals. In addition, pro-inflammatory reactions are also underlying functions closely related to oxidative stress that further exacerbate pathological DM states. The liver is especially susceptible to hyperglycemia-induced oxidative stress and the related inflammation. Thus, anti-oxidation and anti-inflammation therapies are promising strategies for treating liver damage. This review summarizes therapeutic treatments attenuating the generation of oxidative stress and pro-inflammation, which also cause DM-induced liver injury. Although the treatments have several impediments to be solved, these remedies may have clinically important implications under the absence of effective drugs for the damaged liver in DM patients.

糖尿病(DM)是一种影响身体所有系统的代谢性疾病,包括肝脏。大量研究报道慢性糖尿病的病因和发病并发症与氧化应激有关,产生活性氧,如超氧阴离子和自由基。此外,促炎反应也是与氧化应激密切相关的潜在功能,进一步加剧病理性糖尿病状态。肝脏特别容易受到高血糖引起的氧化应激和相关炎症的影响。因此,抗氧化和抗炎症治疗是治疗肝损伤的有希望的策略。本文综述了减轻氧化应激和促炎症产生的治疗方法,这些治疗方法也引起dm诱导的肝损伤。虽然治疗有一些障碍需要解决,但在缺乏有效药物治疗糖尿病患者受损肝脏的情况下,这些补救措施可能具有重要的临床意义。
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引用次数: 2
New recorded diatoms in Holocene sediment cores from the Gonggeom-ji Wetland in Korea 韩国贡贡记湿地全新世沉积物岩心中新记录的硅藻
Q3 Immunology and Microbiology Pub Date : 2023-01-20 DOI: 10.1186/s42649-023-00086-5
Daeryul Kwon, Mirye Park, Hoil Lee, Jin-Young Lee, Sang Deuk Lee

The Gonggeom-ji reservoir is an agricultural one built for rice farming during the Proto-Three Kingdoms period and was designated as Gyeongsangbuk-do monument No. 121 because of its high historical value. The Nakdonggang National Institute of Biological Resources has been conducting paleontological and paleoenvironmental studies on major wetlands from Korea since 2016, as well as diatom, geological, and depth distribution analyses on the sedimentary soil of Gonggeom-ji. This study summarized the description and ecological characteristics of six newly recorded diatoms (Gomphonema lacusrankala, Pinnularia diandae, P. gibba var. hyaline, P. lacunarum, Sellaphora labda var. nipponica, Stauroneis angustilancea) found in samples collected through drilling in Gonggeom-ji in 2019.

公形池是原三国时期为种植水稻而建造的农业水库,因具有很高的历史价值而被指定为庆尚北道第121号纪念物。洛东江国立生物资源研究所从2016年开始对国内主要湿地进行了古生物学和古环境研究,并对公形集沉积土壤进行了硅藻、地质、深度分布分析。摘要总结了2019年在贡geomo -ji钻孔中发现的6种新记录硅藻(Gomphonema lacusrankala, Pinnularia diandae, P. gibba var. hyaline, P. lacunarum, Sellaphora labda var. nipponica, souroneis angustilancea)的描述和生态特征。
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引用次数: 0
Environmental factors affecting akinete germination and resting cell awakening of two cyanobacteria 影响两种蓝藻芽胞萌发和静息细胞觉醒的环境因素
Q3 Immunology and Microbiology Pub Date : 2023-01-17 DOI: 10.1186/s42649-023-00085-6
Daeryul Kwon, Keonhee Kim, Hyunjin Jo, Sang Deuk Lee, Suk Min Yun, Chaehong Park

Globally, cyanobacteria frequently cause blooms that outcompete other species in the waterbody, affecting the diversity, decreasing water exchange rates, and promoting eutrophication that leads to excessive algal growth. Here, Dolichospermum circinale (akinetes) and Microcystic aeruginosa (resting cells), were isolated from the sediment in the Uiam Dam in the North Han River and near Ugok Bridge in the Nakdong River, respectively. The morphology, germination process and rates, and growth was evaluated in different environmental conditions. D. cercinalis germination began on day two of culturing, with maximum cell growth observed on day ten. In contrast, M. aeruginosa exhibited daily increase in cell density and colony size, with notable density increase on day six. Next, different environmental conditions were assessed. Akinetes exhibited high germination rates at low light intensity (5—30 µmol/m2/s), whereas resting cells exhibited high growth rates at high light intensity (50—100 µmol/m2/s). Furthermore, both cell types exhibited optimum germination and growth in media containing N and P at 20—30° at a pH of 7—9. Our study reveals the optimum conditions for the germination and growth of cyanobacterial akinetes and resting cells isolated from river sediment, respectively, and will assist in predicting cyanobacterial blooms for appropriate management.

在全球范围内,蓝藻经常导致水华,在水体中与其他物种竞争,影响多样性,降低水交换率,促进富营养化,导致藻类过度生长。本文分别从北汉江的岩岩大坝和洛东江的玉谷大桥附近的沉积物中分离出了圆形多胞菌(活动菌)和微囊铜绿菌(静息细胞)。在不同的环境条件下,对其形态、萌发过程、速率和生长进行了评价。培养后第2天开始萌发,第10天细胞生长达到最大值。相比之下,铜绿假单胞菌的细胞密度和菌落大小呈逐日增加的趋势,在第6天显著增加。其次,对不同的环境条件进行了评估。在低光强(5-30µmol/m2/s)下,Akinetes的萌发率较高,而在高光强(50-100µmol/m2/s)下,静息细胞的生长率较高。两种细胞在20 ~ 30°含氮和磷、pH为7 ~ 9的培养基中均表现出最佳的萌发和生长。我们的研究揭示了从河流沉积物中分离的蓝藻动胞菌和静息细胞的萌发和生长的最佳条件,并将有助于预测蓝藻华的适当管理。
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引用次数: 1
Changes of lysosome by L-serine in rotenone-treated hippocampal neurons 鱼藤酮处理海马神经元中l -丝氨酸对溶酶体的影响
Q3 Immunology and Microbiology Pub Date : 2023-01-10 DOI: 10.1186/s42649-022-00084-z
Sumin Shin, Su-Kyeong Hwang, Ji Young Mun

Oxidative stress destroys cellular organelles and damages DNA, eventually leading to degenerative brain disorders. Persistent mitochondrial damage by oxidative stress eventually causes cells to inhibit the function of lysosomes. Rotenone used in this study inhibits complex 1 of the mitochondrial electron transport chain. Due to this inhibition, the production of free radicals is promoted, and oxidative stress can occur. To test as a role of antioxidant, L-serine was treated before treatment of rotenone to HT22 hippocampal cells. Then, changes in the activity and structure of lysosomes were analyzed. As a result, the oxidative stress caused by rotenone in HT22 cells was protected by L-serine. L-serine reduced free radicals in cells, and the damaged lysosomal structure and lysosome activity were also protected.

氧化应激会破坏细胞器,破坏DNA,最终导致大脑退行性疾病。氧化应激引起的持续线粒体损伤最终导致细胞抑制溶酶体的功能。本研究中使用的鱼藤酮抑制线粒体电子传递链复合体1。由于这种抑制,自由基的产生被促进,并可能发生氧化应激。为了测试l -丝氨酸作为抗氧化剂的作用,在鱼藤酮治疗前处理l -丝氨酸对HT22海马细胞的作用。然后分析溶酶体活性和结构的变化。结果表明,鱼藤酮引起的HT22细胞氧化应激受到l -丝氨酸的保护。l -丝氨酸减少了细胞中的自由基,并保护了受损的溶酶体结构和活性。
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引用次数: 0
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